Synthesis and characterization of novel zinc phthalocyanines as potential photosensitizers for photodynamic therapy of cancers
- Moeno, Sharon, Ermilov, E A, Kuzyniak, W, Höpfner, M, Krause, Rui W M
- Authors: Moeno, Sharon , Ermilov, E A , Kuzyniak, W , Höpfner, M , Krause, Rui W M
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123673 , vital:35471 , https://doi.org/10.1039/C3PP50393C
- Description: Two novel zinc phthalocyanines (Pcs): tetramethyl tetrakis-2,(3)-[(4-methyl-2-pyridyloxy)phthalocyaninato] zinc(II) (4) and (the negatively charged form) tetrakis-2,(3)-[(3-carboxylicacid-6-sulfanylpyridine)phthalocyaninato] zinc(II) (5), water soluble by virtue of their ionic substituent groups were synthesized. The spectroscopic properties of both compounds were determined and their photodynamic activities were investigated in a human tumor cell model. In aqueous media the two peripherally substituted water soluble Pcs are highly aggregated. The phototoxic activity of the two novel Pcs (Pc 4 and Pc 5; 0–20 μM) was shown to be time- and dose-dependent in human pancreatic carcinoid BON cells, leading to a reduction of tumor cells of >80% compared to the controls. The effectiveness of the treatment appeared to be attenuated by the aggregation of Pcs under aqueous conditions. Interestingly, even those cells that were not immediately killed by the photoactivated photosensitizer seemed to be affected by the Pc photodynamic activity, as a single PDT induced long-lasting effects on cell survival. Even 4 days after PDT, the number of surviving cells did not re-increase or still dropped, as compared to control cells. The underlying mechanism of this observation has to be deciphered in future investigations.
- Full Text:
- Date Issued: 2014
- Authors: Moeno, Sharon , Ermilov, E A , Kuzyniak, W , Höpfner, M , Krause, Rui W M
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123673 , vital:35471 , https://doi.org/10.1039/C3PP50393C
- Description: Two novel zinc phthalocyanines (Pcs): tetramethyl tetrakis-2,(3)-[(4-methyl-2-pyridyloxy)phthalocyaninato] zinc(II) (4) and (the negatively charged form) tetrakis-2,(3)-[(3-carboxylicacid-6-sulfanylpyridine)phthalocyaninato] zinc(II) (5), water soluble by virtue of their ionic substituent groups were synthesized. The spectroscopic properties of both compounds were determined and their photodynamic activities were investigated in a human tumor cell model. In aqueous media the two peripherally substituted water soluble Pcs are highly aggregated. The phototoxic activity of the two novel Pcs (Pc 4 and Pc 5; 0–20 μM) was shown to be time- and dose-dependent in human pancreatic carcinoid BON cells, leading to a reduction of tumor cells of >80% compared to the controls. The effectiveness of the treatment appeared to be attenuated by the aggregation of Pcs under aqueous conditions. Interestingly, even those cells that were not immediately killed by the photoactivated photosensitizer seemed to be affected by the Pc photodynamic activity, as a single PDT induced long-lasting effects on cell survival. Even 4 days after PDT, the number of surviving cells did not re-increase or still dropped, as compared to control cells. The underlying mechanism of this observation has to be deciphered in future investigations.
- Full Text:
- Date Issued: 2014
Synthesis and characterization of quantum dots designed for biomedical use
- Kuzyniak, Weronika, Adegoke, Oluwasesan, Sekhosana, Kutloana E, D'Souza, Sarah, Tshangana, Sesethu Charmaine, Hoffmann, Björn, Ermilov, Eugeny A, Nyokong, Tebello, Höpfner, Michael
- Authors: Kuzyniak, Weronika , Adegoke, Oluwasesan , Sekhosana, Kutloana E , D'Souza, Sarah , Tshangana, Sesethu Charmaine , Hoffmann, Björn , Ermilov, Eugeny A , Nyokong, Tebello , Höpfner, Michael
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241516 , vital:50946 , xlink:href="https://doi.org/10.1016/j.ijpharm.2014.03.037"
- Description: Semiconductor quantum dots (QDs) have become promising nanoparticles for a wide variety of biomedical applications. However, the major drawback of QDs is their potential toxicity. Here, we determined possible cytotoxic effects of a set of QDs by systematic photophysical evaluation in vitro as well as in vivo. QDs were synthesized by the hydrothermal aqueous route with sizes in the range of 2.0–3.5 nm. Cytotoxic effects of QDs were studied in the human pancreatic carcinoid cell line BON. Cadmium telluride QDs with or without zinc sulfide shell and coated with 3-mercaptopropionic acid (MPA) were highly cytotoxic even at nanomolar concentrations. Capping with L-glutathione (GSH) or thioglycolic acid (TGA) reduced the cytotoxicity of cadmium telluride QDs and cadmium selenide QDs. Determination of the toxicity of QDs revealed IC50 values in the micromolar range. In vivo studies showed good tolerability of CdSe QDs with ZnS shell and GSH capping. We could demonstrate that QDs with ZnS shell and GSH capping exhibit low toxicity and good tolerability in cell models and living organisms. These QDs appear to be promising candidates for biomedical applications such as drug delivery for enhanced chemotherapy or targeted delivery of light sensitive substances for photodynamic therapy.
- Full Text:
- Date Issued: 2014
- Authors: Kuzyniak, Weronika , Adegoke, Oluwasesan , Sekhosana, Kutloana E , D'Souza, Sarah , Tshangana, Sesethu Charmaine , Hoffmann, Björn , Ermilov, Eugeny A , Nyokong, Tebello , Höpfner, Michael
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241516 , vital:50946 , xlink:href="https://doi.org/10.1016/j.ijpharm.2014.03.037"
- Description: Semiconductor quantum dots (QDs) have become promising nanoparticles for a wide variety of biomedical applications. However, the major drawback of QDs is their potential toxicity. Here, we determined possible cytotoxic effects of a set of QDs by systematic photophysical evaluation in vitro as well as in vivo. QDs were synthesized by the hydrothermal aqueous route with sizes in the range of 2.0–3.5 nm. Cytotoxic effects of QDs were studied in the human pancreatic carcinoid cell line BON. Cadmium telluride QDs with or without zinc sulfide shell and coated with 3-mercaptopropionic acid (MPA) were highly cytotoxic even at nanomolar concentrations. Capping with L-glutathione (GSH) or thioglycolic acid (TGA) reduced the cytotoxicity of cadmium telluride QDs and cadmium selenide QDs. Determination of the toxicity of QDs revealed IC50 values in the micromolar range. In vivo studies showed good tolerability of CdSe QDs with ZnS shell and GSH capping. We could demonstrate that QDs with ZnS shell and GSH capping exhibit low toxicity and good tolerability in cell models and living organisms. These QDs appear to be promising candidates for biomedical applications such as drug delivery for enhanced chemotherapy or targeted delivery of light sensitive substances for photodynamic therapy.
