The influence of the physical environment on invertebrate larval transport, settlement and recruitment with insights on early-stage physiological performance
- Authors: Duna, Oliver Olwethu
- Date: 2024-04-05
- Subjects: Larvae Physiology , Bivalves , Invertebrates Habitat , Larvae Dispersal , Biological oceanography , Larvae Geographical distribution
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435663 , vital:73177 , DOI 10.21504/10962/435663
- Description: Most marine benthic organisms have a biphasic life cycle whereby the larvae are pelagic, and their distribution, transport and settlement are largely controlled by environmental factors. Among these factors, hydrodynamics have key direct effects. Nearshore water hydrodynamics are strongly influenced by wind. This study investigated whether wind indirectly affects the distribution, settlement and recruitment of invertebrate marine larvae. Additionally, larvae are exposed to a more constant, benign environment than they will experience after settlement, and therefore the possible effects of larval thermal history on the physiological plasticity of settled organisms was also estimated for possible long-term insights into population dynamics. Four sites, two on the western and two on the eastern side of Algoa Bay in Gqeberha (formerly known as Port Elizabeth), South Africa, were chosen for larval collection. Sites at opposite ends of the bay were selected as they were towards either side of the dominant wind directions in this region. At each site, two sampling stations were identified at 300 and 900 metres offshore, with station replicates 300 metres apart. Sampling of marine invertebrate larvae was conducted after two days of westerly or easterly winds at either of the two western or eastern sites. The number of hours of unidirectional wind determined the prevalent wind on the two days prior to sampling. Samples were collected with a plankton pump at three depths; surface, mid-depth and bottom. Simultaneously with plankton sampling, water properties (fluorescence, temperature, zonal and meridional flow, salinity and oxygen) were measured. Settlement/recruitment samples of mussels and barnacles were collected at six sites, two at either edge of the bay and two within the center of the bay. Plastic scouring pads and PVC plastic plates covered with safety-walk, placed at least 30 cm from each other, were used to collect settlers/recruits of mussels and barnacles, respectively. The pads and plates were replaced on a monthly basis for 14 months to quantify monthly settlement/recruitment. At four of the six sites used for quantifying settlement/recruitment, settlers and recruits were collected to measure the physiological responses of these two ontogenetic stages (settlers and recruits) to acute temperature variations which they might experience in the intertidal zone. Three temperature loggers were used to record real time temperature variation at each site over the period (one month) in which the artificial collectors were in position. Factorial ANOVA was used to investigate the effects of wind, depth, site, and distance from the shore on the abundance of larvae in the water column, as well as the effects of month and site on settlement/recruitment. Additionally, multiple regression analyses were used to investigate the effects of physical parameters, including upwelling and dissipation of turbulent kinetic energy, on the abundance of both larvae, settlers and recruits. Distance-based linear models and redundancy analyses were also carried out on the abundances of invertebrate larvae. Correlation analyses were performed to investigate the effect of the number of hours of directional wind on settlement. Lastly, correlation analyses between wind and currents were carried out. The results revealed a link between winds and currents, with wind speed directly proportional to surface current speed, which, as expected, decreased with depth. Current direction was, however, not perfectly aligned with wind direction. Larval distribution, settlement and recruitment were largely associated with the nearshore dissipation of turbulent kinetic energy and upwelling. Thus, overall larval, settler and recruit abundances were indirectly affected by wind. Physiologically, there was no significant difference in oxygen consumption between the juvenile ontogenetic stages (settlers and recruits) of mussels. Recruits exposed to average and maximum temperatures, however, consumed more oxygen than those exposed to low temperatures. Wind and wind-mediated currents as well as temperature have been shown to shape the distribution and shore supply of larvae, and this study contributes to the broad knowledge of population dynamics and replenishment, and the tight relation of abiotic factors affecting biological processes on the shore. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
- Authors: Duna, Oliver Olwethu
- Date: 2024-04-05
- Subjects: Larvae Physiology , Bivalves , Invertebrates Habitat , Larvae Dispersal , Biological oceanography , Larvae Geographical distribution
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435663 , vital:73177 , DOI 10.21504/10962/435663
- Description: Most marine benthic organisms have a biphasic life cycle whereby the larvae are pelagic, and their distribution, transport and settlement are largely controlled by environmental factors. Among these factors, hydrodynamics have key direct effects. Nearshore water hydrodynamics are strongly influenced by wind. This study investigated whether wind indirectly affects the distribution, settlement and recruitment of invertebrate marine larvae. Additionally, larvae are exposed to a more constant, benign environment than they will experience after settlement, and therefore the possible effects of larval thermal history on the physiological plasticity of settled organisms was also estimated for possible long-term insights into population dynamics. Four sites, two on the western and two on the eastern side of Algoa Bay in Gqeberha (formerly known as Port Elizabeth), South Africa, were chosen for larval collection. Sites at opposite ends of the bay were selected as they were towards either side of the dominant wind directions in this region. At each site, two sampling stations were identified at 300 and 900 metres offshore, with station replicates 300 metres apart. Sampling of marine invertebrate larvae was conducted after two days of westerly or easterly winds at either of the two western or eastern sites. The number of hours of unidirectional wind determined the prevalent wind on the two days prior to sampling. Samples were collected with a plankton pump at three depths; surface, mid-depth and bottom. Simultaneously with plankton sampling, water properties (fluorescence, temperature, zonal and meridional flow, salinity and oxygen) were measured. Settlement/recruitment samples of mussels and barnacles were collected at six sites, two at either edge of the bay and two within the center of the bay. Plastic scouring pads and PVC plastic plates covered with safety-walk, placed at least 30 cm from each other, were used to collect settlers/recruits of mussels and barnacles, respectively. The pads and plates were replaced on a monthly basis for 14 months to quantify monthly settlement/recruitment. At four of the six sites used for quantifying settlement/recruitment, settlers and recruits were collected to measure the physiological responses of these two ontogenetic stages (settlers and recruits) to acute temperature variations which they might experience in the intertidal zone. Three temperature loggers were used to record real time temperature variation at each site over the period (one month) in which the artificial collectors were in position. Factorial ANOVA was used to investigate the effects of wind, depth, site, and distance from the shore on the abundance of larvae in the water column, as well as the effects of month and site on settlement/recruitment. Additionally, multiple regression analyses were used to investigate the effects of physical parameters, including upwelling and dissipation of turbulent kinetic energy, on the abundance of both larvae, settlers and recruits. Distance-based linear models and redundancy analyses were also carried out on the abundances of invertebrate larvae. Correlation analyses were performed to investigate the effect of the number of hours of directional wind on settlement. Lastly, correlation analyses between wind and currents were carried out. The results revealed a link between winds and currents, with wind speed directly proportional to surface current speed, which, as expected, decreased with depth. Current direction was, however, not perfectly aligned with wind direction. Larval distribution, settlement and recruitment were largely associated with the nearshore dissipation of turbulent kinetic energy and upwelling. Thus, overall larval, settler and recruit abundances were indirectly affected by wind. Physiologically, there was no significant difference in oxygen consumption between the juvenile ontogenetic stages (settlers and recruits) of mussels. Recruits exposed to average and maximum temperatures, however, consumed more oxygen than those exposed to low temperatures. Wind and wind-mediated currents as well as temperature have been shown to shape the distribution and shore supply of larvae, and this study contributes to the broad knowledge of population dynamics and replenishment, and the tight relation of abiotic factors affecting biological processes on the shore. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2024
- Full Text:
Functional biogeography: evaluating community assemblage patterns and ecosystem functioning in intertidal systems using trait-based approaches
- Authors: Gusha, Molline Natanah C
- Date: 2022-10-14
- Subjects: Biogeography , Marine algae , Benthic ecology , Invertebrates , Functional redundancy , Ocean temperature , Biology Classification
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365792 , vital:65790 , DOI https://doi.org/10.21504/10962/365792
- Description: Analyses of taxonomic diversity patterns within coastal systems has been critical in the development of the theory of biogeography. Increasing evidence, however, shows that the variety of functions that species perform in ecosystems (rather than their taxonomic identity) is a better predictor of the influence of the environment on the species. This information has been useful in predictive ecology leading to the development of trait-based approaches (TBA). Until the late 1970s, however, limited effort (particularly in marine systems) was channeled towards patterns in functional species traits and how they may be affected by changes in environmental gradients. Here, I mapped the functional biogeography of the South African coastline based on a suite of species' reproduction and development traits. Because species composition is one of the key tools used by zoogeographers to map species distribution patterns, I expected lower variability in trait composition within main biogeographic regions than in intervening transition zones based on the habitat templet theory and following the biomass ratio and limiting similarity hypotheses. In brief, the habitat templet theory proposes that “the habitat provides a templet upon which evolution forges species characteristics”, while the biomass ratio hypothesis assumes that the most abundant species traits determine ecosystem functioning. The limiting similarity hypothesis also sometimes referred to as the niche complementarity hypothesis, however, predicts that species can coexist if their niches complement one another. In light of the habitat being an evolutionary templet, abiotic and biotic habitat patterns were measured as nearshore SST and chlorophyll-a gradients, respectively. I expected the SST gradient to act as the stronger key filter of trait diversification because temperature is often considered the most influential environmental factor affecting species survival with seasonality of SST affecting the timing of spawning and along with food availability, possibly influencing fecundity. Functional trait data were thus compiled for macroinvertebrate species collected from fifty-two rocky shore sites from three main bioregions (east, south, and west) and two transition zones (south-west and south-east). Biological trait analysis and functional diversity indices were used to evaluate how traits related to species development and reproduction respond to temperature and chlorophyll -a (used as a proxy for food availability) gradients along the coastline. GLMM and hierarchical cluster analyses showed distinct patterns/shifts in