Spatial pattern analysis of thicket expansion in a semi-arid savanna
- Authors: Putzier, Rachel Rayne
- Date: 2024-10-11
- Subjects: Arid regions South Africa Eastern Cape , Spatial analysis (Statistics) , Thicket , Lidar , Cluster analysis , Trees Mortality , Scrub encroachment
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/464484 , vital:76515
- Description: Woody thickening has negative economic and ecological impacts in savannas globally. While the increase of savanna trees as a form of bush encroachment has been well studied, less is known about the increase of thicket species in savannas, which is an important phenomenon resulting in the formation of closed-canopy clumps which may exclude the grass layer over time. The early stage of thicket expansion is often initiated by a nucleating savanna species which facilitates the establishment of woody thicket pioneer species, and as the thicket clump formation expands, bush clumps increase in dominance, thereby increasing the frequency of competitive interactions and leading to a possible switch from facilitative to competitive interactions. Spatial point pattern analysis provides a useful tool to elucidate these underlying patterns and ecological processes. I used high resolution LiDAR data combined with spatial point pattern analysis to understand tree-tree interactions in a semi-arid savanna in the Eastern Cape Province of South Africa. I conducted a cluster analysis based on vegetation structural variables to distinguish different stages of woody plant encroachment from open savanna to closed canopy thicket. Using the canopy height model, I quantified the change in the grass height from open savanna to closed canopy thicket clumps as an indicator of a possible biome shift. Additionally, I used spatial point pattern analyses to investigate the effect of thicket clump formation on the composition of savanna and thicket species, the overall patterns of trees, and the associations of small thicket species with large Vachellia karroo trees, which serve as clump initiators. Finally, I examined the mortality of savanna trees across increasing stages of thicket expansion using second order spatial statistics, namely the Mark- and Pair-Correlation Functions. Results confirmed that three vegetation states, influenced by elevation, are present at the study site, representing open canopy savanna (early-stage thicket encroachment), encroached savanna with low thicket dominance (intermediate-stage thicket encroachment), and highly encroached with dominant thicket clumps (late-stage thicket encroachment). These stages showed increasing tree height, canopy cover and canopy height density, as well as decreased (but not completely absent grass layer) as thicket encroachment progresses. Spatial point pattern analysis showed, as predicted, that there was an overall aggregation of trees at small-scales within early thicket clump formation, from which I inferred that facilitative relationships may exist between trees. Contrary to my predictions, at later stages of thicket clump formation I found dominant independent patterns between savanna adults and juvenile thicket species, which may result from a combination of facilitative and competitive effects. Lastly, as expected, I found that the density of V. karroo mortality increased as thicket encroachment increased, with an overall random spatial pattern of dead V. karroo across encroachment stages. As predicted, tree mortality was randomly distributed in space in the open savanna state, and as thicket clump formation increases, tree competitive mortality became more evident, as well as decreased tree performance. Overall, the study highlights the interplay between facilitation and competition in semiarid savanna where thicket clumps are expanding. Intervention strategies are suggested to target areas of intermediate thicket clump formation, as these areas provide an opportunity to remove V. karroo before the nucleation process has enabled the establishment and increase of thicket species and to ensure the grass layer is kept productive. I conclude that the use of remote sensing and LiDAR technology holds a wide range of possibilities for monitoring and managing woody encroachment in savanna systems, however these methods need to be further refined for effective use within African savanna and thicket context, which displays high spatial aggregation making typical segmentation methods difficult. , Thesis (MSc) -- Faculty of Science, Botany, 2024
- Full Text:
- Authors: Putzier, Rachel Rayne
- Date: 2024-10-11
- Subjects: Arid regions South Africa Eastern Cape , Spatial analysis (Statistics) , Thicket , Lidar , Cluster analysis , Trees Mortality , Scrub encroachment
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/464484 , vital:76515
- Description: Woody thickening has negative economic and ecological impacts in savannas globally. While the increase of savanna trees as a form of bush encroachment has been well studied, less is known about the increase of thicket species in savannas, which is an important phenomenon resulting in the formation of closed-canopy clumps which may exclude the grass layer over time. The early stage of thicket expansion is often initiated by a nucleating savanna species which facilitates the establishment of woody thicket pioneer species, and as the thicket clump formation expands, bush clumps increase in dominance, thereby increasing the frequency of competitive interactions and leading to a possible switch from facilitative to competitive interactions. Spatial point pattern analysis provides a useful tool to elucidate these underlying patterns and ecological processes. I used high resolution LiDAR data combined with spatial point pattern analysis to understand tree-tree interactions in a semi-arid savanna in the Eastern Cape Province of South Africa. I conducted a cluster analysis based on vegetation structural variables to distinguish different stages of woody plant encroachment from open savanna to closed canopy thicket. Using the canopy height model, I quantified the change in the grass height from open savanna to closed canopy thicket clumps as an indicator of a possible biome shift. Additionally, I used spatial point pattern analyses to investigate the effect of thicket clump formation on the composition of savanna and thicket species, the overall patterns of trees, and the associations of small thicket species with large Vachellia karroo trees, which serve as clump initiators. Finally, I examined the mortality of savanna trees across increasing stages of thicket expansion using second order spatial statistics, namely the Mark- and Pair-Correlation Functions. Results confirmed that three vegetation states, influenced by elevation, are present at the study site, representing open canopy savanna (early-stage thicket encroachment), encroached savanna with low thicket dominance (intermediate-stage thicket encroachment), and highly encroached with dominant thicket clumps (late-stage thicket encroachment). These stages showed increasing tree height, canopy cover and canopy height density, as well as decreased (but not completely absent grass layer) as thicket encroachment progresses. Spatial point pattern analysis showed, as predicted, that there was an overall aggregation of trees at small-scales within early thicket clump formation, from which I inferred that facilitative relationships may exist between trees. Contrary to my predictions, at later stages of thicket clump formation I found dominant independent patterns between savanna adults and juvenile thicket species, which may result from a combination of facilitative and competitive effects. Lastly, as expected, I found that the density of V. karroo mortality increased as thicket encroachment increased, with an overall random spatial pattern of dead V. karroo across encroachment stages. As predicted, tree mortality was randomly distributed in space in the open savanna state, and as thicket clump formation increases, tree competitive mortality became more evident, as well as decreased tree performance. Overall, the study highlights the interplay between facilitation and competition in semiarid savanna where thicket clumps are expanding. Intervention strategies are suggested to target areas of intermediate thicket clump formation, as these areas provide an opportunity to remove V. karroo before the nucleation process has enabled the establishment and increase of thicket species and to ensure the grass layer is kept productive. I conclude that the use of remote sensing and LiDAR technology holds a wide range of possibilities for monitoring and managing woody encroachment in savanna systems, however these methods need to be further refined for effective use within African savanna and thicket context, which displays high spatial aggregation making typical segmentation methods difficult. , Thesis (MSc) -- Faculty of Science, Botany, 2024
