Photophysicochemical and fluorescence quenching studies of tetra-and octa-carboxy substituted silicon and germanium phthalocyanines
- Idowu, Mopelola A I, Nyokong, Tebello
- Authors: Idowu, Mopelola A I , Nyokong, Tebello
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/263500 , vital:53633 , xlink:href="https://doi.org/10.1016/j.jphotochem.2009.02.002"
- Description: Spectral, photophysical and photochemical properties of tetra- and octa-carboxy substituted metallophthalocyanines containing silicon and germanium as central metals ((OH)2GeTCPc, (OH)2SiTCPc, (OH)2GeOCPc and (OH)2SiOCPc) have been studied in dimethylsulfoxide (DMSO) and the trends in triplet, fluorescence, singlet oxygen quantum yields and triplet lifetimes are described for these compounds. The GePc derivatives exhibited high triplet quantum yields (ΦT = 0.79 for (OH)2GeOCPc and 0.82 for (OH)2GeTCPc compared to ΦT = 0.66 for (OH)2SiTCPc and 0.48 for (OH)2SiOCPc) due to the spin–orbit coupling induced by Ge(IV). The triplet lifetimes were higher for MOCPc (τT = 760 μs for (OH)2SiOCPc and 480 μs for (OH)2GeOCPc compared to τT = 210 μs for (OH)2SiTCPc and 260 μs for (OH)2GeTCPc). The fluorescent states of the metallophthalocyanine (MPc) complexes were effectively quenched by benzoquinone (BQ) and the quenching course was found to follow a diffusion-controlled (dynamic) bimolecular mechanism. Theoretical values of bimolecular rate constant for the interaction of the complexes with BQ were determined using the Stokes–Einstein–Smoluchowski model, and values together with the Stern–Volmer quenching constants were used in calculating the fluorescence lifetimes of the complexes.
- Full Text:
- Authors: Idowu, Mopelola A I , Nyokong, Tebello
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/263500 , vital:53633 , xlink:href="https://doi.org/10.1016/j.jphotochem.2009.02.002"
- Description: Spectral, photophysical and photochemical properties of tetra- and octa-carboxy substituted metallophthalocyanines containing silicon and germanium as central metals ((OH)2GeTCPc, (OH)2SiTCPc, (OH)2GeOCPc and (OH)2SiOCPc) have been studied in dimethylsulfoxide (DMSO) and the trends in triplet, fluorescence, singlet oxygen quantum yields and triplet lifetimes are described for these compounds. The GePc derivatives exhibited high triplet quantum yields (ΦT = 0.79 for (OH)2GeOCPc and 0.82 for (OH)2GeTCPc compared to ΦT = 0.66 for (OH)2SiTCPc and 0.48 for (OH)2SiOCPc) due to the spin–orbit coupling induced by Ge(IV). The triplet lifetimes were higher for MOCPc (τT = 760 μs for (OH)2SiOCPc and 480 μs for (OH)2GeOCPc compared to τT = 210 μs for (OH)2SiTCPc and 260 μs for (OH)2GeTCPc). The fluorescent states of the metallophthalocyanine (MPc) complexes were effectively quenched by benzoquinone (BQ) and the quenching course was found to follow a diffusion-controlled (dynamic) bimolecular mechanism. Theoretical values of bimolecular rate constant for the interaction of the complexes with BQ were determined using the Stokes–Einstein–Smoluchowski model, and values together with the Stern–Volmer quenching constants were used in calculating the fluorescence lifetimes of the complexes.
- Full Text:
Photosynthetic and evolutionary determinants of the response of selected C3 and C4 (NADP-ME) grasses to fire
- Authors: Martin, Tarryn
- Date: 2009
- Subjects: Photosynthesis , Carbon -- Metabolism , Grasses -- Adaptation , Plants -- Effect of fires on , Grasses -- Research , Grasses -- Physiology , Grasses -- Evolution , Grasslands -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4211 , http://hdl.handle.net/10962/d1003780 , Photosynthesis , Carbon -- Metabolism , Grasses -- Adaptation , Plants -- Effect of fires on , Grasses -- Research , Grasses -- Physiology , Grasses -- Evolution , Grasslands -- Research
- Description: Species possess characteristics that are considered adapted to burning and these allow them to outcompete species and dominate in fire prone environments. It has therefore been proposed that fire might have played a critical role in the observed expansion of the grasslands, during the late Miocene. The aim of this study was (i) to investigate whether plant response to fire was a result of physiology or (ii) whether it was due to phylogenetic history. This was achieved by doing a pair-wise comparison between Panicoideae (and Panicoideae) and non-Panicoideae (Danthonioideae and Aristidoideae) species. Pre-fire characteristics, that would enhance fire frequency and assist with plant recovery after burning, were compared across phylogenies and photosynthetic type. Post fire plant recovery was then followed in a field and pot comparison which examined the re-growth of the leaf canopy area, leaf mass, above-ground biomass and the cost of this to the below-ground biomass. The pre-fire characteristics showed both a photosynthetic and phylogenetic response. It was found that the species showed a greater canopy death during winter and had a lower moisture content than the species. These characteristics would potentially contribute towards a larger fuel load in the species. However, the comparison of the dead standing biomass at the end of winter and the below-ground biomass, showed a phylogenetic response with the Panicoideae having a proportionally larger dead standing biomass and below-ground biomass than the non-Panicoideae. These results suggest that not only did the Panicoideae have a larger potential fuel load but that they also shunted carbon below-ground, enabling a fast recovery after being burned. The post-fire results were more strongly determined by phylogeny than by photosynthetic type. The Panicoideae recovered faster and more completely than the non-Panicoideae grasses, possibly contributing to their success and expansion under conditions of increased fire frequency. Although recovery of the and Panicoideae were similar, frequently burnt grasslands are dominated by the Panicoideae. Hence, this dominance cannot be explained by differences in their fire responses and may be determined by the post-fire environmental conditions that potentially advantage species possessing the photosynthetic pathway. Panicoideae dominance is limited to mesic environments where fire is the likely driver of grassland expansion while more arid environments are dominated by non-Panicoideae species. Representative species from these non-Panicoid subfamilies showed poor recovery after fire. This suggests that factors other than fire were the likely drivers of these xeric grassland expansions. The ability of these subfamilies, and particularly the species, to cope with drought remains a likely selective mechanism that requires further research.
- Full Text:
- Authors: Martin, Tarryn
- Date: 2009
- Subjects: Photosynthesis , Carbon -- Metabolism , Grasses -- Adaptation , Plants -- Effect of fires on , Grasses -- Research , Grasses -- Physiology , Grasses -- Evolution , Grasslands -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4211 , http://hdl.handle.net/10962/d1003780 , Photosynthesis , Carbon -- Metabolism , Grasses -- Adaptation , Plants -- Effect of fires on , Grasses -- Research , Grasses -- Physiology , Grasses -- Evolution , Grasslands -- Research
- Description: Species possess characteristics that are considered adapted to burning and these allow them to outcompete species and dominate in fire prone environments. It has therefore been proposed that fire might have played a critical role in the observed expansion of the grasslands, during the late Miocene. The aim of this study was (i) to investigate whether plant response to fire was a result of physiology or (ii) whether it was due to phylogenetic history. This was achieved by doing a pair-wise comparison between Panicoideae (and Panicoideae) and non-Panicoideae (Danthonioideae and Aristidoideae) species. Pre-fire characteristics, that would enhance fire frequency and assist with plant recovery after burning, were compared across phylogenies and photosynthetic type. Post fire plant recovery was then followed in a field and pot comparison which examined the re-growth of the leaf canopy area, leaf mass, above-ground biomass and the cost of this to the below-ground biomass. The pre-fire characteristics showed both a photosynthetic and phylogenetic response. It was found that the species showed a greater canopy death during winter and had a lower moisture content than the species. These characteristics would potentially contribute towards a larger fuel load in the species. However, the comparison of the dead standing biomass at the end of winter and the below-ground biomass, showed a phylogenetic response with the Panicoideae having a proportionally larger dead standing biomass and below-ground biomass than the non-Panicoideae. These results suggest that not only did the Panicoideae have a larger potential fuel load but that they also shunted carbon below-ground, enabling a fast recovery after being burned. The post-fire results were more strongly determined by phylogeny than by photosynthetic type. The Panicoideae recovered faster and more completely than the non-Panicoideae grasses, possibly contributing to their success and expansion under conditions of increased fire frequency. Although recovery of the and Panicoideae were similar, frequently burnt grasslands are dominated by the Panicoideae. Hence, this dominance cannot be explained by differences in their fire responses and may be determined by the post-fire environmental conditions that potentially advantage species possessing the photosynthetic pathway. Panicoideae dominance is limited to mesic environments where fire is the likely driver of grassland expansion while more arid environments are dominated by non-Panicoideae species. Representative species from these non-Panicoid subfamilies showed poor recovery after fire. This suggests that factors other than fire were the likely drivers of these xeric grassland expansions. The ability of these subfamilies, and particularly the species, to cope with drought remains a likely selective mechanism that requires further research.