SST and chlorophyll-a gradients across bioregions, with two main breaks in SST separating the east and south-east overlap (SEO) bioregions from the south, south-west overlap (SWO) and west bioregions. In contrast, chlorophyll-a exhibited three major breaks with the east, SEO–south–SWO, and west clustering independently of each other. The RLQ analysis (a type of co-inertia analysis) which simultaneously ordinates 3-matrix datasets [i.e., (environment × site[R]), (species × site[L]) and (species × traits [Q])] showed that the higher SST gradient on the east and SEO promoted higher abundance and biomass of simultaneous hermaphrodites while higher chlorophyll-a gradients on the SWO and west coasts strongly promoted reproductive maturity at larger-sizes. The combined fourth-corner analyses showed that the modalities within the development trait domain responding to chlorophyll-a gradients primarily included filter feeders, sessile and swimming species and also species living on the infratidal zone. In addition, the reproduction trait domain showed higher sensitivity and association to differences in chlorophyll-a and SST gradients than development traits. Overall, SST and chlorophyll-a gradients influenced the distribution of the most dominant traits as indicated by shifts in community-weighted mean trait values across bioregions. This suggests the importance of habitat filtering on coastal species reproduction. A separate study evaluating the influence of large-scale biogeographic effects vs the micro-scale biogenic habitat structure offered by coralline seaweeds across 24 sites revealed some notable effects of both factors on the diversity and abundance of macroalgal epifauna. There was a notable biogeographic influence on epifauna, with the SEO recording the highest epifaunal species richness and abundance, followed by the south coast, then the SWO and lastly the west coast. In addition, the total biomass gradient of the corallines followed a similar trend. The epifauna however, showed no host-specificity, illustrating that epifauna may not be species–centric as commonly assumed, and the higher diversity of epifaunal diversity may well be simply because those corallines are the available habitat within the sampled part of the coastline. Lastly, macroinvertebrate trait distribution on the South African coastline confirms that the habitat, particularly the biotic filter (in this case chl-a) provides a templet upon which evolution forges species traits. However, since temperature is a proxy for nutrient availability (cold upwelling brings nutrients), then temperature drives chlorophyll-a. Subsequently this means the abiotic component indirectly drives trait distribution by influencing the biotic environment (chl-a). For epifauna species, also, the coralline diversity and composition can also be regarded as a biotic filter influencing the epifaunal abundances and composition across different bioregions. Moreover, since temperature is regarded as a conservative trait in seaweeds, temperature tolerance defines the biogeographical boundaries of seaweeds, therefore temperature may be indirectly affecting epifauna abundances through coralline species diversity and biomass. In summary, considering the deterministic processes governing ecosystem functioning and community assemblage, the mass ratio and limiting similarity hypotheses showed complementary effects. Different bioregions provided variable support for these two hypotheses, but overall, the mass ratio hypothesis (weighted by species biomass) received stronger support and may be more meaningful to the interpretation of ecosystem functioning and persistence within rocky shore systems. Lastly, although, the SWO showed some of the characteristics of a subtraction zone based on the relatively low abundance, diversity, and biomass measures. Nonetheless, there was evidence of high functional redundancy across all other four bioregions. This suggests that in the context of development and reproduction traits, the rocky shore ecosystem along the SA coastline may be functionally stable at this stage. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
- Authors: Gusha, Molline Natanah C
- Date: 2022-10-14
- Subjects: Biogeography , Marine algae , Benthic ecology , Invertebrates , Functional redundancy , Ocean temperature , Biology Classification
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/365792 , vital:65790 , DOI https://doi.org/10.21504/10962/365792
- Description: Analyses of taxonomic diversity patterns within coastal systems has been critical in the development of the theory of biogeography. Increasing evidence, however, shows that the variety of functions that species perform in ecosystems (rather than their taxonomic identity) is a better predictor of the influence of the environment on the species. This information has been useful in predictive ecology leading to the development of trait-based approaches (TBA). Until the late 1970s, however, limited effort (particularly in marine systems) was channeled towards patterns in functional species traits and how they may be affected by changes in environmental gradients. Here, I mapped the functional biogeography of the South African coastline based on a suite of species' reproduction and development traits. Because species composition is one of the key tools used by zoogeographers to map species distribution patterns, I expected lower variability in trait composition within main biogeographic regions than in intervening transition zones based on the habitat templet theory and following the biomass ratio and limiting similarity hypotheses. In brief, the habitat templet theory proposes that “the habitat provides a templet upon which evolution forges species characteristics”, while the biomass ratio hypothesis assumes that the most abundant species traits determine ecosystem functioning. The limiting similarity hypothesis also sometimes referred to as the niche complementarity hypothesis, however, predicts that species can coexist if their niches complement one another. In light of the habitat being an evolutionary templet, abiotic and biotic habitat patterns were measured as nearshore SST and chlorophyll-a gradients, respectively. I expected the SST gradient to act as the stronger key filter of trait diversification because temperature is often considered the most influential environmental factor affecting species survival with seasonality of SST affecting the timing of spawning and along with food availability, possibly influencing fecundity. Functional trait data were thus compiled for macroinvertebrate species collected from fifty-two rocky shore sites from three main bioregions (east, south, and west) and two transition zones (south-west and south-east). Biological trait analysis and functional diversity indices were used to evaluate how traits related to species development and reproduction respond to temperature and chlorophyll -a (used as a proxy for food availability) gradients along the coastline. GLMM and hierarchical cluster analyses showed distinct patterns/shifts in SST and chlorophyll-a gradients across bioregions, with two main breaks in SST separating the east and south-east overlap (SEO) bioregions from the south, south-west overlap (SWO) and west bioregions. In contrast, chlorophyll-a exhibited three major breaks with the east, SEO–south–SWO, and west clustering independently of each other. The RLQ analysis (a type of co-inertia analysis) which simultaneously ordinates 3-matrix datasets [i.e., (environment × site[R]), (species × site[L]) and (species × traits [Q])] showed that the higher SST gradient on the east and SEO promoted higher abundance and biomass of simultaneous hermaphrodites while higher chlorophyll-a gradients on the SWO and west coasts strongly promoted reproductive maturity at larger-sizes. The combined fourth-corner analyses showed that the modalities within the development trait domain responding to chlorophyll-a gradients primarily included filter feeders, sessile and swimming species and also species living on the infratidal zone. In addition, the reproduction trait domain showed higher sensitivity and association to differences in chlorophyll-a and SST gradients than development traits. Overall, SST and chlorophyll-a gradients influenced the distribution of the most dominant traits as indicated by shifts in community-weighted mean trait values across bioregions. This suggests the importance of habitat filtering on coastal species reproduction. A separate study evaluating the influence of large-scale biogeographic effects vs the micro-scale biogenic habitat structure offered by coralline seaweeds across 24 sites revealed some notable effects of both factors on the diversity and abundance of macroalgal epifauna. There was a notable biogeographic influence on epifauna, with the SEO recording the highest epifaunal species richness and abundance, followed by the south coast, then the SWO and lastly the west coast. In addition, the total biomass gradient of the corallines followed a similar trend. The epifauna however, showed no host-specificity, illustrating that epifauna may not be species–centric as commonly assumed, and the higher diversity of epifaunal diversity may well be simply because those corallines are the available habitat within the sampled part of the coastline. Lastly, macroinvertebrate trait distribution on the South African coastline confirms that the habitat, particularly the biotic filter (in this case chl-a) provides a templet upon which evolution forges species traits. However, since temperature is a proxy for nutrient availability (cold upwelling brings nutrients), then temperature drives chlorophyll-a. Subsequently this means the abiotic component indirectly drives trait distribution by influencing the biotic environment (chl-a). For epifauna species, also, the coralline diversity and composition can also be regarded as a biotic filter influencing the epifaunal abundances and composition across different bioregions. Moreover, since temperature is regarded as a conservative trait in seaweeds, temperature tolerance defines the biogeographical boundaries of seaweeds, therefore temperature may be indirectly affecting epifauna abundances through coralline species diversity and biomass. In summary, considering the deterministic processes governing ecosystem functioning and community assemblage, the mass ratio and limiting similarity hypotheses showed complementary effects. Different bioregions provided variable support for these two hypotheses, but overall, the mass ratio hypothesis (weighted by species biomass) received stronger support and may be more meaningful to the interpretation of ecosystem functioning and persistence within rocky shore systems. Lastly, although, the SWO showed some of the characteristics of a subtraction zone based on the relatively low abundance, diversity, and biomass measures. Nonetheless, there was evidence of high functional redundancy across all other four bioregions. This suggests that in the context of development and reproduction traits, the rocky shore ecosystem along the SA coastline may be functionally stable at this stage. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
Phylogeography and reproductive isolation of the brown mussel, Perna perna, on the South African coastline
- Authors: Barker, Cassandra
- Date: 2021-10
- Subjects: Mexilhao mussel South Africa , Phylogeography South Africa , Mexilhao mussel Reproduction , Mexilhao mussel Genetics , Intertidal organisms South Africa , Mexilhao mussel Climatic factors South Africa , Cytochrome oxidase , Mitochondrial DNA , Haplotype network
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190041 , vital:44958
