Zooplankton dynamics of Algoa Bay (South Africa) under varying oceanographic conditions
- Authors: Bizani,Mfundo
- Date: 2022-04
- Subjects: Marine zooplankton -- South Africa , Climate changes
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55943 , vital:54554
- Description: the ecological significance of ocean plankton in terms of nutrient cycling and energy transfer is widely recognised, as is their mechanistic link with both oceanographic processes and climate. Consequently, plankton are widely regarded as sentinels of climate change, principally owing to their responsiveness to changing environmental conditions. Developing an understanding of the ecological as well as socio-economic consequences associated with changes in marine plankton dynamics has emerged as a key issue worldwide. Though many exciting advances in this respect have been attained with the aid of long-term plankton time series (>50 y), global environmental datasets and innovative meta-analyses, building deep knowledge of regional bio-physical dynamics and responses to specific perturbed states remains an essential component of the collective effort. Algoa Bay, situated on the warmtemperate south-east coast of South Africa presents a unique opportunity to study key elements of plankton ecology relevant to climate change problems in the regional sense. The embayment is locally subjected to frequent wind-driven upwelling and regionally, to periodic mesoscale oceanographic forcing (e.g., large solitary meanders, Agulhas Current intrusions), all of which culminate in a complex physical and biogeochemical environment. Using zooplankton as the focal component and drawing from a multi-year monthly dataset incorporating a bay-scale sampling framework, the present study addressed three key hypotheses pertaining to 1) drivers of spatio-temporal variability, 2) biomass rate of change over temporal scales using time-series analyses, and 3) community responses to a bay-scale biological perturbation event. Zooplankton biomass exhibited prominent seasonal patterns with bimodal peaks corresponding with near-consistent year-to-year autumn and spring blooms. Overall, the spatial trend showed no heterogeneity, though statistical significance between-station variability was noted per season. An analytical framework involving generalised additive models revealed zooplankton spatial heterogeneity in Algoa Bay to be a function of seasonal variation in a suite of physicochemical variables, including the combined effects of temperature, salinity, dissolved oxygen, total nitrogen and silicate, but not ammonium, phosphate or chlorophyll-a (as proxy for phytoplankton). Fronts (including river plumes), warm water intrusion from the Agulhas Current, and wind-driven upwelling were postulated to be key driving forces. Structural breaks analysis performed on station-specific time series revealed significant incremental increases in zooplankton biomass over time, which in turn, corresponded with a gradual decrease in thermocline depth. The most pronounced increasing effect was associated with a period (2013– 14) of amplified land-derived nutrient input and increasing harmful algal bloom (HAB) activity. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Bizani,Mfundo
- Date: 2022-04
- Subjects: Marine zooplankton -- South Africa , Climate changes
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55943 , vital:54554
- Description: the ecological significance of ocean plankton in terms of nutrient cycling and energy transfer is widely recognised, as is their mechanistic link with both oceanographic processes and climate. Consequently, plankton are widely regarded as sentinels of climate change, principally owing to their responsiveness to changing environmental conditions. Developing an understanding of the ecological as well as socio-economic consequences associated with changes in marine plankton dynamics has emerged as a key issue worldwide. Though many exciting advances in this respect have been attained with the aid of long-term plankton time series (>50 y), global environmental datasets and innovative meta-analyses, building deep knowledge of regional bio-physical dynamics and responses to specific perturbed states remains an essential component of the collective effort. Algoa Bay, situated on the warmtemperate south-east coast of South Africa presents a unique opportunity to study key elements of plankton ecology relevant to climate change problems in the regional sense. The embayment is locally subjected to frequent wind-driven upwelling and regionally, to periodic mesoscale oceanographic forcing (e.g., large solitary meanders, Agulhas Current intrusions), all of which culminate in a complex physical and biogeochemical environment. Using zooplankton as the focal component and drawing from a multi-year monthly dataset incorporating a bay-scale sampling framework, the present study addressed three key hypotheses pertaining to 1) drivers of spatio-temporal variability, 2) biomass rate of change over temporal scales using time-series analyses, and 3) community responses to a bay-scale biological perturbation event. Zooplankton biomass exhibited prominent seasonal patterns with bimodal peaks corresponding with near-consistent year-to-year autumn and spring blooms. Overall, the spatial trend showed no heterogeneity, though statistical significance between-station variability was noted per season. An analytical framework involving generalised additive models revealed zooplankton spatial heterogeneity in Algoa Bay to be a function of seasonal variation in a suite of physicochemical variables, including the combined effects of temperature, salinity, dissolved oxygen, total nitrogen and silicate, but not ammonium, phosphate or chlorophyll-a (as proxy for phytoplankton). Fronts (including river plumes), warm water intrusion from the Agulhas Current, and wind-driven upwelling were postulated to be key driving forces. Structural breaks analysis performed on station-specific time series revealed significant incremental increases in zooplankton biomass over time, which in turn, corresponded with a gradual decrease in thermocline depth. The most pronounced increasing effect was associated with a period (2013– 14) of amplified land-derived nutrient input and increasing harmful algal bloom (HAB) activity. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
A Geochemical Comparison of Southern African Stromatolites and Stromatolite Pools
- Authors: Dodd, Carla
- Date: 2020
- Subjects: Stromatolites
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48235 , vital:40527
- Description: Microbialite accretion takes place via either mineral precipitation, the trapping and binding of mineral and sediment grains, or a combination of the two. Recently, the geochemistry of carbonate deposits, including microbialites, has been used to reconstruct palaeoenvironments and infer biogenicity. Numerous modern stromatolite (layered microbialites) systems are located on the southern African coastline and are formed predominantly by mineral precipitation with minor detrital input. In order to better understand the environmental and biological processes influencing the formation of microbialites, the geochemistry of southern African coastalstromatolites is examined. This is done by a spatial comparison of the hydrochemistry as well as the major and trace element geochemistry of various coastal stromatolite systems. The influence of the underlying geology on the composition of the stromatolites forms a particular focus of the study. In addition, the effect of metazoans on the micro-fabrics and sediment incorporation into the stromatolite matrix is assessed. Finally, the trace element geochemistry of active, inactive, and ancient stromatolites is compared with a speleothem sample in order to test the validity of using trace elements as a means to determine biogenicity of deposition. Results show that the bulk geochemistry of the South African stromatolites is not a simple function of the associated bedrock lithologies, although certain parallels do exist. It was found that metazoans indirectly influence sediment incorporation by increasing porosity and thereby accommodation space for detrital input. Furthermore, trace element signatures could not be directly attributed to microbial influence in the deposition of the carbonates. Ultimately, this study provides valuable insights into the formation processes of the active South African stromatolites and the use of trace elements as a geochemical tool to investigate the evolution of life and determine past environmental conditions.
- Full Text:
- Date Issued: 2020
- Authors: Dodd, Carla
- Date: 2020
- Subjects: Stromatolites
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48235 , vital:40527
- Description: Microbialite accretion takes place via either mineral precipitation, the trapping and binding of mineral and sediment grains, or a combination of the two. Recently, the geochemistry of carbonate deposits, including microbialites, has been used to reconstruct palaeoenvironments and infer biogenicity. Numerous modern stromatolite (layered microbialites) systems are located on the southern African coastline and are formed predominantly by mineral precipitation with minor detrital input. In order to better understand the environmental and biological processes influencing the formation of microbialites, the geochemistry of southern African coastalstromatolites is examined. This is done by a spatial comparison of the hydrochemistry as well as the major and trace element geochemistry of various coastal stromatolite systems. The influence of the underlying geology on the composition of the stromatolites forms a particular focus of the study. In addition, the effect of metazoans on the micro-fabrics and sediment incorporation into the stromatolite matrix is assessed. Finally, the trace element geochemistry of active, inactive, and ancient stromatolites is compared with a speleothem sample in order to test the validity of using trace elements as a means to determine biogenicity of deposition. Results show that the bulk geochemistry of the South African stromatolites is not a simple function of the associated bedrock lithologies, although certain parallels do exist. It was found that metazoans indirectly influence sediment incorporation by increasing porosity and thereby accommodation space for detrital input. Furthermore, trace element signatures could not be directly attributed to microbial influence in the deposition of the carbonates. Ultimately, this study provides valuable insights into the formation processes of the active South African stromatolites and the use of trace elements as a geochemical tool to investigate the evolution of life and determine past environmental conditions.