- Full Text:
The effects of short-duration overnight kraaling on herbaceous vegetation and soils in mesic grassland
- Authors: Mgwali, Nompendulo
- Date: 2023-10-13
- Subjects: Grazing South Africa , Communal rangelands South Africa , Corrals South Africa , Soil nutrient , Ground cover plants
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/424721 , vital:72178
- Description: Land degradation is widespread in communal rangelands in the grassland biome of South Africa, and often attributed to overstocking and lack of coordinated management. Excessive pressure on the herbaceous component has contributed to the uncontrolled spread of opportunistic invasive alien woody species e.g. Acacia mearnsii in many degraded areas, resulting in significant loss of ecosystem service capacity, along with soil and land productivity. Short-duration overnight kraaling has been suggested as a tool for restoring degraded rangelands. Recent studies in semi-arid savannas and shrublands have reported increased grass cover, soil nutrients and palatability and concluded that short-duration kraaling is a low-cost and effective way of restoring degraded rangelands using livestock. However, the response of different plant functional types and communities to such intense livestock impact may vary depending on local context. This study used twelve paired kraal and control sites to investigate the effects of short-duration (7-24 days) overnight kraaling of livestock on herbaceous vegetation and soils in a mesic grassland. The study area is generally considered to be overgrazed but has considerable variation in grass composition and basal cover. Sites included relatively intact natural grassland and sites where wattle infestations had been cleared and where mostly bare ground remained. I tested the hypotheses that overnight kraaling would result in (1) increased basal cover due to introduction of grass seed and stimulation of germination through hoof action, (2) increased infiltration due to hoof action, and (3) increased soil nutrients and organic matter due to dung and urine deposition. I also hypothesized that factors such as a site’s initial grass cover, its slope, the occurrence and amount of rainfall before and during kraaling, and the kraaling intensity (number of livestock and duration of the kraaling event) would influence the magnitude and direction of the kraaling effect. The effect of kraaling on vegetation was strongly dependent on initial condition. Kraaling increased basal cover of grasses when sites had low initial basal cover, but decreased basal cover if initial values were over 50%. Infiltration increased if kraaling took place during or after rain but decreased if kraaling took place when soils were dry. Kraaling increased soil P and K. In mesic grasslands, short-duration overnight kraaling is promising as a tool for rehabilitating degraded sites but should be avoided where the grass sward is relatively intact. I recommend that the suitability of kraaling be further evaluated per vegetation type and local context. , Thesis (MSc) -- Faculty of Science, Botany, 2023
- Full Text:
- Authors: Mgwali, Nompendulo
- Date: 2023-10-13
- Subjects: Grazing South Africa , Communal rangelands South Africa , Corrals South Africa , Soil nutrient , Ground cover plants
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/424721 , vital:72178
- Description: Land degradation is widespread in communal rangelands in the grassland biome of South Africa, and often attributed to overstocking and lack of coordinated management. Excessive pressure on the herbaceous component has contributed to the uncontrolled spread of opportunistic invasive alien woody species e.g. Acacia mearnsii in many degraded areas, resulting in significant loss of ecosystem service capacity, along with soil and land productivity. Short-duration overnight kraaling has been suggested as a tool for restoring degraded rangelands. Recent studies in semi-arid savannas and shrublands have reported increased grass cover, soil nutrients and palatability and concluded that short-duration kraaling is a low-cost and effective way of restoring degraded rangelands using livestock. However, the response of different plant functional types and communities to such intense livestock impact may vary depending on local context. This study used twelve paired kraal and control sites to investigate the effects of short-duration (7-24 days) overnight kraaling of livestock on herbaceous vegetation and soils in a mesic grassland. The study area is generally considered to be overgrazed but has considerable variation in grass composition and basal cover. Sites included relatively intact natural grassland and sites where wattle infestations had been cleared and where mostly bare ground remained. I tested the hypotheses that overnight kraaling would result in (1) increased basal cover due to introduction of grass seed and stimulation of germination through hoof action, (2) increased infiltration due to hoof action, and (3) increased soil nutrients and organic matter due to dung and urine deposition. I also hypothesized that factors such as a site’s initial grass cover, its slope, the occurrence and amount of rainfall before and during kraaling, and the kraaling intensity (number of livestock and duration of the kraaling event) would influence the magnitude and direction of the kraaling effect. The effect of kraaling on vegetation was strongly dependent on initial condition. Kraaling increased basal cover of grasses when sites had low initial basal cover, but decreased basal cover if initial values were over 50%. Infiltration increased if kraaling took place during or after rain but decreased if kraaling took place when soils were dry. Kraaling increased soil P and K. In mesic grasslands, short-duration overnight kraaling is promising as a tool for rehabilitating degraded sites but should be avoided where the grass sward is relatively intact. I recommend that the suitability of kraaling be further evaluated per vegetation type and local context. , Thesis (MSc) -- Faculty of Science, Botany, 2023
- Full Text:
The process of thicket encroachment in semi-arid savanna: community patterns and biotic interactions
- Authors: Nell, Rhys
- Date: 2022-10-14
- Subjects: Scrub encroachment , Savanna ecology , Biotic interaction , Plant nutrients , Plant-water relationships
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/364966 , vital:65666
- Description: Bush encroachment in savannas is widespread in South Africa and is concerning, from both socio-economic and conservation viewpoints, as it affects ecosystem services, functioning and productivity. This phenomenon depends on multiple factors such as history, vegetation, management and environmental conditions, and their interplay. Encroachment into savannas has been relatively well-documented, however understanding of the different roles of tree-tree interactions between species that occur during this process is still limited. This includes the interactions causing spatial patterning, or how interactions and outcomes change over time in terms of encroachment succession from open savanna to closed-canopy thicket. The main objectives of this research are to document thicket establishment in a savanna ecosystem and consider the ecological roles of the key woody species and the abiotic properties of their micro-sites. Determining interactive effects of species co-occurrence is critical to understanding or predicting patterns and changes in biodiversity, nutrient distribution and available water resources. It is also imperative in determining correct and effective land management practices, particularly for reducing bush encroachment and its negative effect on rangelands. All data were collected on Endwell farm, located in the Smaldeel region of the Eastern Cape, South Africa. Endwell farm is a semi-arid savanna with a mean annual rainfall of 730 mm. First, I examine and describe the thicket encroachment process by