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Systematics and biogeography of forest snails, chondrocyclus (mollusca: gastropoda: caenogastropoda: cyclophoridae) in Southern Africa

  • Authors: Cole, Mary Louise
  • Date: 2017
  • Subjects: Chondrocyclus , Mollusks -- South Africa , Cyclophoridae -- South Africa
  • Language: English
  • Type: text , Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10962/4356 , vital:20651
  • Description: This study presents a molecular phylogeny and systematic revision of Chondrocyclus, the major South African group of the large family of operculate terrestrial molluscs, the Cyclophoridae. Chondrocyclus snails are small gastropods found in forest and moist thicket throughout South Africa. This is the first detailed systematic treatment of a group of Cyclophoridae in mainland Africa and the first to provide molecular data. This study complements regional studies on the systematics of the family in Asia and provides comparative data for studies of higher level relationships within the Cyclophoridae. Phylogenetic reconstruction by BI and ML methods of combined and single gene datasets of 16S and CO 1 all showed Chondrocyclus to be monophyletic and recovered five well-supported clades that corresponded to groups of populations identifiable on the basis of combinations of morphological characters. Species were diagnosed morphologically and were shown to be genetically distinct lineages. Informative morphological features include shell dimensions, protoconch, periostracum, operculum, radula and penis. Two species in Afromontane regions of Zimbabwe and Malawi respectively are excluded from Chondrocyclus based on morphology and tentatively placed in Cyathopoma. Diversity recognised within the genus more than doubled, from a previous seven South African species to seventeen. Re-descriptions of established species and descriptions of new species are provided, together with photographs of morphological characteristics. New taxon names and nomenclatural acts within it are disclaimed and are therefore not available in the sense of the International Code of Zoological Nomenclature until validly published elsewhere. Several cryptic species within previously widespread “species” and unrecorded narrowly endemic species were documented. The clade consisting of populations of “Chondrocyclus isipingoensis”, now considered to be a species complex, was sister to a group containing the other four clades. The “Isipingoensis” clade occurs widely in Afromontane regions, along the Great Escarpment, and on the south-east coast. The other four clades occur from Zululand to the Cape Peninsula with a pattern of east-west lineage turnover. The biogeography of Chondrocyclus is interpreted by comparison with concordant patterns in other terrestrial molluscs and unrelated taxa with poor dispersal ability. This study complements other research on composition, spatial distribution and phylogenetic diversity of low-vagility invertebrates and expands the data available for biodiversity conservation in South Africa.
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  • Date Issued: 2017

The phenologies of macadamia (Proteaceae) and thrips (Insecta: Thysanoptera) communities in Mpumalanga Province, South Africa

  • Authors: Hepburn, Colleen
  • Date: 2017
  • Subjects: Macadamia nut -- South Africa , Macadamia nut -- Ecology -- South Africa , Macadamia nut -- Diseases and pests -- South Africa , Thrips -- South Africa
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:21183 , http://hdl.handle.net/10962/6817
  • Description: Macadamia (Proteaceae) is indigenous to Australia; four of the nine species have been used in plant breeding for cultivation and the production of a rapidly growing product. First introduced to Hawaii in the 1880s, macadamias’ potential as a crop was only really considered in 1910. It is due to the early Hawaiian pioneers’ research and the development of Hawaiian cultivars upon which most of the current world’s production is based today. Prior to the 1980s, cultivation in Australia was based mainly on Hawaiian cultivars. Extensive research has been conducted on cultivar development, performance, best practice, production, crop protection and processing. South Africa has become one of the world’s leading producers and exporters of macadamias. The cultivation of macadamia in South Africa began 80 years ago, but the phenology of macadamia has not been rigorously studied under local conditions, and neither has the thrips communities in macadamia. Data collected during this study on the macadamia phenological stages can be used as a foundation on which seasonal data of all insect pests can be plotted, as a basis on which an extensive Integrated Pest Management (IPM) programme can be developed for the macadamia industry in South Africa. Extensive sampling of thrips communities present in macadamias was undertaken over two years, with more than 142,000 individuals collected. The most basic, common trait into which specimens could be sorted were colour groups. Specimens from each colour group were identified through slide-mounting individuals. Fifteen species of thrips were identified to species-level, excluding specimens from the Panchaetothripinae, Haplothrips and Scolothrips which occurred only periodically. The presence of larvae indicated that macadamia is a host plant for some species. Due to their size and morphology, identification i of the total collection could not be processed to species level using a dissection microscope, although Scirtothrips aurantii Faure were distinguishable from other species and their distribution over the seasons observed. Due to logistical constraints and events beyond the author’s control, the results are mainly qualitative. There seems to be phenological variation within and between cultivars. The date of anthesis and duration of immature nut-drop was estimated; some cultivars set out- of-season flowers and nuts; this “secondary crop” could have far-reaching effects on the implementation of an IPM programme. Comparisons of the phenological data of macadamia and thrips showed the highest abundances and diversity of thrips species occurred when flowers were present. An extensive study of abscised nuts showed no significant difference between most cultivars or at the sites where management practices were implemented and those sites where these practices were not. There was however a consistent difference between the two seasons. There was no difference in maturity of abscised nuts, regardless of whether thrips damage to the husk was present or not. Excessive Bathycoelia distincta (Hemiptera: Pentatomidae) damage was found on the kernels of the abscised nuts processed for maturity testing, which is more likely to have been the primary cause of abscission. The Author’s opinion is that thrips damage to the outer husk does not lead to abscission of maturing nuts. Ascertaining the cause of abscission at nut-set and immature nut-drop is more problematic as there are numerous other potential causes. Damage to new flush, especially the late summer flush essential for the build-up of carbohydrates and resources for the following yield, should be carefully monitored and controlled when necessary.
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  • Date Issued: 2017

Phylogenetics of the keratin-feeding beetle family Trogidae (Coleoptera: Scarabaeoidea)