- Full Text:
- Date Issued: 2020
Micro-structures, mineralogy, and chemistry of peritidal tufa stromatolites along the Eastern Cape coast
- Edwards, Mark Joseph Kalahari, Rishworth, Gavin M
- Authors: Edwards, Mark Joseph Kalahari , Rishworth, Gavin M
- Date: 2019
- Subjects: Mineralogy -- Analysis -- South Africa , Environmental forensics Environmental chemistry Stromatolites
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39896 , vital:35503
- Description: Peritidal tufa microbialites occurring along the coast near Port Elizabeth, South Africa have been investigated from multiple disciplines and are found to be similar to supratidal tufa deposits in South West Australia. Studies have been conducted on the biological factors, geomorphology, ecosystems, and associated water chemistry. However, to date no mineralogical, micro-fabric, or geochemical analyses have been reported on these tufa deposits. This work, carried out at a previously well-studied area, provides the first study of this kind on the tufa. Chapter 1 is a mineralogical and micro-fabric analysis of the tufa deposits near Port Elizabeth for the purpose of classification and contextualisation. Chapter 2 provides the first geochemical study of these peritidal microbialites. X-Ray diffraction (XRD) investigations reveal dominance of low-Mg calcite in the mineral make-up of the tufa. A micro-structure analysis via thin section exposes a number of fabrics, suggesting various micro-facies: phytoherm boundstone (layered), phytoherm framestone (non-layered), lithoclast, and minor metazoan tufa. Scanning electron microscopy (SEM) images show micro- to nano- scale variation in calcite grains and epitaxial forms of needlefibre calcite (NFC). The elemental composition of the tufa deposits were examined by X-ray fluorescence (XRF), Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICPMS), and Scanning Electron Microscopy / Energy Dispersive X-Ray Spectroscopy (SEM/EDS). XRF and LA-ICP-MS were used to analyse the bulk rock chemistry while SEM/EDS was used to scrutinize specific areas within the tufa. These observations suggest the deposits are better classified as tufa microbialites (rather than exclusively “stromatolites”) and outline similarities and disparities to the micro-fabrics of supratidal tufa deposits in South West Australia, and Cape Morgan, South Africa. Here the Port Elizabeth tufa is shown to be similar, in terms of the dominant elements (O, Ca and to a lesser extent, Mg and Sr), to the Australian deposits despite subtle dissimilarities in water chemistry. Increasing trends toward more marine tufa for many elements are also shown here and can be explained by the interaction with increased amounts of sedimentary products and/or interactions with more saline water that contains a higher TDS (Total Dissolved Salts). This is also the first study to report needle-fibre calcite formation in stromatolites and the first to geochemically analyse modern peritidal microbialites.
- Full Text:
- Date Issued: 2019
- Authors: Edwards, Mark Joseph Kalahari , Rishworth, Gavin M
- Date: 2019
- Subjects: Mineralogy -- Analysis -- South Africa , Environmental forensics Environmental chemistry Stromatolites
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/39896 , vital:35503
- Description: Peritidal tufa microbialites occurring along the coast near Port Elizabeth, South Africa have been investigated from multiple disciplines and are found to be similar to supratidal tufa deposits in South West Australia. Studies have been conducted on the biological factors, geomorphology, ecosystems, and associated water chemistry. However, to date no mineralogical, micro-fabric, or geochemical analyses have been reported on these tufa deposits. This work, carried out at a previously well-studied area, provides the first study of this kind on the tufa. Chapter 1 is a mineralogical and micro-fabric analysis of the tufa deposits near Port Elizabeth for the purpose of classification and contextualisation. Chapter 2 provides the first geochemical study of these peritidal microbialites. X-Ray diffraction (XRD) investigations reveal dominance of low-Mg calcite in the mineral make-up of the tufa. A micro-structure analysis via thin section exposes a number of fabrics, suggesting various micro-facies: phytoherm boundstone (layered), phytoherm framestone (non-layered), lithoclast, and minor metazoan tufa. Scanning electron microscopy (SEM) images show micro- to nano- scale variation in calcite grains and epitaxial forms of needlefibre calcite (NFC). The elemental composition of the tufa deposits were examined by X-ray fluorescence (XRF), Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICPMS), and Scanning Electron Microscopy / Energy Dispersive X-Ray Spectroscopy (SEM/EDS). XRF and LA-ICP-MS were used to analyse the bulk rock chemistry while SEM/EDS was used to scrutinize specific areas within the tufa. These observations suggest the deposits are better classified as tufa microbialites (rather than exclusively “stromatolites”) and outline similarities and disparities to the micro-fabrics of supratidal tufa deposits in South West Australia, and Cape Morgan, South Africa. Here the Port Elizabeth tufa is shown to be similar, in terms of the dominant elements (O, Ca and to a lesser extent, Mg and Sr), to the Australian deposits despite subtle dissimilarities in water chemistry. Increasing trends toward more marine tufa for many elements are also shown here and can be explained by the interaction with increased amounts of sedimentary products and/or interactions with more saline water that contains a higher TDS (Total Dissolved Salts). This is also the first study to report needle-fibre calcite formation in stromatolites and the first to geochemically analyse modern peritidal microbialites.
- Full Text:
- Date Issued: 2019
Assessment of the microalgal community structure and biomass in surface waterbodies of the Eastern Cape Karoo region earmarked for shale gas exploration
- Authors: Roussouw, Natasha Kimberlee
- Date: 2018
- Subjects: Fresh water -- Eastern Cape , Water-supply -- South Africa -- Eastern Cape Water-supply, Rural -- South Africa -- Eastern Cape Constructed wetlands Watershed management
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/35234 , vital:33655
- Description: The Eastern Cape Karoo region of South Africa typically displays low rainfall and high temperatures, which is particularly concerning considering the shale gas exploration/extraction project proposed recently. Almost 90% of the fracking fluid consists of water and with the Karoo region already classified as a water-stressed region, the increased demand for freshwater for fracking could put further pressure on water resources of the region. By understanding the ecological functioning of the lower trophic levels, likely implications for higher trophic levels can be determined, and ultimately, recommendations for mitigation actions can be made. Here, observations aimed at understanding the dynamics of lower trophic levels are presented, that is, the microalgal biomass and assemblage composition within three characteristic surface waterbodies of the region. In addition, the work focuses on the smaller, more dynamic temporary wetland systems typical of this water-scarce region, with the aim of understanding the significance of single species macrophyte cover in relation to the lower trophic levels. Thirty-three waterbodies were sampled (natural depressions = 13, dams = 9, rivers = 11) during November 2014 (austral spring) and April 2015 (austral autumn). Waterbody physico-chemistry, hydro-morphometry, habitat cover and surrounding land-use, as well as microalgal biomass and assemblage composition within each waterbody type were measured. Thirteen natural depression wetlands were sampled during October 2015, December 2015 and March 2016. Once again, waterbody physico-chemistry, microalgal biomass and assemblage composition were measured. However, in addition, Schoenoplectus decipiens macrophyte cover and microalgal (diatom) species composition were also determined. In general, no significant differences in microalgal biomass between the three main waterbody types of the Eastern Cape Karoo region were found; however, the different waterbody types each displayed distinct microalgal assemblage compositions. Also, Schoenoplectus decipiens cover had negligible effects on microalgal biomass and assemblages in the temporary wetlands investigated here. These results suggest that the generalist nature of species occupying these systems allows them to adapt to the ever-changing conditions typical of this region. Ongoing monitoring initiatives considering impending hydraulic fracturing activities should include a comprehensive species-level diversity census, which could further inform management of any impacts associated with this potential disturbance.