- Full Text:
- Date Issued: 2014
Synthesis and evaluation of novel heterocycles as potential HIV-1 enzyme inhibitors
- Ngnie Tuemgnie, Gaëlle Tatiana
- Authors: Ngnie Tuemgnie, Gaëlle Tatiana
- Date: 2014
- Subjects: Heterocyclic compounds , Enzyme inhibitors , Organic compounds , Green chemistry , Coumarins , HIV (Viruses) Enzymes
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/194293 , vital:45440 , DOI https://doi.org/10.21504/10962/194293
- Description: This project has focussed on the synthesis and the evaluation of organic compounds as potential HIV-1 enzyme inhibitors, by making use of green chemistry (microwave assisted synthesis and click chemistry), palladium catalyzed reactions (Heck and Sonogashira coupling), Baylis Hillman methodology and aldol condensation. These compounds were synthesized in good yields and fully characterised by spectroscopic techniques. Biological assay data revealed that some of the compounds possess high inhibitory activity and their effective inhibitory concentration was as good as those of drugs in clinical use. These potential drug molecules were identified by preliminary investigations carried out by molecular modelling where a trend of their inhibitory activity against different enzymes was anticipated. Benzotriazole-AZT conjugates generated by 1,3-dipolar cycloaddition of anthranilic acid derivatives with AZT showed good inhibitory activity in silico against both HIV-1 protease (PR) and HIV-1 reverse transcriptase (RT) enzymes. Still in line with our dual action strategy, cinnamate ester-AZT conjugates were synthesized in three steps starting from benzaldehyde derivatives with a click reaction at the final step. These compounds also showed some inhibitory activity against HIV-1 RT enzyme (88%). In addition, the cinnamoyl fragment attached to AZT appeared to improve the activity of AZT against HIV-1 RT. Peptide chemistry involving carbonyl diimidazole as a coupling reagent between cinnamic acid derivatives and protected amino acids was used to prepare substituted amino acid derivatives which appeared to be very active against the integrase (IN) enzyme (88%). Commercially available coumarin was iodinated and derivatized through palladium catalyzed Heck and Sonogashira reactions with activated alkenes and a terminal alkyne respectively to afford novel coumarin derivatives in good yields. Optimization studies on the Heck reaction with regards to the phosphine ligand, the palladium catalyst and the solvent were carried out to afford novel formyl substituted cinnamate esters with nonaflyl salicylaldehyde derivatives. , Thesis (PhD) -- Faculty of Science, Chemistry, 2014
- Full Text:
- Date Issued: 2014
- Authors: Ngnie Tuemgnie, Gaëlle Tatiana
- Date: 2014
- Subjects: Heterocyclic compounds , Enzyme inhibitors , Organic compounds , Green chemistry , Coumarins , HIV (Viruses) Enzymes
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/194293 , vital:45440 , DOI https://doi.org/10.21504/10962/194293
- Description: This project has focussed on the synthesis and the evaluation of organic compounds as potential HIV-1 enzyme inhibitors, by making use of green chemistry (microwave assisted synthesis and click chemistry), palladium catalyzed reactions (Heck and Sonogashira coupling), Baylis Hillman methodology and aldol condensation. These compounds were synthesized in good yields and fully characterised by spectroscopic techniques. Biological assay data revealed that some of the compounds possess high inhibitory activity and their effective inhibitory concentration was as good as those of drugs in clinical use. These potential drug molecules were identified by preliminary investigations carried out by molecular modelling where a trend of their inhibitory activity against different enzymes was anticipated. Benzotriazole-AZT conjugates generated by 1,3-dipolar cycloaddition of anthranilic acid derivatives with AZT showed good inhibitory activity in silico against both HIV-1 protease (PR) and HIV-1 reverse transcriptase (RT) enzymes. Still in line with our dual action strategy, cinnamate ester-AZT conjugates were synthesized in three steps starting from benzaldehyde derivatives with a click reaction at the final step. These compounds also showed some inhibitory activity against HIV-1 RT enzyme (88%). In addition, the cinnamoyl fragment attached to AZT appeared to improve the activity of AZT against HIV-1 RT. Peptide chemistry involving carbonyl diimidazole as a coupling reagent between cinnamic acid derivatives and protected amino acids was used to prepare substituted amino acid derivatives which appeared to be very active against the integrase (IN) enzyme (88%). Commercially available coumarin was iodinated and derivatized through palladium catalyzed Heck and Sonogashira reactions with activated alkenes and a terminal alkyne respectively to afford novel coumarin derivatives in good yields. Optimization studies on the Heck reaction with regards to the phosphine ligand, the palladium catalyst and the solvent were carried out to afford novel formyl substituted cinnamate esters with nonaflyl salicylaldehyde derivatives. , Thesis (PhD) -- Faculty of Science, Chemistry, 2014
- Full Text:
- Date Issued: 2014
Synthesis of ytterbium bisphthalocyanines
- Sekhosana, Kutloana E, Nyokong, Tebello
- Authors: Sekhosana, Kutloana E , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189887 , vital:44943 , xlink:href="https://doi.org/10.1016/j.optmat.2014.05.013"
- Description: Herein we report on the syntheses, photophysico-chemical properties and nonlinear absorption parameters of bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-2-yloxy phthalocyaninato)} ytterbium (III) (3) and bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-4-yloxy phthalocyaninato)} ytterbium (III) (4). The fluorescence and singlet oxygen quantum yields obtained for complexes 3 and 4 are low. The triplet quantum yield obtained for complex 3 is high at ΦT = 0.89 whereas for complex 4 ΦT = 0.48. The third order optical susceptibility values are of the order: 10−11 esu (for complex 3), and 10−13 esu (for complex 4) while the hyperpolarizability values are of the order: 10−28 esu (for complex 3) and 10−31 esu (for complex 4). Complexes 3 and 4 show two-photon absorption coefficients of the order of 10−46 cm4 s/photon and 10−48 cm4 s/photon, and threshold intensities as low as 0.3 J cm−2 and 0.0045 J cm−2, respectively.
- Full Text:
- Date Issued: 2014
- Authors: Sekhosana, Kutloana E , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189887 , vital:44943 , xlink:href="https://doi.org/10.1016/j.optmat.2014.05.013"
- Description: Herein we report on the syntheses, photophysico-chemical properties and nonlinear absorption parameters of bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-2-yloxy phthalocyaninato)} ytterbium (III) (3) and bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-4-yloxy phthalocyaninato)} ytterbium (III) (4). The fluorescence and singlet oxygen quantum yields obtained for complexes 3 and 4 are low. The triplet quantum yield obtained for complex 3 is high at ΦT = 0.89 whereas for complex 4 ΦT = 0.48. The third order optical susceptibility values are of the order: 10−11 esu (for complex 3), and 10−13 esu (for complex 4) while the hyperpolarizability values are of the order: 10−28 esu (for complex 3) and 10−31 esu (for complex 4). Complexes 3 and 4 show two-photon absorption coefficients of the order of 10−46 cm4 s/photon and 10−48 cm4 s/photon, and threshold intensities as low as 0.3 J cm−2 and 0.0045 J cm−2, respectively.