- Description: Maintenance of a species’ abundance and adaptive potential is partially dependent on its genetic diversity. Distinct genetic lineages within a species can differ significantly in their resistance and resilience to environmental pressure. An assessment of such differences is key to grasp the adaptive potential of a species. Physical environmental conditions are significant determinants of the distribution of species and their genetic lineages. Under climate change scenarios, the assessment of the temporal stability of the spatial distribution of genetic structure has important consequences for conservation as it offers key insights into the adaptive potential and evolutionary capacity of a species. This thesis investigated the phylogeography and reproductive isolation of Perna perna, the brown mussel. This species is an ecologically and economically important intertidal mussel on South Africa’s coastline. It was determined in 2007 that there were two distinct genetic lineages of P. perna present on South Africa’s coastline, the Eastern and Western lineage. This thesis compared mitochondrial DNA between samples collected in 2007 and samples collected in 2019 to determine differences in genetic structure of P. perna over time. This thesis further investigated the reproductive timing of the two lineages to determine if this contributes to the maintenance of the genetic structure of this species. The results show that there is a shift in the distribution of the Eastern lineage since 2007, an increase in the range of the overlap region, and there was a change in genetic diversity in the form of private haplotypes between 2007 and 2019. The lineages have unsynchronised spawning and reproductive patterns are more closely linked to changes in temperature. While the lineages have shown slight distributional changes over time, the influence of environmental conditions and the predicted changes in sea surface temperatures could see a change in future populations’ fitness and dispersal. Thus, changes in sea surface temperature could affect reproductive timing and the future genetic stability of the species. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Authors: Barker, Cassandra
- Date: 2021-10
- Subjects: Mexilhao mussel South Africa , Phylogeography South Africa , Mexilhao mussel Reproduction , Mexilhao mussel Genetics , Intertidal organisms South Africa , Mexilhao mussel Climatic factors South Africa , Cytochrome oxidase , Mitochondrial DNA , Haplotype network
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190041 , vital:44958
- Description: Maintenance of a species’ abundance and adaptive potential is partially dependent on its genetic diversity. Distinct genetic lineages within a species can differ significantly in their resistance and resilience to environmental pressure. An assessment of such differences is key to grasp the adaptive potential of a species. Physical environmental conditions are significant determinants of the distribution of species and their genetic lineages. Under climate change scenarios, the assessment of the temporal stability of the spatial distribution of genetic structure has important consequences for conservation as it offers key insights into the adaptive potential and evolutionary capacity of a species. This thesis investigated the phylogeography and reproductive isolation of Perna perna, the brown mussel. This species is an ecologically and economically important intertidal mussel on South Africa’s coastline. It was determined in 2007 that there were two distinct genetic lineages of P. perna present on South Africa’s coastline, the Eastern and Western lineage. This thesis compared mitochondrial DNA between samples collected in 2007 and samples collected in 2019 to determine differences in genetic structure of P. perna over time. This thesis further investigated the reproductive timing of the two lineages to determine if this contributes to the maintenance of the genetic structure of this species. The results show that there is a shift in the distribution of the Eastern lineage since 2007, an increase in the range of the overlap region, and there was a change in genetic diversity in the form of private haplotypes between 2007 and 2019. The lineages have unsynchronised spawning and reproductive patterns are more closely linked to changes in temperature. While the lineages have shown slight distributional changes over time, the influence of environmental conditions and the predicted changes in sea surface temperatures could see a change in future populations’ fitness and dispersal. Thus, changes in sea surface temperature could affect reproductive timing and the future genetic stability of the species. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
Scale-specific processes underlying the genetic population structure of seabirds in the tropical western Indian Ocean
- Authors: Danckwerts, Daniel Keith
- Date: 2018
- Subjects: Sea birds -- Indian Ocean , Sea birds -- Behavior -- Indian Ocean , Sea birds -- Mortality -- Indian Ocean , Sea birds -- Mortality -- Prevention , Sea birds -- Reproduction , Bird declines -- Indian Ocean , Sea birds -- Indian Ocean -- Effect of human beings on , Sooty tern , Red-footed booby , Pterodroma
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/63944 , vital:28513
- Description: Global seabird populations have declined by 70%, since 1950, largely in response to human mediated threats. Identifying the pressures that the remaining populations face has therefore become a top priority. Many breeding colonies are now monitored annually, though others have been almost completely neglected. Considerable bias also exists towards higher latitude species, while fewer studies have been conducted on tropical groups. Beyond tracking population sizes, numerous knowledge gaps also exist that severely restrict conservation efforts. This includes the understanding of seabird meta-population structure and the processes underlying population divergence. The importance of these studies lies in the fact that the preservation of biodiversity requires the conservation of diversification processes. Generating this knowledge is therefore an important first step towards recognising responses to episodic disturbance and long-term environmental change, as well as recovery potential. In this context, the present study employed microsatellite analysis and ringing information to investigate the processes underlying the metapopulation structure of seabirds in the tropical western Indian Ocean. Three species were selected as proxies to cover a range of population sizes, distributional ranges, and intrinsic behavioural (e.g. migratory behaviour) and morphological (e.g. polymorphism) characteristics. These were the Sooty Tern (Onychoprion fuscatus), Red-footed Booby (Sula sula), and Barau’s Petrel (Pterodorma baraui). The overall objective was to provide insight into the mechanisms underlying divergence across a range of scales. Microsatellite information highlighted that genetic populations of the Red-footed Booby and Barau’s Petrel were weakly, though significantly, structured. For the Barau’s Petrel, this was supported by ringing information that indicated extreme colony fidelity. Some gene flow appears to occur among the breeding colonies of the Red-footed Booby, though the scale and frequency of this remains uncertain as banding information is insufficient at this stage. Nevertheless, though populations of both species were genetically structured, the processes underlying divergence were different. Extreme natal philopatry appears to have driven divergence between the two colonies of the Barau’s Petrel, while local selective forces (e.g. kleptoparasitism risk and/or selection against immigrants) appear to have isolated the three studied breeding colonies of the Red-footed Booby. Conversely, microsatellite information identified a total lack of genetic structure among breeding colonies of the Sooty Tern in the western Indian Ocean, and between colonies in the western Indian and Eastern Pacific Oceans. This accords with banding recoveries, which illustrate considerable inter-colony exchange of individuals among most islands of the Seychelles and between breeding colonies in the western Indian and West Pacific Oceans. The processes underlying the genetic population structure (or, in this case, lack thereof) in the Sooty Tern therefore appear to operate at extremely large scales. The species’ low natal philopatry and high dispersal capabilities, combined with an importance of social stimulation and a reliance on seasonally favourable marine conditions, appears to influence the decisions of where and when individual Sooty Terns choose to breed. Anthropogenic disturbance at breeding sites, particularly that related to egg harvesting activities, also appears to drive dispersal in the Sooty Tern. These results improve our understanding of the mechanisms underlying the genetic population structure in seabirds at low latitudes. However, numerous questions remain unanswered and warrant further study. Clear conservation implications were also identified for the three studied species. Nevertheless, caution should still be applied when extrapolating this information across other species.
- Full Text:
- Authors: Danckwerts, Daniel Keith
- Date: 2018
- Subjects: Sea birds -- Indian Ocean , Sea birds -- Behavior -- Indian Ocean , Sea birds -- Mortality -- Indian Ocean , Sea birds -- Mortality -- Prevention , Sea birds -- Reproduction , Bird declines -- Indian Ocean , Sea birds -- Indian Ocean -- Effect of human beings on , Sooty tern , Red-footed booby , Pterodroma
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/63944 , vital:28513
- Description: Global seabird populations have declined by 70%, since 1950, largely in response to human mediated threats. Identifying the pressures that the remaining populations face has therefore become a top priority. Many breeding colonies are now monitored annually, though others have been almost completely neglected. Considerable bias also exists towards higher latitude species, while fewer studies have been conducted on tropical groups. Beyond tracking population sizes, numerous knowledge gaps also exist that severely restrict conservation efforts. This includes the understanding of seabird meta-population structure and the processes underlying population divergence. The importance of these studies lies in the fact that the preservation of biodiversity requires the conservation of diversification processes. Generating this knowledge is therefore an important first step towards recognising responses to episodic disturbance and long-term environmental change, as well as recovery potential. In this context, the present study employed microsatellite analysis and ringing information to investigate the processes underlying the metapopulation structure of seabirds in the tropical western Indian Ocean. Three species were selected as proxies to cover a range of population sizes, distributional ranges, and intrinsic behavioural (e.g. migratory behaviour) and morphological (e.g. polymorphism) characteristics. These were the Sooty Tern (Onychoprion fuscatus), Red-footed Booby (Sula sula), and Barau’s Petrel (Pterodorma baraui). The overall objective was to provide insight into the mechanisms underlying divergence across a range of scales. Microsatellite information highlighted that genetic populations of the Red-footed Booby and Barau’s Petrel were weakly, though significantly, structured. For the Barau’s Petrel, this was supported by ringing information that indicated extreme colony fidelity. Some gene flow appears to occur among the breeding colonies of the Red-footed Booby, though the scale and frequency of this remains uncertain as banding information is insufficient at this stage. Nevertheless, though populations of both species were genetically structured, the processes underlying divergence were different. Extreme natal philopatry appears to have driven divergence between the two colonies of the Barau’s Petrel, while local selective forces (e.g. kleptoparasitism risk and/or selection against immigrants) appear to have isolated the three studied breeding colonies of the Red-footed Booby. Conversely, microsatellite information identified a total lack of genetic structure among breeding colonies of the Sooty Tern in the western Indian Ocean, and between colonies in the western Indian and Eastern Pacific Oceans. This accords with banding recoveries, which illustrate considerable inter-colony exchange of individuals among most islands of the Seychelles and between breeding colonies in the western Indian and West Pacific Oceans. The processes underlying the genetic population structure (or, in this case, lack thereof) in the Sooty Tern therefore appear to operate at extremely large scales. The species’ low natal philopatry and high dispersal capabilities, combined with an importance of social stimulation and a reliance on seasonally favourable marine conditions, appears to influence the decisions of where and when individual Sooty Terns choose to breed. Anthropogenic disturbance at breeding sites, particularly that related to egg harvesting activities, also appears to drive dispersal in the Sooty Tern. These results improve our understanding of the mechanisms underlying the genetic population structure in seabirds at low latitudes. However, numerous questions remain unanswered and warrant further study. Clear conservation implications were also identified for the three studied species. Nevertheless, caution should still be applied when extrapolating this information across other species.
