Adaptations in allopatric populations of Triakis megalopterus isolated by the Benguela Current: steps towards understanding evolutionary processes affecting regional biodiversity
- Authors: Soekoe, Michelle
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5389 , http://hdl.handle.net/10962/d1021264
- Description: This study was initiated to gain a better understanding of evolution and adaptation of elasmobranchs by investigating how a putative biogeographic barrier, the Benguela Current, had influenced populations of a demersal shark species, Triakis megalopterus. It was hypothesized that the Benguela Current formed a biogeographic barrier in the distribution of T. megalopterus and was responsible for the divergence between South African (SA) and Angolan (AN) populations. Since elasmobranchs are generally characterized by a slow rate of evolutionary change and conservative morphology and life history traits, it was hypothesized that there would be limited genetic, morphological and life history divergence between the populations. Both mtDNA Control Region (mtCR) and microsatellites (nDNA) were used to assess population connectivity and structure of T. megalopterus. The mtCR predominantly showed a northern (Angola, AN, and Namibia, NA) versus southern (Western Cape, WC, and Eastern Cape, EC) Benguela subsystem arrangement. This suggested that the formation of the Benguela Current had an influence on the genetic structure of T. megalopterus during the early Pleistocene. The nDNA, however, showed a distinct transoceanic, Atlantic (AN, NA, WC) versus Indian Ocean (EC) arrangement, and this was attributed to the more recent exposure of the Agulhas Bank and reduced rocky shore habitat during the glaciations of the late Pleistocene. Traditional morphological analyses on full body and tooth morphology were used to assess phenotypic plasticity and/or adaptability of T. megalopterus. A novel method of geometric morphology, with potential for non-lethal application, was developed and tested to examine interpopulation divergence in shape. Traditional morphometrics showed significant divergence between populations and this variation was congruous with the mtCR haplotypes. However, the divergence in the truss variables was not concomitant to the haplotypes and suggested that differences in shape may be attributed to phenotypic plasticity. There was limited divergence in the tooth morphology between populations. The divergence in several morphological characters associated with swimming speed and manoeuvrability may be attributed to both habitat structure and dominant prey in the different biogeographic zones. The diet of T. megalopterus consisted primarily of crustaceans, teleosts and molluscs. The significant variation in the diet between populations suggested a generalist tooth configuration and broad trophic adaptability. There was significant divergence in the interpopulation life history parameters. The AN population had the fastest growth, smallest size at maturity, and shortest longevity. Individuals in the EC population had the youngest age at maturity, while the WC population had the earliest parturition. This divergence may be attributed to the contrasting thermal regimes in the three biogeographic regions and the dissimilar exploitation rates of the three populations. The results of this thesis demonstrated that a combination of the formation of the Benguela Current and sea level change most likely contributed to vicariance of three populations of T. megalopterus. The significant interpopulation morphological and life history divergence appeared to be both phenotypic and genetic, and suggested that contrasting environmental drivers can result in relatively rapid change in elasmobranchs.