- Full Text:
- Date Issued: 2014
Synthesis, characterization & comparative evaluation of photo-catalytic & antimicrobial activity of Ag2O and TiO2 immobilized on nanofibres for treatment
- Authors: Gxumisa, Xoliswa
- Date: 2014
- Subjects: Pollution http://id.loc.gov/authorities/subjects/sh85104530 , Titanium dioxide http://id.loc.gov/authorities/subjects/sh85135627 , Photocatalysis http://id.loc.gov/authorities/subjects/sh93001301
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/19545 , vital:43138
- Description: Water is a very essential substance for the existence of organisms and the environment where it functions as a transport medium for valuable chemicals, minerals, nutrients and also as a reaction medium. However, the remarkable water properties are not just limited to the dissolution of biological valuable substances, but also to harmful entities during pollution. This has led to research in the improvement and development of new techniques for water treatment. In this study, titanium dioxide (TiO2) and silver oxide (Ag2O) were prepared using the sol gel process and precipitation method respectively. The TiO2 was doped using a sol gel process with carbon and nitrogen so as to reduce the band gap. TiO2/Ag2O, N-TiO2/Ag2O and C-TiO2/Ag2O composites were also prepared using a precipitation method. The average particle size of prepared TiO2, C-TiO2, N-TiO2, Ag2O, TiO2/Ag2O, N-TiO2/Ag2O and CTiO2/Ag2O was found to be 13nm, 7nm, 10nm, 23nm, 28nm, 24nm and 21nm respectively as measured by TEM analysis. The photo-catalysts, Ag2O and TiO2 and their composites were immobilized on stabilized nanofibres using the electrospinning process to allow subsequent separation and reconciliation of the photo-catalyst after use in water treatment. The photocatalytic and antimicrobial activities of photo-catalysts were also evaluated using water contaminated with phenol red dye and Escherichia coli. The prepared materials were characterized by XRD, TEM, HRSEM, DRS, EDX, FT-IR, and TGA. Carbon was found to be more effective as a dopant than nitrogen. It reduced the band gap by 0.4 while nitrogen doping showed a reduction in band gap of 0.2 compared to undoped titanium dioxide. The doped TiO2 exhibited higher photo-catalytic and antimicrobial activity than the undoped TiO2. Introduction of Ag2O allowed utilization of visible light by the TiO2- Ag2O nano-composite leading to an improved rate of photo-degradation of phenol red and inactivation of E coli. Photo-catalytic properties showed that carbon doped materials have a higher photo-catalytic activity than nitrogen doped materials, while for antimicrobial v properties it is vice-versa. The immobilization of photo-catalysts on support material made it less effective towards the degradation of phenol red. The rate of photo-oxidation of phenol red was three times faster using powder TiO2 compared to immobilized TiO2. Therefore, this study suggests that photo-catalysis can be used as an effective method for water disinfection and production of potable and pathogen free drinking water even though better methods of immobilization should be sought. , Thesis (MSc) (Chemistry) -- University of Fort Hare, 2014
- Full Text:
- Date Issued: 2014
- Authors: Gxumisa, Xoliswa
- Date: 2014
- Subjects: Pollution http://id.loc.gov/authorities/subjects/sh85104530 , Titanium dioxide http://id.loc.gov/authorities/subjects/sh85135627 , Photocatalysis http://id.loc.gov/authorities/subjects/sh93001301
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/19545 , vital:43138
- Description: Water is a very essential substance for the existence of organisms and the environment where it functions as a transport medium for valuable chemicals, minerals, nutrients and also as a reaction medium. However, the remarkable water properties are not just limited to the dissolution of biological valuable substances, but also to harmful entities during pollution. This has led to research in the improvement and development of new techniques for water treatment. In this study, titanium dioxide (TiO2) and silver oxide (Ag2O) were prepared using the sol gel process and precipitation method respectively. The TiO2 was doped using a sol gel process with carbon and nitrogen so as to reduce the band gap. TiO2/Ag2O, N-TiO2/Ag2O and C-TiO2/Ag2O composites were also prepared using a precipitation method. The average particle size of prepared TiO2, C-TiO2, N-TiO2, Ag2O, TiO2/Ag2O, N-TiO2/Ag2O and CTiO2/Ag2O was found to be 13nm, 7nm, 10nm, 23nm, 28nm, 24nm and 21nm respectively as measured by TEM analysis. The photo-catalysts, Ag2O and TiO2 and their composites were immobilized on stabilized nanofibres using the electrospinning process to allow subsequent separation and reconciliation of the photo-catalyst after use in water treatment. The photocatalytic and antimicrobial activities of photo-catalysts were also evaluated using water contaminated with phenol red dye and Escherichia coli. The prepared materials were characterized by XRD, TEM, HRSEM, DRS, EDX, FT-IR, and TGA. Carbon was found to be more effective as a dopant than nitrogen. It reduced the band gap by 0.4 while nitrogen doping showed a reduction in band gap of 0.2 compared to undoped titanium dioxide. The doped TiO2 exhibited higher photo-catalytic and antimicrobial activity than the undoped TiO2. Introduction of Ag2O allowed utilization of visible light by the TiO2- Ag2O nano-composite leading to an improved rate of photo-degradation of phenol red and inactivation of E coli. Photo-catalytic properties showed that carbon doped materials have a higher photo-catalytic activity than nitrogen doped materials, while for antimicrobial v properties it is vice-versa. The immobilization of photo-catalysts on support material made it less effective towards the degradation of phenol red. The rate of photo-oxidation of phenol red was three times faster using powder TiO2 compared to immobilized TiO2. Therefore, this study suggests that photo-catalysis can be used as an effective method for water disinfection and production of potable and pathogen free drinking water even though better methods of immobilization should be sought. , Thesis (MSc) (Chemistry) -- University of Fort Hare, 2014
- Full Text:
- Date Issued: 2014
Synthesis, characterization and photodynamic therapy properties of an octa-4-tert-butylphenoxy-substituted phosphorus (V) triazatetrabenzcorrole
- Shi, Maohu, Tian, Jiangwei, Mkhize, Colin, Kubheka, Gugu, Zhou, Jinfeng, Mack, John, Nyokong, Tebello, Shen, Zhen
- Authors: Shi, Maohu , Tian, Jiangwei , Mkhize, Colin , Kubheka, Gugu , Zhou, Jinfeng , Mack, John , Nyokong, Tebello , Shen, Zhen
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241494 , vital:50944 , xlink:href="https://doi.org/10.1142/S1088424614500436"
- Description: A novel octa-4-tert-butylphenoxy-substituted phosphorus(V) triazatetrabenzcorrole (PVTBC), has been synthesized and characterized by MALDI-TOF MS and NMR, FT-IR and MCD spectroscopy. The fluorescence emission spectrum was used to determine the fluorescence quantum yield and the quantum yield for singlet oxygen generation was calculated by using 1,3-diphenylisobenzofuran as a scavenger. The photocytoxicity against U87MG cells was measured. The results indicated that PVTBC is potentially useful as an NIR region photosensitizer for photodynamic therapy (PDT).