- Full Text:
Geographical variation in effects of nutrient levels and grazing intensity on community structure between upwelling and non-upwelling regions of South Africa
- Authors: Steele, Nikita
- Date: 2014
- Subjects: Upwelling (Oceanography) , Upwelling (Oceanography) -- Indian Ocean , Algae -- Indian Ocean , Algae -- Effect of grazing on -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5873 , http://hdl.handle.net/10962/d1013013
- Description: The aim of this thesis was to assess the influence of upwelling on alga-grazer interactions in rocky shore communities along the south coast of South Africa using grazer exclusion treatments with controls and procedural controls set out in a block design and monitored for algal cover roughly monthly for one year. In the first experiment grazers were excluded from treatment plots at two upwelling and two non-upwelling sites and the rates of algal biomass accumulation were then compared. The upwelling sites showed significantly faster algal colonisation rates, with Ulva rigida being the first species to colonise the rocks. Final algal cover and biomass did not differ significantly between upwelling and non-upwelling sites in control plots open to grazers, but were significantly higher in grazer exclusion plots at upwelling sites indicating stronger grazing effects. This was confirmed by estimating the intensity of grazing using the log-response ratio (LRR), which was calculated from treatment and control plots. Upwelling sites had significantly lower LLR values indicating stronger grazing effects, than at non-upwelling sites, despite no difference in grazer abundances. The second experiment examined the effects of nutrient addition on algal growth and community composition by comparing high nutrient enrichment plots with low enrichment plots at one upwelling and one non-upwelling site. ANOVA indicated faster growth rates and significantly higher final algal biomass in high enrichment plots compared to low enrichment and control plots at both upwelling and non-upwelling sites. A two-way ANOVA indicated significantly higher algal cover in high enrichment plots compared to the data from the grazer exclusion plots in experiment 1 at both sites, suggesting that nutrient addition plays a major role in algal growth and community composition. The findings of these studies have shown significant differences between treatments, sites and seasons, with significant differences not only occurring in algal cover but also accumulation of algal biomass and recruitment patterns between treatments. The small scale local processes acting within a few centimetres (plots) or tens of meters (among blocks) can also be reflected over larger scales such as sites (upwelling/non-upwelling shores). Further, these studies have demonstrated that various factors such as the effects from increased nutrients at upwelling cells and the change in grazing effects due to enhanced nutrients can determine the abundance and diversity of the community structure, including an increase in the abundance of the fast growing algae Ulva rigida, and a slow recovery of the brown and red algae.
- Full Text:
- Authors: Steele, Nikita
- Date: 2014
- Subjects: Upwelling (Oceanography) , Upwelling (Oceanography) -- Indian Ocean , Algae -- Indian Ocean , Algae -- Effect of grazing on -- Indian Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5873 , http://hdl.handle.net/10962/d1013013
- Description: The aim of this thesis was to assess the influence of upwelling on alga-grazer interactions in rocky shore communities along the south coast of South Africa using grazer exclusion treatments with controls and procedural controls set out in a block design and monitored for algal cover roughly monthly for one year. In the first experiment grazers were excluded from treatment plots at two upwelling and two non-upwelling sites and the rates of algal biomass accumulation were then compared. The upwelling sites showed significantly faster algal colonisation rates, with Ulva rigida being the first species to colonise the rocks. Final algal cover and biomass did not differ significantly between upwelling and non-upwelling sites in control plots open to grazers, but were significantly higher in grazer exclusion plots at upwelling sites indicating stronger grazing effects. This was confirmed by estimating the intensity of grazing using the log-response ratio (LRR), which was calculated from treatment and control plots. Upwelling sites had significantly lower LLR values indicating stronger grazing effects, than at non-upwelling sites, despite no difference in grazer abundances. The second experiment examined the effects of nutrient addition on algal growth and community composition by comparing high nutrient enrichment plots with low enrichment plots at one upwelling and one non-upwelling site. ANOVA indicated faster growth rates and significantly higher final algal biomass in high enrichment plots compared to low enrichment and control plots at both upwelling and non-upwelling sites. A two-way ANOVA indicated significantly higher algal cover in high enrichment plots compared to the data from the grazer exclusion plots in experiment 1 at both sites, suggesting that nutrient addition plays a major role in algal growth and community composition. The findings of these studies have shown significant differences between treatments, sites and seasons, with significant differences not only occurring in algal cover but also accumulation of algal biomass and recruitment patterns between treatments. The small scale local processes acting within a few centimetres (plots) or tens of meters (among blocks) can also be reflected over larger scales such as sites (upwelling/non-upwelling shores). Further, these studies have demonstrated that various factors such as the effects from increased nutrients at upwelling cells and the change in grazing effects due to enhanced nutrients can determine the abundance and diversity of the community structure, including an increase in the abundance of the fast growing algae Ulva rigida, and a slow recovery of the brown and red algae.
- Full Text:
Identification and evaluation of key factors for rehabilitation of shores denuded of mussels (Perna perna) along the Transkei Coast, South Africa
- Authors: Macala, Lukholo
- Date: 2013
- Subjects: Mussels -- Ecology -- South Africa -- Transkei , Mussels -- Conservation -- South Africa -- Transkei , Mussels -- Growth -- South Africa -- Transkei , Mussels -- Effect of human beings on -- South Africa -- Transkei , Mussels -- Reproduction -- South Africa -- Transkei , Perna -- South Africa -- Transkei
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5611 , http://hdl.handle.net/10962/d1002966 , Mussels -- Ecology -- South Africa -- Transkei , Mussels -- Conservation -- South Africa -- Transkei , Mussels -- Growth -- South Africa -- Transkei , Mussels -- Effect of human beings on -- South Africa -- Transkei , Mussels -- Reproduction -- South Africa -- Transkei , Perna -- South Africa -- Transkei
- Description: Mussels play an important supplementary role in the diet of local communities on the Transkei coast in the Eastern Cape province of South Africa. The exploitation of mussels date back to about 1350 years ago, but in the last 3 decades, exploitation of the brown mussel Perna perna has become unsustainable with mussels collected as small as 30-40mm when they are only just sexually mature. Dye and Dyantyi (2002) developed a technique to rehabilitate areas denuded of adult mussels. The government sponsored Mussel Rehabilitation Project (MRP) to use this technique but only some sites have been successfully rehabilitated, reaching c. 80 % cover within a year whilst others only reach about 5%. At an unexploited site (Riet River), I tested the effects of mussel size and wave strength on the effectiveness of the rehabilitation technique, hypothesizing that different size classes may respond differently due to differences in their energy allocation (growth vs reproduction), while wave action determines food supply. Small (1-2cm) and large mussels (3-4cm) were deployed for rehabilitation at 2 exposed and 2 sheltered sites, separated by 100s m. A similar study was repeated in Coffee Bay where shores are exploited. Six sites were selected, 3 sites that had been successfully rehabilitated and 3 that were unsuccessful according to the MRP. Again, two size classes were used but these differed from the first experiment. Mussels of 3-4cm size were now rated as small and 5-6cm as large. Two methods were used to re-attach mussels, the original and the same method with the addition of mesh bags during mussel deployment. Treatments were examined on three occasions at approximately one month intervals. At Riet River, the sites chosen did not show differences in wave strength (measured using dynamometers) or water flux (measured using erosion of cement balls) so that water motion was excluded from the analyses. Small mussels grew faster and had weaker attachment than large mussels. There was no difference in condition index between small and large mussels, or in the numbers of recruits settling among the byssus threads of deployed mussels of the two size classes. In Coffee Bay, there was no relationship between rehabilitation success and maximum wave force, and no difference in bulk water flux among sites. Small mussels deployed using mesh bags survived better than non-meshed or large mussels of either treatment. There was no difference in condition index (CI) between mesh and no-mesh, or between small and large mussels. As in the case of Riet River, small mussels grew faster than large mussels, but large mussels attached stronger than small mussels, with no effect of mesh. Although the factors that improve reseeding of mussels can be identified (use of mesh, use of small mussels, choice of sites with high recruitment rates), successful long-term rehabilitation requires appropriate subsequent management of re-seeded sites.