- Full Text:
- Date Issued: 2016
- Authors: Soekoe, Michelle
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5389 , http://hdl.handle.net/10962/d1021264
- Description: This study was initiated to gain a better understanding of evolution and adaptation of elasmobranchs by investigating how a putative biogeographic barrier, the Benguela Current, had influenced populations of a demersal shark species, Triakis megalopterus. It was hypothesized that the Benguela Current formed a biogeographic barrier in the distribution of T. megalopterus and was responsible for the divergence between South African (SA) and Angolan (AN) populations. Since elasmobranchs are generally characterized by a slow rate of evolutionary change and conservative morphology and life history traits, it was hypothesized that there would be limited genetic, morphological and life history divergence between the populations. Both mtDNA Control Region (mtCR) and microsatellites (nDNA) were used to assess population connectivity and structure of T. megalopterus. The mtCR predominantly showed a northern (Angola, AN, and Namibia, NA) versus southern (Western Cape, WC, and Eastern Cape, EC) Benguela subsystem arrangement. This suggested that the formation of the Benguela Current had an influence on the genetic structure of T. megalopterus during the early Pleistocene. The nDNA, however, showed a distinct transoceanic, Atlantic (AN, NA, WC) versus Indian Ocean (EC) arrangement, and this was attributed to the more recent exposure of the Agulhas Bank and reduced rocky shore habitat during the glaciations of the late Pleistocene. Traditional morphological analyses on full body and tooth morphology were used to assess phenotypic plasticity and/or adaptability of T. megalopterus. A novel method of geometric morphology, with potential for non-lethal application, was developed and tested to examine interpopulation divergence in shape. Traditional morphometrics showed significant divergence between populations and this variation was congruous with the mtCR haplotypes. However, the divergence in the truss variables was not concomitant to the haplotypes and suggested that differences in shape may be attributed to phenotypic plasticity. There was limited divergence in the tooth morphology between populations. The divergence in several morphological characters associated with swimming speed and manoeuvrability may be attributed to both habitat structure and dominant prey in the different biogeographic zones. The diet of T. megalopterus consisted primarily of crustaceans, teleosts and molluscs. The significant variation in the diet between populations suggested a generalist tooth configuration and broad trophic adaptability. There was significant divergence in the interpopulation life history parameters. The AN population had the fastest growth, smallest size at maturity, and shortest longevity. Individuals in the EC population had the youngest age at maturity, while the WC population had the earliest parturition. This divergence may be attributed to the contrasting thermal regimes in the three biogeographic regions and the dissimilar exploitation rates of the three populations. The results of this thesis demonstrated that a combination of the formation of the Benguela Current and sea level change most likely contributed to vicariance of three populations of T. megalopterus. The significant interpopulation morphological and life history divergence appeared to be both phenotypic and genetic, and suggested that contrasting environmental drivers can result in relatively rapid change in elasmobranchs.
- Full Text:
- Date Issued: 2016
The ecology of hard substrate communities around Sardinia Bay in the warm-temperate Agulhas Bioregion
- Authors: Evans, Adrian G , Nel, Ronel
- Date: 2016
- Subjects: Aquatic biodiversity -- South Africa -- Nelson Mandela Bay Municipality , Marine ecology -- South Africa -- Nelson Mandela Bay Municipality , Seashore biology -- South Africa -- Nelson Mandela Bay Municipality
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/6782 , vital:21141
- Description: Hard substrates in the marine environment are an important ecosystem of great scientific and economic value. Hard substrates provide suitable habitat for a diverse assemblage of benthic organisms. This thesis investigated the ecology of benthic hard substrate communities along a section of wave-exposed coastline, including the Sardinia Bay Marine Protected Area (MPA), in the warm-temperate Agulhas bioregion of South Africa. The effect of physical variables on benthic communities, including both the intertidal and shallow subtidal, was quantitatively assessed across (Chapter 3) and along (Chapter 4) the shore to provide a model of zonation for this bioregion and a baseline of community patters and biodiversity, as this information was lacking especially for the Sardinia Bay MPA. The zones described in Chapter 3 were in agreement with previous trends described for this bioregion with the addition of different biotopes in the upper Balanoid and deeper subtidal zones as well as the addition of an intermediate/transition zone in the subtidal between the algal dominated shallow subtidal and deeper subtidal, which has an increased abundance of sessile invertebrates. Disturbance is an important process in structuring benthic communities, and its role in structuring shallow benthic communities was investigated using a disturbance simulation experiment across a wave-exposure gradient (Chapter 5). Communities were found to change along the exposure gradient and monitoring the undisturbed communities showed that large waves caused disturbances across all the exposures. The recovery process was similar across all exposures mainly through lateral vegetative growth and regrowth from basal parts with communities in disturbed quadrats recovering to resemble the surrounding undisturbed community. Recruitment did not have a significant effect in the recovery process and community composition was therefore a result of the effects of the physical environment along the exposure gradient. Lastly this thesis investigated the indirect effects of protection in the small Sardinia Bay MPA (Chapter 6). Despite the small size of the MPA this study found differences in diversity and abundance between communities inside and outside the MPA. These differences in benthic biota infer indirect effects of protection that are probably due to the increase in abundance of exploited fish inside the MPA. Lower abundances of red algae, macroinvertebrates and diversity inside the MPA in the shallow depth category was attributed to the higher abundance of the generalist fish species that concentrate in the shallows. Significantly lower abundances of Chordata in the shallow and medium depth categories inside the MPA was attributed to predation by the benthic carnivorous species as ascidians are included in the diet of these species. This chapter also compared the effectiveness of destructive (scraped quadrats) and non-destructive (visually assessed quadrats) sampling methods. Scraped quadrats were found to be more effective in detecting changes across the MPA compared to visually assessed quadrats. Destructive methods sample the entire assemblage, to a higher taxonomic level, and measure abundance using biomass. It was concluded that biomass is a better metric when comparing communities across protection or other treatments as it provides better biological information of the community.