  • Authors: Strümpher, Werner Petrus
  • Date: 2016
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10962/1232 , vital:20037
  • Description: Trogidae constitute a monophyletic and biologically unique family within the Scarabaeoidea, being the only keratinophagous group in its superfamily. Traditionally, the family has been divided into three distinctive genera, Omorgus Erichson, Polynoncus Burmeister, and Trox Fabricius. Although the taxonomy of the group is relatively well studied, recently changes to the existing classification have been proposed without the family as currently constituted being subjected to phylogenetic analyses. In this study I present the first molecular phylogeny for this cosmopolitan family, based on three partially sequenced gene regions: 16SrRNA, 18S rRNA and 28S rRNA domain 2. Analyses resolved relationships between and within genera and subgenera that are largely congruent with existing taxonomic hypotheses based on morphology. I recovered four well-supported radiations: Polynoncus, Omorgus, Holarctic Trox and Afrotropical Phoberus. One of the more surprising results was the monophyly of Phoberus. Based on the evidence, I propose reinstating the genus Phoberus to accommodate all Afrotropical (including Madagascan endemic) species. The results re-emphasise the validity of Scholtz’s (1986a) classification system for the genus Omorgusand its subgeneraand provide evidence of an African origin for Madagascan trogids. Divergence analysis was able to date the major events for the origin of extant lineages of Trogidae. The subsequent diversification of the major lineages is largely attributed to Pangaean and Gondwanan vicariance events in the Mid-Jurassic and early Late Cretaceous, respectively. The separation of the landmasses resulted in the evolution of four distinct groups: Omorgus, Polynoncus, Trox and Phoberus. The monophyletic subgenus Phoberus MacLeay is of particular interest; about one-third (14 of 40) of the species in the Afrotropical region have lost the ability to fly. To gain insights into the evolution of flightlessness in this clade, phylogenetic relationships among species were inferred using molecular sequence data. Four partial sequences of four genes (COI, 16S, 18S and 28S domain 2) were obtained for 27 species, covering all of the recognised species-groups. Estimated times of divergence were based on published mutation rates for COI. The results recovered eight monophyletic lineages, supporting the morphology-based subdivisions of the genus. Flightlessness evolved at least five times within the subgenus. There is no strong support for the re-acquisition of functional wings once they are lost. Diversification, and the present relictual distributions, in African Phoberus can be linked to climatic and geological events associated with the Miocene and Pliocene Climate Optimum in southern Africa. The evolution of flightlessness in Phoberus is consistent with the habitat stability hypothesis. All flightless species occupy refugial areas with relatively long-term environmental stability. Phoberus is a promising model group for studying evolutionary trends relating to flightlessness, speciation and biogeography. Flightlessness is a counterintuitive evolutionary development, given the many advantages of flight. To interpret the diversification in the flightless Phoberus capensis Scholtz, the phylogenetic relationships among several populations of P. capensis are investigated. Phylogenetic relationships among populations were inferred using molecular sequence data that suggested three distinct evolutionary lineages, which was also supported by morphological characters. Divergence time estimates suggest a Pliocene-Pleistocene diversification. Based on these results, it is suggested that P. capensis experienced climatically-driven allopatric speciation with sheltered Afrotemperate forests and high mountain peaks serving as important refugia in response to climatic exacerbations. The P. capensis complex thus represents a speciation process in which flight-restricted populations evolved in close allopatry, possibly as recently as the Pleistocene. Two of the three divergent and geographically distinct lineages are described as novel species. This study represents the most recent comprehensive work on the Trogidae. On the basis of this study, it is proposed that taxonomic changes to the generic classification of the family be made. Trogidae are formally divided into two subfamilies, Omorginae and Troginae. The subgenus Phoberus is restored to genus rank to include all the Afrotropical species, and Afromorgus is confirmed at subgeneric rank. The genus Madagatrox is synonymised with Phoberus.
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  • Date Issued: 2016

DNA-based identification of forensically significant beetles from Southern Africa

  • Authors: Collett, Isabel Judith
  • Date: 2015
  • Subjects: Carrion insects , Forensic entomology , Cleridae , Dermestidae , Silphidae , Staphylinidae , Scarabaeidae , Histeridae
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5923 , http://hdl.handle.net/10962/d1017801
  • Description: Necrophilous insects, if correctly identified, can provide useful forensic information. Research in this area has focussed on flies and beetles remain comparatively under-studied, partly because some adult carrion beetles are difficult to identify morphologically, as are their juvenile stages, often requiring specialist expertise in both cases. Molecular taxonomy has been proposed as a solution to these problems. DNA “barcodes" are short fragments of mitochondrial cytochrome oxidase I (COI) DNA that are anticipated to delineate species. This approach is becoming increasingly popular, but has been met with varying enthusiasm from taxonomists. This thesis examines their use in identifying forensically significant beetles.The DNA barcodes of 234 specimens of 25 forensically significant southern African beetle species from seven families (Cleridae, Dermestidae, Silphidae, Staphylinidae, Scarabaeidae, Trogidae and Histeridae) were obtained. Thirty-three initial barcode amplification failures were overcome by using primers other than the standard Folmer pair, undermining the barcode concept’s hope of universal primers that would allow even non-specialists to produce barcodes. Another 150 specimens (64%) entirely failed to yield barcodes, including 18 fresh specimens of three species of Trogidae, implying another lack of universality of the barcoding protocol. The majority of the beetles clustered with confamilials on neighbour-joining and maximum likelihood trees, but 1.3% of the barcodes failed to cluster with their respective families, raising questions concerning the associating power of barcodes. The identification tools of the GenBank and BOLD on-line DNA sequence databases identified 21% of the specimens to the species level, 6% of them correctly. There was evidence of a paralogous sequence in the Cleridae that, while supporting identification now that it has been associated with a morphological identification, would hamper attempts at identification by clustering or phylogenetic analysis.Distance and haplotype network analyses of the barcodes of six widespread species showed that they are not geographically structured. Barcodes are thus unlikely to be indicators of the region of origin of a species and will not determine whether a corpse has been relocated after death. To assess whether a different mitochondrial DNA fragment might address (some of) these problems, a 2.2 kb fragment extending from the 5’ end of the COI gene to the 3’ end of the Cytochrome Oxidase II (COII) gene was analysed for nine species. It was found that, for Dermestidae, Scarabaeidae and Histeridae, higher degrees of diversity occurred downstreamof the barcode region, but the region of highest diversity in the Cleridae was in the barcode region. Thus, finding a more reliable fragment along the COI-COII region for each family may make robust and guaranteed DNA-based identification of these beetles more likely. The possibility of a forensic specimen being incorrectly or not identified based on its barcode alone exists in about 40% of cases, even with the new barcodes reported here. Forensic science sets a very high bar in assessing the performance of its techniques, and it is concluded that barcodes currently have unsettling failure rates as court-worthy evidence.
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  • Date Issued: 2015

Gene expression analysis of Thaumatotibia leucotreta in response to the Cryptophlebia leucotreta granulovirus

  • Authors: Ridgeway, Jaryd Antony
  • Date: 2015
  • Subjects: Gene expression , Insects -- Viruses , Tortricidae -- Viruses
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5931 , http://hdl.handle.net/10962/d1017809
  • Description: Gene expression studies provide baseline information on the interactions of insects with their environment. Despite the importance of this information, limited gene expression data are available for most insect pests, including the family Tortricidae (Lepidoptera), which includes Thaumatotibia leucotreta (Meyr), an important agricultural pest in Africa. Because T. leucotreta can be controlled successfully by a granulovirus, this system is a good model for exploring insect-virus susceptibility. The main aim of this study was to investigate gene expression of T. leucotreta in responce to virus infection. However, before pursuing this aim, two objectives required completion. First, the most suitable RNA extraction method for insects needed to be determined and second, the most suitable reference genes for qPCR for Tortricidae pests needed to be identified. Once these objectives were accomplished, the response of T. leucotreta to its granulovirus was evaluated at different temperatures and points after infection.Four RNA extraction methods, the RNeasy® Mini Kit, SV Total RNA isolation system, TRIzol® reagent, and a CTAB-based method, were compared using two beetle and two moth species, including T. leucotreta. The quality of extracted RNA was similar for all four species for all extraction methods. Based on several criteria, the best RNA extraction method was the SV Total RNA isolation system. Six candidate reference genes were evaluated for qPCR using different tissue types of T. leucotreta and two other Tortricidae pests. Additionally, reference genes were evaluated for T. leucotreta with and without its granulovirus at different temperatures. Reference gene stability was found to be dependent on species and tissue type. Overall the most suitable combination of reference genes for T. leucotreta were α-actin, arginine kinase and elongation factor 1-α.Gene expression of T. leucotreta in response to granulovirus infection at different temperatures and intervals after infection was evaluated by qPCR using 13 target genes associated with the infection process. Most genes were down-regulated after 24 and 48 h.p.i. However, after 72 h.p.i most genes were up-regulated. The same trend was observed at different temperatures, where most genes were down-regulated at 15°C and 25°C but up-regulated at 35°C. These results show that there is a dynamic gene expression response in T. leucotreta due to granulovirus infection under different conditions. Not only do these findings provide insight into the control of this tortricid pest, they also contribute further to our knowledge of insect-virus interactions.
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  • Date Issued: 2015