- Full Text:
Phylogeny, biogeography and classification of the snake superfamily Elapoidea a rapid radiation in the late Eocene
- Kelly, Christopher M R, Barker, Nigel P, Villet, Martin H, Broadley, Donald G
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H , Broadley, Donald G
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/442267 , vital:73971 , https://doi.org/10.1111/j.1096-0031.2008.00237.x
- Description: The snake superfamily Elapoidea presents one of the most intransigent problems in systematics of the Caenophidia. Its monophyly is undisputed and several cohesive constituent lineages have been identified (including the diverse and clinically important family Elapidae), but its basal phylogenetic structure is obscure. We investigate phylogenetic relationships and spatial and temporal history of the Elapoidea using 94 caenophidian species and approximately 2300–4300 bases of DNA sequence from one nuclear and four mitochondrial genes. Phylogenetic reconstruction was conducted in a parametric framework using complex models of sequence evolution. We employed Bayesian relaxed clocks and Penalized Likelihood with rate smoothing to date the phylogeny, in conjunction with seven fossil calibration constraints. Elapoid biogeography was investigated using maximum likelihood and maximum parsimony methods. Resolution was poor for early relationships in the Elapoidea and in Elapidae and our results imply rapid basal diversification in both clades, in the late Eocene of Africa (Elapoidea) and the mid‐Oligocene of the Oriental region (Elapidae). We identify the major elapoid and elapid lineages, present a phylogenetic classification system for the superfamily (excluding Elapidae), and combine our phylogenetic, temporal and biogeographic results to provide an account of elapoid evolution in light of current palaeontological data and palaeogeographic models.
- Full Text:
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H , Broadley, Donald G
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/442267 , vital:73971 , https://doi.org/10.1111/j.1096-0031.2008.00237.x
- Description: The snake superfamily Elapoidea presents one of the most intransigent problems in systematics of the Caenophidia. Its monophyly is undisputed and several cohesive constituent lineages have been identified (including the diverse and clinically important family Elapidae), but its basal phylogenetic structure is obscure. We investigate phylogenetic relationships and spatial and temporal history of the Elapoidea using 94 caenophidian species and approximately 2300–4300 bases of DNA sequence from one nuclear and four mitochondrial genes. Phylogenetic reconstruction was conducted in a parametric framework using complex models of sequence evolution. We employed Bayesian relaxed clocks and Penalized Likelihood with rate smoothing to date the phylogeny, in conjunction with seven fossil calibration constraints. Elapoid biogeography was investigated using maximum likelihood and maximum parsimony methods. Resolution was poor for early relationships in the Elapoidea and in Elapidae and our results imply rapid basal diversification in both clades, in the late Eocene of Africa (Elapoidea) and the mid‐Oligocene of the Oriental region (Elapidae). We identify the major elapoid and elapid lineages, present a phylogenetic classification system for the superfamily (excluding Elapidae), and combine our phylogenetic, temporal and biogeographic results to provide an account of elapoid evolution in light of current palaeontological data and palaeogeographic models.
- Full Text:
Phylogeography and epifauna of two intertidal seaweeds on the coast of South Africa
- Authors: Mmonwa, Lucas Kolobe
- Date: 2009
- Subjects: Phylogeography -- South Africa , Marine algae -- South Africa , Red algae -- South Africa , Gelidium -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5738 , http://hdl.handle.net/10962/d1005424 , Phylogeography -- South Africa , Marine algae -- South Africa , Red algae -- South Africa , Gelidium -- South Africa
- Description: Southern African biogeographic boundaries delimit the phylogeographic distribution of some coastal and estuarine invertebrates. This study investigated the impact of these boundaries on the phylogeographic distribution of two intertidal red seaweeds, Gelidium pristoides and Hypnea spicifera using the mitochondrial Cox2-3 spacer and the nuclear ITS1 regions. G. pristoides spores have short distance-dispersal, while long distance-dispersal is more likely in H. spicifera via spores and drifting fertile thallus fragments. Both markers revealed a south-western and south-eastern lineage within G. pristoides but the breaks between lineages do not coincide with any recognised biogeographic limits. The Cox2-3 spacer revealed a boundary between the two lineages at the Alexandria Coastal Dunefield (ACD) and ITS1 at the Gamtoos-Van Stadens Dunefields (GVD) which is approximately 80km west of the ACD. The minor difference between the two markers regarding location of the phylogeographic boundary is probably due to the dating differences between the two dunefields. The ACD as developed currently is superimposed on the ancient dunefields which formed during the Pleistocene, coinciding with the Cox2-3 spacer sequences divergence which dates back 500,000 - 580,000 years. The GVD formed during the Holocene (6,500 - 4,000 years ago), coinciding with the ITS1 sequences divergence which dates 4,224 - 4,928 years ago. Thus, these phylogeographic boundaries probably appeared without the influence of biogeographic boundaries, but rather due to the lack of suitable habitat in the dunefields, coupled with short dispersal-distances of the spores. Analysis of the ITS1 and Cox2-3 spacer regions in H. spicifera revealed that the species is characterized by uniform genetic structure along the coastline. This reflects the species`s potential for long range expansion as it inhabits both the intertidal and subtidal zones; and this presumably leads to high gene flow among populations. The ITS1 sequences showed minimal genetic variation of one substitution between the gametophyte and tetrasporophyte generations within H. spicifera. This suggests the predominance of asexual reproduction, which reduces gene flow and fixes alleles between generations. ANOSIM and Bray-Curtis cluster analyses showed scale-dependant variation in the abundances of epifauna (mainly amphipod, isopod, mollusc and polychaete species) on G. pristoides. At small local (within site) and large (among sites) scales, there were weak and no structure in epifaunal abundances respectively. However, at larger, biogeographic scales, samples from the same biogeographic region tended to be clustered together. Thus, there was a group containing predominantly south coast samples and a group containing east coast samples mixed with the remaining south coast samples. Such scale-dependant variation in epifaunal abundances is probably due to the effects of factors driving species richness at small local (within site) scales (e.g. wave exposure, seaweed biomass) and at larger, biogeographic scales (e.g. surface sea temperature). Moreover, at very small (individual samples) scales; there was no correlation between epifauna composition and genotype of the seaweed. Seaweed samples characterized by distinct ITS1 or Cox2-3 spacer sequences did not show any significant differences in epifaunal composition. Although the distributional pattern of the epifaunal community observed at large biogeographic scale is not clear, it seems to be associated with the biogeographic regions. However, phylogeographic distribution of Gelidium pristoides is not connected to biogeographic regions. Thus, at larger, biogeographic scales, there is no correlation between phylogeographic distribution of G. pristoides and distribution of the associated fauna
- Full Text:
- Authors: Mmonwa, Lucas Kolobe
- Date: 2009
- Subjects: Phylogeography -- South Africa , Marine algae -- South Africa , Red algae -- South Africa , Gelidium -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5738 , http://hdl.handle.net/10962/d1005424 , Phylogeography -- South Africa , Marine algae -- South Africa , Red algae -- South Africa , Gelidium -- South Africa
- Description: Southern African biogeographic boundaries delimit the phylogeographic distribution of some coastal and estuarine invertebrates. This study investigated the impact of these boundaries on the phylogeographic distribution of two intertidal red seaweeds, Gelidium pristoides and Hypnea spicifera using the mitochondrial Cox2-3 spacer and the nuclear ITS1 regions. G. pristoides spores have short distance-dispersal, while long distance-dispersal is more likely in H. spicifera via spores and drifting fertile thallus fragments. Both markers revealed a south-western and south-eastern lineage within G. pristoides but the breaks between lineages do not coincide with any recognised biogeographic limits. The Cox2-3 spacer revealed a boundary between the two lineages at the Alexandria Coastal Dunefield (ACD) and ITS1 at the Gamtoos-Van Stadens Dunefields (GVD) which is approximately 80km west of the ACD. The minor difference between the two markers regarding location of the phylogeographic boundary is probably due to the dating differences between the two dunefields. The ACD as developed currently is superimposed on the ancient dunefields which formed during the Pleistocene, coinciding with the Cox2-3 spacer sequences divergence which dates back 500,000 - 580,000 years. The GVD formed during the Holocene (6,500 - 4,000 years ago), coinciding with the ITS1 sequences divergence which dates 4,224 - 4,928 years ago. Thus, these phylogeographic boundaries probably appeared without the influence of biogeographic boundaries, but rather due to the lack of suitable habitat in the dunefields, coupled with short dispersal-distances