- Full Text:
- Date Issued: 2018
- Authors: Roussouw, Natasha Kimberlee
- Date: 2018
- Subjects: Fresh water -- Eastern Cape , Water-supply -- South Africa -- Eastern Cape Water-supply, Rural -- South Africa -- Eastern Cape Constructed wetlands Watershed management
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/35234 , vital:33655
- Description: The Eastern Cape Karoo region of South Africa typically displays low rainfall and high temperatures, which is particularly concerning considering the shale gas exploration/extraction project proposed recently. Almost 90% of the fracking fluid consists of water and with the Karoo region already classified as a water-stressed region, the increased demand for freshwater for fracking could put further pressure on water resources of the region. By understanding the ecological functioning of the lower trophic levels, likely implications for higher trophic levels can be determined, and ultimately, recommendations for mitigation actions can be made. Here, observations aimed at understanding the dynamics of lower trophic levels are presented, that is, the microalgal biomass and assemblage composition within three characteristic surface waterbodies of the region. In addition, the work focuses on the smaller, more dynamic temporary wetland systems typical of this water-scarce region, with the aim of understanding the significance of single species macrophyte cover in relation to the lower trophic levels. Thirty-three waterbodies were sampled (natural depressions = 13, dams = 9, rivers = 11) during November 2014 (austral spring) and April 2015 (austral autumn). Waterbody physico-chemistry, hydro-morphometry, habitat cover and surrounding land-use, as well as microalgal biomass and assemblage composition within each waterbody type were measured. Thirteen natural depression wetlands were sampled during October 2015, December 2015 and March 2016. Once again, waterbody physico-chemistry, microalgal biomass and assemblage composition were measured. However, in addition, Schoenoplectus decipiens macrophyte cover and microalgal (diatom) species composition were also determined. In general, no significant differences in microalgal biomass between the three main waterbody types of the Eastern Cape Karoo region were found; however, the different waterbody types each displayed distinct microalgal assemblage compositions. Also, Schoenoplectus decipiens cover had negligible effects on microalgal biomass and assemblages in the temporary wetlands investigated here. These results suggest that the generalist nature of species occupying these systems allows them to adapt to the ever-changing conditions typical of this region. Ongoing monitoring initiatives considering impending hydraulic fracturing activities should include a comprehensive species-level diversity census, which could further inform management of any impacts associated with this potential disturbance.
- Full Text:
- Date Issued: 2018
Characterization and ecology of selected micro-estuaries and micro-outlets in the Eastern Cape province, South Africa
- Authors: Magoro, Mandla Leon
- Date: 2018
- Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Estuaries -- Management Estuaries -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/31644 , vital:31640
- Description: South Africa has more than 200 Temporarily Open/Closed Estuaries (TOCEs) along its approximately 3000 km coastline. In addition, there are approximately 200 micro-estuaries and micro-outlets on the subcontinent, many of which share some of the characteristics with TOCEs but differ in that they are supplied by localised coastal stream catchments with a more limited supply of freshwater and less connectivity to the marine environment. Between 2015 and 2016, this study endeavoured to investigate the physico-chemical properties, microalgal dynamics as well as the seasonal species abundance and composition of aquatic invertebrates and fishes in four micro-estuaries and four micro-outlets along the warm-temperate section of the Eastern Cape coast. The micro-outlets were dominated by oligohaline or freshwater conditions, while the micro-estuaries were mostly mesohaline. Microalgal biomass in these systems was influenced by temperature, nutrient conditions and light availability. Chironomidae and Ephemeroptera dominated benthic macro-invertebrate communities in the micro-outlets, while Amphipoda and Mysida were most dominant in micro-estuaries. Copepoda and Amphipoda dominated the zooplankton assemblages in both system types. Nekton communities in micro-outlets were dominated by juvenile Myxus capensis and tadpoles (mostly Xenopus laevis), while Oreochromis mossambicus, Gilchristella aestuaria, M. capensis and Mugil cephalus were the four most common species in the micro-estuaries. Seasonal variations in physico-chemical parameters and community composition of both the nekton and invertebrates were recorded during this study. Micro-estuaries and micro-outlets exhibited relatively lower diversity and abundances of biota than TOCEs. Furthermore, the micro-estuaries have a low estuarine function when compared to TOCEs, while the micro-outlets have very limited estuarine characteristics and were dominated by freshwater biota. The micro-systems are smaller in size and contain lower proportions of estuary-associated taxa when compared to larger estuarine systems such as TOCEs and permanently open estuaries. The results of this study confirm that there are distinctions between the biota of iv the two micro-system types, thus making biotic assemblages, together with physico-chemical parameters, a viable tool for differentiating between micro-estuaries and micro-outlets. This study represents the first investigation into the ecological functioning of micro-estuaries and micro-outlets. As a whole, micro-systems serve as nursery areas for freshwater-associated invertebrate taxa. Due to their limited periods of stability, micro-estuaries serve as intermediate nursery areas for 0+ juveniles of estuary-associated marine fish which, after less than a year, then migrate to larger estuarine systems located nearby. The small catchment size and short period of stability in these systems heightens their level of sensitivity to water flow alterations through dams, direct water abstraction, afforestation and watercourse diversion, while their lower buffering capacity makes them more susceptible to pollution and nutrient inputs from intensive agricultural activities and urban expansion.
- Full Text:
- Date Issued: 2018
- Authors: Magoro, Mandla Leon
- Date: 2018
- Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Estuaries -- Management Estuaries -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/31644 , vital:31640
- Description: South Africa has more than 200 Temporarily Open/Closed Estuaries (TOCEs) along its approximately 3000 km coastline. In addition, there are approximately 200 micro-estuaries and micro-outlets on the subcontinent, many of which share some of the characteristics with TOCEs but differ in that they are supplied by localised coastal stream catchments with a more limited supply of freshwater and less connectivity to the marine environment. Between 2015 and 2016, this study endeavoured to investigate the physico-chemical properties, microalgal dynamics as well as the seasonal species abundance and composition of aquatic invertebrates and fishes in four micro-estuaries and four micro-outlets along the warm-temperate section of the Eastern Cape coast. The micro-outlets were dominated by oligohaline or freshwater conditions, while the micro-estuaries were mostly mesohaline. Microalgal biomass in these systems was influenced by temperature, nutrient conditions and light availability. Chironomidae and Ephemeroptera dominated benthic macro-invertebrate communities in the micro-outlets, while Amphipoda and Mysida were most dominant in micro-estuaries. Copepoda and Amphipoda dominated the zooplankton assemblages in both system types. Nekton communities in micro-outlets were dominated by juvenile Myxus capensis and tadpoles (mostly Xenopus laevis), while Oreochromis mossambicus, Gilchristella aestuaria, M. capensis and Mugil cephalus were the four most common species in the micro-estuaries. Seasonal variations in physico-chemical parameters and community composition of both the nekton and invertebrates were recorded during this study. Micro-estuaries and micro-outlets exhibited relatively lower diversity and abundances of biota than TOCEs. Furthermore, the micro-estuaries have a low estuarine function when compared to TOCEs, while the micro-outlets have very limited estuarine characteristics and were dominated by freshwater biota. The micro-systems are smaller in size and contain lower proportions of estuary-associated taxa when compared to larger estuarine systems such as TOCEs and permanently open estuaries. The results of this study confirm that there are distinctions between the biota of iv the two micro-system types, thus making biotic assemblages, together with physico-chemical parameters, a viable tool for differentiating between micro-estuaries and micro-outlets. This study represents the first investigation into the ecological functioning of micro-estuaries and micro-outlets. As a whole, micro-systems serve as nursery areas for freshwater-associated invertebrate taxa. Due to their limited periods of stability, micro-estuaries serve as intermediate nursery areas for 0+ juveniles of estuary-associated marine fish which, after less than a year, then migrate to larger estuarine systems located nearby. The small catchment size and short period of stability in these systems heightens their level of sensitivity to water flow alterations through dams, direct water abstraction, afforestation and watercourse diversion, while their lower buffering capacity makes them more susceptible to pollution and nutrient inputs from intensive agricultural activities and urban expansion.