Molecular systematics and biology of two closely related blowflies : Lucilia sericata and Lucilia cuprina

  • Authors: Williams, Kirstin Alexa
  • Date: 2015
  • Subjects: Lucilia sericata , Lucilia cuprina
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:5934 , http://hdl.handle.net/10962/d1017812
  • Description: The greenbottle blowflies, Lucilia sericata (Meigen, 1826) and Lucilia cuprina (Wiedemann, 1830) (Diptera: Calliphoridae) are very difficult to distinguish on the basis of their external morphology. The literature suggests that these two species may be interbreeding. Sequencing two nuclear (28S rRNA and Period) and one mitochondrial (COI) gene indicated that there has been an ancient hybridization event and that mtDNA of L. sericata has become fixed in a lineage of L. cuprina through mtDNA introgression, possibly involving Wolbachia infection. This has implications for identifications of these species based on mtDNA alone. No study has shown explicitly that hybrids of L. sericata and L. cuprina can be identified morphologically. Morphological characters used to identify L. sericata and L. cuprina were scored and tested using specimens of both species and known hybrids. Discriminant function analysis of the characters successfully separated the specimens into three unambiguous groups – L. sericata, L. cuprina and hybrids. This is the first evidence that hybrids of these two species can be identified from physical characteristics.Lucilia sericata and L. cuprina have medical, veterinary and forensic importance. Knowing their distribution in South Africa would allow more effective management and utilisation of these flies. Their predicted geographic distributions in South Africa were modelled using maximum entropy analysis of selected climatic variables. The most important environmental variables in modelling their distributions were magnitude of monthly rainfall and the magnitude of the monthly maximum temperature for L. sericata, and the seasonal variation in monthly mean humidity and magnitude of monthly rainfall for L. cuprina. Both species have a widespread distribution in South Africa and one therefore cannot identify specimens of these flies by locality of capture alone.Luciliinae is a diverse and geographically widespread subfamily containing four genera - Hemipyrellia, Lucilia, Dyscritomyia and Hypopygiopsis – that all contain parasitic species ranging from saprophages to obligate parasites. The phylogenetic relationships between these genera are unclear. The 28S rRNA, COI and Period genes of 14 species of Lucilia and Hemipyrellia were partially sequenced and analysed together with 11sequences from GenBank and the Barcode of Life Database (BOLD). Lucilia sericata and L. cuprina were shown to be sister-species. Three cases of paraphylly were identified within Lucilia that affects identification of these species using mtDNA alone. Hemipyrellia consistently caused Lucilia to be paraphyletic when it was included in analyses, so Hemipyrellia should be synonymized with Lucilia. The relationships of Dyscritomyia and Hypopygiopsis to Lucilia are unclear and further studies are required. No geographic pattern was found within the different forms of parasitism within this group, but the different degrees of parasitism were phylogenetically clustered.
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  • Date Issued: 2015

Systematics and biogeography of Mesobola brevianalis (Boulenger, 1908) (Teleostei: Cyprinidae)

  • Authors: Riddin, Megan Amy
  • Date: 2015
  • Subjects: River sardine , Molecular evolution
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5930 , http://hdl.handle.net/10962/d1017808
  • Description: The accurate identification of fish species, their life stages and their products enables the correct management of fisheries, research and conservation of distinctive populations for long-term survival and sustainability. Mesobola brevianalis Boulenger, 1908, commonly known as the river sardine, is found in many river systems in southern Africa. Because it exhibits widely separated populations showing subtle differences, particularly in colour, it is thought that there may be cryptic species involved. Standard phylogenetic techniques using three genetic markers (mitochondrial COI, nuclear protein RAG1 and nuclear ribosomal 28S rRNA), enabled the building of phylogenetic networks for M. brevianalis and some outgroup species. Consistent patterns of relationship were seen with 28S supporting monophyly. COI and RAG1 suggested that populations that are currently identified as M. brevianalis in fact represent several species. There was sufficiently strong support for the evolutionary independence of the M. brevianalis populations from the Rovuma, Kunene and Orange River Systems to consider them as independent species. The independence of the genus Mesobola was brought into question because Engraulicypris sardella and Rastrineobola argentea were placed within it phylogenetically.Morphometric methods in the form of multivariate truss network analyses, were performed to locate morphological markers for populations. There was little to no variation among most of the populations synonymized under M. brevianalis. Furthermore, neither latitude nor longitude had an effect on the morphological characters that might be linked to functional evolution. A molecular clock analysis of COI data was used to calibrate a paleobiogeographical model which entailed a divergence of lineages starting from an easterly reigning Paleo-Congo Basin, via a hypothetical Paleo-Kalahari Lake that was fragmented by a series of uplifts and drying events beginning ~65 million years ago. Complete evidence supported the synonymisation of the genera Engraulicypris and Mesobola, the resurrection of the species name gariepinus for the Orange River Systempopulation, and the description of two new species: E. ngalala from the Rovuma River System and E. howesi from the Kunene River System.
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  • Date Issued: 2015

The diversity of aquatic insects in the Tsitsikamma region, with implications for aquatic ecosystem conservation

  • Authors: Bellingan, Terence Andrew
  • Date: 2011
  • Subjects: Aquatic insects -- South Africa -- Tsitsikamma , Aquatic insects -- Classification -- South Africa -- Tsitsikamma , Aquatic ecology -- South Africa -- Tsitsikamma , Ecosystem management -- South Africa -- Tsitsikamma , Stream conservation -- South Africa -- Tsitsikamma
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5664 , http://hdl.handle.net/10962/d1005348 , Aquatic insects -- South Africa -- Tsitsikamma , Aquatic insects -- Classification -- South Africa -- Tsitsikamma , Aquatic ecology -- South Africa -- Tsitsikamma , Ecosystem management -- South Africa -- Tsitsikamma , Stream conservation -- South Africa -- Tsitsikamma
  • Description: As a result of research carried out within the last decade to assess the diversity of macroinvertebrates of the Salt River in the Western Cape Province, South Africa, surveys of macroinvertebrates of 20 sites on 11 selected rivers from the same mountain range source were undertaken. This was done to make a preliminary assessment of the conservation status of the rivers of this region. Aquatic insects from the orders Ephemeroptera, Odonata, Plecoptera, Megaloptera, Trichoptera and the dipteran family Simuliidae were collected using techniques to maximize the number of taxa found. The insects collected were identified to species level where possible. Water physicochemical parameters were recorded at all sites for each sampling trip to characterize these rivers and to establish a set of baseline data for future comparisons. These parameters included measurements made on site and analysis of the concentrations of all the major ions in water samples in the laboratory. Multivariate analyses including Principle Components Analysis and Canonical Correspondence Analysis were used to reveal patterns within the water physicochemistry and species distributional data. Results include the identification of 123 species from 70 genera and 30 families. A total of 31 species were found to be undescribed, of which 17 were not previously collected and are thus completely new to science. In addition, four of these species could not be placed into any known genus. The analysis of water physicochemistry showed a clear distinction between rivers of Table Mountain sandstone and Bokkeveld shale origin. Downstream effects of anthropogenic influences were discernable too. Distinct macroinvertebrate assemblages were found based upon stream order and water chemistry composition. pH proved to be the most important driver of invertebrate assemblage composition. The high levels of endemism of the macroinvertebrates found within the upper reaches of these rivers and their degree of ecological specialization make these systems a priority for the conservation of aquatic biodiversity on a national and global scale.
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  • Date Issued: 2011

