Hierarchical spatial organization and prioritization of wetlands: a conceptual model for wetland rehabilitation in South Africa
- Sieben, E J J, Ellery, William F N, Kotze, Donovan C, Rountree, M
- Authors: Sieben, E J J , Ellery, William F N , Kotze, Donovan C , Rountree, M
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144399 , vital:38342 , DOI: 10.1007/s11273-011-9212-8
- Description: Wetland rehabilitation planning needs to take into account many different aspects of the wetland and its context. In South Africa, much emphasis is placed on the delivery of ecosystem services, poverty relief and skills development for those involved in labour-intensive rehabilitation measures. A framework is presented that facilitates decision-making with regards to wetland rehabilitation planning. This starts with prioritizing which wetlands need attention within a catchment. This is followed by decisions regarding which rehabilitation measures would be effective in improving certain ecosystem services based upon the aims of rehabilitation and the social context of the surrounding catchment.
- Full Text:
- Date Issued: 2011
- Authors: Sieben, E J J , Ellery, William F N , Kotze, Donovan C , Rountree, M
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144399 , vital:38342 , DOI: 10.1007/s11273-011-9212-8
- Description: Wetland rehabilitation planning needs to take into account many different aspects of the wetland and its context. In South Africa, much emphasis is placed on the delivery of ecosystem services, poverty relief and skills development for those involved in labour-intensive rehabilitation measures. A framework is presented that facilitates decision-making with regards to wetland rehabilitation planning. This starts with prioritizing which wetlands need attention within a catchment. This is followed by decisions regarding which rehabilitation measures would be effective in improving certain ecosystem services based upon the aims of rehabilitation and the social context of the surrounding catchment.
- Full Text:
- Date Issued: 2011
Paper bridges: a critical examination of the Daily Dispatch's ‘community dialogues’
- Authors: Amner, Roderick J
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142645 , vital:38098 , https://doi.org/10.1080/02560054.2011.545564
- Description: A series of town-hall-like meetings called the ‘community dialogues’ were conducted in 2009 by the Daily Dispatch newspaper in East London, under the banner of public/civic journalism, a global journalistic reform movement begun in the United States in the late 1980s. the editorial leadership of the newspaper imagined a number of core journalistic and civic purposes for the dialogues and succeeded in achieving some of these. However, the newspaper's claim that the dialogues could help to build ‘horizontal bridges’ between diverse communities in East London is critically examined through the example of two community dialogues which took place in neighbouring locations - the predominantly white, middle-class suburb of Beacon Bay, and the informal African settlement of Nompumelelo - on consecutive days in 2009. This article argues that social inequalities, particularly acute in the South African context, may preclude the emergence of a shared vision of the common good, and that joint deliberation between diverse social groups in the pursuit of consensus may not be realistic or even an appropriate goal, especially if it means ratifying an unjust status quo.
- Full Text:
- Date Issued: 2011
- Authors: Amner, Roderick J
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142645 , vital:38098 , https://doi.org/10.1080/02560054.2011.545564
- Description: A series of town-hall-like meetings called the ‘community dialogues’ were conducted in 2009 by the Daily Dispatch newspaper in East London, under the banner of public/civic journalism, a global journalistic reform movement begun in the United States in the late 1980s. the editorial leadership of the newspaper imagined a number of core journalistic and civic purposes for the dialogues and succeeded in achieving some of these. However, the newspaper's claim that the dialogues could help to build ‘horizontal bridges’ between diverse communities in East London is critically examined through the example of two community dialogues which took place in neighbouring locations - the predominantly white, middle-class suburb of Beacon Bay, and the informal African settlement of Nompumelelo - on consecutive days in 2009. This article argues that social inequalities, particularly acute in the South African context, may preclude the emergence of a shared vision of the common good, and that joint deliberation between diverse social groups in the pursuit of consensus may not be realistic or even an appropriate goal, especially if it means ratifying an unjust status quo.