of the spores. Analysis of the ITS1 and Cox2-3 spacer regions in H. spicifera revealed that the species is characterized by uniform genetic structure along the coastline. This reflects the species`s potential for long range expansion as it inhabits both the intertidal and subtidal zones; and this presumably leads to high gene flow among populations. The ITS1 sequences showed minimal genetic variation of one substitution between the gametophyte and tetrasporophyte generations within H. spicifera. This suggests the predominance of asexual reproduction, which reduces gene flow and fixes alleles between generations. ANOSIM and Bray-Curtis cluster analyses showed scale-dependant variation in the abundances of epifauna (mainly amphipod, isopod, mollusc and polychaete species) on G. pristoides. At small local (within site) and large (among sites) scales, there were weak and no structure in epifaunal abundances respectively. However, at larger, biogeographic scales, samples from the same biogeographic region tended to be clustered together. Thus, there was a group containing predominantly south coast samples and a group containing east coast samples mixed with the remaining south coast samples. Such scale-dependant variation in epifaunal abundances is probably due to the effects of factors driving species richness at small local (within site) scales (e.g. wave exposure, seaweed biomass) and at larger, biogeographic scales (e.g. surface sea temperature). Moreover, at very small (individual samples) scales; there was no correlation between epifauna composition and genotype of the seaweed. Seaweed samples characterized by distinct ITS1 or Cox2-3 spacer sequences did not show any significant differences in epifaunal composition. Although the distributional pattern of the epifaunal community observed at large biogeographic scale is not clear, it seems to be associated with the biogeographic regions. However, phylogeographic distribution of Gelidium pristoides is not connected to biogeographic regions. Thus, at larger, biogeographic scales, there is no correlation between phylogeographic distribution of G. pristoides and distribution of the associated fauna
- Full Text:
Plankton trophodynamics at the subtropical convergence, Southern Ocean
- Richoux, Nicole B, Froneman, P William
- Authors: Richoux, Nicole B , Froneman, P William
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/457967 , vital:75704 , xlink:href="https://doi.org/10.1093/plankt/fbp054"
- Description: Stable isotope signatures (δ13C, δ15N) in zooplankton tissues and particulate organic matter (POM) were determined to assess regional differences in the trophodynamics of zooplankton communities between 38 and 43°S, where the cool nutrient-rich subantarctic waters of the Southern Ocean meet the warm nutrient-poor subtropical waters of the southwest Indian Ocean at the subtropical convergence (STC). Significantly enriched values of δ15N were noted in populations of all major zooplankton groups inhabiting the warm and saline water mass north of the STC (maximum surface temperature 21°C), including the euphausiids, salps, amphipods, copepods, ostracods, pyrosomes, pteropods and chaetognaths, compared with those in the cool, less saline southern water mass (minimum surface temperature 11°C). Similar patterns of δ15N in POM collected throughout the region suggest that the large changes in zooplankton δ15N values across the frontal region are driven by variations in the phytoplankton communities. The differing trophodynamics in communities north and south of the STC provide compelling evidence of distinct bottom-up effects on planktonic food webs which have important implications in the determination of trophic positions and motility of plankton and higher consumers using δ15N signatures. Although expected, similar latitudinal variations in δ13C signatures were not found.
- Full Text:
- Authors: Richoux, Nicole B , Froneman, P William
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/457967 , vital:75704 , xlink:href="https://doi.org/10.1093/plankt/fbp054"
- Description: Stable isotope signatures (δ13C, δ15N) in zooplankton tissues and particulate organic matter (POM) were determined to assess regional differences in the trophodynamics of zooplankton communities between 38 and 43°S, where the cool nutrient-rich subantarctic waters of the Southern Ocean meet the warm nutrient-poor subtropical waters of the southwest Indian Ocean at the subtropical convergence (STC). Significantly enriched values of δ15N were noted in populations of all major zooplankton groups inhabiting the warm and saline water mass north of the STC (maximum surface temperature 21°C), including the euphausiids, salps, amphipods, copepods, ostracods, pyrosomes, pteropods and chaetognaths, compared with those in the cool, less saline southern water mass (minimum surface temperature 11°C). Similar patterns of δ15N in POM collected throughout the region suggest that the large changes in zooplankton δ15N values across the frontal region are driven by variations in the phytoplankton communities. The differing trophodynamics in communities north and south of the STC provide compelling evidence of distinct bottom-up effects on planktonic food webs which have important implications in the determination of trophic positions and motility of plankton and higher consumers using δ15N signatures. Although expected, similar latitudinal variations in δ13C signatures were not found.
- Full Text:
Plant-Arthropod Interactions in the Early Angiosperm History - Evidence from the Cretaceous of Israel, V. Krassilov, N. Silantieva and Z. Lewy (Part I) and L.N. Anisyutkin, V.G. Grachev, A.G. Ponomarenko, A.P. Rasnitsyn and P. Vrsansky (Part II); V. Krassi-lov and A. Rasnitsyn (Eds.) book review
- Prevec, Rosemary, Bordy, Emese M
- Authors: Prevec, Rosemary , Bordy, Emese M
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/452418 , vital:75127 , https://hdl.handle.net/10520/EJC32792
- Description: This book is a richly illustrated synthesis and development of knowledge on the wide range of plant-insect associations that has been observed in several collections of Cretaceous megafloras from the Negev of Israel.
- Full Text:
- Authors: Prevec, Rosemary , Bordy, Emese M
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/452418 , vital:75127 , https://hdl.handle.net/10520/EJC32792
- Description: This book is a richly illustrated synthesis and development of knowledge on the wide range of plant-insect associations that has been observed in several collections of Cretaceous megafloras from the Negev of Israel.
- Full Text:
Plants for health, life and spirit in Africa : implications for biodiversity and cultural diversity conservation
- Cocks, Michelle L, Dold, Anthony P
- Authors: Cocks, Michelle L , Dold, Anthony P
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6617 , http://hdl.handle.net/10962/d1016225
- Description: [From Introduction] Natural resources are often only perceived as contributing to rural livelihoods through food production and household welfare. There is a growing wealth of information capturing the direct-use values of the environment and consequent recognition of natural resources as being “the poor man's overcoat”. These approaches, however, have failed to fully account for the various ways in which different groups of people make use of, and find value in biodiversity. New developments within the field of anthropology have begun to explore the relationship between biodiversity and human diversity. This view has largely come about because many of the areas of highest biological diversity are inhabited by indigenous and traditional people, providing what the Declaration of Belem (1988) calls an 'inextricable link' between biological and cultural diversity (Posey 1999). The term bio-cultural diversity was introduced by Posey in 1999 to describe the concept denoting this link. , Funding was received from the South Africa-Netherlands Programme on Alternatives in Development (SANPAD) and the International Foundation of Science (IFS)
- Full Text:
- Authors: Cocks, Michelle L , Dold, Anthony P
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6617 , http://hdl.handle.net/10962/d1016225
- Description: [From Introduction] Natural resources are often only perceived as contributing to rural livelihoods through food production and household welfare. There is a growing wealth of information capturing the direct-use values of the environment and consequent recognition of natural resources as being “the poor man's overcoat”. These approaches, however, have failed to fully account for the various ways in which different groups of people make use of, and find value in biodiversity. New developments within the field of anthropology have begun to explore the relationship between biodiversity and human diversity. This view has largely come about because many of the areas of highest biological diversity are inhabited by indigenous and traditional people, providing what the Declaration of Belem (1988) calls an 'inextricable link' between biological and cultural diversity (Posey 1999). The term bio-cultural diversity was introduced by Posey in 1999 to describe the concept denoting this link. , Funding was received from the South Africa-Netherlands Programme on Alternatives in Development (SANPAD) and the International Foundation of Science (IFS)
- Full Text:
Pointfree pseudocompactness revisited
- Authors: Dube, T , Matutu, Phethiwe P
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6781 , http://hdl.handle.net/10962/d1006924
- Description: We give several internal and external characterizations of pseudocompactness in frames which extend (and transcend) analogous characterizations in topological spaces. In the case of internal characterizations we do not make reference (explicitly or implicitly) to the reals.