- Full Text:
- Date Issued: 2016
- Authors: Evans, Adrian G , Nel, Ronel
- Date: 2016
- Subjects: Aquatic biodiversity -- South Africa -- Nelson Mandela Bay Municipality , Marine ecology -- South Africa -- Nelson Mandela Bay Municipality , Seashore biology -- South Africa -- Nelson Mandela Bay Municipality
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/6782 , vital:21141
- Description: Hard substrates in the marine environment are an important ecosystem of great scientific and economic value. Hard substrates provide suitable habitat for a diverse assemblage of benthic organisms. This thesis investigated the ecology of benthic hard substrate communities along a section of wave-exposed coastline, including the Sardinia Bay Marine Protected Area (MPA), in the warm-temperate Agulhas bioregion of South Africa. The effect of physical variables on benthic communities, including both the intertidal and shallow subtidal, was quantitatively assessed across (Chapter 3) and along (Chapter 4) the shore to provide a model of zonation for this bioregion and a baseline of community patters and biodiversity, as this information was lacking especially for the Sardinia Bay MPA. The zones described in Chapter 3 were in agreement with previous trends described for this bioregion with the addition of different biotopes in the upper Balanoid and deeper subtidal zones as well as the addition of an intermediate/transition zone in the subtidal between the algal dominated shallow subtidal and deeper subtidal, which has an increased abundance of sessile invertebrates. Disturbance is an important process in structuring benthic communities, and its role in structuring shallow benthic communities was investigated using a disturbance simulation experiment across a wave-exposure gradient (Chapter 5). Communities were found to change along the exposure gradient and monitoring the undisturbed communities showed that large waves caused disturbances across all the exposures. The recovery process was similar across all exposures mainly through lateral vegetative growth and regrowth from basal parts with communities in disturbed quadrats recovering to resemble the surrounding undisturbed community. Recruitment did not have a significant effect in the recovery process and community composition was therefore a result of the effects of the physical environment along the exposure gradient. Lastly this thesis investigated the indirect effects of protection in the small Sardinia Bay MPA (Chapter 6). Despite the small size of the MPA this study found differences in diversity and abundance between communities inside and outside the MPA. These differences in benthic biota infer indirect effects of protection that are probably due to the increase in abundance of exploited fish inside the MPA. Lower abundances of red algae, macroinvertebrates and diversity inside the MPA in the shallow depth category was attributed to the higher abundance of the generalist fish species that concentrate in the shallows. Significantly lower abundances of Chordata in the shallow and medium depth categories inside the MPA was attributed to predation by the benthic carnivorous species as ascidians are included in the diet of these species. This chapter also compared the effectiveness of destructive (scraped quadrats) and non-destructive (visually assessed quadrats) sampling methods. Scraped quadrats were found to be more effective in detecting changes across the MPA compared to visually assessed quadrats. Destructive methods sample the entire assemblage, to a higher taxonomic level, and measure abundance using biomass. It was concluded that biomass is a better metric when comparing communities across protection or other treatments as it provides better biological information of the community.