- Full Text:
- Authors: Macala, Lukholo
- Date: 2013
- Subjects: Mussels -- Ecology -- South Africa -- Transkei , Mussels -- Conservation -- South Africa -- Transkei , Mussels -- Growth -- South Africa -- Transkei , Mussels -- Effect of human beings on -- South Africa -- Transkei , Mussels -- Reproduction -- South Africa -- Transkei , Perna -- South Africa -- Transkei
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5611 , http://hdl.handle.net/10962/d1002966 , Mussels -- Ecology -- South Africa -- Transkei , Mussels -- Conservation -- South Africa -- Transkei , Mussels -- Growth -- South Africa -- Transkei , Mussels -- Effect of human beings on -- South Africa -- Transkei , Mussels -- Reproduction -- South Africa -- Transkei , Perna -- South Africa -- Transkei
- Description: Mussels play an important supplementary role in the diet of local communities on the Transkei coast in the Eastern Cape province of South Africa. The exploitation of mussels date back to about 1350 years ago, but in the last 3 decades, exploitation of the brown mussel Perna perna has become unsustainable with mussels collected as small as 30-40mm when they are only just sexually mature. Dye and Dyantyi (2002) developed a technique to rehabilitate areas denuded of adult mussels. The government sponsored Mussel Rehabilitation Project (MRP) to use this technique but only some sites have been successfully rehabilitated, reaching c. 80 % cover within a year whilst others only reach about 5%. At an unexploited site (Riet River), I tested the effects of mussel size and wave strength on the effectiveness of the rehabilitation technique, hypothesizing that different size classes may respond differently due to differences in their energy allocation (growth vs reproduction), while wave action determines food supply. Small (1-2cm) and large mussels (3-4cm) were deployed for rehabilitation at 2 exposed and 2 sheltered sites, separated by 100s m. A similar study was repeated in Coffee Bay where shores are exploited. Six sites were selected, 3 sites that had been successfully rehabilitated and 3 that were unsuccessful according to the MRP. Again, two size classes were used but these differed from the first experiment. Mussels of 3-4cm size were now rated as small and 5-6cm as large. Two methods were used to re-attach mussels, the original and the same method with the addition of mesh bags during mussel deployment. Treatments were examined on three occasions at approximately one month intervals. At Riet River, the sites chosen did not show differences in wave strength (measured using dynamometers) or water flux (measured using erosion of cement balls) so that water motion was excluded from the analyses. Small mussels grew faster and had weaker attachment than large mussels. There was no difference in condition index between small and large mussels, or in the numbers of recruits settling among the byssus threads of deployed mussels of the two size classes. In Coffee Bay, there was no relationship between rehabilitation success and maximum wave force, and no difference in bulk water flux among sites. Small mussels deployed using mesh bags survived better than non-meshed or large mussels of either treatment. There was no difference in condition index (CI) between mesh and no-mesh, or between small and large mussels. As in the case of Riet River, small mussels grew faster than large mussels, but large mussels attached stronger than small mussels, with no effect of mesh. Although the factors that improve reseeding of mussels can be identified (use of mesh, use of small mussels, choice of sites with high recruitment rates), successful long-term rehabilitation requires appropriate subsequent management of re-seeded sites.
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Community structure and predation impact of carnivorous macrozooplankton in the polar frontal zone (Southern Ocean), with particular reference to chaetognaths
- Authors: Lukáč, Danica
- Date: 2006
- Subjects: Zooplankton -- Antarctic Ocean , Chaetognatha
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5653 , http://hdl.handle.net/10962/d1005336 , Zooplankton -- Antarctic Ocean , Chaetognatha
- Description: The community structure and predation impact of carnivorous macrozooplankton (>2 cm; chaetognaths, medusae, ctenophores and mysids), with particular emphasis on the chaetognaths Eukrohnia hamata and Sagitta gazellae, were investigated during three surveys conducted in late austral summer (April/May) of 2001, 2004 and 2005 in the Polar Frontal Zone in the vicinity of the Prince Edward Islands (46º45’S, 37º50’E), Southern Ocean. The 2001 survey formed part of the Marion Offshore Variability Ecosystem Study (MOVES II), while the 2004 and 2005 surveys formed part of the Dynamics of Eddy Impacts on Marion’s Ecosystem study (DEIMEC III and IV respectively). Macrozooplankton samples were collected using WP-2, RMT-8 and Bongo nets. Results of the hydrographic survey indicated that the region of investigation, the Polar Frontal Zone (PFZ), is an area of high mesoscale variability. During the 2004 survey the Antarctic Polar Front (APF) and the Subantarctic Front (SAF) merged to form an intense frontal feature with subsurface temperature and salinity ranging from 8.5-7.5ºC and 34.15-33.88, respectively. A cyclonic cold core eddy, believed to have been spawned from the APF, was observed during the 2005 survey. Macrozooplankton abundance and biomass ranged from 0 to 43.731 ind. m⁻³, and from 0 to 41.55 mg wwt m⁻³ respectively, during the three surveys. Among the carnivorous macrozooplankton, chaetognaths (Eukrohnia hamata and Sagitta gazellae) were most prominent, contributing up to 85% of the total biomass during all three surveys. Elevated biomass values were found near and within the frontal feature during the 2004 survey, and also along the eddy edge during the 2005 survey. However, hierarchical cluster analysis did not reveal the presence of distinct zooplankton groupings associated with the various water masses encountered during the surveys and this is probably due to the high mesoscale variability in oceanographic conditions that are characteristic of the PFZ. The total average predation impact of the selected carnivorous macrozooplankton during the 2001, 2004 and 2005 surveys accounted for 4.93 ± 6.76%, 0.55 ± 0.51% and 4.88 ± 4.45 of the mesozooplankton standing stock, respectively. S. gazellae had the highest consumption rate in all three surveys, consuming up to 800 g Dwt 1000m⁻³d⁻¹ during the study. Of the two chaetognaths, E. hamata dominated the chaetognath standing stock. The combined abundance and biomass values of E. hamata and S. gazellae ranged from 0 to 43.73 ind. m⁻³ and from 0 to 41.551 mg wwt m⁻³ respectively, during the three surveys. Inter-annual variability in the chaetognath densities was apparent. Highest abundances and biomasses tended to be associated with specific water masses, confirming the existence of a relationship between zooplankton community structure and hydrographic conditions. Generally, about 90% of the chaetognaths contained no food in their guts. S. gazellae consumed a wider variety of prey. Oil droplets occurred in the guts of ≈ 51% of E. hamata. Cannibalism was low in both species, but greater in S. gazellae than E. hamata. During the three surveys, the feeding rate values of E. hamata and S. gazellae went up to 0.48 and 2.099 prey d⁻¹ respectively. S. gazellae also had a greater predation impact on the mesozooplankton standing stock than E. hamata. The mean predation impact of the chaetognaths combined was 0.31 ± 0.291%, 0.52 ± 0.28% and 0.53 ± 0.56% of the mesozooplankton standing stock during the 2001, 2004 and 2005 surveys, respectively. During all three surveys, the majority of individuals (≈ 76%) of the chaetognaths were at stage I maturity, suggesting that during the time of study the chaetognaths were not reproducing. In both species a significant difference (log-linear analysis, p < 0.05) in maturities between the years investigated was observed. In general, there were no differences in lengths and maturities between the different water masses encountered during the surveys. The lengths of E. hamata and S. gazellae ranged from 5 to 24 mm and from 9.4 to 63.6 mm, respectively.
- Full Text:
- Authors: Lukáč, Danica
- Date: 2006
- Subjects: Zooplankton -- Antarctic Ocean , Chaetognatha
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5653 , http://hdl.handle.net/10962/d1005336 , Zooplankton -- Antarctic Ocean , Chaetognatha
- Description: The community structure and predation impact of carnivorous macrozooplankton (>2 cm; chaetognaths, medusae, ctenophores and mysids), with particular emphasis on the chaetognaths Eukrohnia hamata and Sagitta gazellae, were investigated during three surveys conducted in late austral summer (April/May) of 2001, 2004 and 2005 in the Polar Frontal Zone in the vicinity of the Prince Edward Islands (46º45’S, 37º50’E), Southern Ocean. The 2001 survey formed part of the Marion Offshore Variability Ecosystem Study (MOVES II), while the 2004 and 2005 surveys formed part of the Dynamics of Eddy Impacts on Marion’s Ecosystem study (DEIMEC III and IV respectively). Macrozooplankton samples were collected using WP-2, RMT-8 and Bongo nets. Results of the hydrographic survey indicated that the region of investigation, the Polar Frontal Zone (PFZ), is an area of high mesoscale variability. During the 2004 survey the Antarctic Polar Front (APF) and the Subantarctic Front (SAF) merged to form an intense frontal feature with subsurface temperature and salinity ranging from 8.5-7.5ºC and 34.15-33.88, respectively. A cyclonic cold core eddy, believed to have been spawned from the APF, was observed during the 2005 survey. Macrozooplankton abundance and biomass ranged from 0 to 43.731 ind. m⁻³, and from 0 to 41.55 mg wwt m⁻³ respectively, during the three surveys. Among the carnivorous macrozooplankton, chaetognaths (Eukrohnia hamata and Sagitta gazellae) were most prominent, contributing up to 85% of the total biomass during all three surveys. Elevated biomass values were found near and within the frontal feature during the 2004 survey, and also along the eddy edge during the 2005 survey. However, hierarchical cluster analysis did not reveal the presence of distinct zooplankton groupings associated with the various water masses encountered during the surveys and this is probably due to the high mesoscale variability in oceanographic conditions that are characteristic of the PFZ. The total average predation impact of the selected carnivorous macrozooplankton during the 2001, 2004 and 2005 surveys accounted for 4.93 ± 6.76%, 0.55 ± 0.51% and 4.88 ± 4.45 of the mesozooplankton standing stock, respectively. S. gazellae had the highest consumption rate in all three surveys, consuming up to 800 g Dwt 1000m⁻³d⁻¹ during the study. Of the two chaetognaths, E. hamata dominated the chaetognath standing stock. The combined abundance and biomass values of E. hamata and S. gazellae ranged from 0 to 43.73 ind. m⁻³ and from 0 to 41.551 mg wwt m⁻³ respectively, during the three surveys. Inter-annual variability in the chaetognath densities was apparent. Highest abundances and biomasses tended to be associated with specific water masses, confirming the existence of a relationship between zooplankton community structure and hydrographic conditions. Generally, about 90% of the chaetognaths contained no food in their guts. S. gazellae consumed a wider variety of prey. Oil droplets occurred in the guts of ≈ 51% of E. hamata. Cannibalism was low in both species, but greater in S. gazellae than E. hamata. During the three surveys, the feeding rate values of E. hamata and S. gazellae went up to 0.48 and 2.099 prey d⁻¹ respectively. S. gazellae also had a greater predation impact on the mesozooplankton standing stock than E. hamata. The mean predation impact of the chaetognaths combined was 0.31 ± 0.291%, 0.52 ± 0.28% and 0.53 ± 0.56% of the mesozooplankton standing stock during the 2001, 2004 and 2005 surveys, respectively. During all three surveys, the majority of individuals (≈ 76%) of the chaetognaths were at stage I maturity, suggesting that during the time of study the chaetognaths were not reproducing. In both species a significant difference (log-linear analysis, p < 0.05) in maturities between the years investigated was observed. In general, there were no differences in lengths and maturities between the different water masses encountered during the surveys. The lengths of E. hamata and S. gazellae ranged from 5 to 24 mm and from 9.4 to 63.6 mm, respectively.