- Full Text:
- Date Issued: 2018
Microhabitat and biotic structure of stromatolite formations
- Authors: Weston, Ross-Lynne Alida
- Date: 2018
- Subjects: Stromatolites , Microbial mats Sedimentary structures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17493 , vital:28358
- Description: Stromatolites are among the oldest types of microbial formations. In contrast to their ancient counterparts, many modern marine stromatolites have a coarser internal structure and host a diverse eukaryotic community. Different mesofabric structures are found within stromatolite formations which may provide microhabitat opportunities for organisms. Therefore, the first aim of this study was to investigate how the microalgal (including Bacillariophyta, Chlorophyta and cyanobacteria) community contributes towards the differences observed amongst mesofabric structures in terms of depth profiles and layering at representative stromatolites forming along the Port Elizabeth coastline in South Africa. The second aim was to investigate how the invertebrate community changes between mesofabric types. This was achieved by comparing the proportional abundances of each of the major microalgal classes between the different mesofabric types and depth profiles. Additionally, the invertebrates found within samples collected were identified and counted. These were related to site and environmental characteristics using multivariate modelling. Clear variability in terms of proportional abundance was apparent between microhabitats and with depth. Coarser, more-bioturbated types had a higher bacillariophyte biomass than smoother types. Invertebrate abundance was generally higher in coarser mats. However, one of the finer, well-laminated types had surprisingly more invertebrates than expected, but only in summer. The changes in microalgal and invertebrate community distribution varied seasonally. More microalgae were found in summer and more invertebrates were found in winter. Microalgae distribution was driven by mesofabric features whereas invertebrate distribution was attributed to resource changes. The implications of this study are in terms of the role of microalgae as ecosystem engineers in driving microhabitat differences. The microhabitats provide opportunities for colonisation by invertebrates.
- Full Text:
- Date Issued: 2018
- Authors: Weston, Ross-Lynne Alida
- Date: 2018
- Subjects: Stromatolites , Microbial mats Sedimentary structures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17493 , vital:28358
- Description: Stromatolites are among the oldest types of microbial formations. In contrast to their ancient counterparts, many modern marine stromatolites have a coarser internal structure and host a diverse eukaryotic community. Different mesofabric structures are found within stromatolite formations which may provide microhabitat opportunities for organisms. Therefore, the first aim of this study was to investigate how the microalgal (including Bacillariophyta, Chlorophyta and cyanobacteria) community contributes towards the differences observed amongst mesofabric structures in terms of depth profiles and layering at representative stromatolites forming along the Port Elizabeth coastline in South Africa. The second aim was to investigate how the invertebrate community changes between mesofabric types. This was achieved by comparing the proportional abundances of each of the major microalgal classes between the different mesofabric types and depth profiles. Additionally, the invertebrates found within samples collected were identified and counted. These were related to site and environmental characteristics using multivariate modelling. Clear variability in terms of proportional abundance was apparent between microhabitats and with depth. Coarser, more-bioturbated types had a higher bacillariophyte biomass than smoother types. Invertebrate abundance was generally higher in coarser mats. However, one of the finer, well-laminated types had surprisingly more invertebrates than expected, but only in summer. The changes in microalgal and invertebrate community distribution varied seasonally. More microalgae were found in summer and more invertebrates were found in winter. Microalgae distribution was driven by mesofabric features whereas invertebrate distribution was attributed to resource changes. The implications of this study are in terms of the role of microalgae as ecosystem engineers in driving microhabitat differences. The microhabitats provide opportunities for colonisation by invertebrates.
- Full Text:
- Date Issued: 2018
The effects of environmental variability on the physiology and ecology of Cape stumpnose Rhabdosargus holubi (Steindachner, 1881) (Sparidae)
- Authors: Kisten, Yanasivan
- Date: 2018
- Subjects: Freshwater fishes -- South Africa , Fishes -- Ecology Freshwater fishes -- Ecology Estuarine ecology -- South Africa Estuaries -- South Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/31424 , vital:31374
- Description: Estuaries are important nursery areas for early stages of marine estuarine-dependent fishes, such as the sparid Rhabdosargus holubi. Estuaries provide food, shelter from predators and optimal habitats and environmental conditions for growth and development. However, estuaries are environmentally dynamic and resident organisms must be able to adapt to rapid changes. Such changes are potentially further exacerbated anthropogenically by water and land use practices such as freshwater abstraction, impoundment, pollution and anthropogenically driven climatic change. An effective approach to better understanding the current and future impacts of these kinds of changes, is by assessing the environmental adaptability of organisms, especially to extreme conditions such as droughts and resulting water shortages, which are prevalent in some parts of southern Africa. This thesis examines the effect of various environmental changes such as salinity, turbidity and temperature on the ecology and physiology of a South African common endemic fish species, the Cape stumpnose, R. holubi. Previous work on the species have investigated short term impacts on physiology while this study investigates medium to short term impacts. The specie’s wide distribution in South Africa and tolerance enabled a range of environmental, ecological and physiological relationships to be tested in the context of a changing world. These included: 1) determining the relationship between environmental variability and the distribution and abundance of R. holubi larvae in 25 estuaries along the temperate coast of South Africa; 2) determining the relationship between environmental variability and the movement of larvae and juveniles within two permanently open estuaries; 3) determining the impact of shock and acclimatization on R. holubi salinity tolerance ranges under hypersaline conditions; 4) II determining the impact of hypersalinity on the potential long term impacts growth and skeletal deformities of juvenile R. holubi in aquaria. The findings of these studies suggest that larval occurrence and density within estuaries is a function of salinity and turbidity, by proxy indicating a preference for high freshwater inflow especially in estuary types such as permanently open estuaries. The movement of larvae and juveniles within these estuaries is also mediated by salinity, turbidity and temperature, indicating the importance of seasonality along with environmental conditions and potential olfactory recruitment cues driven by freshwater flow. Tolerance experiments showed that slower acclimation to higher salinities can expand the previously reported tolerance range indicating the potential for adaptation. Physiological experiments showed negative impacts on respiration at salinities exceeding 45, indicating potential long-term physiological effects in hypersaline conditions. Further, living at high salinities for extended periods may have potentially negative effects on long term physiology, particularly growth and skeletal development. The overall results indicate that low salinity (5–18), high turbidity (20–30 NTU) and high temperature (5–22°C) are integral to the distribution and abundance of the species in permanently open estuaries. This conforms to the general rule that estuarine-associated marine fish have higher growth rates in salinities of 12-19. However, juveniles are also adapted to survive at higher salinities for long periods (2 months in the current thesis). This explains why R. holubi is one of the few species in the estuarine fish community that may persist during droughts. The predicted future changes in coastal temperatures and rainfall by climate change investigators, are likely to result in range shifts and changes in recruitment times of estuarine fish communities. The current work addresses novel aspects of the ecology and physiology of R. holubi and indicates that this species will play an increasingly important role within the estuaries of South Africa.