exploring the associations between species and their size classes in the field. This was done by using plot-based belt transects and looking at changes in species size-class compositions from early to late successional stages. Association rules (market basket) analysis was used to identify the most common species size-class association patterns. The association between the savanna tree Vachellia karroo and the thicket pioneer Scutia myrtina was the most prevalent at all stages, with V. karroo being central to all associations in the first stage of encroachment; during later stages of encroachment, associations shift to incorporating other thicket pioneer species. The demography and clump formation of S. myrtina was strongly linked to associations with V. karroo to initiate bush clump formation. Results suggest that mature V. karroo facilitate the establishment and growth of S. myrtina. These two species were the focus of more detailed investigations to explore the nature and magnitude of their interspecific interactions. I then examined the effects of pairwise tree interactions between V. karroo and S. myrtina on soil and leaf nutrient content. I measureddifferences betweeninter-canopy and sub-canopy soil nutrient content, and the effect of associations on plant leaf nutrients, between pair-size combinations and individual controls. Results confirmed that pair-size tree interactions affected both soil nutrient and leaf nutrient content. All individuals increased soil K, N and organic C in the sub-canopy, while association with V. karrooincreased S. myrtinafoliar N, Pand K. In contrast, association with S. myrtinaloweredV. karroofoliar N, P and K. Small S. myrtina individuals werefound to benefit most from establishing and growing next to a large V. karroo individual, through mechanisms affecting soil and foliar nutrients. Scutia myrtina individuals establishing in association with smaller size classes of V. karroo showed no significant effects. I tested for positive and negative effects of pairwise tree interactions between Vachellia karroo and Scutia myrtina on available soil water and plant water potential (Ψ). This was done by looking at differences betweeninter-canopy and sub-canopy soil moisture and bulk density and associations on plant water stress (pre-dawn and mid-day leaf Ψ), between pair-size combinations and individual controls. I also selectively removed large V. karroo individuals from pairs to confirm the effects of competition andfacilitation. Similar to other studies, results confirmed positive and negative effects of pairwise tree interactions. Small S. myrtina individuals weremost facilitated by establishing and growing up next to a large V. karroo individual, through mechanisms affecting soil water content, bulk density and leaf Ψ. Scutia myrtina establishing in association with other size classes of V. karroo were much less facilitated, showing no significant effects. In contrast, large S. myrtina showed competitive interactions with V. karroo. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
The process of thicket encroachment in semi-arid savanna: community patterns and biotic interactions
- Authors: Nell, Rhys
- Date: 2022-10-14
- Subjects: Scrub encroachment , Savanna ecology , Biotic interaction , Plant nutrients , Plant-water relationships
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/364966 , vital:65666
- Description: Bush encroachment in savannas is widespread in South Africa and is concerning, from both socio-economic and conservation viewpoints, as it affects ecosystem services, functioning and productivity. This phenomenon depends on multiple factors such as history, vegetation, management and environmental conditions, and their interplay. Encroachment into savannas has been relatively well-documented, however understanding of the different roles of tree-tree interactions between species that occur during this process is still limited. This includes the interactions causing spatial patterning, or how interactions and outcomes change over time in terms of encroachment succession from open savanna to closed-canopy thicket. The main objectives of this research are to document thicket establishment in a savanna ecosystem and consider the ecological roles of the key woody species and the abiotic properties of their micro-sites. Determining interactive effects of species co-occurrence is critical to understanding or predicting patterns and changes in biodiversity, nutrient distribution and available water resources. It is also imperative in determining correct and effective land management practices, particularly for reducing bush encroachment and its negative effect on rangelands. All data were collected on Endwell farm, located in the Smaldeel region of the Eastern Cape, South Africa. Endwell farm is a semi-arid savanna with a mean annual rainfall of 730 mm. First, I examine and describe the thicket encroachment process by exploring the associations between species and their size classes in the field. This was done by using plot-based belt transects and looking at changes in species size-class compositions from early to late successional stages. Association rules (market basket) analysis was used to identify the most common species size-class association patterns. The association between the savanna tree Vachellia karroo and the thicket pioneer Scutia myrtina was the most prevalent at all stages, with V. karroo being central to all associations in the first stage of encroachment; during later stages of encroachment, associations shift to incorporating other thicket pioneer species. The demography and clump formation of S. myrtina was strongly linked to associations with V. karroo to initiate bush clump formation. Results suggest that mature V. karroo facilitate the establishment and growth of S. myrtina. These two species were the focus of more detailed investigations to explore the nature and magnitude of their interspecific interactions. I then examined the effects of pairwise tree interactions between V. karroo and S. myrtina on soil and leaf nutrient content. I measureddifferences betweeninter-canopy and sub-canopy soil nutrient content, and the effect of associations on plant leaf nutrients, between pair-size combinations and individual controls. Results confirmed that pair-size tree interactions affected both soil nutrient and leaf nutrient content. All individuals increased soil K, N and organic C in the sub-canopy, while association with V. karrooincreased S. myrtinafoliar N, Pand K. In contrast, association with S. myrtinaloweredV. karroofoliar N, P and K. Small S. myrtina individuals werefound to benefit most from establishing and growing next to a large V. karroo individual, through mechanisms affecting soil and foliar nutrients. Scutia myrtina individuals establishing in association with smaller size classes of V. karroo showed no significant effects. I tested for positive and negative effects of pairwise tree interactions between Vachellia karroo and Scutia myrtina on available soil water and plant water potential (Ψ). This was done by looking at differences betweeninter-canopy and sub-canopy soil moisture and bulk density and associations on plant water stress (pre-dawn and mid-day leaf Ψ), between pair-size combinations and individual controls. I also selectively removed large V. karroo individuals from pairs to confirm the effects of competition andfacilitation. Similar to other studies, results confirmed positive and negative effects of pairwise tree interactions. Small S. myrtina individuals weremost facilitated by establishing and growing up next to a large V. karroo individual, through mechanisms affecting soil water content, bulk density and leaf Ψ. Scutia myrtina establishing in association with other size classes of V. karroo were much less facilitated, showing no significant effects. In contrast, large S. myrtina showed competitive interactions with V. karroo. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
Thicket expansion in a vachellia karroo-dominated landscape and its effect on herbaceous communities
- Authors: Khoza, Marina Rindzani
- Date: 2022-04-06
- Subjects: Savanna ecology South Africa , Forbs South Africa , Grasslands South Africa , Herbaceous plants South Africa , Vegetation dynamics South Africa , Forest canopies South Africa
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291015 , vital:56808