- Full Text:
- Date Issued: 2011
Study of protein complexes via homology modeling, applied to cysteine proteases and their protein inhibitors:
- Tastan Bishop, Özlem, Kroon, Matthys
- Authors: Tastan Bishop, Özlem , Kroon, Matthys
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148070 , vital:38707 , DOI: 10.1007/s00894-011-0990-y
- Description: This paper develops and evaluates large-scale calculation of 3D structures of protein complexes by homology modeling as a promising new approach for protein docking. The complexes investigated were papain-like cysteine proteases and their protein inhibitors, which play numerous roles in human and parasitic metabolisms. The structural modeling was performed in two parts. For the first part (evaluation set), nine crystal structure complexes were selected, 1325 homology models of known complexes were rebuilt by various templates including hybrids, allowing an analysis of the factors influencing the accuracy of the models. The important considerations for modeling the interface were protease coverage and inhibitor sequence identity. In the second part (study set), the findings of the evaluation set were used to select appropriate templates to model novel cysteine protease-inhibitor complexes from human and malaria parasites Plasmodium falciparum and Plasmodium vivax. The energy scores, considering the evaluation set, indicate that the models are of high accuracy.
- Full Text:
- Date Issued: 2011
- Authors: Tastan Bishop, Özlem , Kroon, Matthys
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148070 , vital:38707 , DOI: 10.1007/s00894-011-0990-y
- Description: This paper develops and evaluates large-scale calculation of 3D structures of protein complexes by homology modeling as a promising new approach for protein docking. The complexes investigated were papain-like cysteine proteases and their protein inhibitors, which play numerous roles in human and parasitic metabolisms. The structural modeling was performed in two parts. For the first part (evaluation set), nine crystal structure complexes were selected, 1325 homology models of known complexes were rebuilt by various templates including hybrids, allowing an analysis of the factors influencing the accuracy of the models. The important considerations for modeling the interface were protease coverage and inhibitor sequence identity. In the second part (study set), the findings of the evaluation set were used to select appropriate templates to model novel cysteine protease-inhibitor complexes from human and malaria parasites Plasmodium falciparum and Plasmodium vivax. The energy scores, considering the evaluation set, indicate that the models are of high accuracy.
- Full Text:
- Date Issued: 2011
Theiler’s murine encephalomyelitis virus infection induces a redistribution of heat shock proteins 70 and 90 in BHK-21 cells, and is inhibited by novobiocin and geldanamycin:
- Mutsvunguma, Lorraine Z, Moetlhoa, Boitumelo, Edkins, Adrienne L, Luke, Garry A, Blatch, Gregory L, Knox, Caroline M
- Authors: Mutsvunguma, Lorraine Z , Moetlhoa, Boitumelo , Edkins, Adrienne L , Luke, Garry A , Blatch, Gregory L , Knox, Caroline M
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165085 , vital:41207 , DOI: 10.1007/s12192-011-0262-x
- Description: Theiler’s murine encephalomyelitis virus (TMEV) is a positive-sense RNA virus belonging to the Cardiovirus genus in the family Picornaviridae. In addition to other host cellular factors and pathways, picornaviruses utilise heat shock proteins (Hsps) to facilitate their propagation in cells. This study investigated the localisation of Hsps 70 and 90 in TMEV-infected BHK-21 cells by indirect immunofluorescence and confocal microscopy. The effect of Hsp90 inhibitors novobiocin (Nov) and geldanamycin (GA) on the development of cytopathic effect (CPE) induced by infection was also examined. Hsp90 staining was uniformly distributed in the cytoplasm of uninfected cells but was found concentrated in the perinuclear region during late infection where it overlapped with the signal for non-structural protein 2C within the viral replication complex.
- Full Text:
- Date Issued: 2011
- Authors: Mutsvunguma, Lorraine Z , Moetlhoa, Boitumelo , Edkins, Adrienne L , Luke, Garry A , Blatch, Gregory L , Knox, Caroline M
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165085 , vital:41207 , DOI: 10.1007/s12192-011-0262-x
- Description: Theiler’s murine encephalomyelitis virus (TMEV) is a positive-sense RNA virus belonging to the Cardiovirus genus in the family Picornaviridae. In addition to other host cellular factors and pathways, picornaviruses utilise heat shock proteins (Hsps) to facilitate their propagation in cells. This study investigated the localisation of Hsps 70 and 90 in TMEV-infected BHK-21 cells by indirect immunofluorescence and confocal microscopy. The effect of Hsp90 inhibitors novobiocin (Nov) and geldanamycin (GA) on the development of cytopathic effect (CPE) induced by infection was also examined. Hsp90 staining was uniformly distributed in the cytoplasm of uninfected cells but was found concentrated in the perinuclear region during late infection where it overlapped with the signal for non-structural protein 2C within the viral replication complex.
- Full Text:
- Date Issued: 2011
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