- Full Text:
- Date Issued: 2014
- Authors: Shi, Maohu , Tian, Jiangwei , Mkhize, Colin , Kubheka, Gugu , Zhou, Jinfeng , Mack, John , Nyokong, Tebello , Shen, Zhen
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241494 , vital:50944 , xlink:href="https://doi.org/10.1142/S1088424614500436"
- Description: A novel octa-4-tert-butylphenoxy-substituted phosphorus(V) triazatetrabenzcorrole (PVTBC), has been synthesized and characterized by MALDI-TOF MS and NMR, FT-IR and MCD spectroscopy. The fluorescence emission spectrum was used to determine the fluorescence quantum yield and the quantum yield for singlet oxygen generation was calculated by using 1,3-diphenylisobenzofuran as a scavenger. The photocytoxicity against U87MG cells was measured. The results indicated that PVTBC is potentially useful as an NIR region photosensitizer for photodynamic therapy (PDT).
- Full Text:
- Date Issued: 2014
Synthesis, photophysicochemical properties and TD-DFT calculations of tetrakis (2-benzoyl-4-chlorophenoxy) phthalocyanines
- Yilmaz, Yusuf, Mack, John, Sener, M Kasim, Sönmez, Mehmet, Nyokong, Tebello
- Authors: Yilmaz, Yusuf , Mack, John , Sener, M Kasim , Sönmez, Mehmet , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241538 , vital:50948 , xlink:href="https://doi.org/10.1142/S1088424614500047"
- Description: The synthesis of metal free, magnesium and zinc tetrakis(2-benzoyl-4-chlorophenoxy) phthalocyanine derivatives (2–4) is described along with their characterization by elemental analysis, IR, UV-visible absorption, and 1H NMR spectroscopy and mass spectrometry. Trends observed in the fluorescence, triplet state, singlet oxygen and photodegradation quantum yields and the triplet state lifetimes are also analyzed. The compounds exhibit high solubility in a wide range of organic solvents and no evidence of aggregation was observed over a wide concentration range. The Zn(II) complex (4) was found to have a very high singlet oxygen quantum yield (ΦΔ = 0.78) in dimethylsulfoxide (DMSO) and a reasonably large triplet state quantum yield (ΦT = 0.82). The photophysical and photochemical properties clearly demonstrate that these compounds could prove useful in singlet oxygen applications such as photodynamic therapy (PDT). DFT and TD-DFT calculations were used to assess the impact of the positional isomerism of the 2-benzoyl-4-chlorophenoxy substituents on the electronic structures and optical spectroscopy.
- Full Text:
- Date Issued: 2014
- Authors: Yilmaz, Yusuf , Mack, John , Sener, M Kasim , Sönmez, Mehmet , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241538 , vital:50948 , xlink:href="https://doi.org/10.1142/S1088424614500047"
- Description: The synthesis of metal free, magnesium and zinc tetrakis(2-benzoyl-4-chlorophenoxy) phthalocyanine derivatives (2–4) is described along with their characterization by elemental analysis, IR, UV-visible absorption, and 1H NMR spectroscopy and mass spectrometry. Trends observed in the fluorescence, triplet state, singlet oxygen and photodegradation quantum yields and the triplet state lifetimes are also analyzed. The compounds exhibit high solubility in a wide range of organic solvents and no evidence of aggregation was observed over a wide concentration range. The Zn(II) complex (4) was found to have a very high singlet oxygen quantum yield (ΦΔ = 0.78) in dimethylsulfoxide (DMSO) and a reasonably large triplet state quantum yield (ΦT = 0.82). The photophysical and photochemical properties clearly demonstrate that these compounds could prove useful in singlet oxygen applications such as photodynamic therapy (PDT). DFT and TD-DFT calculations were used to assess the impact of the positional isomerism of the 2-benzoyl-4-chlorophenoxy substituents on the electronic structures and optical spectroscopy.
- Full Text:
- Date Issued: 2014
Tapping into the World of Terpenoids
- Authors: Oyedeji, A O
- Date: 2014
- Subjects: Terpenoids , Terpenes , Medicinal plants -- Analysis
- Language: English
- Type: text , Lectures
- Identifier: http://hdl.handle.net/11260/1111 , vital:30607
- Description: Terpenes are a class of secondary metabolites found in plants and insects (such as termites or swallowtail butterflies). Terpenes are strong-smelling aromatic hydrocarbon which are used by plants/ insects to protect themselves by deterring parasites. They are secondary metabolites synthesized in plants. When a hydrogen or atoms of hydrogen, are replaced by other atoms such as oxygen, in a terpene compound, the terpene becomes a terpenoid (also known as isoprenoids). Terpenoids are a large and diverse class of naturally occurring organic chemicals, derived from five-carbon isoprene units assembled and modified in thousands of ways. They are multicyclic structures that differ from one another not only in functional group but also in their basic carbon skeletons. Terpenoids are found in all classes of living things, and are the largest group of natural products.
- Full Text:
- Date Issued: 2014
- Authors: Oyedeji, A O
- Date: 2014
- Subjects: Terpenoids , Terpenes , Medicinal plants -- Analysis
- Language: English
- Type: text , Lectures
- Identifier: http://hdl.handle.net/11260/1111 , vital:30607
- Description: Terpenes are a class of secondary metabolites found in plants and insects (such as termites or swallowtail butterflies). Terpenes are strong-smelling aromatic hydrocarbon which are used by plants/ insects to protect themselves by deterring parasites. They are secondary metabolites synthesized in plants. When a hydrogen or atoms of hydrogen, are replaced by other atoms such as oxygen, in a terpene compound, the terpene becomes a terpenoid (also known as isoprenoids). Terpenoids are a large and diverse class of naturally occurring organic chemicals, derived from five-carbon isoprene units assembled and modified in thousands of ways. They are multicyclic structures that differ from one another not only in functional group but also in their basic carbon skeletons. Terpenoids are found in all classes of living things, and are the largest group of natural products.
- Full Text:
- Date Issued: 2014
Teaching in higher education
- Authors: Quinn, Lynn
- Date: 2014
- Language: English
- Type: text , review
- Identifier: http://hdl.handle.net/10962/66557 , vital:28963 , https://doi.org/10.1080/1360144X.2014.908094
- Description: publisher version , As Becker and Denicolo point out in their introduction, traditionally most lecturers in higher education begin teaching with little or no formal training: ‘It is assumed if you were expert in your field you would be able, by some ill-defined means, to teach others’ (p. 1). This book aims to remedy that situation and does exactly what it sets out to do: it provides a useful, step-by-step training guide for teachers in higher education. It provides much needed advice for new academics for ways in which they can successfully combine their teaching and their research roles. It is written in an accessible style, draws on the experiences of people who have taught in higher education for some time, and provides practical advice for teaching in a range of contexts and for dealing with different challenges that may arise.
- Full Text: false
- Date Issued: 2014
- Authors: Quinn, Lynn
- Date: 2014
- Language: English
- Type: text , review
- Identifier: http://hdl.handle.net/10962/66557 , vital:28963 , https://doi.org/10.1080/1360144X.2014.908094
- Description: publisher version , As Becker and Denicolo point out in their introduction, traditionally most lecturers in higher education begin teaching with little or no formal training: ‘It is assumed if you were expert in your field you would be able, by some ill-defined means, to teach others’ (p. 1). This book aims to remedy that situation and does exactly what it sets out to do: it provides a useful, step-by-step training guide for teachers in higher education. It provides much needed advice for new academics for ways in which they can successfully combine their teaching and their research roles. It is written in an accessible style, draws on the experiences of people who have taught in higher education for some time, and provides practical advice for teaching in a range of contexts and for dealing with different challenges that may arise.