- Description: Grass and forb species found in savannas are highly diverse, contributing to the structure and function of the savanna system. Where mean annual rainfall is seasonal and high enough to support closed canopy vegetation such as forests or thickets, savannas can exist as an alternative stable state maintained by disturbances such as fire and browsing. Biotic and abiotic processes act on savanna and forest (or thicket) systems maintaining both their tree and herbaceous cover at levels that ensure their persistence in those states. Studies have shown that many semi-arid rangelands in South Africa have undergone a rapid increase in tree cover (of both native and non-native species) over the past several decades. This process of increasing tree cover in semi-arid savannas, termed bush encroachment, results in a biome shift, changing landscapes that were once grasslands with few trees to ones dominated by broad-leaved trees with fewer sun-adapted forbs and grasses. The aim of this study was to investigate the impact of changing woody cover and its associated changes in tree composition, tree canopy structure, light dynamics in the understory and herbaceous community composition on Endwell farm in the Eastern Cape. Canopy cover changes between the years 1949 and 2019 were analysed at 51 sites on the farm and related to historical rainfall patterns. There had been a general increase in tree cover over the past several decades on the farm, and many sites showed a change from open (0-15%) in 1949 to low (1635%), moderate (36-50%) and high (51-100%) canopy cover in 2019. In earlier years most sites had a canopy cover below 50%, and the higher canopy cover values (>65%) occurred in more recent decades. Canopy cover of ~ 50% was found to be rare in each decade. This suggests that ~50% canopy cover maybe a transient, unstable state. The period with the highest rate of canopy cover increase was 2002-2013, and this increase coincided with a high mean annual rainfall 10 years prior to 2002 and a high mean annual rainfall in most years between the 20022013 period. The period between 2002 and 2013 also had the highest number of sites transitioning from lower to higher tree canopy cover classes, indicating that rainfall may have been a factor driving bush encroachment during the past several decades. An increase in canopy cover (a decrease in light transmittance) was accompanied by changes in woody species composition during thicket formation. The low canopy cover (high light transmittance) sites were dominated by Vachellia karroo and Scutia myrtina trees, while high tree cover sites had fewer V. karroo and S. myrtina trees and were rather characterised by an abundance of thicket tree species. Species proportion, NMDS and dendrogram plots indicated that sites with a light transmittance range between 50-100% had similar tree species compositions, different from sites with light transmittances <50%. An increase in tree density was strongly correlated to an increase in canopy cover (from 2019 satellite imagery), density of trees > 3m, maximum height reached by trees, diversity of trees, total canopy volume, total canopy area and leaf area index (LAI), and a decrease in light transmittance. A structural equation model (SEM) was used to explore the relationships between canopy characteristics (maximum canopy area, canopy volume, tree diversity, density of trees, density of trees >3m, individual trees and maximum canopy height), aerial canopy cover in 2019, and light transmittance. The model explained 73% of the variation in light transmittance, mostly via the direct effect of canopy characteristics. Canopy characteristics had a strong influence on both aerial cover in 2019 and directly on light transmittance, but canopy cover in 2019 had a weak influence on light transmittance. The herbaceous layer was rich and dominated by C4 grasses such as Eragrostis plana, Sporobolus fimbriatus, Themeda triandra and Digitaria eriantha) and forbs including Hibiscus aethiopicus, Helichrysum dregeanum, Helichrysum nudifolium and Gerbera viridifolia at low canopy cover sites with high light transmittance. In contrast, high tree cover sites had fewer herbaceous species in general. Grass and forb species characteristic of these sites high canopy cover sites were Panicum maximum, Loudetia flavida, Pellaea viridis and Cyperus spp. Different sites with low light transmittance (<50%) had similar herbaceous species composition. Basal cover, richness, abundance and diversity of herbaceous plants decreased significantly with an increase in tree density, density of trees >3 m, canopy volume, canopy area, canopy cover, LAI, and increased significantly with increasing light transmittance. Most grasses had their highest densities at LAI <0.5, which was estimated to correspond to ~75% light transmittance and ~38% canopy cover and then started to decline thereafter. Herbaceous species basal cover was also highest at LAI <0.5. An SEM model indicated that herbaceous diversity, basal cover and richness responded both to light availability and to the structure of the woody vegetation directly (R2 = 0.53). While the effect of light transmittance on herbaceous communities was strong (0.41), there was little difference between the effect of light transmittance and canopy characteristics (-0.35) on herbaceous communities. Two possible threshold points, relating to two types of transitions in vegetation structure, could be deduced from this study. The first threshold occurred at canopy cover ~ 40% (LAI < ~ 0.5, light transmittance ~ 75%), at which point many of the common herbaceous species, including the dominant C4 grasses, began to decline in abundance while the composition remained characteristic of the savanna state. A canopy cover of less than ~ 40% at a site provides a suitable state for a high abundance of grass and forb species which help maintain an open system by facilitating fires. The second threshold marked a compositional shift between savanna and closed-canopy vegetation states. Savanna species (trees, grasses and forbs) dominated at high light transmittances (>50%) and were significantly reduced at low light transmittances (< 50%), indicating a possible species composition threshold at ~50% light transmittance at which a savanna state switches to a thicket (LAI ~ 1 and canopy cover ~70%). This point indicated the point where there was a significant difference in both tree and herbaceous plant compositions, with a marked reduction in the occurrence of C4 grasses at light transmittance <50%. Fire is supressed when the C4 grass layer is lost, and further thicket encroachment will take place causing complete canopy closure. Land managers in this system should start becoming concerned about a reduction in grass biomass when canopy cover reaches about 40% and would have to reduce tree cover before the threshold of 50% light transmittance (70% canopy cover from aerial photos) is reached to maintain a savanna system. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
Thicket expansion in a vachellia karroo-dominated landscape and its effect on herbaceous communities
- Authors: Khoza, Marina Rindzani
- Date: 2022-04-06
- Subjects: Savanna ecology South Africa , Forbs South Africa , Grasslands South Africa , Herbaceous plants South Africa , Vegetation dynamics South Africa , Forest canopies South Africa
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/291015 , vital:56808
