- Title
- Understanding the Pyrimethamine drug resistance mechanism via combined molecular dynamics and dynamic residue network analysis:
- Creator
- Amusengeri, Arnold, Tata, Rolland B, Tastan Bishop, Özlem
- Date
- 2020
- Type
- text
- Type
- article
- Identifier
- http://hdl.handle.net/10962/163022
- Identifier
- vital:41005
- Identifier
- https://doi.org/10.3390/molecules25040904
- Description
- In this era of precision medicine, insights into the resistance mechanism of drugs are integral for the development of potent therapeutics. Here, we sought to understand the contribution of four point mutations (N51I, C59R, S108N, and I164L) within the active site of the malaria parasite enzyme dihydrofolate reductase (DHFR) towards the resistance of the antimalarial drug pyrimethamine. Homology modeling was used to obtain full-length models of wild type (WT) and mutant DHFR. Molecular docking was employed to dock pyrimethamine onto the generated structures. Subsequent all-atom molecular dynamics (MD) simulations and binding free-energy computations highlighted that pyrimethamine’s stability and affinity inversely relates to the number of mutations within its binding site and, hence, resistance severity.
- Format
- 25 pages, pdf
- Language
- English
- Relation
- Molecules, Amusengeri, A., Tata, R.B. and Tastan Bishop, Ö., 2020. Understanding the Pyrimethamine drug resistance mechanism via combined molecular dynamics and dynamic residue network analysis. Molecules, 25(4), p.904, Molecules volume 25 number 4 1 24 February 2020 1420-3049
- Rights
- Publisher
- Rights
- Use of this resource is governed by the terms and conditions of the MDPI Open Access Statement (https://www.int-res.com/journals/terms-of-use/)
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Tastan Bishop, Ozlem (Prof)
RU Research Unit in Bioinformatics (RUBi)
RU Department of Biochemistry, Microbiology and Bioinformatics
SDG 03. Good Health and Well-Being
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| View Details Download | SOURCE1 | Understanding the Pyrimethamine drug resistance mechanism via combined molecular dynamics.pdf | 8 MB | Adobe Acrobat PDF | View Details Download |