- Full Text:
- Date Issued: 2018
- Authors: Kisten, Yanasivan
- Date: 2018
- Subjects: Freshwater fishes -- South Africa , Fishes -- Ecology Freshwater fishes -- Ecology Estuarine ecology -- South Africa Estuaries -- South Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10948/31424 , vital:31374
- Description: Estuaries are important nursery areas for early stages of marine estuarine-dependent fishes, such as the sparid Rhabdosargus holubi. Estuaries provide food, shelter from predators and optimal habitats and environmental conditions for growth and development. However, estuaries are environmentally dynamic and resident organisms must be able to adapt to rapid changes. Such changes are potentially further exacerbated anthropogenically by water and land use practices such as freshwater abstraction, impoundment, pollution and anthropogenically driven climatic change. An effective approach to better understanding the current and future impacts of these kinds of changes, is by assessing the environmental adaptability of organisms, especially to extreme conditions such as droughts and resulting water shortages, which are prevalent in some parts of southern Africa. This thesis examines the effect of various environmental changes such as salinity, turbidity and temperature on the ecology and physiology of a South African common endemic fish species, the Cape stumpnose, R. holubi. Previous work on the species have investigated short term impacts on physiology while this study investigates medium to short term impacts. The specie’s wide distribution in South Africa and tolerance enabled a range of environmental, ecological and physiological relationships to be tested in the context of a changing world. These included: 1) determining the relationship between environmental variability and the distribution and abundance of R. holubi larvae in 25 estuaries along the temperate coast of South Africa; 2) determining the relationship between environmental variability and the movement of larvae and juveniles within two permanently open estuaries; 3) determining the impact of shock and acclimatization on R. holubi salinity tolerance ranges under hypersaline conditions; 4) II determining the impact of hypersalinity on the potential long term impacts growth and skeletal deformities of juvenile R. holubi in aquaria. The findings of these studies suggest that larval occurrence and density within estuaries is a function of salinity and turbidity, by proxy indicating a preference for high freshwater inflow especially in estuary types such as permanently open estuaries. The movement of larvae and juveniles within these estuaries is also mediated by salinity, turbidity and temperature, indicating the importance of seasonality along with environmental conditions and potential olfactory recruitment cues driven by freshwater flow. Tolerance experiments showed that slower acclimation to higher salinities can expand the previously reported tolerance range indicating the potential for adaptation. Physiological experiments showed negative impacts on respiration at salinities exceeding 45, indicating potential long-term physiological effects in hypersaline conditions. Further, living at high salinities for extended periods may have potentially negative effects on long term physiology, particularly growth and skeletal development. The overall results indicate that low salinity (5–18), high turbidity (20–30 NTU) and high temperature (5–22°C) are integral to the distribution and abundance of the species in permanently open estuaries. This conforms to the general rule that estuarine-associated marine fish have higher growth rates in salinities of 12-19. However, juveniles are also adapted to survive at higher salinities for long periods (2 months in the current thesis). This explains why R. holubi is one of the few species in the estuarine fish community that may persist during droughts. The predicted future changes in coastal temperatures and rainfall by climate change investigators, are likely to result in range shifts and changes in recruitment times of estuarine fish communities. The current work addresses novel aspects of the ecology and physiology of R. holubi and indicates that this species will play an increasingly important role within the estuaries of South Africa.
- Full Text:
- Date Issued: 2018
Community structure and trophic relations in marine tufa stromatolite pools of the Eastern Cape
- Authors: Rishworth, Gavin Midgley
- Date: 2017
- Subjects: Bioturbation -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/7116 , vital:21236
- Description: Microbialites were the dominant life-form of most shallow oceans during the Precambrian. These structures are formed by the deposition of calcium carbonate by cyanobacteria as well as the binding and trapping of sediment by these and other microalgae. In modern environments they are scarce due to several factors, including grazing pressures by metazoans, altered calcium carbonate saturation states of seawater and competition with macroalgae. The recent discovery of an extensive network of actively accreting layered microbialites (stromatolites) along the South African coastline is potentially informative from this perspective. These stromatolites form within the peritidal zone, at the interface of groundwater seepage and periodic marine incursion, forming pools trapped by the accreting fabric. The aim of this thesis was to characterise the ecosystem dynamics of a representative selection of the South African locations. During a comprehensive monthly assessment over an annual cycle, as well as for additional seasonal collections, physico-chemical measurements were monitored together with biological components such as benthic and pelagic microalgae as well as the invertebrate fauna inhabiting the stromatolite pools. These components were then assessed in terms of the potential physical and biological drivers which might explain patterns of variability. Finally, to link all of the ecosystem components, a food-web analysis was conducted, to determine the trophic linkages and, importantly, the reliance by the various consumer organisms on the stromatolite material as a food resource. Results show that the stromatolite pools are driven by a regular interplay between freshwater and marine salinity states, this being determined by tidal amplitude and ocean storm cycles. Furthermore, marine incursion represents the primary source of phosphorus for the stromatolite pools, while available nitrogen is consistently provided by the freshwater inlet stream at each site. This results in an optimum zone of primary biomass within the main stromatolite pool supported by nutrient conditions, while the shifts in salinity state occurring over a weekly tidal schedule likely exclude organisms and macrophytes that are not halotolerant. This is reflected in the benthic microalgae that form the stromatolite accretions in that they are primarily driven by salinity conditions, in addition to seasonal patterns. Interestingly, the variable nutrient conditions, both between sites and temporally, did not contribute as an important driver of the benthic microalgae but did significantly relate to the pelagic microalgae (phytoplankton). This, together with the higher biomass of benthic microalgae compared to its pelagic counterpart, suggests that the stromatolite pools are a benthic-driven system. The short duration of water retention within the stromatolite pools as a result of the constant freshwater inflow, likely also precludes nutrient build-up and favours the benthic, sessile ecosystem component, especially the stromatolite-forming microalgae. In terms of the metazoan infauna, the South African stromatolite pools support a persistent assemblage. This might be surprising given the apparently destructive influence of grazing and burrowing animals on microbial mats in terms of restricting the formation of layered accretions. However, metazoans that burrow within the stromatolite fabric were observed to coexist with clear, layered accretions. This supports the observations in some other modern microbialite habitats to suggest that metazoan disruption is clearly not the only or primary factor responsible for modern microbialite scarcity. When assessing the possible drivers of the metazoan community occupying the stromatolite matrix, both salinity patterns and resource conditions in terms of nutrient supply and macroalgal cover were consistently best related to infaunal abundance and presence/absence. This further demonstrates the role of salinity conditions in terms of providing a habitat that is restrictive to most metazoan organisms, while also suggesting that the metazoans are responding to macroalgal rather than the stromatolite microalgal conditions. To further develop this observation, the results from the stable isotope work clearly reflect a dominance of pool macroalgae in the diets of invertebrate consumers, with little to no stromatolite material consumed. This suggests that there is limited apparent destructive grazing influence by the metazoans on the stromatolite matrix, in addition to the burrowing bioturbation mentioned previously. Furthermore, the metazoan grazers may be indirectly benefitting the stromatolites by restricting macroalgal biomass, which might otherwise outcompete its microalgal counterpart. This study provides a valuable understanding of benthic-driven peritidal stromatolite ecosystems, and also, from a geological perspective of past stromatolite habitats, suggests some of the mechanisms as to why metazoans may be able to coexist with layered microbialites. Given the threats to similar habitats globally, especially in terms of water resources, management measures necessary to ensure stromatolite persistence in modern environments such as these are proposed. The possible ecological role of peritidal stromatolite habitats within the broader environment, as well as recommendations for future work, is also contextualised.