- Description: Grass and forb species found in savannas are highly diverse, contributing to the structure and function of the savanna system. Where mean annual rainfall is seasonal and high enough to support closed canopy vegetation such as forests or thickets, savannas can exist as an alternative stable state maintained by disturbances such as fire and browsing. Biotic and abiotic processes act on savanna and forest (or thicket) systems maintaining both their tree and herbaceous cover at levels that ensure their persistence in those states. Studies have shown that many semi-arid rangelands in South Africa have undergone a rapid increase in tree cover (of both native and non-native species) over the past several decades. This process of increasing tree cover in semi-arid savannas, termed bush encroachment, results in a biome shift, changing landscapes that were once grasslands with few trees to ones dominated by broad-leaved trees with fewer sun-adapted forbs and grasses. The aim of this study was to investigate the impact of changing woody cover and its associated changes in tree composition, tree canopy structure, light dynamics in the understory and herbaceous community composition on Endwell farm in the Eastern Cape. Canopy cover changes between the years 1949 and 2019 were analysed at 51 sites on the farm and related to historical rainfall patterns. There had been a general increase in tree cover over the past several decades on the farm, and many sites showed a change from open (0-15%) in 1949 to low (1635%), moderate (36-50%) and high (51-100%) canopy cover in 2019. In earlier years most sites had a canopy cover below 50%, and the higher canopy cover values (>65%) occurred in more recent decades. Canopy cover of ~ 50% was found to be rare in each decade. This suggests that ~50% canopy cover maybe a transient, unstable state. The period with the highest rate of canopy cover increase was 2002-2013, and this increase coincided with a high mean annual rainfall 10 years prior to 2002 and a high mean annual rainfall in most years between the 20022013 period. The period between 2002 and 2013 also had the highest number of sites transitioning from lower to higher tree canopy cover classes, indicating that rainfall may have been a factor driving bush encroachment during the past several decades. An increase in canopy cover (a decrease in light transmittance) was accompanied by changes in woody species composition during thicket formation. The low canopy cover (high light transmittance) sites were dominated by Vachellia karroo and Scutia myrtina trees, while high tree cover sites had fewer V. karroo and S. myrtina trees and were rather characterised by an abundance of thicket tree species. Species proportion, NMDS and dendrogram plots indicated that sites with a light transmittance range between 50-100% had similar tree species compositions, different from sites with light transmittances <50%. An increase in tree density was strongly correlated to an increase in canopy cover (from 2019 satellite imagery), density of trees > 3m, maximum height reached by trees, diversity of trees, total canopy volume, total canopy area and leaf area index (LAI), and a decrease in light transmittance. A structural equation model (SEM) was used to explore the relationships between canopy characteristics (maximum canopy area, canopy volume, tree diversity, density of trees, density of trees >3m, individual trees and maximum canopy height), aerial canopy cover in 2019, and light transmittance. The model explained 73% of the variation in light transmittance, mostly via the direct effect of canopy characteristics. Canopy characteristics had a strong influence on both aerial cover in 2019 and directly on light transmittance, but canopy cover in 2019 had a weak influence on light transmittance. The herbaceous layer was rich and dominated by C4 grasses such as Eragrostis plana, Sporobolus fimbriatus, Themeda triandra and Digitaria eriantha) and forbs including Hibiscus aethiopicus, Helichrysum dregeanum, Helichrysum nudifolium and Gerbera viridifolia at low canopy cover sites with high light transmittance. In contrast, high tree cover sites had fewer herbaceous species in general. Grass and forb species characteristic of these sites high canopy cover sites were Panicum maximum, Loudetia flavida, Pellaea viridis and Cyperus spp. Different sites with low light transmittance (<50%) had similar herbaceous species composition. Basal cover, richness, abundance and diversity of herbaceous plants decreased significantly with an increase in tree density, density of trees >3 m, canopy volume, canopy area, canopy cover, LAI, and increased significantly with increasing light transmittance. Most grasses had their highest densities at LAI <0.5, which was estimated to correspond to ~75% light transmittance and ~38% canopy cover and then started to decline thereafter. Herbaceous species basal cover was also highest at LAI <0.5. An SEM model indicated that herbaceous diversity, basal cover and richness responded both to light availability and to the structure of the woody vegetation directly (R2 = 0.53). While the effect of light transmittance on herbaceous communities was strong (0.41), there was little difference between the effect of light transmittance and canopy characteristics (-0.35) on herbaceous communities. Two possible threshold points, relating to two types of transitions in vegetation structure, could be deduced from this study. The first threshold occurred at canopy cover ~ 40% (LAI < ~ 0.5, light transmittance ~ 75%), at which point many of the common herbaceous species, including the dominant C4 grasses, began to decline in abundance while the composition remained characteristic of the savanna state. A canopy cover of less than ~ 40% at a site provides a suitable state for a high abundance of grass and forb species which help maintain an open system by facilitating fires. The second threshold marked a compositional shift between savanna and closed-canopy vegetation states. Savanna species (trees, grasses and forbs) dominated at high light transmittances (>50%) and were significantly reduced at low light transmittances (< 50%), indicating a possible species composition threshold at ~50% light transmittance at which a savanna state switches to a thicket (LAI ~ 1 and canopy cover ~70%). This point indicated the point where there was a significant difference in both tree and herbaceous plant compositions, with a marked reduction in the occurrence of C4 grasses at light transmittance <50%. Fire is supressed when the C4 grass layer is lost, and further thicket encroachment will take place causing complete canopy closure. Land managers in this system should start becoming concerned about a reduction in grass biomass when canopy cover reaches about 40% and would have to reduce tree cover before the threshold of 50% light transmittance (70% canopy cover from aerial photos) is reached to maintain a savanna system. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
Evaluating the physiological, morphological and nutritional effects of elevated atmospheric CO2 and drought on select South African maize cultivars
- Authors: Bopape, Tebadi Mamadiga
- Date: 2021-10
- Subjects: Corn Varieties South Africa , Dry farming South Africa , Corn Effect of atmospheric carbon dioxide on South Africa , Corn Effect of drought on South Africa , Corn Morphology , Corn Nutrition , Corn Physiological effect
- Language: English
- Type: Master theses , text
- Identifier: http://hdl.handle.net/10962/189020 , vital:44807
- Description: Thesis embargoed. Expected Release date October 2022. , Thesis (MSc) -- Faculty of Science, Botany, 2021
- Full Text:
- Authors: Bopape, Tebadi Mamadiga
- Date: 2021-10
- Subjects: Corn Varieties South Africa , Dry farming South Africa , Corn Effect of atmospheric carbon dioxide on South Africa , Corn Effect of drought on South Africa , Corn Morphology , Corn Nutrition , Corn Physiological effect
- Language: English
- Type: Master theses , text
- Identifier: http://hdl.handle.net/10962/189020 , vital:44807
- Description: Thesis embargoed. Expected Release date October 2022. , Thesis (MSc) -- Faculty of Science, Botany, 2021
- Full Text:
The conservation, ecology, and distribution of the critically endangered Encephalartos latifrons Lehm
- Authors: Swart, Carin
- Date: 2019
- Subjects: Encephalartos , Cycadaceae , Cycads -- Conservation -- South Africa , Botany, Economic -- South Africa , Rare plants -- South Africa , Endangered plants -- South Africa , Wild plant trade -- Law and legislation -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/94483 , vital:31049
