Intraspecific mitochondrial gene variation can be as low as that of nuclear rRNA:
- Matumba, Tshifhiwa G, Oliver, Jody, Barker, Nigel P, McQuaid, Christopher D, Teske, Peter R
- Authors: Matumba, Tshifhiwa G , Oliver, Jody , Barker, Nigel P , McQuaid, Christopher D , Teske, Peter R
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/160401 , vital:40442 , https://doi.org/10.12688/f1000research.23635.2
- Description: Mitochondrial DNA (mtDNA) has long been used to date historical demographic events. The idea that it is useful for molecular dating rests on the premise that its evolution is neutral. Even though this idea has long been challenged, the evidence against clock-like evolution of mtDNA is often ignored. Here, we present a particularly clear and simple example to illustrate the implications of violations of the assumption of selective neutrality.
- Full Text:
- Date Issued: 2020
- Authors: Matumba, Tshifhiwa G , Oliver, Jody , Barker, Nigel P , McQuaid, Christopher D , Teske, Peter R
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/160401 , vital:40442 , https://doi.org/10.12688/f1000research.23635.2
- Description: Mitochondrial DNA (mtDNA) has long been used to date historical demographic events. The idea that it is useful for molecular dating rests on the premise that its evolution is neutral. Even though this idea has long been challenged, the evidence against clock-like evolution of mtDNA is often ignored. Here, we present a particularly clear and simple example to illustrate the implications of violations of the assumption of selective neutrality.
- Full Text:
- Date Issued: 2020
Modern supratidal microbialites fed by groundwater: functional drivers, value and trajectories
- Rishworth, Gavin M, Dodd, Carla, Perissinotto, Renzo, Bornman, Thomas G, Adams, Janine B, Anderson, Callum R, Cawthra, Hayley C, Dorrington, Hayley C, du Toit, Hendrik, Edworthy, Carla, Gibb, Ross-Lynne A, Human, Lucienne R D, Isemonger, Eric W, Lemley, David A, Miranda, Nelson A, Peer, Nasreen, Raw, Jacqueline L, Smith, Alan M, Steyn, Paul-Pierre, Strydom, Nadine A, Teske, Peter R, Welman, Peter R
- Authors: Rishworth, Gavin M , Dodd, Carla , Perissinotto, Renzo , Bornman, Thomas G , Adams, Janine B , Anderson, Callum R , Cawthra, Hayley C , Dorrington, Hayley C , du Toit, Hendrik , Edworthy, Carla , Gibb, Ross-Lynne A , Human, Lucienne R D , Isemonger, Eric W , Lemley, David A , Miranda, Nelson A , Peer, Nasreen , Raw, Jacqueline L , Smith, Alan M , Steyn, Paul-Pierre , Strydom, Nadine A , Teske, Peter R , Welman, Peter R
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426008 , vital:72306 , xlink:href="https://doi.org/10.1016/j.earscirev.2020.103364"
- Description: Microbial mats were the dominant habitat type in shallow marine environments between the Palaeoarchean and Phanerozoic. Many of these (termed ‘microbialites’) calcified as they grew but such lithified mats are rare along modern coasts for reasons such as unsuitable water chemistry, destructive metazoan influences and competition with other reef-builders such as corals or macroalgae. Nonetheless, extant microbialites occur in unique coastal ecosystems such as the Exuma Cays, Bahamas or Lake Clifton and Hamelin Pool, Australia, where limitations such as calcium carbonate availability or destructive bioturbation are diminished. Along the coast of South Africa, extensive distributions of living microbialites (including layered stromatolites) have been discovered and described since the early 2000s. Unlike the Bahamian and Australian ecosystems, the South African microbialites form exclusively in the supratidal coastal zone at the convergence of emergent groundwater seepage. Similar systems were documented subsequently in southwestern Australia, Northern Ireland and the Scottish Hebrides, as recently as 2018, revealing that supratidal microbialites have a global distribution. This review uses the best-studied formations to contextualise formative drivers and processes of these supratidal ecosystems and highlight their geological, ecological and societal relevance.