- Full Text: false
- Date Issued: 2014
Temporal and spatial variability in the abundance, biomass and distribution of Palaemon peringueyi (Decapoda: Crustacea) are influenced by biological but not physico-chemical factors in the permanently open Kariega Estuary, South Africa
- Nyalungu, Nonhlanhla P, Hodgson, Alan N, Froneman, P William, Dopolo, M, Masubelele, M
- Authors: Nyalungu, Nonhlanhla P , Hodgson, Alan N , Froneman, P William , Dopolo, M , Masubelele, M
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68106 , vital:29200 , https://doi.org/10.2989/16085914.2014.960792
- Description: Publisher version , Biological and physico-chemical factors affecting abundance and biomass of shrimp Palaemon peringueyi were investigated in 2010–2011 in the lower, middle and upper reaches of the freshwater-deprived permanently open Kariega Estuary. Shrimp abundance and biomass ranged from 0 to 88 ind. m−2 and 0 to 4.4 g wwt m−2, respectively. Shrimps were most abundant in the lower reach, and highest abundances and biomasses were recorded in the lower reach in June when salinities were low. The shrimps were almost always absent in the upper reach. Juveniles were found mostly in the lower and middle reaches, whereas adults were distributed in all three reaches. Regression analyses showed no statistically significant relationship for either abundance or biomass of the shrimps with temperature, salinity and dissolved oxygen (p > 0.05). The relationship between shrimp abundance and biomass and vegetation cover was positive and statistically significant (R2 = 0.109 and 0.185, respectively; p < 0.05). Vegetation cover plays an important role in determining the presence, distribution and abundance or biomass of P. peringueyi in this estuary.
- Full Text: false
- Date Issued: 2014
- Authors: Nyalungu, Nonhlanhla P , Hodgson, Alan N , Froneman, P William , Dopolo, M , Masubelele, M
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68106 , vital:29200 , https://doi.org/10.2989/16085914.2014.960792
- Description: Publisher version , Biological and physico-chemical factors affecting abundance and biomass of shrimp Palaemon peringueyi were investigated in 2010–2011 in the lower, middle and upper reaches of the freshwater-deprived permanently open Kariega Estuary. Shrimp abundance and biomass ranged from 0 to 88 ind. m−2 and 0 to 4.4 g wwt m−2, respectively. Shrimps were most abundant in the lower reach, and highest abundances and biomasses were recorded in the lower reach in June when salinities were low. The shrimps were almost always absent in the upper reach. Juveniles were found mostly in the lower and middle reaches, whereas adults were distributed in all three reaches. Regression analyses showed no statistically significant relationship for either abundance or biomass of the shrimps with temperature, salinity and dissolved oxygen (p > 0.05). The relationship between shrimp abundance and biomass and vegetation cover was positive and statistically significant (R2 = 0.109 and 0.185, respectively; p < 0.05). Vegetation cover plays an important role in determining the presence, distribution and abundance or biomass of P. peringueyi in this estuary.
- Full Text: false
- Date Issued: 2014
Testing antivirus engines to determine their effectiveness as a security layer
- Haffejee, Jameel, Irwin, Barry V W
- Authors: Haffejee, Jameel , Irwin, Barry V W
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429673 , vital:72631 , 10.1109/ISSA.2014.6950496
- Description: This research has been undertaken to empirically test the assumption that it is trivial to bypass an antivirus application and to gauge the effectiveness of antivirus engines when faced with a number of known evasion techniques. A known malicious binary was combined with evasion techniques and deployed against several antivirus engines to test their detection ability. The research also documents the process of setting up an environment for testing antivirus engines as well as building the evasion techniques used in the tests. This environment facilitated the empirical testing that was needed to determine if the assumption that antivirus security controls could easily be bypassed. The results of the empirical tests are also presented in this research and demonstrate that it is indeed within reason that an attacker can evade multiple antivirus engines without much effort. As such while an antivirus application is useful for protecting against known threats, it does not work as effectively against unknown threats.
- Full Text:
- Date Issued: 2014
- Authors: Haffejee, Jameel , Irwin, Barry V W
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429673 , vital:72631 , 10.1109/ISSA.2014.6950496
- Description: This research has been undertaken to empirically test the assumption that it is trivial to bypass an antivirus application and to gauge the effectiveness of antivirus engines when faced with a number of known evasion techniques. A known malicious binary was combined with evasion techniques and deployed against several antivirus engines to test their detection ability. The research also documents the process of setting up an environment for testing antivirus engines as well as building the evasion techniques used in the tests. This environment facilitated the empirical testing that was needed to determine if the assumption that antivirus security controls could easily be bypassed. The results of the empirical tests are also presented in this research and demonstrate that it is indeed within reason that an attacker can evade multiple antivirus engines without much effort. As such while an antivirus application is useful for protecting against known threats, it does not work as effectively against unknown threats.
- Full Text:
- Date Issued: 2014
Thaumatotibia leucotreta and the Navel orange: ovipositional preferences and host susceptibility
- Love, C N, Hill, Martin P, Moore, Sean D
- Authors: Love, C N , Hill, Martin P , Moore, Sean D
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/423811 , vital:72095 , xlink:href="https://doi.org/10.1111/jen.12126"
- Description: False codling moth, Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae), presents a significant threat to the South African citrus industry. To limit income loss due to direct larval damage or from fruit rejection due to the phytosanitary status of this pest, additional pre-harvest control techniques are required for Navel oranges, which are known to be susceptible to T.leucotreta damage. A number of Navel orange cultivars have been developed, and differences in female T. leucotretaovi positional preference and susceptibility of cultivars to larval penetration are known to exist. Navel orange cultivars were grouped according to time of maturity (early, mid- and late season). Female T.leucotreta were subjected to choice and no-choice tests with these cultivars, measured by oviposition. Host susceptibility was tested by allowing neonate T. leucotreta larvae to penetrate the different Navel cultivars. In the early maturing group, Fischer Navels were least preferred for oviposition and the least susceptible to larval penetration. The mid- and late season maturing groupings showed limited differences in oviposition preference, although host susceptibility did appear to be an important factor in assessing the vulnerability of fruit to T. leucotreta. Despite being widely planted in South Africa, the mid-season Palmer Navels were highly susceptible to larval penetration, while for the late season cultivars, Cambria and Glen Ora Late were the least susceptible to T. leucotreta. As a result of these laboratory trials, it is recommended that farmers increase cultivation of Fischer Navels as the principal early season cultivar, avoid Palmer Navels in favour of other mid-season maturing cultivars and give preference to the late maturing Cambria and Glen Ora Late cultivars, to limit T. Leucotreta damage.