Historical biogeography of the tribe Platypleurini Schmidt, 1918 (Hemiptera: Cicadidae) with a focus on Southern Africa

  • Authors: Price, Benjamin Wills
  • Date: 2010
  • Subjects: Biogeography -- History -- Africa, Southern Cicadas -- Africa, Southern Cicada (Genus) -- Africa, Southern Biodiversity -- Africa, Southern Cicadas -- Variation -- Africa, Southern
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:5708 , http://hdl.handle.net/10962/d1005394
  • Description: With our contemporary biota under increasing threat of extinction, it is of interest to understand where, why and how biological diversity is generated. If focussed on appropriate taxa, phylogeographic and phylogenetic studies can assist in the identification of both places and processes central to the origin and maintenance of biological diversity. It is explained why southern Africa presents a perfect test-bed for exploring such mechanisms of diversification and why cicadas (Hemiptera: Cicadidae) have proved very suitable tools for studies of historical biogeography. This study then exemplifies these points by providing the first large-scale investigation of the historical biogeography of the tribe Platypleurini Schmidt, 1918, with emphasis on the genus Platypleura Amyot & Seville, 1843 in southern Africa. Standard methods of DNA sequencing provided data from portions of the mitochondrial small subunit ribosomal 16S RNA (16S) and cytochrome oxidase subunits I (COI) and II (COII); and the nuclear elongation factor 1 alpha (EF-1α) from 400 ethanol-preserved specimens. These data were analysed using standard phylogenetic methods and a time scale of diversification was estimated using a Bayesian framework and both fossil data and DNA substitution rates. The results showed that the tribe is too recent to be of Gondwanan origin. The lack of monophyly of the genera represented in both Asia and Africa showed that the tribe needs formal taxonomic revision. Diversification of the African platypleurine genera coincides with aridification in the early Oligocene. Dispersal of Asian platypleurine taxa coincides with the meeting of Africa and Eurasia in the mid-Oligocene. Two radiations within African Platypleura are hypothesised; one distributed over most of sub-Saharan Africa and the second restricted to southern Africa, with clades restricted within regional biomes. Within each of the three focal biomes, cryptic taxonomic diversity was confirmed, suggesting that, even in relatively well understood groups such as the southern African platypleurine cicadas, molecular data can identify further diversity. Although each focal taxon was restricted to non-overlapping biomes, comparison of the three biomes highlighted interactions between palaeoclimates and fixed landscape features (coastal topography, river catchments and escarpments) as causative agents of vicariance, dispersal, extinction and diversification of these volant insects. The results of using co-distributed species for comparative study cautions against making inferences based on single-taxon datasets and highlights the need to use many, evolutionarily independent taxa when identifying mechanisms of diversification. The dating analyses imply that within-species lineage diversification occurred overwhelmingly within the Pleistocene, a trend that is being increasingly recognised in print for other biota. Some caveats about using phylogenetic approaches to estimate ancestral areas are illustrated. Several recommendations are made regarding additional taxa and data sources for understanding the origin and maintenance of biological diversity.
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  • Date Issued: 2010

Aspects of the thermal ecology of six species of carcass beetles in South Africa

  • Authors: Midgley, John Mark
  • Date: 2008
  • Subjects: Forensic entomology , Diptera -- South Africa , Beetles -- South Africa , Burying beetles , Burying beetles -- South Africa , Beetles -- Effect of temperature on
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5643 , http://hdl.handle.net/10962/d1005325 , Forensic entomology , Diptera -- South Africa , Beetles -- South Africa , Burying beetles , Burying beetles -- South Africa , Beetles -- Effect of temperature on
  • Description: The forensic application of entomology is well known, but it is generally a field which concentrates on Diptera. Many Coleoptera also have forensic application, but are generally neglected by forensic entomology researchers. Necrophilic Coleoptera are diverse and therefore have application in estimating Post-Mortem Interval (PMI) by community composition, but they are also valuable in estimating PMI by development. In addition, Coleoptera are more common in stored product cases. Six species of forensically important Coleoptera were studied, three from the family Dermestidae (Dermestes haemorrhoidalis, D. maculatus and D. peruvianus) and three from the family Silphidae (Silpha punctulata, Thanatophilus micans and T. mutilatus). The effect of killing method and storage time on larval length was investigated in T. micans. Coleopteran larvae were shown not to behave in the same way as dipteran larvae. In contrast to dipteran larvae, it is recommended that coleopteran larvae be killed using ethanol. A development model is presented for T. micans. This represents the first statistically robust development model for forensically important Coleoptera, and the first development model for forensically important Silphidae. The model offers a method of estimating PMI which can be used once Diptera are no longer present on a corpse. Upper lethal temperature limits for four species of carcass beetle were determined. A comparison between species shows distinct differentiation between families and species. This differentiation accounts for microhabitat differences which these species show on carcasses. Bioclimatic models for the six species showed contrasting distributions, with both widespread and localised species. These models allow forensic investigators to assess whether the absence of a species from a corpse is forensically significant, or a result of the species distributions. Moisture-related variables were shown to be more important in predicting species distributions than temperature at a regional scale. Forensic entomology standards can be adjusted based on the findings of this study. Length was again shown to be an inferior measurement of larval age. Coleopteran development has been shown to be useful, and should be given greater consideration in future work. T. micans has been shown to be capable of locating and ovipositing on carcasses promptly after death, making it a good forensic indicator. Further work is needed for the full potential of necrophilic Coleoptera to be realised.
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  • Date Issued: 2008

Effects of temperature on the development, behaviour and geography of blowflies in a forensic context

  • Authors: Richards, Cameron Spencer
  • Date: 2008
  • Subjects: Blowflies Blowflies -- South Africa Diptera -- South Africa Insects -- Development Insects -- Behavior Forensic entomology
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:5683 , http://hdl.handle.net/10962/d1005369
  • Description: The development of immature insects is commonly employed in forensic investigations to estimate time of death, or postmortem interval (PMI), of a corpse on which they are feeding. The bulk of this thesis focuses on factors influencing the accuracy of developmental data, and exploring how and why developmental data differ between studies involving the same species, and between different species. Because carrion feeding insects are ectotherms, temperature may be expected to significantly influence their behaviour, development and distribution, and the remainder of the thesis therefore focuses on the thermal biology and geographical distribution of seven forensically important blowflies. The species include Chrysomya albiceps, C. putoria, C. chloropyga, C. megacephala, C. marginalis, C. inclinata and Calliphora croceipalpis. A robust experimental design for estimating developmental models is outlined and tested. It is recommended that forensic entomologists should involve at least six constant temperatures, starting at about 7°C above the relevant developmental zero (D0) and going to about 10°C above the upper critical temperature, and a temporal sampling interval with a relative precision of about 10%. Using this design, focused experiments consistently provided the most reliable developmental data, while data pooled from different studies yielded inconsistent results. Similarly, developmental data from closely related species differed significantly, and surprisingly so did developmental data from different populations of the same species. Possible explanations for the latter lay in the different methods of data collection but only temporal sampling resolution had a direct influence on the accuracy of developmental data. Consequently, disparities in such data were primarily ascribed to genetic differences and phenotypic plasticity. Comparisons between numerous thermal thresholds of larvae, pupae and adults support this conclusion and suggest a phylogenetic component to the thermal biology of blowflies. Further comparisons were made between these temperature thresholds and the distributions of blowfly species present on two rhinoceros carcasses. These comparisons suggest that blowfly larvae with high upper lethal temperature thresholds dominate in interspecific competition in favorable thermal environments by raising maggot mass temperature above the thresholds of other carrion-feeding blowflies, through maggot-generated heat. Bioclimatic modeling using maximum entropy analysis provided a successful means of predicting whether a species is likely to occur in an area, and whether it would therefore be expected in a local carcass community. It also showed that temperature was less important than moisture in shaping the geographical distribution of African carrion blowflies. Based on these results, several recommendations are made for the practice of forensic entomology.
  • Full Text:
  • Date Issued: 2008