- Full Text:
- Date Issued: 2016
Feeding ecology, residency patterns and migration dynamics of bull sharks (Carcharhinus leucas) in the southwest Indian Ocean
- Authors: Daly, Ryan
- Date: 2015
- Subjects: Bull shark -- Ecology , Bull shark -- Feeding and feeds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5924 , http://hdl.handle.net/10962/d1017802
- Description: Bull sharks (Carcharhinus leucas) are globally distributed top predators that play an important ecological role within coastal marine communities. However, little is known about how the spatial and temporal scales of their habitat use are associated with their ecological role. In this study, a population of sub-adult and adult bull sharks were investigated within a remote subtropical marine community in the southwest Indian Ocean off the coast of southern Mozambique. The main objectives of the study were to test a minimally invasive remote biopsy sampling method; to investigate the feeding ecology of bull sharks; and to investigate the temporal and spatial scales of bull shark residency patterns and migration dynamics. Biopsy tests on free-swimming bull sharks showed that the devised sampling technique provided a minimally invasive and consistent method (biopsy retention rate = 87%) to obtain muscle tissue samples sufficiently large enough (310±78mg, mean ± SD) for stable isotope analysis. Results from the stable isotope analysis showed that adult bull sharks appeared to exhibit a shift towards consistentlyhigher trophic level prey from an expanded foraging range compared to sub-adults, possibly due to increased mobility linked with size. Additionally, bull sharks had significantly broader niche widths compared to top predatory teleost assemblages with a wide and enriched range of δ13C values relative to the local marine community, suggesting that they forage over broad spatial scales along the east coast of southern Africa. Results from the passive acoustic telemetry investigation, conducted over a period between 10 and 22 months, supported these findings showing that the majority of tagged adult sharksexhibited temporally and spatially variable residency patterns interspersed with migration events. Ten individuals undertook coastal migrations that ranged between 433 and 709km (mean = 533km) with eight of these sharks returning to the study site. During migration, individuals exhibited rates of movement between 2 and 59km.d-1 (mean = 17.58km.d-1) and were recorded travelling annual distances of between 450 and 3760km (mean = 1163km). These findings suggest that adult bull sharks are not the sedentary species once thought to be but rather, consistently move over broad spatial scales on the east coast of southern Africa and play an important predatory role shaping and linking ecological processes within the southwest Indian Ocean.
- Full Text:
- Date Issued: 2015
- Authors: Daly, Ryan
- Date: 2015
- Subjects: Bull shark -- Ecology , Bull shark -- Feeding and feeds
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5924 , http://hdl.handle.net/10962/d1017802
- Description: Bull sharks (Carcharhinus leucas) are globally distributed top predators that play an important ecological role within coastal marine communities. However, little is known about how the spatial and temporal scales of their habitat use are associated with their ecological role. In this study, a population of sub-adult and adult bull sharks were investigated within a remote subtropical marine community in the southwest Indian Ocean off the coast of southern Mozambique. The main objectives of the study were to test a minimally invasive remote biopsy sampling method; to investigate the feeding ecology of bull sharks; and to investigate the temporal and spatial scales of bull shark residency patterns and migration dynamics. Biopsy tests on free-swimming bull sharks showed that the devised sampling technique provided a minimally invasive and consistent method (biopsy retention rate = 87%) to obtain muscle tissue samples sufficiently large enough (310±78mg, mean ± SD) for stable isotope analysis. Results from the stable isotope analysis showed that adult bull sharks appeared to exhibit a shift towards consistentlyhigher trophic level prey from an expanded foraging range compared to sub-adults, possibly due to increased mobility linked with size. Additionally, bull sharks had significantly broader niche widths compared to top predatory teleost assemblages with a wide and enriched range of δ13C values relative to the local marine community, suggesting that they forage over broad spatial scales along the east coast of southern Africa. Results from the passive acoustic telemetry investigation, conducted over a period between 10 and 22 months, supported these findings showing that the majority of tagged adult sharksexhibited temporally and spatially variable residency patterns interspersed with migration events. Ten individuals undertook coastal migrations that ranged between 433 and 709km (mean = 533km) with eight of these sharks returning to the study site. During migration, individuals exhibited rates of movement between 2 and 59km.d-1 (mean = 17.58km.d-1) and were recorded travelling annual distances of between 450 and 3760km (mean = 1163km). These findings suggest that adult bull sharks are not the sedentary species once thought to be but rather, consistently move over broad spatial scales on the east coast of southern Africa and play an important predatory role shaping and linking ecological processes within the southwest Indian Ocean.