- Full Text:
- Date Issued: 2014
- Authors: Love, C N , Hill, Martin P , Moore, Sean D
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/423811 , vital:72095 , xlink:href="https://doi.org/10.1111/jen.12126"
- Description: False codling moth, Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae), presents a significant threat to the South African citrus industry. To limit income loss due to direct larval damage or from fruit rejection due to the phytosanitary status of this pest, additional pre-harvest control techniques are required for Navel oranges, which are known to be susceptible to T.leucotreta damage. A number of Navel orange cultivars have been developed, and differences in female T. leucotretaovi positional preference and susceptibility of cultivars to larval penetration are known to exist. Navel orange cultivars were grouped according to time of maturity (early, mid- and late season). Female T.leucotreta were subjected to choice and no-choice tests with these cultivars, measured by oviposition. Host susceptibility was tested by allowing neonate T. leucotreta larvae to penetrate the different Navel cultivars. In the early maturing group, Fischer Navels were least preferred for oviposition and the least susceptible to larval penetration. The mid- and late season maturing groupings showed limited differences in oviposition preference, although host susceptibility did appear to be an important factor in assessing the vulnerability of fruit to T. leucotreta. Despite being widely planted in South Africa, the mid-season Palmer Navels were highly susceptible to larval penetration, while for the late season cultivars, Cambria and Glen Ora Late were the least susceptible to T. leucotreta. As a result of these laboratory trials, it is recommended that farmers increase cultivation of Fischer Navels as the principal early season cultivar, avoid Palmer Navels in favour of other mid-season maturing cultivars and give preference to the late maturing Cambria and Glen Ora Late cultivars, to limit T. Leucotreta damage.
- Full Text:
- Date Issued: 2014
The "old-new" challenges of water, sanitation and bioremediation in developing countries
- Authors: Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75982 , vital:30489 , DOI: 10.4172/2155-6199.1000e152
- Description: Developing countries face challenges in the development of infrastructure and population growth. These lead to “side-effects" such as uncontrolled urbanization and the fact that basic services such as water and sanitation are lagging behind the actual needs on the ground. Historical challenges, lack of skilled staff and often lack of sustained funding are some of the reasons for the status quo. Extent of water and sanitation coverage often forces national and local governments to install the minimum-standard solutions, e.g. the ventilated improved pit latrines. This improves the public health status in the short-term, but causes problem in the long run due to the lack of regular maintenance such as through lack emptying of pits. Sometimes, construction of these facilities is of inferior standard. Pits are often built without lining or zero consideration is given to the local conditions in terms of soil properties, water table and the number of toilet users.
- Full Text:
- Date Issued: 2014
- Authors: Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75982 , vital:30489 , DOI: 10.4172/2155-6199.1000e152
- Description: Developing countries face challenges in the development of infrastructure and population growth. These lead to “side-effects" such as uncontrolled urbanization and the fact that basic services such as water and sanitation are lagging behind the actual needs on the ground. Historical challenges, lack of skilled staff and often lack of sustained funding are some of the reasons for the status quo. Extent of water and sanitation coverage often forces national and local governments to install the minimum-standard solutions, e.g. the ventilated improved pit latrines. This improves the public health status in the short-term, but causes problem in the long run due to the lack of regular maintenance such as through lack emptying of pits. Sometimes, construction of these facilities is of inferior standard. Pits are often built without lining or zero consideration is given to the local conditions in terms of soil properties, water table and the number of toilet users.
- Full Text:
- Date Issued: 2014
The (in)significance of the common law? Constitutional interpretation and the Mansingh judgments
- Authors: Krüger, Rósaan
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68900 , vital:29337 , https://hdl.handle.net/10520/EJC155168
- Description: Publisher version , The law reports abound with case law on the interpretation of the provisions in the Bill of Rights. Cases on the interpretation of constitutional provisions that fall outside of the Bill of Rights are, by contrast, few and far between. (A few prominent examples are S v Mhlungu 1995 (3) SA 867 (CC); President of the Republic of South Africa v South African Rugby Football Union 2000 (1) SA 1 (CC) ('SARFU'); Matatiele Municipality v President of the Republic of South Africa 2006 (5) SA 47 (CC); Doctors for Life International v Speaker of the National Assembly 2006 (6) SA 416 (CC); Merafong Demarcation Forum v President of the Republic of South Africa 2008 (5) SA171 (CC); Chonco v President of the Republic of South Africa 2010 (6) BCLR 511 (CC); Albutt v Centre for the Study of Violence and Reconciliation 2010 (3) SA 293 (CC).) Mansingh's April 2011 application to the North Gauteng High Court was one of these unusual cases.
- Full Text: false
- Date Issued: 2014
- Authors: Krüger, Rósaan
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68900 , vital:29337 , https://hdl.handle.net/10520/EJC155168
- Description: Publisher version , The law reports abound with case law on the interpretation of the provisions in the Bill of Rights. Cases on the interpretation of constitutional provisions that fall outside of the Bill of Rights are, by contrast, few and far between. (A few prominent examples are S v Mhlungu 1995 (3) SA 867 (CC); President of the Republic of South Africa v South African Rugby Football Union 2000 (1) SA 1 (CC) ('SARFU'); Matatiele Municipality v President of the Republic of South Africa 2006 (5) SA 47 (CC); Doctors for Life International v Speaker of the National Assembly 2006 (6) SA 416 (CC); Merafong Demarcation Forum v President of the Republic of South Africa 2008 (5) SA171 (CC); Chonco v President of the Republic of South Africa 2010 (6) BCLR 511 (CC); Albutt v Centre for the Study of Violence and Reconciliation 2010 (3) SA 293 (CC).) Mansingh's April 2011 application to the North Gauteng High Court was one of these unusual cases.