- Description: Cycads have attracted global attention both as horticulturally interesting and often valuable plants; but also as some of the most threatened organisms on the planet. In this thesis I investigate the conservation management, biology, reproductive ecology and distribution of Encephalartos latifrons populations in the wild and draw out conclusions on how best to conserve global cycad biodiversity. I also employ computer-modelling techniques in some of the chapters of this thesis to demonstrate how to improve conservation outcomes for E. latifrons and endangered species in general, where information on the distribution, biology and habitat requirements of such species are inherently limited, often precluding robust conservation decision-making. In Chapter 1 of this thesis I introduce the concept of extinction debt and elucidate the importance of in situ cycad conservation. I explain how the concept of extinction debt relates to single species, as well as give details on the mechanisms causing extinction debt in cycad populations. I introduce the six extinction trajectory threshold model and how this relates to extinction debt in cycads. I discuss the vulnerability of cycads to extinction and give an overview of biodiversity policy in South Africa. I expand on how national and global policies contribute to cycad conservation and present various global initiatives that support threatened species conservation. I conclude Chapter 1 by explaining how computer-based models can assist conservation decision-making for rare, threatened, and endangered species in the face of uncertainty. Chapter 2 of this thesis illustrates how a modelling approach, using limited available historical and present day locality information, is a feasible method to determine areas of suitable habitat for E. latifrons and other critically endangered cycad species where locality information is inherently uncommon. Results from this chapter show that conservation planning through structured decision-making may be improved by the use of computer models, even when locality data are limited. These results may be incorporated into biodiversity conservation plans or used to assist conservation-decision makers when undertaking recovery efforts for E. latifrons and may provide guidance to conservation planners and policy makers when undertaking conservation plans to improve cycad biodiversity both nationally and globally. There was limited information available in the biology and ecological requirements of E. latifrons. This information is important when making policy decisions such as the publication of non-detriment findings and compiling biodiversity management plans for this and other cycad species. Chapter 3 investigates the life-history, population structure, fire response and survival of an in situ E. latifrons population. A demographic census was undertaken between 2013 and 2017 on a previously undiscovered population. Population characteristics of the “new” population were compared to the demographics of a well-known and intensively managed population. Results of this chapter show that at least one in situ E. latifrons population is stable and increasing under current environmental conditions. Importantly, the population is naturally recruiting seedlings without the need for artificial pollination. Demographic information described in this chapter is a necessary precursor to undertaking a Population Viability Assessment for the species. This will assist conservation decision-makers when determining the best conservation management strategy for E. latifrons. It may also be useful to apply generalisatons to other cycad species (with similar life-histories and habitat requirements) where there is limited information available on the species biological and ecological requirements, restricting robust policy conservation decision-making. It was important for this study to determine the extent and variety of cone fauna within existing E. latifrons wild populations. Previous anecdotal evidence suggested that E. latifrons is functionally extinct as a species, but evidence to the contrary was found when a healthy, self-sustaining wild population was discovered to be naturally recruiting. It was important to establish the existence and diversity of male cone faunal species (an important breeding site for weevil pollinators) within wild populations. Chapter 4 set out to determine if potential pollinators exist in the wild and if so, how diverse are they and in what numbers. This is the first comprehensive analysis of cone fauna present in wild E. latifrons populations. Equally important was the need to determine if wild populations are capable of producing viable seeds under conditions conducive to natural pollination. Results of this chapter show that there is a relatively high diversity of insect fauna in the male cones of some wild E. latifrons populations. Furthermore, some wild populations are capable of producing viable seeds through natural pollination; even though they may not be naturally recruiting seedlings into the population. A staggered germination pattern displayed by one of the wild E. latifrons populations was studied, suggesting the evolution of an adaptive trait given the stochastic environment (climatically and disturbances such as fire) within which E. latifrons populations may be found. Species recovery (restoration and/or population augmentation) may be the only conservation solution remaining to save endangered species such as E. latifrons from extinction in the wild. Chapter 5 involves the return of 25 seedlings germinated as part of a seed viability experiment (see Chapter 4) back into a wild population from where they originated. The primary threat to seedling survival at the site was livestock activity (grazing/trampling). The population was subsequently fenced off to mitigate this threat and seedlings planted both inside and outside a fenced area to establish if there was a difference in seedling survival between the unprotected and protected sites. A high percentage (92%) of seedlings planted perished in total. None of the seedlings planted outside the fenced area survived over the monitoring period, while only two seedlings planted within the fenced area survived. Survival of the seedlings inside the fenced area was only after placing individual cages on the seedlings to prevent further losses. The primary causes of death for all seedlings included uprooting, and defoliation with some of the seedlings missing completely. This chapter found that the lack of natural seedling recruitment at the site was as a result of livestock activity. Grazing by livestock poses a significant threat to natural recruitment in some E. latifrons populations. Alternative restoration methods are suggested and protection of seedlings while undertaking a restoration/augmentation programme is emphasised. Developing conservation management plans for rare and/or endangered species is often met with high levels of uncertainty, particularly if there is limited information available on the biology and ecological requirements for the species concerned. Population viability analysis (PVA) is often suggested as a tool to determine conservation management scenarios that may enhance wild population persistence. The standard PVA approach is however problematic as it is a time-consuming process requiring the collection of demographic data over long time periods. In addition, the PVA approach does not take in to account non-biological factors which may impede the effective implementation of conservation plans. Chapter 6 of this thesis makes use of a Multi-Criteria Decision Making (MCDM) approach called the Analytical Hierarchy Process (AHP) to decide on the best conservation management strategy for an E. latifrons population. Sensitivity analysis was completed to test the robustness of the decision and to identify which criteria influenced the original results. In this study, the development of the decision tree and criteria judgements, were made solely by the researcher. It is emphasised that the decision outcome may be biased if not conducted as part of a multi-stakeholder workshop using the same approach. Nevertheless, it is recommended that a Population Viability Risk Management (PVRM) assessment be undertaken for E. latifrons using an MCDM approach such as AHP as a prestudy, before the revision of the Biodiversity Management Plan (BMP) for E. latifrons. This method is particularly useful when non-biological criteria are to be incorporated into the decision-making process. It is also a viable and holistic alternative to the standard PVA approach when developing conservation management plans for rare and endangered species. In Chapter 7 I review the concept of extinction debt in cycads using E. latifrons as an example. I assimilate historical information to understand mechanisms that may have impacted on E. latifrons populations in the past. This was done to understand the scale of extinction time lags on E. latifrons and to relate this to its present position on the exitinction trajectory. I recommend aligning South African policies and biodiversity assessments with international initiatives and draw out general conclusions for the conservation of global cycad biodiversity. I conclude by recommending further research for E. latifrons.