- Full Text:
- Date Issued: 2017
- Authors: Rishworth, Gavin Midgley
- Date: 2017
- Subjects: Bioturbation -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/7116 , vital:21236
- Description: Microbialites were the dominant life-form of most shallow oceans during the Precambrian. These structures are formed by the deposition of calcium carbonate by cyanobacteria as well as the binding and trapping of sediment by these and other microalgae. In modern environments they are scarce due to several factors, including grazing pressures by metazoans, altered calcium carbonate saturation states of seawater and competition with macroalgae. The recent discovery of an extensive network of actively accreting layered microbialites (stromatolites) along the South African coastline is potentially informative from this perspective. These stromatolites form within the peritidal zone, at the interface of groundwater seepage and periodic marine incursion, forming pools trapped by the accreting fabric. The aim of this thesis was to characterise the ecosystem dynamics of a representative selection of the South African locations. During a comprehensive monthly assessment over an annual cycle, as well as for additional seasonal collections, physico-chemical measurements were monitored together with biological components such as benthic and pelagic microalgae as well as the invertebrate fauna inhabiting the stromatolite pools. These components were then assessed in terms of the potential physical and biological drivers which might explain patterns of variability. Finally, to link all of the ecosystem components, a food-web analysis was conducted, to determine the trophic linkages and, importantly, the reliance by the various consumer organisms on the stromatolite material as a food resource. Results show that the stromatolite pools are driven by a regular interplay between freshwater and marine salinity states, this being determined by tidal amplitude and ocean storm cycles. Furthermore, marine incursion represents the primary source of phosphorus for the stromatolite pools, while available nitrogen is consistently provided by the freshwater inlet stream at each site. This results in an optimum zone of primary biomass within the main stromatolite pool supported by nutrient conditions, while the shifts in salinity state occurring over a weekly tidal schedule likely exclude organisms and macrophytes that are not halotolerant. This is reflected in the benthic microalgae that form the stromatolite accretions in that they are primarily driven by salinity conditions, in addition to seasonal patterns. Interestingly, the variable nutrient conditions, both between sites and temporally, did not contribute as an important driver of the benthic microalgae but did significantly relate to the pelagic microalgae (phytoplankton). This, together with the higher biomass of benthic microalgae compared to its pelagic counterpart, suggests that the stromatolite pools are a benthic-driven system. The short duration of water retention within the stromatolite pools as a result of the constant freshwater inflow, likely also precludes nutrient build-up and favours the benthic, sessile ecosystem component, especially the stromatolite-forming microalgae. In terms of the metazoan infauna, the South African stromatolite pools support a persistent assemblage. This might be surprising given the apparently destructive influence of grazing and burrowing animals on microbial mats in terms of restricting the formation of layered accretions. However, metazoans that burrow within the stromatolite fabric were observed to coexist with clear, layered accretions. This supports the observations in some other modern microbialite habitats to suggest that metazoan disruption is clearly not the only or primary factor responsible for modern microbialite scarcity. When assessing the possible drivers of the metazoan community occupying the stromatolite matrix, both salinity patterns and resource conditions in terms of nutrient supply and macroalgal cover were consistently best related to infaunal abundance and presence/absence. This further demonstrates the role of salinity conditions in terms of providing a habitat that is restrictive to most metazoan organisms, while also suggesting that the metazoans are responding to macroalgal rather than the stromatolite microalgal conditions. To further develop this observation, the results from the stable isotope work clearly reflect a dominance of pool macroalgae in the diets of invertebrate consumers, with little to no stromatolite material consumed. This suggests that there is limited apparent destructive grazing influence by the metazoans on the stromatolite matrix, in addition to the burrowing bioturbation mentioned previously. Furthermore, the metazoan grazers may be indirectly benefitting the stromatolites by restricting macroalgal biomass, which might otherwise outcompete its microalgal counterpart. This study provides a valuable understanding of benthic-driven peritidal stromatolite ecosystems, and also, from a geological perspective of past stromatolite habitats, suggests some of the mechanisms as to why metazoans may be able to coexist with layered microbialites. Given the threats to similar habitats globally, especially in terms of water resources, management measures necessary to ensure stromatolite persistence in modern environments such as these are proposed. The possible ecological role of peritidal stromatolite habitats within the broader environment, as well as recommendations for future work, is also contextualised.
- Full Text:
- Date Issued: 2017
Ecology of key cerithioidean gastropods in the mangroves of the iSimangaliso Wetland Park, KwaZulu-Natal South Africa
- Authors: Raw, Jacqueline Leoni
- Date: 2017
- Subjects: Gastropoda -- South Africa -- KwaZulu-Natal Mangrove ecology -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11942 , vital:27009
- Description: Gastropods are one of the most diverse species groups in mangrove habitats, however, many of their specific roles in relation to ecological patterns and processes are currently largely unknown. The overall aim of this research project was to provide basic ecological information for key gastropod species from subtropical mangroves within a protected area. South African mangroves cover relatively small areas and are restricted to estuaries, these habitats therefore present unique opportunities and challenges to the species that occur in them. Three gastropod species, Terebralia palustris, Cerithidea decollata, and Melanoides tuberculata, all occur at their natural southernmost range limit within South Africa and were selected based on their prominence and occurrence in mangrove habitats of the iSimangaliso Wetland Park, a UNESCO World Heritage Site. Trophic linkages and resource partitioning, resource utilization rates, and ecological resilience were investigated respectively using: 1) a stable isotope (δ15N and δ13C) approach; 2) an experimental approach to quantify feeding dynamics (ingestion rate, consumption/digestion efficiency and grazing impact); and 3) a mixed-effects modelling approach to relate population responses to environmental variables. The diet of T. palustris was seasonally variable and a number of sources were incorporated by different sized snails, but their grazing impact on microphytobenthos was not significant. The results also indicated an ontogenetic shift in the dietary niche for T. palustris through robust partitioning of resources between different size classes. The diets of C. decollata and M. tuberculata were dominated by different primary resources as a function of where they occurred in the mangroves. Melanoides tuberculata consumed a wide variety of primary resources, a typical trait of an opportunistic generalist species. The ingestion rate of M. tuberculata was not dependent on the availability of microphytobenthos, and was highest when conditions were oligotrophic. The resilience of C. decollata was related to the tree-climbing behaviour of this species and its occurrence was best explained by sediment conductivity. These responses were considered in conjunction to what has previously been reported on the resilience of the mangrove trees. The results of this research project have provided new basic ecological information for all three gastropod species in this data-deficient subtropical region. This information can potentially be used in comparative studies for these species in other regions or in broader scale ecological studies. Terebralia palustris has recently experienced a range contraction along the South African coastline. This research project has shown that the diet of this species is highly variable and that food limitation and competition for resources should be considered as potential drivers of the local decline. Cerithidea decollata has in contrast expanded its distributional range in this region. This research project has shown that this species has a generalist diet and exhibits traits in relation to tolerance that are expected to have facilitated its expansion into temperate saltmarsh habitats that occur in dynamic estuaries. Melanoides tuberculata is a globally invasive species, and as South African populations are within its native range, ecological information from this region is valuable as it can be used to investigate the potential ecological effects following introduction into new habitats beyond the native range. Biological drivers have a significant impact on mangrove ecosystem functioning, particularly in relation to recycling and the retention of organic carbon generated through primary productivity. Understanding the ecological linkages that maintain ecological functioning and stability is therefore an important step towards conserving and sustainably managing threatened ecosystems such as mangrove forests.
- Full Text:
- Date Issued: 2017
- Authors: Raw, Jacqueline Leoni
- Date: 2017
- Subjects: Gastropoda -- South Africa -- KwaZulu-Natal Mangrove ecology -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/11942 , vital:27009
- Description: Gastropods are one of the most diverse species groups in mangrove habitats, however, many of their specific roles in relation to ecological patterns and processes are currently largely unknown. The overall aim of this research project was to provide basic ecological information for key gastropod species from subtropical mangroves within a protected area. South African mangroves cover relatively small areas and are restricted to estuaries, these habitats therefore present unique opportunities and challenges to the species that occur in them. Three gastropod species, Terebralia palustris, Cerithidea decollata, and Melanoides tuberculata, all occur at their natural southernmost range limit within South Africa and were selected based on their prominence and occurrence in mangrove habitats of the iSimangaliso Wetland Park, a UNESCO World Heritage Site. Trophic linkages and resource partitioning, resource utilization rates, and ecological resilience were investigated respectively using: 1) a stable isotope (δ15N and δ13C) approach; 2) an experimental approach to quantify feeding dynamics (ingestion rate, consumption/digestion efficiency and grazing impact); and 3) a mixed-effects modelling approach to relate population responses to environmental variables. The diet of T. palustris was seasonally variable and a number of sources were incorporated by different sized snails, but their grazing impact on microphytobenthos was not significant. The results also indicated an ontogenetic shift in the dietary niche for T. palustris through robust partitioning of resources between different size classes. The diets of C. decollata and M. tuberculata were dominated by different primary resources as a function of where they occurred in the mangroves. Melanoides tuberculata consumed a wide variety of primary resources, a typical trait of an opportunistic generalist species. The ingestion rate of M. tuberculata was not dependent on the availability of microphytobenthos, and was highest when conditions were oligotrophic. The resilience of C. decollata was related to the tree-climbing behaviour of this species and its occurrence was best explained by sediment conductivity. These responses were considered in conjunction to what has previously been reported on the resilience of the mangrove trees. The results of this research project have provided new basic ecological information for all three gastropod species in this data-deficient subtropical region. This information can potentially be used in comparative studies for these species in other regions or in broader scale ecological studies. Terebralia palustris has recently experienced a range contraction along the South African coastline. This research project has shown that the diet of this species is highly variable and that food limitation and competition for resources should be considered as potential drivers of the local decline. Cerithidea decollata has in contrast expanded its distributional range in this region. This research project has shown that this species has a generalist diet and exhibits traits in relation to tolerance that are expected to have facilitated its expansion into temperate saltmarsh habitats that occur in dynamic estuaries. Melanoides tuberculata is a globally invasive species, and as South African populations are within its native range, ecological information from this region is valuable as it can be used to investigate the potential ecological effects following introduction into new habitats beyond the native range. Biological drivers have a significant impact on mangrove ecosystem functioning, particularly in relation to recycling and the retention of organic carbon generated through primary productivity. Understanding the ecological linkages that maintain ecological functioning and stability is therefore an important step towards conserving and sustainably managing threatened ecosystems such as mangrove forests.