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Feeding dynamics and distribution of the hyperiid amphipod, Themisto gaudichaudii (Guérin, 1828) in the polar frontal zone, Southern Ocean
- Authors: Lange, Louise
- Date: 2006
- Subjects: Themisto gaudichaudii -- Antarctic Ocean , Hyperiidae -- Antarctic Ocean , Zooplankton -- Antarctic Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5696 , http://hdl.handle.net/10962/d1005382 , Themisto gaudichaudii -- Antarctic Ocean , Hyperiidae -- Antarctic Ocean , Zooplankton -- Antarctic Ocean
- Description: The population structure and feeding dynamics of the hyperiid amphipod, Themisto gaudichaudii, was investigated during two cruises of the South African National Antarctic Programme conducted in the Indian sector of the Polar Frontal Zone during austral autumn (April) 2004 and 2005. During the 2004 cruise the frontal features that delimit the PFZ converged to form a single distinctive feature. In 2005, the research cruise was conducted in the vicinity of a cold-core eddy which was spawned from the Antarctic Polar Front. Total mesozooplankton abundance and biomass during the 2004 study ranged from 55.19 to 860.57 ind. m⁻³, and from 2.60 to 38.42 mg dwt m⁻³, respectively. In 2005 the abundance and biomass ranged from 23.1 to 2160.64 ind. m⁻³, and from 0.76 to 35.16 mg dwt m⁻³, respectively. The mesozooplankton community was numerically dominated by copepods, pteropods, and ostracods during both surveys. The abundance and biomass of Themisto gaudichaudii in the region of investigation was < 0.2 ind. m⁻³ (range 0.01 to 0.15 ind. m⁻³) and < 0.06 mg dwt m⁻³ (range 0.02 to 0.06 mg dwt m⁻³) during 2004, while in 2005 the abundance and biomass of the amphipod ranged from < 0.01 to 0.2 ind. m⁻³ and < 0.01 to 0.04 mg dwt m⁻³, respectively. These values correspond to < 1% of the total mesozooplankton abundance and biomass during both surveys. T. gaudichaudii exhibited no significant spatial patterns in abundance, biomass and total length during both 2004 and 2005 (p > 0.05 in all cases). A key feature of the two investigations was the virtual absence of juveniles (total length < 15 mm) among the amphipod population, supporting the suggestion that they exhibit strong seasonal patterns in reproduction. Gut content analysis during both years indicated that for both the male and female amphipods’, copepods were the most prevalent prey species found in stomachs, followed by chaetognaths and pteropods. Results of electivity studies indicate that T. gaudichaudii is an opportunistic predator, generally feeding on the most abundant mesozooplankton prey. Results of in vitro incubations indicated that the total daily feeding rate of T. gaudichaudii during 2004 ranged from 11.45 to 20.90 ind. m⁻³ d⁻¹, which corresponds to between 0.12 and 1.64% of the total mesozooplankton standing stock. In 2005, the feeding rate ranged between 0.1 and 1.73% of the total mesozooplankton standing stock. The low predation impact of T. gaudichaudii during this study can be related to their low abundances and high interannual variability throughout the region of investigation.
- Full Text:
- Authors: Lange, Louise
- Date: 2006
- Subjects: Themisto gaudichaudii -- Antarctic Ocean , Hyperiidae -- Antarctic Ocean , Zooplankton -- Antarctic Ocean
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5696 , http://hdl.handle.net/10962/d1005382 , Themisto gaudichaudii -- Antarctic Ocean , Hyperiidae -- Antarctic Ocean , Zooplankton -- Antarctic Ocean
- Description: The population structure and feeding dynamics of the hyperiid amphipod, Themisto gaudichaudii, was investigated during two cruises of the South African National Antarctic Programme conducted in the Indian sector of the Polar Frontal Zone during austral autumn (April) 2004 and 2005. During the 2004 cruise the frontal features that delimit the PFZ converged to form a single distinctive feature. In 2005, the research cruise was conducted in the vicinity of a cold-core eddy which was spawned from the Antarctic Polar Front. Total mesozooplankton abundance and biomass during the 2004 study ranged from 55.19 to 860.57 ind. m⁻³, and from 2.60 to 38.42 mg dwt m⁻³, respectively. In 2005 the abundance and biomass ranged from 23.1 to 2160.64 ind. m⁻³, and from 0.76 to 35.16 mg dwt m⁻³, respectively. The mesozooplankton community was numerically dominated by copepods, pteropods, and ostracods during both surveys. The abundance and biomass of Themisto gaudichaudii in the region of investigation was < 0.2 ind. m⁻³ (range 0.01 to 0.15 ind. m⁻³) and < 0.06 mg dwt m⁻³ (range 0.02 to 0.06 mg dwt m⁻³) during 2004, while in 2005 the abundance and biomass of the amphipod ranged from < 0.01 to 0.2 ind. m⁻³ and < 0.01 to 0.04 mg dwt m⁻³, respectively. These values correspond to < 1% of the total mesozooplankton abundance and biomass during both surveys. T. gaudichaudii exhibited no significant spatial patterns in abundance, biomass and total length during both 2004 and 2005 (p > 0.05 in all cases). A key feature of the two investigations was the virtual absence of juveniles (total length < 15 mm) among the amphipod population, supporting the suggestion that they exhibit strong seasonal patterns in reproduction. Gut content analysis during both years indicated that for both the male and female amphipods’, copepods were the most prevalent prey species found in stomachs, followed by chaetognaths and pteropods. Results of electivity studies indicate that T. gaudichaudii is an opportunistic predator, generally feeding on the most abundant mesozooplankton prey. Results of in vitro incubations indicated that the total daily feeding rate of T. gaudichaudii during 2004 ranged from 11.45 to 20.90 ind. m⁻³ d⁻¹, which corresponds to between 0.12 and 1.64% of the total mesozooplankton standing stock. In 2005, the feeding rate ranged between 0.1 and 1.73% of the total mesozooplankton standing stock. The low predation impact of T. gaudichaudii during this study can be related to their low abundances and high interannual variability throughout the region of investigation.
- Full Text:
Feeding biology of three euphausiid species in the vicinity of the Prince Edward Archipelago (Southern Ocean)
- Authors: Gurney, Leigh Josephine
- Date: 2000
- Subjects: Euphausiacea , Euphausiacea -- Feeding and feeds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5695 , http://hdl.handle.net/10962/d1005381 , Euphausiacea , Euphausiacea -- Feeding and feeds
- Description: The feeding biology of three euphausiid species, Euphausia vallentini (adults and juveniles), E. longirostris and Nematoscelis megalops was investigated during austral autumn (April/May) of 1998 and 1999, in the vicinity of the Prince Edward Islands (Southern Ocean). Data on the abundance and biomass of these species, estimated from bongo net tows, were investigated. Trophic position was assessed using gut contents and stable nitrogen isotope measurements. Feeding rate and daily carbon ration were estimated using the gut fluorescence and the gut fullness techniques. Vertical migrations into the surface waters at night were found to be strong for Euphausia vallentini adults and juveniles. Associated with these migrations were clear diel feeding patterns. Insufficient data during daylight hours for E. longirostris made it impossible to determine diel feeding patterns, but high feeding activity did occur during dark hours. Nematoscelis megalops did not show any distinct diel feeding pattern, but slightly higher gut fullness indices in the late afternoon suggested that feeding activity may have been highest during this period. For both Euphausia spp. high gut pigment levels were recorded in 1999, which corresponded to higher ambient chlorophyll a concentrations for that year. Highest initial gut pigment levels and highest ingestion rates were found for Euphausia longirostris in both years and lowest values were observed for N. megalops. High phytoplankton and low metazoan contributions to the diet of Euphausia vallentini juveniles, as shown in the gut content analysis, and low stable nitrogen isotope ratios (ð¹⁵N = 1.39±0.31), both indicated that this group was principally herbivorous. The results of gut content analysis of the adults of E. vallentini were similar to those of the juveniles, however, stable nitrogen isotope results showed that there was a higher degree of omnivory (ð¹⁵N = 3.81±0.66). Daily ration estimates from the gut fluorescence and fullness techniques showed that between 3.3 and 25.7 % of E. vallentini adults total daily carbon ration was derived from autotrophic sources. Although the contribution of carnivory to the diet was difficult to determine, the adults of this species may be considered omnivorous. Irrespective of the degree of carnivory, a dietry shift with an increase in size was evident for this species. Gut content analysis for Euphausia longirostris showed that this species consumed large amounts of both phytoplankton and metazoan prey and this was reflected in the stable nitrogen isotope results (ð¹⁵N = 6.88±0.60). These findings were supported by the results of the daily carbon ration estimates which showed that autotrophic carbon contributed between 6.9 and 20.3 % of the daily carbon consumption. The gut content analysis suggested that N. megalops was omnivorous, and the stable nitrogen isotope results place it in a trophic position equivalent to that of E. longirostris (ð¹⁵N = 6.83±0.78). Calculations from daily ration estimates suggested that only 3.1 % in 1998, and 3.2 % in 1999, of the carbon ingested was of autotrophic origin. This species may therefore be considered carnivorous. Implications of the findings of this study are discussed in terms of carbon cycling in the Southern Ocean.