Spermiogenesis, sperm ultrastructure and reproductive tract morphology in cicadas implications for systematic relationships

  • Authors: Chawanji, Abraham Simbarashe
  • Date: 2007
  • Subjects: Cicadas Cicadas -- Reproduction Spermiogenesis in animals
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:5770 , http://hdl.handle.net/10962/d1005458
  • Description: Sperm structure in five species of cicadine cicadas (Albanycada albigera, Azanicada zuluensis, Platypleura capensis, P. hirtipennis and Pycna semiclara) and five species of cicadettine cicadas (Melampsalta leucoptera, Quintilia walkeri, Stagira simplex, Xosopsaltria thunbergi and Monomatapa matoposa) was investigated by light and electron microscopy. In addition, spermiogenesis in cicadas was described; the information was derived from two cicadettines (Diceroprocta biconica and M. matoposa) and three cicadines (Kongota punctigera, P. capensis and P. semiclara). Mature spermatozoa of all species investigated are elongate and filiform, consisting of three distinct regions: the head (acrosome and nucleus), mid-piece and tail. All species produce more than one discrete length of nucleated, motile sperm, a form of sperm polymorphism termed polymegaly. Polymegaly is expressed in three ways; sperm have uni-, bi- or trimodal nucleus and tail lengths. Besides the differences in length, there are also notable differences in the size of nuclei. The anterior parts of sperm heads are embedded in an elongate homogenous matrix forming spermatodesmata. The conical acrosome is deeply invaginated posteriorly, and sits on top of the nucleus. The acrosomal contents are differentiated internally with a tubular substructure and a subacrosomal space. The anterior of the nucleus intrudes into the posterior section of the subacrosomal space. Anteriorly the acrosome is laterally flattened; posteriorly it extends as two tubular processes on either side of the nucleus that gradually decrease in diameter. The homogenously electron-dense nucleus is pointed anteriorly and is generally cylindrical, although posteriorly there is a lateral invagination that extends part-way along the nucleus. This invagination houses fine granular material of the putative centriolar adjunct which does not form in close proximity to the centriole and hence may not be a true centriolar adjunct. The lamellate disposition of the centriolar adjunct material within the sperm-midpiece of cicadettine cicadas is distinct, and separates these cicadas from their cicadine counterparts in which the centriolar adjunct material is non-lamellate. Vesicle-like elements that are associated with both the posterior nucleus and the centriolar adjunct are also found within the invagination. Immediately posterior of and adjoining the centriolar adjunct is a pair of mitochondrial derivatives that are elongated and extend for almost the entire length of the tail. Except for size the architecture of short and long spermatozoa is generally similar in all species. The absence of accessory bodies in cicada sperm suggests that within the Cicadomorpha, the families Cicadidae and Cercopidae are closely related. Only long nuclei were observed in the fertilized eggs of A. zuluensis indicating that sperm with long nuclei might be favoured for fertilization. Spermiogenesis involves: (a) development of the acrosome from a proacrosomal granule; (b) development of the nucleus, characterized by elongation and streamlining with a simultaneous condensation of chromatin; (c) development of the axoneme from the centriole; (d) amalgamation of individual small mitochondria to form elongated mitochondrial derivatives in which cristae are arranged into regularly spaced lamellae; and (f) elimination of cytoplasm. The presence of a manchette, a transient microtubular organelle, which surrounds the acrosome, nucleus and mitochondrial derivatives, is a characteristic feature of spermiogenesis. The gross morphology of the reproductive tract in both male and female cicadas exhibits an organization similar to that in most oviparous insects. The non-functional spermatheca is the only exceptional feature in the female reproductive tract. Its role has been taken over by the common oviduct which, subsequently, has become modified into a swollen, differentiated structure with a dual role of receiving oocytes from the paired ovaries and storage of spermatozoa. Testis mass varies between cicada species; this variation might be linked to the intensity of sperm competition which has been found to be positively correlated with relative investment in spermatogenesis. Based on the preliminary findings of this study, K. punctigera, with its larger testis relative to body size, would be the ideal candidate to show the greatest levels of sperm competition. Accessory glands in both male and female A. zuluensis, D. biconica, P. hirtipennis and O. quadraticollis are very long; this character might be of phylogenetic significance. Despite being notoriously refractory spermiocladistics is potentially valuable in systematic and phylogenic studies of cicadas, especially at the subfamily level.
  • Full Text:
  • Date Issued: 2007

The role of ants in structuring insect communities on the canopies of senegalia drepanolobium near Laikipia, Kenya

  • Authors: Kuria, Simon Kamande
  • Date: 2007
  • Subjects: Ants -- Kenya Ants -- Behavior Insect societies -- Kenya Forest canopy ecology -- Kenya
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:5758 , http://hdl.handle.net/10962/d1005446
  • Description: In the black cotton ecosystem of Laikipia, Kenya, four symbiotic ants coexist at a fine spatial scale on canopies of Senegalia drepanolobium. They exhibit different aggressive behaviours and modify their tree canopies differently. These diverse behaviours were expected to affect the associated canopy arthropod communities. At the Kenya long-term exclosure experiment (KLEE) and its immediate environs at Mpala Research Centre, Laikipia, the insect communities coexisting with each of the four ant species were characterized, and their response to different vertebrate herbivory. Other ant species inhabiting the tree canopies or the ground were surveyed too. Pitfall trapping was used in sampling terrestrial ants, while beating and mist-blowing were used in collecting arboreal insects. Different sampling methods had varying efficacies, revealing the importance of using several methods. There are at least sixteen ant species in this ecosystem, all occurring on the ground, but only ten species on the trees. Terrestrial ant communities in this ecosystem cannot be used as indicators of grazing pressure for range management. A total of 10,145 individual insects were collected from the tree canopies, comprising of 117 species from seven orders and 25 families, forming a complex community of species interacting at different levels. Symbiotic ant species had a significant effect on insect community structure and composition. Crematogaster sjostedti was associated with a community that was significantly different from the other ant species. There was no significant effect of vertebrate feeding pressure on the canopy insect community, but there was an interaction effect between ant species and treatments. Significant differences between ant species mostly occurred on treatment plots where only cows were allowed to graze. One or more of the ant species may be a keystone species in this ecosystem even though experimental manipulations failed to confirm earlier findings. It was concluded that the one-year period during which experimental manipulations were carried out was not long enough to reflect takeover effects on the insect community. The four symbiotic ant species colonizing S. drepanolobium comprises of two guilds, the hemipteran-tending ants (C. sjostedti and Crematogaster mimosae) and non-tending ants (Crematogaster nigriceps and Tetraponera penzigi). Communities associated with these guilds were found to be significantly different in all four diversity indices. The black cotton ecosystem is species-poor compared to other ecosystem such as forests. The number of insect species that colonizes S. drepanolobium and coexists with acacia-ants forms a large proportion of the invertebrate community. Therefore, this ecosystem should be conserved to safeguard this invertebrate community. This will also give scientists a chance to establish how the various insect species coexist with symbiotic ants on tree canopies.
  • Full Text:
  • Date Issued: 2007