- Full Text:
- Date Issued: 2017
Freshwater invertebrate assemblages of the Eastern Cape Karoo region (South Africa) earmarked for shale gas exploration
- Authors: Mabidi, Annah
- Date: 2017
- Subjects: Invertebrates -- South Africa -- Karoo , Shale gas -- Conservation -- South Africa -- Karoo Freshwater animals -- South Africa -- Karoo Stream ecology -- South Africa -- Karoo
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/13713 , vital:27301
- Description: The Eastern Cape Karoo region is semi-arid with highly variable rainfall. This variability in rainfall sustains a mosaic of surface freshwater bodies that range from permanently to temporarily inundated. These waterbodies provide habitats for diverse invertebrate assemblages. The imminent hydraulic fracturing for shale gas has a potential to modify the water regime, with particular risk of salinisation. Accumulation of salts in freshwater wetlands results in loss of biodiversity, as invertebrate species shift from salt intolerant to salt tolerant species. This study therefore aims to expand on existing knowledge and provide new information on the distribution, diversity and structure of macroinvertebrate assemblages associated with various freshwater bodies in the region prior to shale gas exploration. Limnological and ecological aspects of thirty-three waterbodies (rivers, dams and depression wetlands) were investigated between November 2014 and March 2016. An experimental study on the effects of salinity on hatching success of branchiopod resting eggs was also included in the research. Rivers were characterised by high conductivity and depression wetlands by high turbidity, while dams had relatively higher pH than the other two waterbody types. In terms of global phosphorus interpretation guidelines, the results indicate that freshwater systems in the study region are predominantly eutrophic, indicating that agricultural run-off, particularly from livestock dung (goats, cattle and sheep), is an important source of phosphorus in the freshwater systems studied. Our results revealed new distribution records for branchiopod crustaceans in the Eastern Cape region, including the first record of Laevicaudata. Results showed that the sampled variables were unable to explain the variation in physicochemistry and invertebrate assemblage of several sites. Waterbody type, whether a depression wetland or a river, was the only factor that consistently showed an effect on the composition of both physicochemical data and invertebrate data. Depression wetlands ranged from completely bare to being extensively covered by macrophytes. Therefore, the effect of macrophyte cover in structuring macroinvertebrate assemblages was the focus of further investigation. The results indicated that the macrophyte cover gradient had little influence on the structure of the invertebrate assemblages in the depression wetlands, while only the presence/absence of vegetation significantly influenced the structure of the invertebrate assemblages in these systems. Surface area, dissolved inorganic nitrogen and pelagic chlorophyll-a were the environmental variables that best explained the variation in the macroinvertebrate assemblages among the sites. However, the differences in macroinvertebrate richness, abundance and distribution patterns among sites were only weakly influenced by local and regional environmental factors. These findings suggest that invertebrate in temporary wetland systems are adapted to the highly variable nature of temporary habitats, thus the influence of local variables is negligible. Results of the experimental study, on the effect of salinity on hatching success of branchiopod resting eggs, revealed that hatchling abundance and diversity of large branchiopods was significantly reduced at salinities of 2.5 g L−1 and above. Salt-tolerant taxa such as Copepoda and Ostracoda were the only ones to emerge in the highest salinity of 10 g L−1. Thus, should the region continue to experience increasing aridity and possible shale gas development, which all aggravate the salinisation problem, severe loss of branchiopod diversity (Anostraca, Laevicaudata, Spinicaudata and Notostraca) is likely to occur. This may lead to considerable decline in invertebrate diversity in the region, with cascading effects on food webs and ecosystem functions. The findings of this study can potentially be used in comparative studies on wetland invertebrate ecology in other semi-arid regions and in the formulation of policy and strategies for biodiversity conservation.
- Full Text:
- Date Issued: 2017
- Authors: Mabidi, Annah
- Date: 2017
- Subjects: Invertebrates -- South Africa -- Karoo , Shale gas -- Conservation -- South Africa -- Karoo Freshwater animals -- South Africa -- Karoo Stream ecology -- South Africa -- Karoo
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/13713 , vital:27301
- Description: The Eastern Cape Karoo region is semi-arid with highly variable rainfall. This variability in rainfall sustains a mosaic of surface freshwater bodies that range from permanently to temporarily inundated. These waterbodies provide habitats for diverse invertebrate assemblages. The imminent hydraulic fracturing for shale gas has a potential to modify the water regime, with particular risk of salinisation. Accumulation of salts in freshwater wetlands results in loss of biodiversity, as invertebrate species shift from salt intolerant to salt tolerant species. This study therefore aims to expand on existing knowledge and provide new information on the distribution, diversity and structure of macroinvertebrate assemblages associated with various freshwater bodies in the region prior to shale gas exploration. Limnological and ecological aspects of thirty-three waterbodies (rivers, dams and depression wetlands) were investigated between November 2014 and March 2016. An experimental study on the effects of salinity on hatching success of branchiopod resting eggs was also included in the research. Rivers were characterised by high conductivity and depression wetlands by high turbidity, while dams had relatively higher pH than the other two waterbody types. In terms of global phosphorus interpretation guidelines, the results indicate that freshwater systems in the study region are predominantly eutrophic, indicating that agricultural run-off, particularly from livestock dung (goats, cattle and sheep), is an important source of phosphorus in the freshwater systems studied. Our results revealed new distribution records for branchiopod crustaceans in the Eastern Cape region, including the first record of Laevicaudata. Results showed that the sampled variables were unable to explain the variation in physicochemistry and invertebrate assemblage of several sites. Waterbody type, whether a depression wetland or a river, was the only factor that consistently showed an effect on the composition of both physicochemical data and invertebrate data. Depression wetlands ranged from completely bare to being extensively covered by macrophytes. Therefore, the effect of macrophyte cover in structuring macroinvertebrate assemblages was the focus of further investigation. The results indicated that the macrophyte cover gradient had little influence on the structure of the invertebrate assemblages in the depression wetlands, while only the presence/absence of vegetation significantly influenced the structure of the invertebrate assemblages in these systems. Surface area, dissolved inorganic nitrogen and pelagic chlorophyll-a were the environmental variables that best explained the variation in the macroinvertebrate assemblages among the sites. However, the differences in macroinvertebrate richness, abundance and distribution patterns among sites were only weakly influenced by local and regional environmental factors. These findings suggest that invertebrate in temporary wetland systems are adapted to the highly variable nature of temporary habitats, thus the influence of local variables is negligible. Results of the experimental study, on the effect of salinity on hatching success of branchiopod resting eggs, revealed that hatchling abundance and diversity of large branchiopods was significantly reduced at salinities of 2.5 g L−1 and above. Salt-tolerant taxa such as Copepoda and Ostracoda were the only ones to emerge in the highest salinity of 10 g L−1. Thus, should the region continue to experience increasing aridity and possible shale gas development, which all aggravate the salinisation problem, severe loss of branchiopod diversity (Anostraca, Laevicaudata, Spinicaudata and Notostraca) is likely to occur. This may lead to considerable decline in invertebrate diversity in the region, with cascading effects on food webs and ecosystem functions. The findings of this study can potentially be used in comparative studies on wetland invertebrate ecology in other semi-arid regions and in the formulation of policy and strategies for biodiversity conservation.