- Full Text:
- Authors: Dube, T , Matutu, Phethiwe P
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6781 , http://hdl.handle.net/10962/d1006924
- Description: We give several internal and external characterizations of pseudocompactness in frames which extend (and transcend) analogous characterizations in topological spaces. In the case of internal characterizations we do not make reference (explicitly or implicitly) to the reals.
- Full Text:
Pollinators, “mustard oil” volatiles, and fruit production in flowers of the dioecious tree Drypetes natalensis (Putranjivaceae)
- Johnson, Steven D, Griffiths, Megan E, Peter, Craig I, Lawes, Michael J
- Authors: Johnson, Steven D , Griffiths, Megan E , Peter, Craig I , Lawes, Michael J
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6519 , http://hdl.handle.net/10962/d1005948
- Description: The Putranjivaceae is an enigmatic family, notable for being the only lineage outside the Capparales to possess the glucosinolate biochemical pathway, which forms the basis of an induced chemical defense system against herbivores (the “ mustard oil bomb ” ). We investigated the pollination biology and fl oral scent chemistry of Drypetes natalensis (Putranjivaceae), a dioecious subcanopy tree with fl owers borne on the stem (caulifl ory). Flowering male trees were more abundant than female ones and produced about 10-fold more fl owers. Flowers of both sexes produce copious amounts of nectar on disc-like nectaries accessible to short-tongued insects. The main fl ower visitors observed were cetoniid beetles, bees, and vespid wasps. Pollen load analysis indicated that these insects exhibit a high degree of fi delity to D. natalensis fl owers. Insects effectively transfer pollen from male to female plants resulting in about 31% of female fl owers developing fruits with viable seeds. Cetoniid beetles showed signifi cant orientation toward the scent of D. natalensis fl owers in a Y-maze olfactometer. The scents of male and female fl owers are similar in chemical composition and dominated by fatty acid derivatives and isothiocyanates from the glucosinolate pathway. The apparent constitutive emission of isothiocyanates raises interesting new questions about their functional role in flowers.
- Full Text:
- Authors: Johnson, Steven D , Griffiths, Megan E , Peter, Craig I , Lawes, Michael J
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6519 , http://hdl.handle.net/10962/d1005948
- Description: The Putranjivaceae is an enigmatic family, notable for being the only lineage outside the Capparales to possess the glucosinolate biochemical pathway, which forms the basis of an induced chemical defense system against herbivores (the “ mustard oil bomb ” ). We investigated the pollination biology and fl oral scent chemistry of Drypetes natalensis (Putranjivaceae), a dioecious subcanopy tree with fl owers borne on the stem (caulifl ory). Flowering male trees were more abundant than female ones and produced about 10-fold more fl owers. Flowers of both sexes produce copious amounts of nectar on disc-like nectaries accessible to short-tongued insects. The main fl ower visitors observed were cetoniid beetles, bees, and vespid wasps. Pollen load analysis indicated that these insects exhibit a high degree of fi delity to D. natalensis fl owers. Insects effectively transfer pollen from male to female plants resulting in about 31% of female fl owers developing fruits with viable seeds. Cetoniid beetles showed signifi cant orientation toward the scent of D. natalensis fl owers in a Y-maze olfactometer. The scents of male and female fl owers are similar in chemical composition and dominated by fatty acid derivatives and isothiocyanates from the glucosinolate pathway. The apparent constitutive emission of isothiocyanates raises interesting new questions about their functional role in flowers.
- Full Text:
Polymers, catalysts and nanostructures a hybrid approach to biomolecule detection
- Authors: Frith, Kelly-Anne
- Date: 2009
- Subjects: Polymers , Nanostructured materials , Biomolecules , Tryptophan , Melatonin , Electrodes , Electrochemistry , Tryptophan oxygenase
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3980 , http://hdl.handle.net/10962/d1004039 , Polymers , Nanostructured materials , Biomolecules , Tryptophan , Melatonin , Electrodes , Electrochemistry , Tryptophan oxygenase
- Description: The main goals in electroanalytical sensing are towards improved sensitivity and selectivity, or specificity, of an analyte. There are several approaches to achieving these goals with the main approach being modification of an electrode surface with synthetic or natural catalysts (enzymes), polymers and also utilisation of nanostructured materials. At present, there is a strong movement towards hybrid sensing which couple different properties of two or more surface modification approaches. In this thesis, a range of these surface modifications were explored for analysis and detection of two main analytes: the amino acid, tryptophan (Trp); and, the neurotransmitter, dopamine (DA). Specifically, this thesis aimed to utilise these methods to enhance the sensitivity and selectivity for Trp over an interferent, the indoleamine, melatonin (Mel); and, DA over the vitamin, ascorbic acid (AA). For Trp detection, immobilisation of an enzyme, Tryptophanase (Trpase) resulted in poor selectivity for the analyte. However, enhanced sensitivity and selectivity was achieved through pH manipulation of the electrolyte medium at a Nafion®-modified electrode surface for both Trp and Mel. At pH 3.0, the Mel and Trp anodic peak potentials were sufficiently resolved allowing for an LOD of 1.60 and 1.62 nM,respectively, and permitting the accurate analysis of Trp in a dietary supplement containing Mel. Multi-walled carbon nanotubes (MWCNTs) suspended in Nafion® exhibited further increases in the signal responses of these analytes at pH 3.0 and 7.4 with minimal change in the resolution of the anodic peaks. A lower sensitivity was, therefore, observed at the Nafion® and MWCNT modified electrode compared to the Nafion®-modified electrode at pH 3.0 with LODs of 0.59 and 0.80 nM exhibited for Trp and Mel, respectively. Enhanced selectivity for Trp in the presence of Mel can be achieved with MWCNTs in the presence of metallotetrasulphonated phthalocyanines (MTSPcs) particularly at pH 3.0, owing to cation exchange effects. However, the lack of sensitivity towards Trp, and even Mel, at this CoTSPc and MWCNT modified electrode remains a drawback. For DA, detection at the MWCNT and Nafion® surface resulted in improved sensitivity over that of both the bare electrode (613.0 nM) and the Nafion® modified electrode (1045.1 nM) with a calculated LOD of 133.9 nM at this layer. Furthermore, improvements in the selectivity of DA were achieved at the Nafion® and MWCNT modified electrode as exclusion of AA (150 μM) was achieved. At the MWCNT and CoTSPc surface, AA was excluded up to 130 μM with sensitivity for DA extending as low as 14.3 nM, far greater than observed for Trp and Mel. These concentrations are well within physiological concentration ranges and represent the most significant solution yet in terms of AA exclusion and enhanced sensitivity for DA. An examination of the surface layering by impedance spectroscopy and atomic force microscopy indicates that the success of the hybrid sensor utilising CoTSPc and MWCNTs lay in improved dispersion of MWCNTs and improved electron transfer kinetics, facilitated by the net charge of the materials present. This thesis, thus, showed the utility of a judicious selection of synthetic and biological catalysts, polymers and carbon nanomaterials towards a hybrid approach to the electrochemical sensing of Trp, Mel, DA and AA with focus on sensitivity and selectivity of these analytes.