Establishment and impact of the sap-sucking mirid, Falconia intermedia (Distant) (Hemiptera: Miridae) on Lantana camara (Verbenaceae) varieties in the Eastern Cape Province, South Africa

  • Authors: Heshula, Unathi-Nkosi Lelethu Peter
  • Date: 2005
  • Subjects: Lantana camara -- South Africa -- Eastern Cape , Biological pest control agents -- South Africa -- Eastern Cape , Hemiptera -- South Africa -- Eastern Cape , Miridae -- South Africa -- Eastern Cape
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5832 , http://hdl.handle.net/10962/d1008085
  • Description: The biological control of the weedy complex Lantana camara (L.) (Verbenaceae) has been ongoing in South Africa for over 40 years. Despite this, the weed is still not under sufficient control and continues to invade new territories in the country. The biological control programme needs to be bolstered with releases of new and potentially damaging biological control agents. A promising biological control agent endemic to Central America, Falconia intermedia (Distant) (Hemiptera: Miridae), was imported into quarantine from Jamaica in 1994. This agent was released on sites in KwaZulu-Natal and Limpopo provinces of South Africa in 1999. Even though it initially established and damaged L. camara, populations died out at most of the release sites. As varietal difference and adverse climate have been cited as the reason for non-establishment and ineffective control in L. camara biocontrol programmes worldwide, this study attempts to investigate the role that these two factors play in this weed herbivore relationship. Laboratory no-choice trials were conducted to determine the varietal performance of F intermedia, among five Eastern Cape varieties of the weed from East London, Whitney Farm, Heather Glen Farm, Port Alfred and Lyndhurst Farm, and a variety from the Plant Protection Research Institute (PPRI), Pretoria. However, there were differences in performance as the adult mirids performed better on white-pink varieties from Whitney Farm and Heather Glen Farm. To test varietal preference in field conditions, field releases of F intermedia were also made at East London, Whitney Farm, Heather Glen Farm, Port Alfred and Lyndhurst Farm. Post release evaluations were conducted monthly for two years (2002 and 2003). The insect established at East London and Whitney Farm, both of which have white-pink varieties. Insect populations quickly died out at the Lyndhurst Farm and Port Alfred sites, which have dark pink varieties. It is suggested that field conditions may have resulted in poor plant quality and led indirectly to varietal preference, and to non-establishment at these two sites. With the onset of cooler weather, populations disappeared at Heather Glen Farm. This suggested that F. intermedia was suitable for release in more subtropical areas within South Africa where climatic conditions would be suitable throughout the year. The mirid performed well at Whitney Farm, resulting in significant reduction in plant growth parameters such as height and percentage cover, and increasing the cover of other flora growing beneath L. camara plants. Finally, ways to improve the efficacy of this agent are considered in an effort towards better control of L. camara in South Africa.
  • Full Text:
  • Date Issued: 2005

Impacts of wildlife and cattle grazing on spider (araneae) biodiversity in a highland savanna ecosystem, in Laikipia, Central Kenya

  • Authors: Warui, Charles Mwaura
  • Date: 2005
  • Subjects: Spiders -- Kenya Environmental monitoring -- Kenya Savanna ecology -- Kenya Biodiversity -- Kenya Species diversity -- Kenya Wildlife management -- Kenya Herbivores -- Ecology -- Kenya
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: vital:5712 , http://hdl.handle.net/10962/d1005398
  • Description: Spiders were sampled at Mpala Research Centre, Laikipia, Kenya by pitfall-trapping and sweep-netting from May 2001 to July 2002, at a Kenyan Long-term Exclosure Experiment. The aim was to establish species composition, checklist and examine spider responses to disturbances caused by cattle, megaherbivores (giraffe and elephants) and mesoherbivores (other ungulates) by looking at three levels of resolution, namely the overall community, guilds and individual species. This is the first controlled replicated experimental study on the effects on invertebrates (spiders) by different land uses (access by large herbivores). A total of 10,487 individuals from 132 species belonging to 30 families were recorded. The family Salticidae had the highest number of species (24), followed by Gnaphosidae (20), Araneidae and Lycosidae (15 each), Theridiidae and Thomisidae (8 each) and Zodariidae (4). Most of the other families had fewer than 4 species. Throughout the study period, species not previously sampled emerged after rainfall peaks. Exclosure treatments affected plant cover, spider diversity and total species mainly through the effects of cattle, whose presence significantly reduced relative vegetation cover. An increase in vegetation cover significantly increased the diversity, total species and species evenness of the overall spider community (total samples data set). Megaherbivores and mesoherbivores had no effects on overall spider diversity. Relative vegetation cover explained approximately 20-30% of variation in community diversity, species richness and species evenness. At the guild level of resolution, the exclosure treatments had no significant effects on diversity, species richness and species evenness of web builders, plant wanderers and ground wanderers. Plant wanderers were significantly and positively correlated with relative vegetation cover, which explained 17% of variation in their diversity. Six individual species responded strongly and in contrasting ways to the same environmental variables, indicating that this level was more sensitive to environmental changes than guilds or the overall spider community. Spider diversity, relative vegetation cover and rainfall varied at a temporal scale of months and not at a spatial scale of hundreds of metres. Only species diversity and species richness from sweep-netting samples and total species from pitfall-trapping varied significantly at a spatial scale of hundreds of metres. Ordination analysis revealed that sweep-netting samples were a better indicator of grazing impacts than pitfalltrapping or combined samples and grouped to reflect cattle grazing, non-cattle grazing and to a small extent the control treatments. Other ordination analyses showed that only samples from sweep-netting and not from pitfall-trapping, were spatially partitioned at a scale of hundreds of metres. This study concludes that the spider fauna of black cotton soil habitats is rich and useful for environmental monitoring and that monitoring of several individual species as indicator of grazing impacts in savanna could be useful and relatively easy.
  • Full Text:
  • Date Issued: 2005

Studies on parasitoids of the diamondback moth, Plutella xylostella (L.) (Lepidoptera: Plutellidae), in South Africa