- Full Text:
- Authors: Gurney, Leigh Josephine
- Date: 2000
- Subjects: Euphausiacea , Euphausiacea -- Feeding and feeds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5695 , http://hdl.handle.net/10962/d1005381 , Euphausiacea , Euphausiacea -- Feeding and feeds
- Description: The feeding biology of three euphausiid species, Euphausia vallentini (adults and juveniles), E. longirostris and Nematoscelis megalops was investigated during austral autumn (April/May) of 1998 and 1999, in the vicinity of the Prince Edward Islands (Southern Ocean). Data on the abundance and biomass of these species, estimated from bongo net tows, were investigated. Trophic position was assessed using gut contents and stable nitrogen isotope measurements. Feeding rate and daily carbon ration were estimated using the gut fluorescence and the gut fullness techniques. Vertical migrations into the surface waters at night were found to be strong for Euphausia vallentini adults and juveniles. Associated with these migrations were clear diel feeding patterns. Insufficient data during daylight hours for E. longirostris made it impossible to determine diel feeding patterns, but high feeding activity did occur during dark hours. Nematoscelis megalops did not show any distinct diel feeding pattern, but slightly higher gut fullness indices in the late afternoon suggested that feeding activity may have been highest during this period. For both Euphausia spp. high gut pigment levels were recorded in 1999, which corresponded to higher ambient chlorophyll a concentrations for that year. Highest initial gut pigment levels and highest ingestion rates were found for Euphausia longirostris in both years and lowest values were observed for N. megalops. High phytoplankton and low metazoan contributions to the diet of Euphausia vallentini juveniles, as shown in the gut content analysis, and low stable nitrogen isotope ratios (ð¹⁵N = 1.39±0.31), both indicated that this group was principally herbivorous. The results of gut content analysis of the adults of E. vallentini were similar to those of the juveniles, however, stable nitrogen isotope results showed that there was a higher degree of omnivory (ð¹⁵N = 3.81±0.66). Daily ration estimates from the gut fluorescence and fullness techniques showed that between 3.3 and 25.7 % of E. vallentini adults total daily carbon ration was derived from autotrophic sources. Although the contribution of carnivory to the diet was difficult to determine, the adults of this species may be considered omnivorous. Irrespective of the degree of carnivory, a dietry shift with an increase in size was evident for this species. Gut content analysis for Euphausia longirostris showed that this species consumed large amounts of both phytoplankton and metazoan prey and this was reflected in the stable nitrogen isotope results (ð¹⁵N = 6.88±0.60). These findings were supported by the results of the daily carbon ration estimates which showed that autotrophic carbon contributed between 6.9 and 20.3 % of the daily carbon consumption. The gut content analysis suggested that N. megalops was omnivorous, and the stable nitrogen isotope results place it in a trophic position equivalent to that of E. longirostris (ð¹⁵N = 6.83±0.78). Calculations from daily ration estimates suggested that only 3.1 % in 1998, and 3.2 % in 1999, of the carbon ingested was of autotrophic origin. This species may therefore be considered carnivorous. Implications of the findings of this study are discussed in terms of carbon cycling in the Southern Ocean.
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Mesozooplankton community structure in the vicinity of the Prince Edward Islands (Southern Ocean) 37⁰ 50'E, 46⁰ 45'S
- Authors: Hunt, Brian Peter Vere
- Date: 2000
- Subjects: Zooplankton , Zooplankton -- Prince Edward Islands , Phytoplankton , Chlorophyll
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5732 , http://hdl.handle.net/10962/d1005418 , Zooplankton , Zooplankton -- Prince Edward Islands , Phytoplankton , Chlorophyll
- Description: Mesozooplankton community structure in the vicinity of the Prince Edward Islands (PEIs) was investigated during six surveys conducted in late austral summer (April/May), 1996 to 1999. Each year zooplankton samples were collected with a bongo net (300 µm mesh) at stations upstream (west), between and downstream (east) of the islands. Chlorophyll a concentrations were determined fluorometrically, corresponding with each net tow. The positions of the Subantarctic Front (SAF) and the Antarctic Polar Front (APF), in relation to the islands in the upstream region, were determined by a line of CTD and/or XBT stations. Both the SAF and the APF were characterised by a high degree of meridional variation in position. Changes in position of the fronts were shown to occur very rapidly. In 1999 the APF moved southwards by ~40nm and the SAF northwards by ~60nm in a period of two weeks, while in 1996 the SAF appeared to move ~120nm northwards in a two week period. The positions of the SAF and APF appeared to have a significant impact on phytoplankton biomass in the vicinity of the PEIs, through the alteration of local flow dynamics. Water retention in 1996, associated with the location of the SAF and APF far to the north and south of the PEIs respectively, corresponded with high chlorophyll a concentrations in the inter-island region (reaching 1.54 mg.m^(-3)). When the fronts were close to the islands, in 1997 and 1999, and a flow through environment existed, chlorophyll a concentrations in the inter-island region were comparatively low. Although biomass enhancement was only observed at the SAF in 1996, phytoplankton size structure in 1999 indicated that, when close to the PEIs, frontal production may be transported to the island system. This is potentially an important source of allochthonous input into the island system. Zooplankton assemblages were a mix of sub-Antarctic and Antarctic communities, with a weak presence of sub-tropical species. Cluster analysis showed that during each survey the region in the vicinity of the PEIs was divided into different, spatially separated zooplankton communities, associated with water masses of different origins. These communities were identified by variations in the abundance and biomass of species rather than variation in species composition and, in general, there was a relatively high degree of similarity both within and between surveys. Inter-annual community analysis revealed that, in many cases, there was greater similarity between communities from different years than communities within years, indicating that short-term variability exceeded inter-annual variability. Multiple regression analysis showed that the major correlate with zooplankton community structure during all surveys was sea temperature, accounting for as much as 77% of the variation in community structure. Temperature was indicative of the relative contribution of sub-Antarctic and Antarctic communities, with low temperatures being characterised by an increased predominance of Antarctic communities and vice versa. The differentiation between sub-Antarctic and Antarctic waters, and their respective communities, was particularly pronounced when the SAF and APF were in close proximity to the islands. Surface salinity and sounding had limited effect on community structure. The affect of sounding was intrinsically related to zooplankton interaction with the island ecosystem. Predation by the islands' land based predators and benthic fish appears to decrease zooplankton biomass over the island shelf, particularly the macrozooplankton size fraction. However, this may only be an important factor under conditions of water retention when replenishment of zooplankton stocks is low. The low densities of many macrozooplankton species, and other deep migrators, on the island shelf may be due to their limited advection onto shallow topography. By contrast, there are indications that zooplankton species occurring at shallower depths may be concentrated in the inter-island region by mesoscale flow patterns. Analysis of the population structure of the copepod Calanus simillimus showed that this species occurred at different stages in its life cycle during different years, even though sampling took place in the same calendar months, indicating that there was inter-annual variation in the timing of the biological season. Differences in the population structure of species, and consequently their contribution to abundance and biomass, may therefore have been an important contributor to inter-annual variation in community structure. Evidence is provided for a long-term trend of southward movement of the SAF. This may have a significant affect on the PEI ecosystem, increasing the proportion of allochthonous input and altering the tropho-dynamics of the island ecosystem
- Full Text:
- Authors: Hunt, Brian Peter Vere
- Date: 2000
- Subjects: Zooplankton , Zooplankton -- Prince Edward Islands , Phytoplankton , Chlorophyll
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5732 , http://hdl.handle.net/10962/d1005418 , Zooplankton , Zooplankton -- Prince Edward Islands , Phytoplankton , Chlorophyll