- Full Text:
- Date Issued: 2015
The diversity and distribution patterns of intertidal fish in the Agulhas bioregion
- Authors: Roux, Maryanne
- Date: 2013
- Subjects: Intertidal fishes , Marine fishes -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10723 , http://hdl.handle.net/10948/d1019712
- Description: This study aimed to expand the existing knowledge on the diversity and distribution patterns of intertidal fishes in the Sardinia Bay MPA and adjacent open access areas. It focussed particularly on in intertidal fish communities along the Agulhas Bioregion coast which has been understudied, especially in recent years. Typical resident species belonging to the family Clinidae were the most abundant, conforming to previous studies. Species from the family Gobiidae were the second most abundant in this study but this family was not previously recorded as being abundant. Transient species were unimportant in the current study which is in contrast to previous studies in the region and suggests a change in species composition. Certain transient species utilised intertidal rockpools as part of their nursery areas in the Eastern Cape, as has previously been found around Algoa Bay. A decrease in species richness from east to west was recorded in this study which has been noted by previous authors and the diversity and distribution patterns of the intertidal fish in the current study conformed to patterns found previously. The position of the biogeographic boundary between the Agulhas and Natal Bioregions could not be confirmed but Wavecrest (along the Transkei coastline) appeared to be part of a transition zone rather than a fixed break. More sampling around this area is recommended to determine the location and understand the dynamic nature of this boundary. The fish species were found to be vertically distributed across the shore with most of the resident species being more abundant across the low shore while the transient species were more abundant in the middle to low shore pools. This vertical distribution has been found at many sites around the world. The volume of the pools proved to be the primary controlling factor while the effect of temperature on vertical distribution could not be demonstrated. The benefits of the Sardinia Bay Marine Protected Area on this unexploited community of fishes could not be demonstrated but the long term benefit of protection has yet to be shown. Results from this study suggest that despite the correspondence with general biogeographic trends, the intertidal fish community has changed in composition (at least in terms of transient species) during the last 30 years and the cause for these changes may in part be reduced recruitment from exploited linefish.
- Full Text:
- Date Issued: 2013
- Authors: Roux, Maryanne
- Date: 2013
- Subjects: Intertidal fishes , Marine fishes -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10723 , http://hdl.handle.net/10948/d1019712
- Description: This study aimed to expand the existing knowledge on the diversity and distribution patterns of intertidal fishes in the Sardinia Bay MPA and adjacent open access areas. It focussed particularly on in intertidal fish communities along the Agulhas Bioregion coast which has been understudied, especially in recent years. Typical resident species belonging to the family Clinidae were the most abundant, conforming to previous studies. Species from the family Gobiidae were the second most abundant in this study but this family was not previously recorded as being abundant. Transient species were unimportant in the current study which is in contrast to previous studies in the region and suggests a change in species composition. Certain transient species utilised intertidal rockpools as part of their nursery areas in the Eastern Cape, as has previously been found around Algoa Bay. A decrease in species richness from east to west was recorded in this study which has been noted by previous authors and the diversity and distribution patterns of the intertidal fish in the current study conformed to patterns found previously. The position of the biogeographic boundary between the Agulhas and Natal Bioregions could not be confirmed but Wavecrest (along the Transkei coastline) appeared to be part of a transition zone rather than a fixed break. More sampling around this area is recommended to determine the location and understand the dynamic nature of this boundary. The fish species were found to be vertically distributed across the shore with most of the resident species being more abundant across the low shore while the transient species were more abundant in the middle to low shore pools. This vertical distribution has been found at many sites around the world. The volume of the pools proved to be the primary controlling factor while the effect of temperature on vertical distribution could not be demonstrated. The benefits of the Sardinia Bay Marine Protected Area on this unexploited community of fishes could not be demonstrated but the long term benefit of protection has yet to be shown. Results from this study suggest that despite the correspondence with general biogeographic trends, the intertidal fish community has changed in composition (at least in terms of transient species) during the last 30 years and the cause for these changes may in part be reduced recruitment from exploited linefish.
- Full Text:
- Date Issued: 2013
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