- Full Text:
- Date Issued: 2020
- Authors: Rishworth, Gavin M , Dodd, Carla , Perissinotto, Renzo , Bornman, Thomas G , Adams, Janine B , Anderson, Callum R , Cawthra, Hayley C , Dorrington, Hayley C , du Toit, Hendrik , Edworthy, Carla , Gibb, Ross-Lynne A , Human, Lucienne R D , Isemonger, Eric W , Lemley, David A , Miranda, Nelson A , Peer, Nasreen , Raw, Jacqueline L , Smith, Alan M , Steyn, Paul-Pierre , Strydom, Nadine A , Teske, Peter R , Welman, Peter R
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426008 , vital:72306 , xlink:href="https://doi.org/10.1016/j.earscirev.2020.103364"
- Description: Microbial mats were the dominant habitat type in shallow marine environments between the Palaeoarchean and Phanerozoic. Many of these (termed ‘microbialites’) calcified as they grew but such lithified mats are rare along modern coasts for reasons such as unsuitable water chemistry, destructive metazoan influences and competition with other reef-builders such as corals or macroalgae. Nonetheless, extant microbialites occur in unique coastal ecosystems such as the Exuma Cays, Bahamas or Lake Clifton and Hamelin Pool, Australia, where limitations such as calcium carbonate availability or destructive bioturbation are diminished. Along the coast of South Africa, extensive distributions of living microbialites (including layered stromatolites) have been discovered and described since the early 2000s. Unlike the Bahamian and Australian ecosystems, the South African microbialites form exclusively in the supratidal coastal zone at the convergence of emergent groundwater seepage. Similar systems were documented subsequently in southwestern Australia, Northern Ireland and the Scottish Hebrides, as recently as 2018, revealing that supratidal microbialites have a global distribution. This review uses the best-studied formations to contextualise formative drivers and processes of these supratidal ecosystems and highlight their geological, ecological and societal relevance.
- Full Text:
- Date Issued: 2020
Rejection of the genetic implications of the “Abundant Centre Hypothesis” in marine mussels
- Ntuli, Noxolo N, Nicastro, Katy R, Zardi, Gerardo I, Assis, Jorge, McQuaid, Christopher D, Teske, Peter R
- Authors: Ntuli, Noxolo N , Nicastro, Katy R , Zardi, Gerardo I , Assis, Jorge , McQuaid, Christopher D , Teske, Peter R
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444839 , vital:74302 , https://www.nature.com/articles/s41598-020-57474-0
- Description: The ‘Abundant-Centre Hypothesis’ is a well-established but controversial hypothesis stating that the abundance of a species is highest at the centre of its range and decreases towards the edges, where conditions are unfavourable. As genetic diversity depends on population size, edge populations are expected to show lower intra-population genetic diversity than core populations, while showing high inter-population genetic divergence. Here, the genetic implications of the Abundant-Centre Hypothesis were tested on two coastal mussels from South Africa that disperse by means of planktonic larvae, the native Perna perna and the invasive Mytilus galloprovincialis. Genetic structure was found within P. perna, which, together with evidence from Lagrangian particle simulations, points to significant reductions in gene flow between sites. Despite this, the expected diversity pattern between centre and edge populations was not found for either species. We conclude that the genetic predictions of the Abundant-Centre Hypothesis are unlikely to be met by high-dispersal species with large population sizes, and may only become evident in species with much lower levels of connectivity.
- Full Text:
- Date Issued: 2020
- Authors: Ntuli, Noxolo N , Nicastro, Katy R , Zardi, Gerardo I , Assis, Jorge , McQuaid, Christopher D , Teske, Peter R
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444839 , vital:74302 , https://www.nature.com/articles/s41598-020-57474-0
- Description: The ‘Abundant-Centre Hypothesis’ is a well-established but controversial hypothesis stating that the abundance of a species is highest at the centre of its range and decreases towards the edges, where conditions are unfavourable. As genetic diversity depends on population size, edge populations are expected to show lower intra-population genetic diversity than core populations, while showing high inter-population genetic divergence. Here, the genetic implications of the Abundant-Centre Hypothesis were tested on two coastal mussels from South Africa that disperse by means of planktonic larvae, the native Perna perna and the invasive Mytilus galloprovincialis. Genetic structure was found within P. perna, which, together with evidence from Lagrangian particle simulations, points to significant reductions in gene flow between sites. Despite this, the expected diversity pattern between centre and edge populations was not found for either species. We conclude that the genetic predictions of the Abundant-Centre Hypothesis are unlikely to be met by high-dispersal species with large population sizes, and may only become evident in species with much lower levels of connectivity.
- Full Text:
- Date Issued: 2020
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