- Full Text:
- Authors: Frith, Kelly-Anne
- Date: 2009
- Subjects: Polymers , Nanostructured materials , Biomolecules , Tryptophan , Melatonin , Electrodes , Electrochemistry , Tryptophan oxygenase
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3980 , http://hdl.handle.net/10962/d1004039 , Polymers , Nanostructured materials , Biomolecules , Tryptophan , Melatonin , Electrodes , Electrochemistry , Tryptophan oxygenase
- Description: The main goals in electroanalytical sensing are towards improved sensitivity and selectivity, or specificity, of an analyte. There are several approaches to achieving these goals with the main approach being modification of an electrode surface with synthetic or natural catalysts (enzymes), polymers and also utilisation of nanostructured materials. At present, there is a strong movement towards hybrid sensing which couple different properties of two or more surface modification approaches. In this thesis, a range of these surface modifications were explored for analysis and detection of two main analytes: the amino acid, tryptophan (Trp); and, the neurotransmitter, dopamine (DA). Specifically, this thesis aimed to utilise these methods to enhance the sensitivity and selectivity for Trp over an interferent, the indoleamine, melatonin (Mel); and, DA over the vitamin, ascorbic acid (AA). For Trp detection, immobilisation of an enzyme, Tryptophanase (Trpase) resulted in poor selectivity for the analyte. However, enhanced sensitivity and selectivity was achieved through pH manipulation of the electrolyte medium at a Nafion®-modified electrode surface for both Trp and Mel. At pH 3.0, the Mel and Trp anodic peak potentials were sufficiently resolved allowing for an LOD of 1.60 and 1.62 nM,respectively, and permitting the accurate analysis of Trp in a dietary supplement containing Mel. Multi-walled carbon nanotubes (MWCNTs) suspended in Nafion® exhibited further increases in the signal responses of these analytes at pH 3.0 and 7.4 with minimal change in the resolution of the anodic peaks. A lower sensitivity was, therefore, observed at the Nafion® and MWCNT modified electrode compared to the Nafion®-modified electrode at pH 3.0 with LODs of 0.59 and 0.80 nM exhibited for Trp and Mel, respectively. Enhanced selectivity for Trp in the presence of Mel can be achieved with MWCNTs in the presence of metallotetrasulphonated phthalocyanines (MTSPcs) particularly at pH 3.0, owing to cation exchange effects. However, the lack of sensitivity towards Trp, and even Mel, at this CoTSPc and MWCNT modified electrode remains a drawback. For DA, detection at the MWCNT and Nafion® surface resulted in improved sensitivity over that of both the bare electrode (613.0 nM) and the Nafion® modified electrode (1045.1 nM) with a calculated LOD of 133.9 nM at this layer. Furthermore, improvements in the selectivity of DA were achieved at the Nafion® and MWCNT modified electrode as exclusion of AA (150 μM) was achieved. At the MWCNT and CoTSPc surface, AA was excluded up to 130 μM with sensitivity for DA extending as low as 14.3 nM, far greater than observed for Trp and Mel. These concentrations are well within physiological concentration ranges and represent the most significant solution yet in terms of AA exclusion and enhanced sensitivity for DA. An examination of the surface layering by impedance spectroscopy and atomic force microscopy indicates that the success of the hybrid sensor utilising CoTSPc and MWCNTs lay in improved dispersion of MWCNTs and improved electron transfer kinetics, facilitated by the net charge of the materials present. This thesis, thus, showed the utility of a judicious selection of synthetic and biological catalysts, polymers and carbon nanomaterials towards a hybrid approach to the electrochemical sensing of Trp, Mel, DA and AA with focus on sensitivity and selectivity of these analytes.
- Full Text:
Possible trace fossils of putative termite origin in the Lower Jurassic (Karoo Supergroup) of South Africa and Lesotho
- Bordy, Emese M, Bumby, A J, Catuneanu, O, Eriksson, P G
- Authors: Bordy, Emese M , Bumby, A J , Catuneanu, O , Eriksson, P G
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6732 , http://hdl.handle.net/10962/d1007541
- Description: Complex structures in the sandstones of the Lower Jurassic aeolian Clarens Formation (Karoo Supergroup) are found at numerous localities throughout southern Africa, and can be assigned to five distinct architectural groups: (1) up to 3.3-m high, free-standing, slab-shaped forms of bioturbated sandstones with elliptical bases, orientated buttresses and an interconnecting large burrow system; (2) up to 1.2-m high, free-standing, irregular forms of bioturbated sandstones with 2-cm to 4-cm thick, massive walls, empty chambers and vertical shafts; (3) about 0.15-m to 0.25-m high, mainly bulbous, multiple forms with thin walls (<2 cm), hollow chambers with internal pillars and bridges; (4) about 0.15-m to 0.2-m (maximum 1-m) high, free-standing forms of aggregated solitary spheres associated with massive horizontal, orientated capsules or tubes, and meniscate tubes; and (5) about 5 cmin diameter, ovoid forms with weak internal shelving in a close-fitting cavity. Based on size, wall thickness, orientation and the presence of internal chambers, these complex structures are tentatively interpreted as ichnofossils of an Early Jurassic social organism; the different architectures are reflective of the different behaviours of more than one species, the history of structural change in architectural forms (ontogenetic series) or an architectural adaptation to local palaeoclimatic variability. While exact modern equivalents are unknown, some of these ichnofossils are comparable to nests (or parts of nests) constructed by extant termites, and thus these Jurassic structures are very tentatively interpreted here as having been made by a soil-dwelling social organism, probably of termite origin. This southern African discovery, along with reported Triassic and Jurassic termite ichnofossils from North America, supports previous hypotheses that sociality in insects, particularity in termites, likely evolved prior to the Pangea breakup in the Early Mesozoic.
- Full Text:
- Authors: Bordy, Emese M , Bumby, A J , Catuneanu, O , Eriksson, P G
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6732 , http://hdl.handle.net/10962/d1007541
- Description: Complex structures in the sandstones of the Lower Jurassic aeolian Clarens Formation (Karoo Supergroup) are found at numerous localities throughout southern Africa, and can be assigned to five distinct architectural groups: (1) up to 3.3-m high, free-standing, slab-shaped forms of bioturbated sandstones with elliptical bases, orientated buttresses and an interconnecting large burrow system; (2) up to 1.2-m high, free-standing, irregular forms of bioturbated sandstones with 2-cm to 4-cm thick, massive walls, empty chambers and vertical shafts; (3) about 0.15-m to 0.25-m high, mainly bulbous, multiple forms with thin walls (<2 cm), hollow chambers with internal pillars and bridges; (4) about 0.15-m to 0.2-m (maximum 1-m) high, free-standing forms of aggregated solitary spheres associated with massive horizontal, orientated capsules or tubes, and meniscate tubes; and (5) about 5 cmin diameter, ovoid forms with weak internal shelving in a close-fitting cavity. Based on size, wall thickness, orientation and the presence of internal chambers, these complex structures are tentatively interpreted as ichnofossils of an Early Jurassic social organism; the different architectures are reflective of the different behaviours of more than one species, the history of structural change in architectural forms (ontogenetic series) or an architectural adaptation to local palaeoclimatic variability. While exact modern equivalents are unknown, some of these ichnofossils are comparable to nests (or parts of nests) constructed by extant termites, and thus these Jurassic structures are very tentatively interpreted here as having been made by a soil-dwelling social organism, probably of termite origin. This southern African discovery, along with reported Triassic and Jurassic termite ichnofossils from North America, supports previous hypotheses that sociality in insects, particularity in termites, likely evolved prior to the Pangea breakup in the Early Mesozoic.
- Full Text:
Predictability of Geomagnetically Induced Currents using neural networks
- Authors: Lotz, Stefanus Ignatius
- Date: 2009
- Subjects: Advanced Composition Explorer (Artificial satellite) , Geomagnetism , Electromagnetic induction , Neural networks (Computer science) , Artificial intelligence
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5483 , http://hdl.handle.net/10962/d1005269 , Advanced Composition Explorer (Artificial satellite) , Geomagnetism , Electromagnetic induction , Neural networks (Computer science) , Artificial intelligence
- Description: It is a well documented fact that Geomagnetically Induced Currents (GIC’s) poses a significant threat to ground-based electric conductor networks like oil pipelines, railways and powerline networks. A study is undertaken to determine the feasibility of using artificial neural network models to predict GIC occurrence in the Southern African power grid. The magnitude of an induced current at a specific location on the Earth’s surface is directly related to the temporal derivative of the geomagnetic field (specifically its horizontal components) at that point. Hence, the focus of the problem is on the prediction of the temporal variations in the horizontal geomagnetic field (@Bx/@t and @By/@t). Artificial neural networks are used to predict @Bx/@t and @By/@t measured at Hermanus, South Africa (34.27◦ S, 19.12◦ E) with a 30 minute prediction lead time. As input parameters to the neural networks, insitu solar wind measurements made by the Advanced Composition Explorer (ACE) satellite are used. The results presented here compare well with similar models developed at high-latitude locations (e.g. Sweden, Finland, Canada) where extensive GIC research has been undertaken. It is concluded that it would indeed be feasible to use a neural network model to predict GIC occurrence in the Southern African power grid, provided that GIC measurements, powerline configuration and network parameters are made available.
- Full Text:
- Authors: Lotz, Stefanus Ignatius
- Date: 2009
- Subjects: Advanced Composition Explorer (Artificial satellite) , Geomagnetism , Electromagnetic induction , Neural networks (Computer science) , Artificial intelligence
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5483 , http://hdl.handle.net/10962/d1005269 , Advanced Composition Explorer (Artificial satellite) , Geomagnetism , Electromagnetic induction , Neural networks (Computer science) , Artificial intelligence
- Description: It is a well documented fact that Geomagnetically Induced Currents (GIC’s) poses a significant threat to ground-based electric conductor networks like oil pipelines, railways and powerline networks. A study is undertaken to determine the feasibility of using artificial neural network models to predict GIC occurrence in the Southern African power grid. The magnitude of an induced current at a specific location on the Earth’s surface is directly related to the temporal derivative of the geomagnetic field (specifically its horizontal components) at that point. Hence, the focus of the problem is on the prediction of the temporal variations in the horizontal geomagnetic field (@Bx/@t and @By/@t). Artificial neural networks are used to predict @Bx/@t and @By/@t measured at Hermanus, South Africa (34.27◦ S, 19.12◦ E) with a 30 minute prediction lead time. As input parameters to the neural networks, insitu solar wind measurements made by the Advanced Composition Explorer (ACE) satellite are used. The results presented here compare well with similar models developed at high-latitude locations (e.g. Sweden, Finland, Canada) where extensive GIC research has been undertaken. It is concluded that it would indeed be feasible to use a neural network model to predict GIC occurrence in the Southern African power grid, provided that GIC measurements, powerline configuration and network parameters are made available.