  • Authors: Nofemela, Sicelo Robert
  • Date: 2004
  • Subjects: Plutellidae -- South Africa , Plutellidae -- Biological control , Plutellidae -- Parasites , Parasitoids
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5780 , http://hdl.handle.net/10962/d1005468 , Plutellidae -- South Africa , Plutellidae -- Biological control , Plutellidae -- Parasites , Parasitoids
  • Description: The diamondback moth, Plutella xylostella (L.) (Lepidoptera: Plutellidae), is a major pest of Brassica crops in many parts of the world. Because of its ability to develop resistance to virtually all major groups of insecticides, including Bacillus thuringiensis Berliner (Bt), much attention has therefore been given to biological control using parasitoids. South Africa has an abundance of parasitoids attacking this pest. Cotesia plutellae (Kurdjumov) (Hymenoptera: Braconidae) is the most abundant larval parasitoid of P. xylostella in South Africa. In East Africa, its role in biological control of P. xylostella is insignificant, and the most abundant parasitoid there is Diadegma mollipla (Holmgren) (Hymenoptera: Ichneumonidae), a larvalpupal parasitoid. In South Africa, however, D. mollipla is out-competed by C. plutellae. Total parasitism of P. xylostella in East Africa rarely exceeds 15%, therefore there is a need to introduce more effective and heat-tolerant parasitoids of P. xylostella to that region. This study was therefore initiated to examine the potential of C. plutellae and D. mollipla as biological control agents by studying certain aspects of their biology in the laboratory, as well as the suitability of C. plutellae for introduction into East Africa. Biological aspects studied were: (i) host instar preference, fecundity, and searching efficiency of C. plutellae and D. mollipla at different host and parasitoid densities; (ii) effects of temperature on parasitism of P. xylostella by C. plutellae and D. mollipla, and on their rates of development and emergence. In addition, the role of parasitoids in controlling P. xylostella on unsprayed cabbage plots was investigated. Both C. plutellae and D. mollipla preferred to attack second and third instar hosts than fourth instars in choice and no-choice tests. However, D. mollipla attacked more fourth instar hosts than C. plutellae. Cotesia plutellae laid mainly female eggs in second and third instar hosts than in fourth instars, whereas D. mollipla laid more female eggs in fourth instar hosts than in second and third instar hosts. Diadegma mollipla was more fecund [82.57 ± 32.87, (mean ± s.d.) than C. plutellae (42.13 ± 12.2), and was long lived (7.13 ± 3.69 days) compared to the latter (5.23 ± 2.7 days). An increase in host density resulted in the reduction in the area of discovery (a) and the killing power (K) for both parasitoids. No significant differences were detected between the searching efficiency (t = -1.42NS, d.f. = 48, P < 0.001) of the two parasitoids. An increase in parasitoid density also resulted in a decline in searching efficiency, but not the killing power, of both parasitoids. Cotesia plutellae completed development at all temperatures tested (21-33°C), whereas D. mollipla completed development at temperatures from 18-30°C, and C. plutellae had a lower threshold for development (8.14°C) compared to D. mollipla (10.23°C). At all tested temperatures, the generation time for C. plutellae was shorter compared to D. mollipla. The possible reasons for the dominance of C. plutellae over D. mollipla in the field are: shorter generation time, high production of female progeny in younger hosts, low interference among searching females, and relatively wide thermal tolerance. The role of parasitoids in regulating diamondback moth, Plutella xylostella (L.) (Lepidoptera: Plutellidae), populations was studied for two years (February 2000-January 2002) on unsprayed cabbage fields at Brits, North West Province, South Africa. Cabbage seedlings were transplanted in three consecutive times each year. Cabbage infestations by P. xylostella larvae and pupae, and their parasitoids, were monitored at weekly intervals. The flight activity of P. xylostella male moths was monitored using sex-pheromone traps. Trap catches indicated that the moths were active throughout the year. The flight activity of the moths corresponded with infestations on the crop. Trap catches and infestation levels were generally low from December to August and high from September to November. Eight hymenopteran parasitoids were reared: the larval parasitoids Cotesia plutellae (Kurdjumov) (Braconidae) and Apanteles halfordi (Ullyett) (Braconidae); the larval-pupal parasitoids Oomyzus sokolowskii (Kurdjumov) (Eulophidae) and Diadegma mollipla (Holmgren)(Ichneumonidae); the pupal parasitoid Diadromus collaris (Gravenhorst) (Ichneumonidae); and the hyperparasitoids Eurytoma sp. (Eurytomidae), Mesochorus sp. (Ichneumonidae), and Pteromalus sp. (Pteromalidae). Cotesia plutellae was the most abundant parasitoid of P. xylostella followed by O. sokolowskii, D. collaris, A. halfordi and D. mollipla. Parasitism of P. xylostella larvae was high reaching 100% on several occasions during late spring to end of autumn (November-May) each year. Parasitism was lower (<50%) in winter and early spring (June-September). Apanteles halfordi was absent in winter but re-appeared in spring. Parasitism of P. xylostella pupae by D. collaris was high only during spring (September-October). Hyperparasitism was generally low except when primary parasitoids were abundant in spring (September-November) and summer (December-February) when up to 25% of P. xylostella larvae and C. plutellae cocoons yielded hyperparasitoids. The role of other biotic and abiotic mortality factors on the population dynamics of P. xylostella is discussed.
  • Full Text:
  • Date Issued: 2004

Applied studies of some Southern African blowflies (Diptera: Calliphoridae) of forensic importance

  • Authors: Lunt, Nicola
  • Date: 2003
  • Subjects: Diptera -- South Africa , Blowflies -- South Africa , Forensic entomology
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5803 , http://hdl.handle.net/10962/d1006202 , Diptera -- South Africa , Blowflies -- South Africa , Forensic entomology
  • Description: Three major aspects of blowfly (Diptera: Calliphoridae) research were the focus of this study. Firstly, the phylogenetic relationships of 40 oestroid species from a variety of geographical localities were investigated using Cytochrome Oxidase b subunit I (COl) gene sequences. Maximum parsimony (MP) and Jukes-Cantor neighbor-joining (NJ) analyses both extracted a paraphyletic Calliphoridae, with the Calliphorinae-Luciliinae clade being sister to the Sarcophagidae. Short branch lengths within Chrysomya indicate a recent rapid radiation of this genus. Phormia and Protophormia either formed a sister clade to Chrysomya, or were embedded in this genus. Tree topologies were comparable between MP and NJ trees, but the positions of some genera were ambiguous. Secondly, developmental parameters and behaviour were investigated for four southern African species of forensically important blowflies viz. Chrysomya chloropyga, C. putoria, C. megacephala and Lucilia sericata, and ad hoc observations were made for Calliphora croceipalpis, Chrysomya marginalis and the predatory C. albiceps. Choice of oviposition substrate differed between species, mirroring substrate preferences in the field. Sexual dimorphism and dwarfism within a cohort complicated ageing maggots using size, but the use of developmental events (e.g. ecdysis) allowed ages to be determined unambiguously. Separate species status was supported for the previously synonymised C. chloropyga and C. putoria, by differences in maggot behaviour, larval growth rates and temperature optima. The proportion of total development time assigned to each larval instar and pupariation was variable among temperatures, but similar between congeneric species. Thirdly, since a negative linear relationship was found to occur between the developmental constant (K) and developmental zero (D₀) for both Calliphoridae and Sarcophagidae, the potential for predicting physiological parameters of unstudied taxa was investigated. Species and genera of Palaearctic origin generally had high K's and low D₀'s, and the reverse was true for the tropical taxa. It was found that both K and D₀ can be estimated for "unknown" taxa using the Felsenstein's Independent Contrasts (FIC) method of PDTree (Garland et al. 200 I), provided that branch lengths are relatively short and the phylogenetic position of the estimated taxon is unambiguous.
  • Full Text:
  • Date Issued: 2003

The structure of ant communities and their impact on soil-pupating pests in citrus orchards in the Grahamstown area of the Eastern Cape