- Full Text:
- Authors: Swart, Carin
- Date: 2019
- Subjects: Encephalartos , Cycadaceae , Cycads -- Conservation -- South Africa , Botany, Economic -- South Africa , Rare plants -- South Africa , Endangered plants -- South Africa , Wild plant trade -- Law and legislation -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/94483 , vital:31049
- Description: Cycads have attracted global attention both as horticulturally interesting and often valuable plants; but also as some of the most threatened organisms on the planet. In this thesis I investigate the conservation management, biology, reproductive ecology and distribution of Encephalartos latifrons populations in the wild and draw out conclusions on how best to conserve global cycad biodiversity. I also employ computer-modelling techniques in some of the chapters of this thesis to demonstrate how to improve conservation outcomes for E. latifrons and endangered species in general, where information on the distribution, biology and habitat requirements of such species are inherently limited, often precluding robust conservation decision-making. In Chapter 1 of this thesis I introduce the concept of extinction debt and elucidate the importance of in situ cycad conservation. I explain how the concept of extinction debt relates to single species, as well as give details on the mechanisms causing extinction debt in cycad populations. I introduce the six extinction trajectory threshold model and how this relates to extinction debt in cycads. I discuss the vulnerability of cycads to extinction and give an overview of biodiversity policy in South Africa. I expand on how national and global policies contribute to cycad conservation and present various global initiatives that support threatened species conservation. I conclude Chapter 1 by explaining how computer-based models can assist conservation decision-making for rare, threatened, and endangered species in the face of uncertainty. Chapter 2 of this thesis illustrates how a modelling approach, using limited available historical and present day locality information, is a feasible method to determine areas of suitable habitat for E. latifrons and other critically endangered cycad species where locality information is inherently uncommon. Results from this chapter show that conservation planning through structured decision-making may be improved by the use of computer models, even when locality data are limited. These results may be incorporated into biodiversity conservation plans or used to assist conservation-decision makers when undertaking recovery efforts for E. latifrons and may provide guidance to conservation planners and policy makers when undertaking conservation plans to improve cycad biodiversity both nationally and globally. There was limited information available in the biology and ecological requirements of E. latifrons. This information is important when making policy decisions such as the publication of non-detriment findings and compiling biodiversity management plans for this and other cycad species. Chapter 3 investigates the life-history, population structure, fire response and survival of an in situ E. latifrons population. A demographic census was undertaken between 2013 and 2017 on a previously undiscovered population. Population characteristics of the “new” population were compared to the demographics of a well-known and intensively managed population. Results of this chapter show that at least one in situ E. latifrons population is stable and increasing under current environmental conditions. Importantly, the population is naturally recruiting seedlings without the need for artificial pollination. Demographic information described in this chapter is a necessary precursor to undertaking a Population Viability Assessment for the species. This will assist conservation decision-makers when determining the best conservation management strategy for E. latifrons. It may also be useful to apply generalisatons to other cycad species (with similar life-histories and habitat requirements) where there is limited information available on the species biological and ecological requirements, restricting robust policy conservation decision-making. It was important for this study to determine the extent and variety of cone fauna within existing E. latifrons wild populations. Previous anecdotal evidence suggested that E. latifrons is functionally extinct as a species, but evidence to the contrary was found when a healthy, self-sustaining wild population was discovered to be naturally recruiting. It was important to establish the existence and diversity of male cone faunal species (an important breeding site for weevil pollinators) within wild populations. Chapter 4 set out to determine if potential pollinators exist in the wild and if so, how diverse are they and in what numbers. This is the first comprehensive analysis of cone fauna present in wild E. latifrons populations. Equally important was the need to determine if wild populations are capable of producing viable seeds under conditions conducive to natural pollination. Results of this chapter show that there is a relatively high diversity of insect fauna in the male cones of some wild E. latifrons populations. Furthermore, some wild populations are capable of producing viable seeds through natural pollination; even though they may not be naturally recruiting seedlings into the population. A staggered germination pattern displayed by one of the wild E. latifrons populations was studied, suggesting the evolution of an adaptive trait given the stochastic environment (climatically and disturbances such as fire) within which E. latifrons populations may be found. Species recovery (restoration and/or population augmentation) may be the only conservation solution remaining to save endangered species such as E. latifrons from extinction in the wild. Chapter 5 involves the return of 25 seedlings germinated as part of a seed viability experiment (see Chapter 4) back into a wild population from where they originated. The primary threat to seedling survival at the site was livestock activity (grazing/trampling). The population was subsequently fenced off to mitigate this threat and seedlings planted both inside and outside a fenced area to establish if there was a difference in seedling survival between the unprotected and protected sites. A high percentage (92%) of seedlings planted perished in total. None of the seedlings planted outside the fenced area survived over the monitoring period, while only two seedlings planted within the fenced area survived. Survival of the seedlings inside the fenced area was only after placing individual cages on the seedlings to prevent further losses. The primary causes of death for all seedlings included uprooting, and defoliation with some of the seedlings missing completely. This chapter found that the lack of natural seedling recruitment at the site was as a result of livestock activity. Grazing by livestock poses a significant threat to natural recruitment in some E. latifrons populations. Alternative restoration methods are suggested and protection of seedlings while undertaking a restoration/augmentation programme is emphasised. Developing conservation management plans for rare and/or endangered species is often met with high levels of uncertainty, particularly if there is limited information available on the biology and ecological requirements for the species concerned. Population viability analysis (PVA) is often suggested as a tool to determine conservation management scenarios that may enhance wild population persistence. The standard PVA approach is however problematic as it is a time-consuming process requiring the collection of demographic data over long time periods. In addition, the PVA approach does not take in to account non-biological factors which may impede the effective implementation of conservation plans. Chapter 6 of this thesis makes use of a Multi-Criteria Decision Making (MCDM) approach called the Analytical Hierarchy Process (AHP) to decide on the best conservation management strategy for an E. latifrons population. Sensitivity analysis was completed to test the robustness of the decision and to identify which criteria influenced the original results. In this study, the development of the decision tree and criteria judgements, were made solely by the researcher. It is emphasised that the decision outcome may be biased if not conducted as part of a multi-stakeholder workshop using the same approach. Nevertheless, it is recommended that a Population Viability Risk Management (PVRM) assessment be undertaken for E. latifrons using an MCDM approach such as AHP as a prestudy, before the revision of the Biodiversity Management Plan (BMP) for E. latifrons. This method is particularly useful when non-biological criteria are to be incorporated into the decision-making process. It is also a viable and holistic alternative to the standard PVA approach when developing conservation management plans for rare and endangered species. In Chapter 7 I review the concept of extinction debt in cycads using E. latifrons as an example. I assimilate historical information to understand mechanisms that may have impacted on E. latifrons populations in the past. This was done to understand the scale of extinction time lags on E. latifrons and to relate this to its present position on the exitinction trajectory. I recommend aligning South African policies and biodiversity assessments with international initiatives and draw out general conclusions for the conservation of global cycad biodiversity. I conclude by recommending further research for E. latifrons.