- Full Text:
Predicting geographic distribution of seven blowfly species (Diptera: Calliphoridae) in South Africa
- Richards, Cameron S, Williams, Kirstin A, Villet, Martin H
- Authors: Richards, Cameron S , Williams, Kirstin A , Villet, Martin H
- Date: 2009
- Language: English
- Type: text , Article
- Identifier: vital:6854 , http://hdl.handle.net/10962/d1011135
- Description: The predicted geographic distributions of seven forensically important blowfly species are modelled using the computer program Maxent, based on selected climatic variables for South Africa, a country with large climatic and environmental gradients. It is shown that although temperature was hypothesized to most influence the distributions of these ectotherms, moisture, and particularly humidity, was in fact usually paramount. Chrysomya albiceps (Wiedemann) and C. marginalis (Robineau-Desvoidy) had the most widespread geographic and climatic distribution, while the forest-associated C. inclinata(Walker) was the least widespread. Chrysomya putoria (Wiedemann) and C. megacephala (Fabricius) had very similar predicted distributions that were restricted mainly to Limpopo, Mpumalanga, KwaZulu-Natal and the coast of the Eastern Cape. Chrysomya chloropyga (Wiedemann) and Calliphora croceipalpis (Jaennicke) were the only species predicted to occur at high altitudes. Blowfly distributions restricted to part of the map area were predicted better than those that were more widespread in the region, presumably because species with extremely widespread distributions in a study area occupy nearly the whole range of variation of most predictor variables, leaving little variation with which themaximumentropy modelling method can discriminate between presence and absence of the organism.
- Full Text:
Predicting geographic distribution of seven blowfly species (Diptera: Calliphoridae) in South Africa
- Authors: Richards, Cameron S , Williams, Kirstin A , Villet, Martin H
- Date: 2009
- Language: English
- Type: text , Article
- Identifier: vital:6854 , http://hdl.handle.net/10962/d1011135
- Description: The predicted geographic distributions of seven forensically important blowfly species are modelled using the computer program Maxent, based on selected climatic variables for South Africa, a country with large climatic and environmental gradients. It is shown that although temperature was hypothesized to most influence the distributions of these ectotherms, moisture, and particularly humidity, was in fact usually paramount. Chrysomya albiceps (Wiedemann) and C. marginalis (Robineau-Desvoidy) had the most widespread geographic and climatic distribution, while the forest-associated C. inclinata(Walker) was the least widespread. Chrysomya putoria (Wiedemann) and C. megacephala (Fabricius) had very similar predicted distributions that were restricted mainly to Limpopo, Mpumalanga, KwaZulu-Natal and the coast of the Eastern Cape. Chrysomya chloropyga (Wiedemann) and Calliphora croceipalpis (Jaennicke) were the only species predicted to occur at high altitudes. Blowfly distributions restricted to part of the map area were predicted better than those that were more widespread in the region, presumably because species with extremely widespread distributions in a study area occupy nearly the whole range of variation of most predictor variables, leaving little variation with which themaximumentropy modelling method can discriminate between presence and absence of the organism.
- Full Text:
Preservation or exploitation? : a study of the development of the mining rights legislation on the Witwatersrand goldfields from 1886 to 2008
- Authors: Stott, Joan
- Date: 2009
- Subjects: Ostrom, Elinor Chamber of Mines of South Africa Gold mines and mining -- South Africa -- Witwatersrand -- History Mineral industries -- Finance -- South Africa Mining law -- South Africa
- Language: English
- Type: Thesis , Masters , MEcon
- Identifier: vital:988 , http://hdl.handle.net/10962/d1002723
- Description: Elinor Ostrom (2005: 238) assumes that in understanding the make up and behaviour of institutional systems governing natural resources: “Resource users are explicitly thought of as rational egoists who plunder local resources so as to maximise their own short-term benefits. Government officials are implicitly depicted, on the other hand, as seeking, the more general public interest, having the relevant information at hand and the capability of designing optimal policies.” This thesis examines the validity of this assumption through an historical analysis of the deep-level gold mining industry of the Witwatersrand, South Africa. The main focus of the assessment is on the institutions of ownership – that is, the development of mining rights and title legislation between 1886 and 2008. The study looks at the legislations’ transformation and implementation from the perspective of the gold mining industry – made up of the mining finance houses and the Chamber of Mines of South Africa – and that of the state. The transformation of the mining industry’s institutional framework was both a choice by government as well as that of the firms in the mining industry. The theoretical framework is constructed from four areas of economic thought. These include: the neoclassical and Keynesian schools of macroeconomic thought; industrial organisation and its relevance to the relationship between firms and the market; institutional and new institutional economics; and finally property rights. The determinants of policy design and the impact of such design on firms and industry is examined. The development, implementation and use of the aforementioned legislation is examined from two perspectives, namely, that of preserver or exploiter. Throughout the history of this prominent South African industry, the motivation for action from the industry or government has oscillated between the two extremes of preserver or exploiter over the time period examined. The conclusion is drawn on an overall and broad focus of actions – with a strong focus on the most recent developments in mining legislation – post-1992.
- Full Text:
- Authors: Stott, Joan
- Date: 2009
- Subjects: Ostrom, Elinor Chamber of Mines of South Africa Gold mines and mining -- South Africa -- Witwatersrand -- History Mineral industries -- Finance -- South Africa Mining law -- South Africa
- Language: English
- Type: Thesis , Masters , MEcon
- Identifier: vital:988 , http://hdl.handle.net/10962/d1002723
- Description: Elinor Ostrom (2005: 238) assumes that in understanding the make up and behaviour of institutional systems governing natural resources: “Resource users are explicitly thought of as rational egoists who plunder local resources so as to maximise their own short-term benefits. Government officials are implicitly depicted, on the other hand, as seeking, the more general public interest, having the relevant information at hand and the capability of designing optimal policies.” This thesis examines the validity of this assumption through an historical analysis of the deep-level gold mining industry of the Witwatersrand, South Africa. The main focus of the assessment is on the institutions of ownership – that is, the development of mining rights and title legislation between 1886 and 2008. The study looks at the legislations’ transformation and implementation from the perspective of the gold mining industry – made up of the mining finance houses and the Chamber of Mines of South Africa – and that of the state. The transformation of the mining industry’s institutional framework was both a choice by government as well as that of the firms in the mining industry. The theoretical framework is constructed from four areas of economic thought. These include: the neoclassical and Keynesian schools of macroeconomic thought; industrial organisation and its relevance to the relationship between firms and the market; institutional and new institutional economics; and finally property rights. The determinants of policy design and the impact of such design on firms and industry is examined. The development, implementation and use of the aforementioned legislation is examined from two perspectives, namely, that of preserver or exploiter. Throughout the history of this prominent South African industry, the motivation for action from the industry or government has oscillated between the two extremes of preserver or exploiter over the time period examined. The conclusion is drawn on an overall and broad focus of actions – with a strong focus on the most recent developments in mining legislation – post-1992.
- Full Text:
Production networks, economic integration and the services sector: Implications for regional trade agreements in southern Africa
- Authors: Cattaneo, Nicolette S
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/470237 , vital:77339 , https://doi.org/10.1080/02589000903399496
- Description: Debate on an appropriate framework for economic integration in southern Africa has hitherto focused largely on matters relating to trade in final goods, with little analysis of the potential benefits of production sharing and fragmented trade, or of challenges related to the accompanying role of the services sector. The first goal of this article is thus to explore the possible benefits for the development of specialisation and trade expansion related to the international fragmentation of production, and whether such benefits may be better harnessed by southern African countries in a context of regional integration. Secondly, the critical role of the services sector in production-sharing arrangements leads to questions about developing country services sectors and regional versus multilateral services liberalisation. The article therefore considers the importance of the services sector in the fragmentation context, and the growing debates surrounding services aspects of developing country regional trade agreements. It is argued that while there may be a case for the promotion of production-sharing arrangements in regional trade agreements in southern Africa, key constraints that continue to hinder the region's trade and development agenda remain the conflicting rules of origin in economic arrangements with overlapping membership, and non-tariff barriers to trade, particularly intra-regional transport costs.