  • Authors: Bownes, Angela
  • Date: 2003
  • Subjects: Ants -- South Africa -- Eastern Cape , Pests -- Control -- South Africa , Homoptera -- Control -- South Africa -- Eastern Cape , Citrus -- Diseases and pests -- South Africa -- Eastern Cape
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5775 , http://hdl.handle.net/10962/d1005463 , Ants -- South Africa -- Eastern Cape , Pests -- Control -- South Africa , Homoptera -- Control -- South Africa -- Eastern Cape , Citrus -- Diseases and pests -- South Africa -- Eastern Cape
  • Description: Two ant species, Pheidole megacephala (Fabricius) and Anoplolepis custodiens (Smith) reach pest status in citrus orchards through precipitating outbreaks of homopterous pests. However, predacious ants, including these two ant species, play an important role in pest suppression in agroecosystems and are therefore beneficial to these systems. If A. custodiens and P. megacephala are important natural control agents in citrus, using ant bands to break the mutualism between the ants and the Homoptera as a method of ant control is preferable to poisoning. Ant communities were sampled by pitfall trapping in three experimental subunits of 2-, 4-, 15- and 30-year-old citrus orchards, in the Grahamstown area of the Eastern Cape. In one subunit in each orchard, populations of P. megacephala and A. custodiens were suppressed by poison applications. In a second subunit, trees were banded with trunk barriers so that ants were prevented from foraging in the trees and a third subunit served as the untreated control. Bait pupae of bollworm, false codling moth and fruit fly were planted in bait trays in all of the subunits to investigate predation on these citrus pests in the relative absence of predacious ants and where they were excluded from the trees. Pheidole megacephala dominated exclusively in all of the plots. Community composition did not change dramatically with increasing age of the trees, but species diversity and species abundance did. Rank-abundance curves showed that community diversity was highest in the 2-year-old plots and lowest in the 30-year-old plots. The Simpson and Shannon-Wiener diversity indices and their evenness measures indicated that diversity and equitability were highest in the poisoned subunits and lowest in the banded subunits. Principle component analysis revealed that the poisoned subunits were similar and distinct in species composition, that there was significant monthly variation in species composition and that community stability increases with an increase in orchard age. The presence of P. megacephala was significantly negatively correlated (rs = -0.293; p < 0.001) with pest pupal survival. Pupal survival was significantly higher for bollworm (p < 0.001), FCM (p < 0.001) and fruit fly (p < 0.001) in the poisoned subunits, than in the banded and control subunits. There was a general trend for survivorship to increase with an increase in the age of the trees. A significant difference (p < 0.001) was found between the months in which the trials were carried out. Pupal survival was significantly lower (p < 0.001) for FCM than for bollworm and fruit fly. In citrus orchards, ant communities are organised by ecological processes and interactions and are influenced by methods of ant control. Ant bands are preferable to poisoning as a method of ant control, so that beneficial species are left on the ground to prey on pests that pupate in the soil. Maintaining high ant species diversity in citrus orchards would be beneficial as predation on the pupae was more effective where ant species diversity was higher.
  • Full Text:
  • Date Issued: 2003

Diamondback Moth, Plutella xylostella (L.), (Lepidoptera: Plutellidae ), and Other Insects of Canola, Brassica napus L., in Gauteng Province, South Africa

  • Authors: Mosiane, M S
  • Date: 2002
  • Subjects: Plutellidae , Plutellidae -- South Africa -- Gauteng , Rape (Plant) -- South Africa -- Gauteng , Canola , Plant parasites
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:5937 , http://hdl.handle.net/10962/d1018250
  • Description: Canola, Brassics napus L. is a relatively new crop in South Africa. Insect pests have not yet been a major problem, but the notorious brassica specialist, diamondback moth (DBM), Plutella xylostella (L.) (Plutellidae) is establishing itself as a serious pest of this crop. DBM is the most important insect pest of plants from the family Brassicaceae throughout the world. It has developed resistance to all chemical pesticides used against it in the field and to toxins of the bacterium Bacillus thuringiensis. The pest status of DBM in South Africa is lower than in other countries with similar climates. However, due to indiscriminate use of pesticides, local populations of DBM are showing signs of resistance. An initial survey has indicated that in addition to DBM, canola is also attacked by aphids, Myzus persicae (Sulzer), Brevicoryne brassicae (L.), Lipaphis e1ysimi (Kaltenbach), (Aphiade), thrips, Thrips tabaci (Lindeman) and other pests mostly brassica specialists. The study was initiated to determine the composition of the community of insects found on canola, the seasonal phenology of DBM populations in canola, and the composition, relative abundance and seasonality of its parasitoids. Monitoring of the insects was carried out at weekly intervals for three years at Rietondale and Bapsfontein in Gauteng province of South Africa. Berlese funnels have been found to be useful in extracting insects from plants, and were used to indicate the presence ofDBM larvae and other insects found on canola. Adults of DBM were monitored with synthetic pheromone traps; larval and pupal populations were monitored by scouting canola plants. Samples of larvae, pupae and parasitoid cocoons were brought into the laboratory. Parasitoids that emerged were identified and their incidence recorded. Monolepta cf bifasciata (Chrysomelidae) and Listroderes costrirostris (Schoener) (Curculionidae) were the most abundant of the coleopteran pests. (DBM) and Heliothis armigera (H.) (Noctuidae) were most abundant lepidopteran pests of Canola. There was a high proportion of first and second instar larvae as indicated by the results of the Berlese funnels as compared to visual scouting in Bapsfontein. From May to August the infestation level of DBM was high, reaching the maximum of 0.25 larvae per plant in June 1996, then declined and remained low for the rest of the season in Rietondale. From September to December for all three years of the study, the population levels Of DBM were high, reaching a maximum of 9.6larvae per plant in September 1997, and remained low from January to August in Bapsfontein. The number of adult moths per trap per week ranged from 0 to 91 in Rietondale, peaking in January 1996 and September 1997. There was no correlation between infestation levels and the pheromone trap catches. In contrast to Rietondale, there was a high correlation between pheromone trap catches and subsequent larval infestations at Bapsfontein. Although DBM infestation levels were generally low, parasitism levels often reached 100% caused by a complex of parasitoids. During the period of study, the following hymenopteran parasitoids were recorded: Cotesia plutellae (Kurdjumov) and Apanteles eriophyes (Nixon), Braconidae), both larval parasitoids, Diadegma mollipla (Holmgren) (Ichneumonidae), and Oomyzus sokolowskii (Kurdjumov) (Eulophidae), larval-pupal parasitoids, Diadromus collaris (Gravenhorst) (Ichneumonidae) pupal parasitoid, and the hyperparasitoids Mesochorus sp. (Ichneumonidae) and Pteromalus sp. (Pteromalidae). Cotesia plutellae was the most abundant parasitoid occurring throughout the year..
  • Full Text:
  • Date Issued: 2002

A predictive biogeography of selected alien plant invaders in South Africa

  • Authors: Youthed, Jennifer Gay
  • Date: 1997
  • Subjects: Alien plants -- South Africa , Biogeography -- South Africa , Acacia -- South Africa , Acacia mearnsii -- South Africa , Opuntia ficus-indica -- South Africa , Solanum -- South Africa
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: vital:4846 , http://hdl.handle.net/10962/d1005522 , Alien plants -- South Africa , Biogeography -- South Africa , Acacia -- South Africa , Acacia mearnsii -- South Africa , Opuntia ficus-indica -- South Africa , Solanum -- South Africa
  • Description: Five techniques were used to predict the potential biogeography of the four alien plant species, Acacia longifolia, Acacia mearnsii, Opuntia ficus-indica and Solanum sisymbrifolium. Prediction was based on five environmental factors, median annual rainfall, co-efficient of variation for rainfall, mean monthly maximum temperature for January, mean monthly minimum temperature for July and elevation. A geographical information system was used to manage the data and produce the predictive maps. The models were constructed with presence and absence data and then validated by means of an independent data set and chisquared tests. Of the five models used, three (the range, principal components analysis and discriminant function analysis) were linear while the other two (artificial neural networks and fuzzy logic) were non-linear. The two non-linear techniques were chosen as a plant's response to its environment is commonly assumed to be non-linear. However, these two techniques did not offer significant advantages over the linear methods. The principal components analysis was particularly useful in ascertaining the variables that were important in determining the distribution of each species. Artifacts on the predictive maps were also proved useful for this purpose. The techniques that produced the most statistically accurate validation results were the artificial neural networks (77% correct median prediction rate) and the discriminant function analysis (71% correct median prediction rate) while the techniques that performed the worst were the range and the fuzzy classification. The artificial neural network, discriminant function analysis and principal component analysis techniques all show great potential as predictive distribution models.
  • Full Text:
  • Date Issued: 1997
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