- Description: Mesozooplankton community structure in the vicinity of the Prince Edward Islands (PEIs) was investigated during six surveys conducted in late austral summer (April/May), 1996 to 1999. Each year zooplankton samples were collected with a bongo net (300 µm mesh) at stations upstream (west), between and downstream (east) of the islands. Chlorophyll a concentrations were determined fluorometrically, corresponding with each net tow. The positions of the Subantarctic Front (SAF) and the Antarctic Polar Front (APF), in relation to the islands in the upstream region, were determined by a line of CTD and/or XBT stations. Both the SAF and the APF were characterised by a high degree of meridional variation in position. Changes in position of the fronts were shown to occur very rapidly. In 1999 the APF moved southwards by ~40nm and the SAF northwards by ~60nm in a period of two weeks, while in 1996 the SAF appeared to move ~120nm northwards in a two week period. The positions of the SAF and APF appeared to have a significant impact on phytoplankton biomass in the vicinity of the PEIs, through the alteration of local flow dynamics. Water retention in 1996, associated with the location of the SAF and APF far to the north and south of the PEIs respectively, corresponded with high chlorophyll a concentrations in the inter-island region (reaching 1.54 mg.m^(-3)). When the fronts were close to the islands, in 1997 and 1999, and a flow through environment existed, chlorophyll a concentrations in the inter-island region were comparatively low. Although biomass enhancement was only observed at the SAF in 1996, phytoplankton size structure in 1999 indicated that, when close to the PEIs, frontal production may be transported to the island system. This is potentially an important source of allochthonous input into the island system. Zooplankton assemblages were a mix of sub-Antarctic and Antarctic communities, with a weak presence of sub-tropical species. Cluster analysis showed that during each survey the region in the vicinity of the PEIs was divided into different, spatially separated zooplankton communities, associated with water masses of different origins. These communities were identified by variations in the abundance and biomass of species rather than variation in species composition and, in general, there was a relatively high degree of similarity both within and between surveys. Inter-annual community analysis revealed that, in many cases, there was greater similarity between communities from different years than communities within years, indicating that short-term variability exceeded inter-annual variability. Multiple regression analysis showed that the major correlate with zooplankton community structure during all surveys was sea temperature, accounting for as much as 77% of the variation in community structure. Temperature was indicative of the relative contribution of sub-Antarctic and Antarctic communities, with low temperatures being characterised by an increased predominance of Antarctic communities and vice versa. The differentiation between sub-Antarctic and Antarctic waters, and their respective communities, was particularly pronounced when the SAF and APF were in close proximity to the islands. Surface salinity and sounding had limited effect on community structure. The affect of sounding was intrinsically related to zooplankton interaction with the island ecosystem. Predation by the islands' land based predators and benthic fish appears to decrease zooplankton biomass over the island shelf, particularly the macrozooplankton size fraction. However, this may only be an important factor under conditions of water retention when replenishment of zooplankton stocks is low. The low densities of many macrozooplankton species, and other deep migrators, on the island shelf may be due to their limited advection onto shallow topography. By contrast, there are indications that zooplankton species occurring at shallower depths may be concentrated in the inter-island region by mesoscale flow patterns. Analysis of the population structure of the copepod Calanus simillimus showed that this species occurred at different stages in its life cycle during different years, even though sampling took place in the same calendar months, indicating that there was inter-annual variation in the timing of the biological season. Differences in the population structure of species, and consequently their contribution to abundance and biomass, may therefore have been an important contributor to inter-annual variation in community structure. Evidence is provided for a long-term trend of southward movement of the SAF. This may have a significant affect on the PEI ecosystem, increasing the proportion of allochthonous input and altering the tropho-dynamics of the island ecosystem
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The influence of oceanographic conditions and culture methods on the dynamics of mussel farming in Saldanha Bay, South Africa
- Authors: Heasman, Kevin Gerald
- Date: 1996
- Subjects: Mytilidae -- South Africa , Mussel culture -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5290 , http://hdl.handle.net/10962/d1005134 , Mytilidae -- South Africa , Mussel culture -- South Africa
- Description: The principal aim of this study was to establish the biological and environmental parameters governing the successful and sustainable cultivation of mussels in Saldanha Bay. The environmental study investigated seston, chlorophyll-a and particulate organic matter (POM) levels, water temperature dissolved oxygen and salinity levels in the bay and water flow in and around the rafts. The biological part of the study investigated the efficiency of food extraction, growth rates, mussel condition, fouling and production and yield on a rope, raft and farm scale. Saldanha Bay is well suited for the culture of mussels, particularly Mytilus galloprovincialis and Choromytilus meridionalis. Water temperature and salinity in Saldanha Bay were found to be near optimal for mussel culture. POM and chlorophyll-a levels were found to be high due to primary production resulting from the nutrient rich upwelled water outside Saldanha Bay. The mean levels of chlorophyll-a (8,6μg/l) represent 6%, by mass, of the total POM. On a bay scale the POM remained above the mussels maximum requirements (pseudofaeces threshold) during the study period. Mussels showed a preference for the phytoplankton portion of the POM. Approximately 40% of the chlorophyll-a was extracted from the water by the mussel farm. The efficiency of food extraction increased with mussel age. Rafts with seed mussels younger than 2 months, 3 to 4 months, 5 to 6 months and older than 6 months extracted 32%, 55%, 85% and 92% of the available chlorophyll-a respectively. An increase of rope spacing on the rafts resulted in 37% more chlorophyll-a and 30% more particle volume reaching the lee of the raft. Ambient water currents in the bay show flow rates of up to 22cm per second. However, on entering a raft with a rope spacing of 60cm, the water flow is attenuated by 90%. Increasing the rope spacing to 90cm resulted in a water flow attenuation of 72%. The increase in rope spacing ensures that the mussels in the centre of the raft are feeding on food levels close to, or above, the pseudofaeces level. Mussel growth rate at a rope spacing of 90cm is significantly improved as a result of the increased food delivery. There are other factors, however that effect mussel growth. Growth rates were found to be better in summer than in winter. The reduced winter growth rate is possibly due to competition with the maturing fouling organisms which settle in mid to late summer. Fouling by mussel spat and Ciona intestinalis is seasonal, occurring from December to May. C.intestinalis is prevalent in the centre of the farm and rafts as low energy waters are preferred by this species. Mussel spat settles mainly on the periphery of the farm and the rafts. Competition with fouling organisms reduces growth and increases mortality of the cultured mussels. Results indicate that the present spacing of rafts, (1 raft per hectare) is adequate under existing conditions. Any new farms should maintain batches of 50 rafts with channels between them to ensure water current penetration into the furthest reaches of the farm. Rope spacing on the rafts should be increased to between 60cm and 90cm. Mussel density should be regulated according to mussel size and fouling should be controlled to maintain yields.
- Full Text:
- Authors: Heasman, Kevin Gerald
- Date: 1996
- Subjects: Mytilidae -- South Africa , Mussel culture -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5290 , http://hdl.handle.net/10962/d1005134 , Mytilidae -- South Africa , Mussel culture -- South Africa
- Description: The principal aim of this study was to establish the biological and environmental parameters governing the successful and sustainable cultivation of mussels in Saldanha Bay. The environmental study investigated seston, chlorophyll-a and particulate organic matter (POM) levels, water temperature dissolved oxygen and salinity levels in the bay and water flow in and around the rafts. The biological part of the study investigated the efficiency of food extraction, growth rates, mussel condition, fouling and production and yield on a rope, raft and farm scale. Saldanha Bay is well suited for the culture of mussels, particularly Mytilus galloprovincialis and Choromytilus meridionalis. Water temperature and salinity in Saldanha Bay were found to be near optimal for mussel culture. POM and chlorophyll-a levels were found to be high due to primary production resulting from the nutrient rich upwelled water outside Saldanha Bay. The mean levels of chlorophyll-a (8,6μg/l) represent 6%, by mass, of the total POM. On a bay scale the POM remained above the mussels maximum requirements (pseudofaeces threshold) during the study period. Mussels showed a preference for the phytoplankton portion of the POM. Approximately 40% of the chlorophyll-a was extracted from the water by the mussel farm. The efficiency of food extraction increased with mussel age. Rafts with seed mussels younger than 2 months, 3 to 4 months, 5 to 6 months and older than 6 months extracted 32%, 55%, 85% and 92% of the available chlorophyll-a respectively. An increase of rope spacing on the rafts resulted in 37% more chlorophyll-a and 30% more particle volume reaching the lee of the raft. Ambient water currents in the bay show flow rates of up to 22cm per second. However, on entering a raft with a rope spacing of 60cm, the water flow is attenuated by 90%. Increasing the rope spacing to 90cm resulted in a water flow attenuation of 72%. The increase in rope spacing ensures that the mussels in the centre of the raft are feeding on food levels close to, or above, the pseudofaeces level. Mussel growth rate at a rope spacing of 90cm is significantly improved as a result of the increased food delivery. There are other factors, however that effect mussel growth. Growth rates were found to be better in summer than in winter. The reduced winter growth rate is possibly due to competition with the maturing fouling organisms which settle in mid to late summer. Fouling by mussel spat and Ciona intestinalis is seasonal, occurring from December to May. C.intestinalis is prevalent in the centre of the farm and rafts as low energy waters are preferred by this species. Mussel spat settles mainly on the periphery of the farm and the rafts. Competition with fouling organisms reduces growth and increases mortality of the cultured mussels. Results indicate that the present spacing of rafts, (1 raft per hectare) is adequate under existing conditions. Any new farms should maintain batches of 50 rafts with channels between them to ensure water current penetration into the furthest reaches of the farm. Rope spacing on the rafts should be increased to between 60cm and 90cm. Mussel density should be regulated according to mussel size and fouling should be controlled to maintain yields.
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