- Full Text:
- Authors: Cattaneo, Nicolette S
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/470237 , vital:77339 , https://doi.org/10.1080/02589000903399496
- Description: Debate on an appropriate framework for economic integration in southern Africa has hitherto focused largely on matters relating to trade in final goods, with little analysis of the potential benefits of production sharing and fragmented trade, or of challenges related to the accompanying role of the services sector. The first goal of this article is thus to explore the possible benefits for the development of specialisation and trade expansion related to the international fragmentation of production, and whether such benefits may be better harnessed by southern African countries in a context of regional integration. Secondly, the critical role of the services sector in production-sharing arrangements leads to questions about developing country services sectors and regional versus multilateral services liberalisation. The article therefore considers the importance of the services sector in the fragmentation context, and the growing debates surrounding services aspects of developing country regional trade agreements. It is argued that while there may be a case for the promotion of production-sharing arrangements in regional trade agreements in southern Africa, key constraints that continue to hinder the region's trade and development agenda remain the conflicting rules of origin in economic arrangements with overlapping membership, and non-tariff barriers to trade, particularly intra-regional transport costs.
- Full Text:
Profitability in sorghum production in three villages of Kaduna State, Nigeria
- Baiyegunhi, Lloyd J S, Fraser, Gavin C G
- Authors: Baiyegunhi, Lloyd J S , Fraser, Gavin C G
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/472720 , vital:77566
- Description: Poverty in Nigeria is overwhelmingly a rural problem. In 1985, 86.6 percent of those living below poverty line of US $1 per day were in the agricultural sector. This figure dropped to 66 per cent in 1992. However, of the total population of poor people in 1992, 10 million were living in the rural areas and are engaged in farming. Nigerian small-scale farmers are characterized by the use of unimproved inputs and traditional production tools that are capable of generating only very small incomes. This low income of the farmers leads to vicious cycle of poverty with low levels of savings and investments, which in turn leads to low productivity and low income. In explaining the poverty status of farmers, it is necessary to look into the profitability of their farm enterprise to show the close links existing between productivity and farm income. This study attempts to estimate the profitability of sole sorghum production on small and large scale farms, it uses the gross margin analysis to determine the farm income on small and large scale farms. Empirical results indicate that the farmers are making profits, given the benefits relative to costs involved in sorghum production on both the small and large scale farms. To fully tap the potential of increase productivity and farm income, the study surmises that expanded access to improved technologies on sorghum production should be extended to the farmers through extension services.
- Full Text:
- Authors: Baiyegunhi, Lloyd J S , Fraser, Gavin C G
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/472720 , vital:77566
- Description: Poverty in Nigeria is overwhelmingly a rural problem. In 1985, 86.6 percent of those living below poverty line of US $1 per day were in the agricultural sector. This figure dropped to 66 per cent in 1992. However, of the total population of poor people in 1992, 10 million were living in the rural areas and are engaged in farming. Nigerian small-scale farmers are characterized by the use of unimproved inputs and traditional production tools that are capable of generating only very small incomes. This low income of the farmers leads to vicious cycle of poverty with low levels of savings and investments, which in turn leads to low productivity and low income. In explaining the poverty status of farmers, it is necessary to look into the profitability of their farm enterprise to show the close links existing between productivity and farm income. This study attempts to estimate the profitability of sole sorghum production on small and large scale farms, it uses the gross margin analysis to determine the farm income on small and large scale farms. Empirical results indicate that the farmers are making profits, given the benefits relative to costs involved in sorghum production on both the small and large scale farms. To fully tap the potential of increase productivity and farm income, the study surmises that expanded access to improved technologies on sorghum production should be extended to the farmers through extension services.
- Full Text:
Promoting indigenous vegetables in urban agriculture & livelihoods : policy lessons from Sub-Saharan Africa
- Shackleton, Charlie M, Pasquini, Margaret W, Ambrose-Oji, Bianca, Drescher, Axel W
- Authors: Shackleton, Charlie M , Pasquini, Margaret W , Ambrose-Oji, Bianca , Drescher, Axel W
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6619 , http://hdl.handle.net/10962/d1016227
- Description: [From Introduction] Globally, the growth of urbanised areas continues at an exponential rate, and most spectacularly in the developing world. The global urban population will increase from 2.9 billion in 2000 to 5.0 billion by 2030. The mean rate of urban growth in non-OECD countries between 2000 and 2005 was just under 3% per annum, compared to 0.5 % for rural regions of the same countries (UN-Habitat 2006). Although the proportion of Africans currently living in urban areas is the lowest in the world (+ 40%), because of this low base it is not unsurprising that the rates of urbanisation are among the highest at approximately 4.3% per annum. Projections vary, but sometime in the mid- 2020s over 50% of Africa's population will be living in urban areas, as compared to just 15% in 1950 and 34% in 1994. As urbanisation takes place another important trend is revealed, namely the locus of poverty in Africa is slowly shifting from rural to urban areas. For example, it is estimated that more than 56% of the world's absolute or chronic poor will be concentrated in urban areas (WRI 1996). Since as much as 60-80% of the income of the urban poor is spent on the purchase of food (Maxwell et al. 2000), the issue of food supply, both its quantity and quality, is increasingly a central issue in poverty reduction debates and strategies. In rural areas, a common strategy to alleviate poverty is to call for measures to boost small-holder food production. Surprisingly, this is less common in urban poverty alleviation programmes, despite the widespread promise of urban and household agriculture in contributing to improved food security.
- Full Text:
- Authors: Shackleton, Charlie M , Pasquini, Margaret W , Ambrose-Oji, Bianca , Drescher, Axel W
- Date: 2009
- Language: English
- Type: Article
- Identifier: vital:6619 , http://hdl.handle.net/10962/d1016227
- Description: [From Introduction] Globally, the growth of urbanised areas continues at an exponential rate, and most spectacularly in the developing world. The global urban population will increase from 2.9 billion in 2000 to 5.0 billion by 2030. The mean rate of urban growth in non-OECD countries between 2000 and 2005 was just under 3% per annum, compared to 0.5 % for rural regions of the same countries (UN-Habitat 2006). Although the proportion of Africans currently living in urban areas is the lowest in the world (+ 40%), because of this low base it is not unsurprising that the rates of urbanisation are among the highest at approximately 4.3% per annum. Projections vary, but sometime in the mid- 2020s over 50% of Africa's population will be living in urban areas, as compared to just 15% in 1950 and 34% in 1994. As urbanisation takes place another important trend is revealed, namely the locus of poverty in Africa is slowly shifting from rural to urban areas. For example, it is estimated that more than 56% of the world's absolute or chronic poor will be concentrated in urban areas (WRI 1996). Since as much as 60-80% of the income of the urban poor is spent on the purchase of food (Maxwell et al. 2000), the issue of food supply, both its quantity and quality, is increasingly a central issue in poverty reduction debates and strategies. In rural areas, a common strategy to alleviate poverty is to call for measures to boost small-holder food production. Surprisingly, this is less common in urban poverty alleviation programmes, despite the widespread promise of urban and household agriculture in contributing to improved food security.
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Protein secondary structure prediction using neural networks and support vector machines
- Authors: Tsilo, Lipontseng Cecilia
- Date: 2009
- Subjects: Neural networks (Computer science) , Support vector machines , Proteins -- Structure -- Mathematical models
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5569 , http://hdl.handle.net/10962/d1002809 , Neural networks (Computer science) , Support vector machines , Proteins -- Structure -- Mathematical models
- Description: Predicting the secondary structure of proteins is important in biochemistry because the 3D structure can be determined from the local folds that are found in secondary structures. Moreover, knowing the tertiary structure of proteins can assist in determining their functions. The objective of this thesis is to compare the performance of Neural Networks (NN) and Support Vector Machines (SVM) in predicting the secondary structure of 62 globular proteins from their primary sequence. For each NN and SVM, we created six binary classifiers to distinguish between the classes’ helices (H) strand (E), and coil (C). For NN we use Resilient Backpropagation training with and without early stopping. We use NN with either no hidden layer or with one hidden layer with 1,2,...,40 hidden neurons. For SVM we use a Gaussian kernel with parameter fixed at = 0.1 and varying cost parameters C in the range [0.1,5]. 10- fold cross-validation is used to obtain overall estimates for the probability of making a correct prediction. Our experiments indicate for NN and SVM that the different binary classifiers have varying accuracies: from 69% correct predictions for coils vs. non-coil up to 80% correct predictions for stand vs. non-strand. It is further demonstrated that NN with no hidden layer or not more than 2 hidden neurons in the hidden layer are sufficient for better predictions. For SVM we show that the estimated accuracies do not depend on the value of the cost parameter. As a major result, we will demonstrate that the accuracy estimates of NN and SVM binary classifiers cannot distinguish. This contradicts a modern belief in bioinformatics that SVM outperforms other predictors.