- Full Text:
- Date Issued: 2017
Diversity and ecological role of true crabs (crustacea, brachyura) in the St Lucia Estuary, iSimangaliso Wetland Park, in response to global change
- Authors: Peer, Nasreen
- Date: 2016
- Subjects: Crustacea -- South Africa -- KwaZulu-Natal Crustacea -- South Africa -- Saint Lucia, Lake , Global environmental change
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/45558 , vital:38669
- Description: This work has explored novel concepts of crab vulnerability, recovery and resilience under unprecedented climatic changes in South Africa’s first UNESCO World Heritage Site. By showing how large salinity shifts and prolonged interruption of the marine connection can drastically affect brachyuran diversity and community structure in St. Lucia Lake, the potential cascading effects on ecosystem functioning were estimated. Only 15 crab species were recorded within the system during this study, compared to the 26 species that were known to occur prior to the recent environmental shift (i.e. 58% decline). The impact of this biodiversity collapse has negatively affected the associated mangrove ecosystem in particular, with the entire community of fiddler crabs persisting only in a small area near the estuary mouth. Gut fluorescence measurements have shown that, due to a lack of tidal Influence, their grazing impact on microphytobenthic biomass may become unsustainable. However, although adults are able to survive in this environment, the larvae require a marine connection; and they are thus unable to tolerate the wide fluctuations in salinity currently prevailing in the system. The study concludes that brachyurans are key factors to consider during conservation planning, as they are crucial to maintaining ecosystem function in the face of environmental change. This research is of global relevance, as many similar estuarine and coastal lakes around the world are currently experiencing similar state shifts. All six chapters included in the thesis have already been published in the peer-reviewed literature; and the project results have also earned Nasreen the NRF award of Next-Generation Researcher of the Year for 2015.
- Full Text:
- Date Issued: 2016
- Authors: Peer, Nasreen
- Date: 2016
- Subjects: Crustacea -- South Africa -- KwaZulu-Natal Crustacea -- South Africa -- Saint Lucia, Lake , Global environmental change
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/45558 , vital:38669
- Description: This work has explored novel concepts of crab vulnerability, recovery and resilience under unprecedented climatic changes in South Africa’s first UNESCO World Heritage Site. By showing how large salinity shifts and prolonged interruption of the marine connection can drastically affect brachyuran diversity and community structure in St. Lucia Lake, the potential cascading effects on ecosystem functioning were estimated. Only 15 crab species were recorded within the system during this study, compared to the 26 species that were known to occur prior to the recent environmental shift (i.e. 58% decline). The impact of this biodiversity collapse has negatively affected the associated mangrove ecosystem in particular, with the entire community of fiddler crabs persisting only in a small area near the estuary mouth. Gut fluorescence measurements have shown that, due to a lack of tidal Influence, their grazing impact on microphytobenthic biomass may become unsustainable. However, although adults are able to survive in this environment, the larvae require a marine connection; and they are thus unable to tolerate the wide fluctuations in salinity currently prevailing in the system. The study concludes that brachyurans are key factors to consider during conservation planning, as they are crucial to maintaining ecosystem function in the face of environmental change. This research is of global relevance, as many similar estuarine and coastal lakes around the world are currently experiencing similar state shifts. All six chapters included in the thesis have already been published in the peer-reviewed literature; and the project results have also earned Nasreen the NRF award of Next-Generation Researcher of the Year for 2015.
- Full Text:
- Date Issued: 2016
The role of microzooplankton in carbon cycling in the Southern Ocean
- Authors: Froneman, Pierre William
- Date: 1996
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:21066 , http://hdl.handle.net/10962/6234
- Description: A 3-year study was carried out on the role of microzooplankton in carbon cycling in the south Atlantic and the Atlantic sector of the Southern Ocean. Microzooplankton grazing impact on phytoplankton was estimated during austral summer and winter employing the dilution technique. Carnivory by larger zooplankton on microzooplankton during summer was estimated using in vitro incubations. Microzooplankton assemblages were always dominated by protozoans comprising ciliates and dinoflagellates. In the ( 20 um chlorophyll fraction, microzooplankton grazing was sufficient to control the growth of the nano- and picophytoplankton suggesting that, where larger microphytoplankton cells dominate, micro zooplankton maintain the background concentrations of the nano- and picophytoplankton. During winter, when small nano- and picophytoplankton cells dominate total chlorophyll concentrations, the microzooplankton grazing impact on phytoplankton is dramatically increased. Microzooplankton removed on average 37% of the initial phytoplankton stock or 70% of the daily phytoplankton production. These results suggest that in winter, micro zooplankton are the main sink for phytoplankton production. Carnivory experiments conducted with selected meso- (copepods) and macro zooplankton (euphausiids and tunicates) showed that all species examined consumed micro zooplankton in the presence of substantial chlorophyll concentrations. Microzooplankton can, therefore, be regarded as trophic intermediates between bacterioplankton, small phytoplankton cells and larger zooplankton species in the Southern Ocean. The results of this investigation suggest a spatiotemporal shift in efficiency of the biological pump mediated by changes in the size composition of the phytoplankton assemblages. South of the Antarctic Polar Front (APF) large IV microphytoplankton cells dominate the summer chlorophyll biomass, suggesting that larger zooplankton grazers represent the main sink for phytoplankton production. Under these conditions, carbon flux to the interior of the ocean will be high due to diel vertical migrations by grazers and the production of large, fast sinking faecal pellets. The sedimentation of large phytoplankton cells also contributes to flux. In the permanently open waters south of the APF and throughout the Southern Ocean during winter, small phytoplankton cells dominate total chlorophyll, resulting in the microbial loop being the main sink for phytoplankton production. The close coupling between the micro zooplankton and the microbial loop dramatically reduces the transfer of organic carbon from the surface layers to depth. Carnivory by metazoans on microzooplankton may reduce the high grazing impact of micro zooplankton and, may also represent an important source of carbon flux originating from the microbial loop.
- Full Text:
- Date Issued: 1996
- Authors: Froneman, Pierre William
- Date: 1996
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:21066 , http://hdl.handle.net/10962/6234
- Description: A 3-year study was carried out on the role of microzooplankton in carbon cycling in the south Atlantic and the Atlantic sector of the Southern Ocean. Microzooplankton grazing impact on phytoplankton was estimated during austral summer and winter employing the dilution technique. Carnivory by larger zooplankton on microzooplankton during summer was estimated using in vitro incubations. Microzooplankton assemblages were always dominated by protozoans comprising ciliates and dinoflagellates. In the ( 20 um chlorophyll fraction, microzooplankton grazing was sufficient to control the growth of the nano- and picophytoplankton suggesting that, where larger microphytoplankton cells dominate, micro zooplankton maintain the background concentrations of the nano- and picophytoplankton. During winter, when small nano- and picophytoplankton cells dominate total chlorophyll concentrations, the microzooplankton grazing impact on phytoplankton is dramatically increased. Microzooplankton removed on average 37% of the initial phytoplankton stock or 70% of the daily phytoplankton production. These results suggest that in winter, micro zooplankton are the main sink for phytoplankton production. Carnivory experiments conducted with selected meso- (copepods) and macro zooplankton (euphausiids and tunicates) showed that all species examined consumed micro zooplankton in the presence of substantial chlorophyll concentrations. Microzooplankton can, therefore, be regarded as trophic intermediates between bacterioplankton, small phytoplankton cells and larger zooplankton species in the Southern Ocean. The results of this investigation suggest a spatiotemporal shift in efficiency of the biological pump mediated by changes in the size composition of the phytoplankton assemblages. South of the Antarctic Polar Front (APF) large IV microphytoplankton cells dominate the summer chlorophyll biomass, suggesting that larger zooplankton grazers represent the main sink for phytoplankton production. Under these conditions, carbon flux to the interior of the ocean will be high due to diel vertical migrations by grazers and the production of large, fast sinking faecal pellets. The sedimentation of large phytoplankton cells also contributes to flux. In the permanently open waters south of the APF and throughout the Southern Ocean during winter, small phytoplankton cells dominate total chlorophyll, resulting in the microbial loop being the main sink for phytoplankton production. The close coupling between the micro zooplankton and the microbial loop dramatically reduces the transfer of organic carbon from the surface layers to depth. Carnivory by metazoans on microzooplankton may reduce the high grazing impact of micro zooplankton and, may also represent an important source of carbon flux originating from the microbial loop.
- Full Text:
- Date Issued: 1996
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