- Full Text:
Studies in leaf domatia-mite mutualism in South Africa
- Authors: Situngu, Sivuyisiwe
- Date: 2018
- Subjects: Insect-plant relationships , Mites , Mutualism (Biology) , Biological pest control agents
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/63334 , vital:28394
- Description: Plants have various traits which allow them to cope and resist their enemies including both insects and fungi . In some cases such traits allow plants to build mutualistic relationships with natural enemies of plant pests. This is the case in many dicotyledonous plants which produce leaf domatia. Leaf domatia are plant cavities usually found in the axils of major veins in the abaxial side of leaves. They are usually associated with mites and often mediate mutualistic relationships with predacious mites. Mites use leaf domatia primarily for shelter, to reproduce, and to develop. In turn, plants benefit from having predaceous mites on their leaves, because mites act as plant “bodyguards” and offer defence against pathogens and small arthropod herbivores. This phenomenon has been well documented all over the world, but Africa remains disproportionally understudied. The aim of this study was to fill the gap that exists in our knowledge of the extent of the distribution of leaf domatia-mite mutualisms and generate a better understanding of the diversity of mites found within leaf domatia from an African perspective. This was done by surveying plant species that bear leaf domatia from different vegetation types in South Africa. The plants with leaf domatia were examined for the presence of mites in order to determine patterns of mite abundance and diversity and, in so doing, address the following questions: • Does each tree species host have a specific mite or mite assemblage? • Do some mites prefer certain types of leaf domatia? • Do mites prefer a specific place in the tree canopy and does the microclimate in the tree canopy affect the distribution of mites? • Do different vegetation sites and types differ in their mite diversity and species composition? • Does mite abundance and diversity vary with seasons? Do coffee plantations have a different suite of mites than the adjacent forest? The anatomical structures of leaf domatia from six selected plant species(Coffea arabica, Gardenia thunbergia, Rothmannia capensis, Rothmannia globosa (Rubiaceae), Ocotea bullata (Lauraceae) and Tecoma capensis (Bignoniaceae) with different types of leaf domatia were also studied. The results from this study suggested that the key futures which distinguish domatia are the presence of an extra layer of tissue in the lower epidermis, a thick cuticle, cuticular folds, the presence of trichomes and an invagination. This study provides a better understating of the structure of leaf domatia. Leaf domatia bearing plants are widely distributed in South Africa, and species and vegetation-specific associations were assessed. Over 250 plant specimens with leaf domatia were collected and examined and more than 60 different mite species were found in association with the sampled plant species. The majority of mites found within the domatia of these tree species were predaceous and included mites from Stigmatidae, Tydeidae and Phytoseiidae. Furthermore, 15 new species were collected, suggesting that mites are understudied in South Africa. This study showed that the different vegetation types sampled did not differ markedly in terms of their mite biota and that similar mites were found across the region, and the association between leaf domatia and mites was found to be opportunistic and that mites had no preference for any particular domatia types. No host specificity relationship was observed between plants and mites. The assessment of mites associated with Coffea arabica showed that indigenous mites are able to colonise and establish a beneficial mutualism on exotic species. This is important as it ascertains that economically important plants that are cultivated outside their area of natural distribution can still benefit from this mutualism. This study also found that mite abundance and diversity in plants with leaf domatia were influenced by factors such as temperature, relative humidity and rainfall. Mite communities found in association with domatia changed as the year progressed and over the seasons. The seasonal fluctuations varied between the sampled plant species. In addition, this study found that mites were sensitive to extreme environmental conditions, and thus, mites preferred leaves found in the lower parts of the tree canopy and avoided exposed leaves. This study provides a better understanding of the distribution of domatia bearing plants in South Africa and their associated mites and contributes to our knowledge of the biodiversity of mites in the region. Furthermore, this study also adds to our understanding of the leaf domatia - mite mutualism in Africa. The applied example looking at the plant-mite mutualism in Coffea arabica highlights the importance of this mutualism in commercial plants.
- Full Text:
- Authors: Situngu, Sivuyisiwe
- Date: 2018
- Subjects: Insect-plant relationships , Mites , Mutualism (Biology) , Biological pest control agents
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/63334 , vital:28394
- Description: Plants have various traits which allow them to cope and resist their enemies including both insects and fungi . In some cases such traits allow plants to build mutualistic relationships with natural enemies of plant pests. This is the case in many dicotyledonous plants which produce leaf domatia. Leaf domatia are plant cavities usually found in the axils of major veins in the abaxial side of leaves. They are usually associated with mites and often mediate mutualistic relationships with predacious mites. Mites use leaf domatia primarily for shelter, to reproduce, and to develop. In turn, plants benefit from having predaceous mites on their leaves, because mites act as plant “bodyguards” and offer defence against pathogens and small arthropod herbivores. This phenomenon has been well documented all over the world, but Africa remains disproportionally understudied. The aim of this study was to fill the gap that exists in our knowledge of the extent of the distribution of leaf domatia-mite mutualisms and generate a better understanding of the diversity of mites found within leaf domatia from an African perspective. This was done by surveying plant species that bear leaf domatia from different vegetation types in South Africa. The plants with leaf domatia were examined for the presence of mites in order to determine patterns of mite abundance and diversity and, in so doing, address the following questions: • Does each tree species host have a specific mite or mite assemblage? • Do some mites prefer certain types of leaf domatia? • Do mites prefer a specific place in the tree canopy and does the microclimate in the tree canopy affect the distribution of mites? • Do different vegetation sites and types differ in their mite diversity and species composition? • Does mite abundance and diversity vary with seasons? Do coffee plantations have a different suite of mites than the adjacent forest? The anatomical structures of leaf domatia from six selected plant species(Coffea arabica, Gardenia thunbergia, Rothmannia capensis, Rothmannia globosa (Rubiaceae), Ocotea bullata (Lauraceae) and Tecoma capensis (Bignoniaceae) with different types of leaf domatia were also studied. The results from this study suggested that the key futures which distinguish domatia are the presence of an extra layer of tissue in the lower epidermis, a thick cuticle, cuticular folds, the presence of trichomes and an invagination. This study provides a better understating of the structure of leaf domatia. Leaf domatia bearing plants are widely distributed in South Africa, and species and vegetation-specific associations were assessed. Over 250 plant specimens with leaf domatia were collected and examined and more than 60 different mite species were found in association with the sampled plant species. The majority of mites found within the domatia of these tree species were predaceous and included mites from Stigmatidae, Tydeidae and Phytoseiidae. Furthermore, 15 new species were collected, suggesting that mites are understudied in South Africa. This study showed that the different vegetation types sampled did not differ markedly in terms of their mite biota and that similar mites were found across the region, and the association between leaf domatia and mites was found to be opportunistic and that mites had no preference for any particular domatia types. No host specificity relationship was observed between plants and mites. The assessment of mites associated with Coffea arabica showed that indigenous mites are able to colonise and establish a beneficial mutualism on exotic species. This is important as it ascertains that economically important plants that are cultivated outside their area of natural distribution can still benefit from this mutualism. This study also found that mite abundance and diversity in plants with leaf domatia were influenced by factors such as temperature, relative humidity and rainfall. Mite communities found in association with domatia changed as the year progressed and over the seasons. The seasonal fluctuations varied between the sampled plant species. In addition, this study found that mites were sensitive to extreme environmental conditions, and thus, mites preferred leaves found in the lower parts of the tree canopy and avoided exposed leaves. This study provides a better understanding of the distribution of domatia bearing plants in South Africa and their associated mites and contributes to our knowledge of the biodiversity of mites in the region. Furthermore, this study also adds to our understanding of the leaf domatia - mite mutualism in Africa. The applied example looking at the plant-mite mutualism in Coffea arabica highlights the importance of this mutualism in commercial plants.
- Full Text:
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