- Full Text:
- Authors: Tsilo, Lipontseng Cecilia
- Date: 2009
- Subjects: Neural networks (Computer science) , Support vector machines , Proteins -- Structure -- Mathematical models
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5569 , http://hdl.handle.net/10962/d1002809 , Neural networks (Computer science) , Support vector machines , Proteins -- Structure -- Mathematical models
- Description: Predicting the secondary structure of proteins is important in biochemistry because the 3D structure can be determined from the local folds that are found in secondary structures. Moreover, knowing the tertiary structure of proteins can assist in determining their functions. The objective of this thesis is to compare the performance of Neural Networks (NN) and Support Vector Machines (SVM) in predicting the secondary structure of 62 globular proteins from their primary sequence. For each NN and SVM, we created six binary classifiers to distinguish between the classes’ helices (H) strand (E), and coil (C). For NN we use Resilient Backpropagation training with and without early stopping. We use NN with either no hidden layer or with one hidden layer with 1,2,...,40 hidden neurons. For SVM we use a Gaussian kernel with parameter fixed at = 0.1 and varying cost parameters C in the range [0.1,5]. 10- fold cross-validation is used to obtain overall estimates for the probability of making a correct prediction. Our experiments indicate for NN and SVM that the different binary classifiers have varying accuracies: from 69% correct predictions for coils vs. non-coil up to 80% correct predictions for stand vs. non-strand. It is further demonstrated that NN with no hidden layer or not more than 2 hidden neurons in the hidden layer are sufficient for better predictions. For SVM we show that the estimated accuracies do not depend on the value of the cost parameter. As a major result, we will demonstrate that the accuracy estimates of NN and SVM binary classifiers cannot distinguish. This contradicts a modern belief in bioinformatics that SVM outperforms other predictors.
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Pseudopolydora species associated with mollusc shells on the south coast of South Africa, with the description of Ps. dayii, sp nov
- Authors: Simon, Carol A
- Date: 2009
- Language: English
- Type: text , Article
- Identifier: vital:6875 , http://hdl.handle.net/10962/d1011623
- Description: Two species of the genus Pseudopolydora, Ps. dayii, sp. nov. and Ps. antennata, were associated with gastropods on the south and south-east coasts of South Africa. Pseudopolydora dayii is characterized by prominent post-chaetal notopodial lobes on chaetiger 1 with very long chaetae, a prominent occipital tentacle, having hooded hooks that start on chaetiger 9, branchiae that start on chaetiger 6, stout hooks and lobes placed latero-posteriorly to the hooded hooks in posterior chaetigers. It is a surface-fouler and was found on several species of wild gastropods at four of the five sites sampled and from additional material from the south-west coast and on cultured abalone (Haliotis midae) at a farm on the south-west coast. Three individuals of Ps. antennata were found only with oysters at the easternmost site. This was the first record of this species outside of the Western Cape Province and it is possible that their association with the oysters was fortuitous.
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- Authors: Simon, Carol A
- Date: 2009
- Language: English
- Type: text , Article
- Identifier: vital:6875 , http://hdl.handle.net/10962/d1011623
- Description: Two species of the genus Pseudopolydora, Ps. dayii, sp. nov. and Ps. antennata, were associated with gastropods on the south and south-east coasts of South Africa. Pseudopolydora dayii is characterized by prominent post-chaetal notopodial lobes on chaetiger 1 with very long chaetae, a prominent occipital tentacle, having hooded hooks that start on chaetiger 9, branchiae that start on chaetiger 6, stout hooks and lobes placed latero-posteriorly to the hooded hooks in posterior chaetigers. It is a surface-fouler and was found on several species of wild gastropods at four of the five sites sampled and from additional material from the south-west coast and on cultured abalone (Haliotis midae) at a farm on the south-west coast. Three individuals of Ps. antennata were found only with oysters at the easternmost site. This was the first record of this species outside of the Western Cape Province and it is possible that their association with the oysters was fortuitous.
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Public discourses on choice of termination of pregnancy in a rural area of the Eastern Cape Province in South Africa
- Authors: Sigcau, Nomakhosi
- Date: 2009
- Subjects: Abortion -- South Africa -- Eastern Cape Abortion -- Public opinion Abortion -- Moral and ethical aspects Abortion -- Social aspects Abortion -- Psychological aspects Discourse analysis -- South Africa
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:3055 , http://hdl.handle.net/10962/d1002564
- Description: A period of ten years has elapsed since the Choice on Termination of Pregnancy Act came into effect. Little has been done in South Africa to investigate public discourses concerning termination of pregnancy since the implementation of the Act. The social context and the quality of available support systems determine the outcome of the women’s feelings after the abortion. Knowledge about the social context is important, as it will help to understand the complexities and nuances of abortion. The aim of the research is to explore public discourses on Choice on Termination of Pregnancy (CTOP), and the potential implications of these discourses on the use of the CTOP service. The sample consisted of 23 black isiXhosa-speaking participants from the rural area of the Eastern Cape Province in South Africa. Four focus groups coming from different age groups (between the ages 18 and 52) with both men and women participated in the study. Fictitious vignettes that tap into two different scenarios regarding abortion based on women’s stories were used. Discourses that emerged from people’s text are explained, described and interpreted through a discourse analysis. Since the study was interested in public discourses it led to the discovery of 17 interpretative repertoires as follows: social stigma, abortion equated to murder, degradation of society, pregnancy as an irresponsible act, conditional acceptance, TOP in the context of marriage, future potentiality invested in the foetus, dehumanizing foetus into a clot, shared decision making responsibility, gender dynamics interpretative repertoire, negative post abortion consequences, the scolding versus the supportive nurse interpretative repertoire, alternatives interpretative repertoire, rights versus no responsibility interpretative repertoire, more knowledge needed, male and female or generational differentiation repertoire, and the positive effects repertoire. Abortion is opposed on religious and cultural grounds. TOP has been legalized in South Africa but with this a debate and conflicting views have arisen. These variations in people’s discourses may limit access to TOP for women who need the service.
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- Authors: Sigcau, Nomakhosi
- Date: 2009
- Subjects: Abortion -- South Africa -- Eastern Cape Abortion -- Public opinion Abortion -- Moral and ethical aspects Abortion -- Social aspects Abortion -- Psychological aspects Discourse analysis -- South Africa
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:3055 , http://hdl.handle.net/10962/d1002564
- Description: A period of ten years has elapsed since the Choice on Termination of Pregnancy Act came into effect. Little has been done in South Africa to investigate public discourses concerning termination of pregnancy since the implementation of the Act. The social context and the quality of available support systems determine the outcome of the women’s feelings after the abortion. Knowledge about the social context is important, as it will help to understand the complexities and nuances of abortion. The aim of the research is to explore public discourses on Choice on Termination of Pregnancy (CTOP), and the potential implications of these discourses on the use of the CTOP service. The sample consisted of 23 black isiXhosa-speaking participants from the rural area of the Eastern Cape Province in South Africa. Four focus groups coming from different age groups (between the ages 18 and 52) with both men and women participated in the study. Fictitious vignettes that tap into two different scenarios regarding abortion based on women’s stories were used. Discourses that emerged from people’s text are explained, described and interpreted through a discourse analysis. Since the study was interested in public discourses it led to the discovery of 17 interpretative repertoires as follows: social stigma, abortion equated to murder, degradation of society, pregnancy as an irresponsible act, conditional acceptance, TOP in the context of marriage, future potentiality invested in the foetus, dehumanizing foetus into a clot, shared decision making responsibility, gender dynamics interpretative repertoire, negative post abortion consequences, the scolding versus the supportive nurse interpretative repertoire, alternatives interpretative repertoire, rights versus no responsibility interpretative repertoire, more knowledge needed, male and female or generational differentiation repertoire, and the positive effects repertoire. Abortion is opposed on religious and cultural grounds. TOP has been legalized in South Africa but with this a debate and conflicting views have arisen. These variations in people’s discourses may limit access to TOP for women who need the service.
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