- Full Text: false
- Date Issued: 2014
The challenges of re-skilling former prison inmates in the 21st century: a case study of Nkonkobe municipality, Eastern Cape - South Africa
- Authors: Ralasi, Nolusindiso
- Date: 2014
- Subjects: Criminals -- Rehabilitation , Prisoners -- Education , Alternatives to imprisonment
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10353/25687 , vital:64432
- Description: The main aim of this study is to investigate challenges of re-skilling former inmates in South Africa in the 21st century. This is a case study of the Nkonkobe Municipality, Eastern Cape - South Africa. The objectives of this research are: to identify the current skills and education programmes offered by the DCS, to establish perceptions of inmates regarding the role of the DCS in skills training and education, to find out whether the current former inmates feel the support of society, to ascertain the offenders’ education levels, professional skills and job experience before and after prison, to identify the status of the offenders’ rights and rehabilitation programmes, to provide recommendations on ways to cement policy loopholes that have a deleterious effect on the government’s drive to create a whole new world for the ex-inmates and their holding communities. A qualitative research design was used to collect data from the participants in order to obtain in-depth information concerning the perceived impact of the life skills programmes on the behaviour and conduct of former inmates who participated in the programme. The findings reveal that the life skills programmes had an impact on the behaviour of former inmates because the life skills that they had gained from the programme mostly helped them desist from committing the offences that they used to commit. The life skills also curbed their anti-social behaviour tendencies. The factors that contributed to the success of the project included the approaches that the facilitators used to run the project, such as, motivating the inmates in everything that they did and the cooperation between the facilitators, the prison and the community. The findings also reveal that the good team work that occurred between the former inmates, support from the community, as well as the support from the Department of Correctional Services contributed to the success of the project. It was also suggested that the project should include all youths in the community; imprisonment should not be a passport to empowerment. The final suggestion was that the project should include all stakeholders in the community. The life skills projects should target unemployed youths in the communities so that they can gain skills that can help them become self-employed. The study also recommends that the life skills programmes should be implemented in all prisons in South Africa to provide inmates with life skills that can help them face day-to-day life challenges. This study culminates in the realisation that no life skills programmes can be successful in any society if they exclude the core social members who are law-abiding citizens. This is key to ensure that these programmes do not polarise the society due to empowerment being erroneously viewed as a preserve of those who did not abide by societal laws. This would set a wrong precedence that this study seeks to forestall. , Thesis (MSoc) -- Faculty of Social Sciences and Humanities, 2014
- Full Text:
- Date Issued: 2014
- Authors: Ralasi, Nolusindiso
- Date: 2014
- Subjects: Criminals -- Rehabilitation , Prisoners -- Education , Alternatives to imprisonment
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10353/25687 , vital:64432
- Description: The main aim of this study is to investigate challenges of re-skilling former inmates in South Africa in the 21st century. This is a case study of the Nkonkobe Municipality, Eastern Cape - South Africa. The objectives of this research are: to identify the current skills and education programmes offered by the DCS, to establish perceptions of inmates regarding the role of the DCS in skills training and education, to find out whether the current former inmates feel the support of society, to ascertain the offenders’ education levels, professional skills and job experience before and after prison, to identify the status of the offenders’ rights and rehabilitation programmes, to provide recommendations on ways to cement policy loopholes that have a deleterious effect on the government’s drive to create a whole new world for the ex-inmates and their holding communities. A qualitative research design was used to collect data from the participants in order to obtain in-depth information concerning the perceived impact of the life skills programmes on the behaviour and conduct of former inmates who participated in the programme. The findings reveal that the life skills programmes had an impact on the behaviour of former inmates because the life skills that they had gained from the programme mostly helped them desist from committing the offences that they used to commit. The life skills also curbed their anti-social behaviour tendencies. The factors that contributed to the success of the project included the approaches that the facilitators used to run the project, such as, motivating the inmates in everything that they did and the cooperation between the facilitators, the prison and the community. The findings also reveal that the good team work that occurred between the former inmates, support from the community, as well as the support from the Department of Correctional Services contributed to the success of the project. It was also suggested that the project should include all youths in the community; imprisonment should not be a passport to empowerment. The final suggestion was that the project should include all stakeholders in the community. The life skills projects should target unemployed youths in the communities so that they can gain skills that can help them become self-employed. The study also recommends that the life skills programmes should be implemented in all prisons in South Africa to provide inmates with life skills that can help them face day-to-day life challenges. This study culminates in the realisation that no life skills programmes can be successful in any society if they exclude the core social members who are law-abiding citizens. This is key to ensure that these programmes do not polarise the society due to empowerment being erroneously viewed as a preserve of those who did not abide by societal laws. This would set a wrong precedence that this study seeks to forestall. , Thesis (MSoc) -- Faculty of Social Sciences and Humanities, 2014
- Full Text:
- Date Issued: 2014
The characterization of DNAJC3: elucidating the function of the TPR domains
- Mutsvunguma, Lorraine Zvichapera
- Authors: Mutsvunguma, Lorraine Zvichapera
- Date: 2014
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/55874 , vital:26751
- Description: DNAJC3 is a novel member of the DNAJ family with two domains linked to co-chaperone functions, namely the tetratricopeptide repeat (TPR) and J domain. Out of the two domains, the TPR domains are the least characterized. Therefore, the aim of this study was to characterize and elucidate additional functions of DNAJC3 TPR domains through in silico, in vitro and ex vivo approaches. Through multiple sequence and structural alignment as well as electrostatic potential analysis, DNAJC3 TPR domain were found to be most similar to TPR-containing proteins with Hsp90 or Hsp70 independent functions. In vitro pull down assays illustrated that DNAJC3 TPR domains did not interact with either cytosolic Hsp90 and Hsp70 or Grp78 and Grp94 directly, however a potential indirect interaction with Grp94 and Hsp90 was observed in mammalian lysates, via pull down assays; suggesting the formation of a complex between the proteins mediated by a specific substrate. DNAJC3 TPR domains were found to bind indiscriminately to both native and heat denatured substrates in a dose dependent manner. DNAJC3 TPR domains bound to β-galactosidase with greater affinity than malate dehydrogenase (MDH), suggesting that DNAJC3 TPR domains might exhibit substrate specificity that has not been reported before. Preliminary ex vivo analysis of DNAJC3 in mammalian cells showed that induced stress conditions did not alter the cytosolic or endoplasmic reticulum (ER) localization, or levels of DNAJC3 protein, suggesting that the protein is not stress inducible. However, protein levels of DNAJC3 were dramatically reduced by Hsp90 inhibitor novobiocin at 500 μM. Transient knockdown DNAJC3 did not change the protein levels of either Grp78 or Grp94, but decreased the protein levels of Hsp70/Hsp90 organizing protein HOP. On the other hand, protein levels of DNAJC3 were increased in HOP depleted cells. In conclusion, this study was the first to experimentally demonstrate that DNAJC3 TPR domains do not interact directly with Hsp90, Hsp70, Grp78 or Grp94, and therefore DNAJC3 is unlikely to participate in traditional co-chaperone interactions with those proteins via its TPR domain. However, the J domain is known to interact with Grp78. The discovery that DNAJC3 TPR domains resemble that of TPR-containing proteins with functions independent of Hsp90 or Hsp70 suggests that DNAJC3 might link the Hsp70/Grp78 chaperone machinery to non co-chaperone related functions, which requires further analysis.
- Full Text:
- Date Issued: 2014
- Authors: Mutsvunguma, Lorraine Zvichapera
- Date: 2014
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/55874 , vital:26751
- Description: DNAJC3 is a novel member of the DNAJ family with two domains linked to co-chaperone functions, namely the tetratricopeptide repeat (TPR) and J domain. Out of the two domains, the TPR domains are the least characterized. Therefore, the aim of this study was to characterize and elucidate additional functions of DNAJC3 TPR domains through in silico, in vitro and ex vivo approaches. Through multiple sequence and structural alignment as well as electrostatic potential analysis, DNAJC3 TPR domain were found to be most similar to TPR-containing proteins with Hsp90 or Hsp70 independent functions. In vitro pull down assays illustrated that DNAJC3 TPR domains did not interact with either cytosolic Hsp90 and Hsp70 or Grp78 and Grp94 directly, however a potential indirect interaction with Grp94 and Hsp90 was observed in mammalian lysates, via pull down assays; suggesting the formation of a complex between the proteins mediated by a specific substrate. DNAJC3 TPR domains were found to bind indiscriminately to both native and heat denatured substrates in a dose dependent manner. DNAJC3 TPR domains bound to β-galactosidase with greater affinity than malate dehydrogenase (MDH), suggesting that DNAJC3 TPR domains might exhibit substrate specificity that has not been reported before. Preliminary ex vivo analysis of DNAJC3 in mammalian cells showed that induced stress conditions did not alter the cytosolic or endoplasmic reticulum (ER) localization, or levels of DNAJC3 protein, suggesting that the protein is not stress inducible. However, protein levels of DNAJC3 were dramatically reduced by Hsp90 inhibitor novobiocin at 500 μM. Transient knockdown DNAJC3 did not change the protein levels of either Grp78 or Grp94, but decreased the protein levels of Hsp70/Hsp90 organizing protein HOP. On the other hand, protein levels of DNAJC3 were increased in HOP depleted cells. In conclusion, this study was the first to experimentally demonstrate that DNAJC3 TPR domains do not interact directly with Hsp90, Hsp70, Grp78 or Grp94, and therefore DNAJC3 is unlikely to participate in traditional co-chaperone interactions with those proteins via its TPR domain. However, the J domain is known to interact with Grp78. The discovery that DNAJC3 TPR domains resemble that of TPR-containing proteins with functions independent of Hsp90 or Hsp70 suggests that DNAJC3 might link the Hsp70/Grp78 chaperone machinery to non co-chaperone related functions, which requires further analysis.
- Full Text:
- Date Issued: 2014
The comparative growth rates of indigenous street and garden trees in Grahamstown, South Africa
- De Lacy, Peter J G, Shackleton, Charlie M
- Authors: De Lacy, Peter J G , Shackleton, Charlie M
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180943 , vital:43672 , xlink:href="https://doi.org/10.1016/j.sajb.2014.02.007"
- Description: Urban forestry is advocated worldwide as a means of enhancing the liveability of towns and cities, and mitigating some of the anticipated impacts of climate change. Optimisation of the benefits of trees in urban areas is dependent upon knowledge of tree form, growth, and the products and benefits that trees provide. Growth rates are a vital variable for modelling benefits, yet there is a significant gap in knowledge pertaining to growth rates of trees in urban areas, especially indigenous species in developing world countries. Here we report on growth rates of indigenous street and garden trees in Grahamstown, South Africa, using two approaches; tree ring counts on increment cores and mean rates from trees of known planting age. Growth equations for both street and garden trees were derived. There was no significant difference in mean growth rates determined via the two methods. For both methods street trees grew approximately 30% slower than trees in gardens.
- Full Text:
- Date Issued: 2014
- Authors: De Lacy, Peter J G , Shackleton, Charlie M
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180943 , vital:43672 , xlink:href="https://doi.org/10.1016/j.sajb.2014.02.007"
- Description: Urban forestry is advocated worldwide as a means of enhancing the liveability of towns and cities, and mitigating some of the anticipated impacts of climate change. Optimisation of the benefits of trees in urban areas is dependent upon knowledge of tree form, growth, and the products and benefits that trees provide. Growth rates are a vital variable for modelling benefits, yet there is a significant gap in knowledge pertaining to growth rates of trees in urban areas, especially indigenous species in developing world countries. Here we report on growth rates of indigenous street and garden trees in Grahamstown, South Africa, using two approaches; tree ring counts on increment cores and mean rates from trees of known planting age. Growth equations for both street and garden trees were derived. There was no significant difference in mean growth rates determined via the two methods. For both methods street trees grew approximately 30% slower than trees in gardens.
- Full Text:
- Date Issued: 2014
The diet of the calanoid copepod, Pseudodiaptomus hessei, in a permanently open southern African estuary inferred from fatty acid analyses
- Noyon, Margaux, Froneman, P William
- Authors: Noyon, Margaux , Froneman, P William
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/70901 , vital:29758 , https://doi.org/10.1093/plankt/fbu037
- Description: The fatty acid (FA) composition of Pseudodiaptomus hessei, one of the most abundant copepod species in southern African estuaries and lakes, reveals potential food selectivity and the importance of flagellate prey in their diets. Differences in FA profiles between males and females were recorded; however, none of these patterns matched the reproductive activities of the copepod. Our findings stress the importance of improving our knowledge of FA biosynthesis pathways to employ fatty acids as trophic markers in feeding studies of zooplankton in temperate environments.
- Full Text:
- Date Issued: 2014
- Authors: Noyon, Margaux , Froneman, P William
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/70901 , vital:29758 , https://doi.org/10.1093/plankt/fbu037
- Description: The fatty acid (FA) composition of Pseudodiaptomus hessei, one of the most abundant copepod species in southern African estuaries and lakes, reveals potential food selectivity and the importance of flagellate prey in their diets. Differences in FA profiles between males and females were recorded; however, none of these patterns matched the reproductive activities of the copepod. Our findings stress the importance of improving our knowledge of FA biosynthesis pathways to employ fatty acids as trophic markers in feeding studies of zooplankton in temperate environments.
- Full Text:
- Date Issued: 2014
The effect of sap-sucking by Falconia intermedia (Hemiptera: Miridae) on the emission of volatile organic compounds from the leaves of Lantana camara varieties
- Heshula, Lelethu U, Hill, Martin P
- Authors: Heshula, Lelethu U , Hill, Martin P
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/406141 , vital:70242 , xlink:href="https://hdl.handle.net/10520/EJC150957"
- Description: Evidence from more than 100 plant species has confirmed that plants emit volatile organic chemicals (VOC) in response to herbivory (Karban and Baldwin 1997; Dicke et al. 2003; Arimura et al. 2005). Feeding-induced plant responses may result in higher levels of volatiles, and different bouquets of compounds being emitted by plants following herbivore damage (Wei et al. 2006). The emission of volatile chemicals may be beneficial to plants in two ways; undamaged plants may interpret the chemical signals from damaged plants and in turn prime themselves for defence (Arimura et al. 2000; Dicke et al. 2003; Agrawal 2005), or volatiles emitted by damaged plants may attract natural enemies of the herbivores, which may reduce further damage to the plants (Tumlinson et al. 1993; De Moraes et al. 1998; Dicke and Vet 1999).
- Full Text:
- Date Issued: 2014
- Authors: Heshula, Lelethu U , Hill, Martin P
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/406141 , vital:70242 , xlink:href="https://hdl.handle.net/10520/EJC150957"
- Description: Evidence from more than 100 plant species has confirmed that plants emit volatile organic chemicals (VOC) in response to herbivory (Karban and Baldwin 1997; Dicke et al. 2003; Arimura et al. 2005). Feeding-induced plant responses may result in higher levels of volatiles, and different bouquets of compounds being emitted by plants following herbivore damage (Wei et al. 2006). The emission of volatile chemicals may be beneficial to plants in two ways; undamaged plants may interpret the chemical signals from damaged plants and in turn prime themselves for defence (Arimura et al. 2000; Dicke et al. 2003; Agrawal 2005), or volatiles emitted by damaged plants may attract natural enemies of the herbivores, which may reduce further damage to the plants (Tumlinson et al. 1993; De Moraes et al. 1998; Dicke and Vet 1999).
- Full Text:
- Date Issued: 2014
The effects of extracellular and intracellular Hop on cell migration processes
- Authors: Contu, Lara
- Date: 2014
- Subjects: Heat shock proteins , Metastasis , Cancer Chemotherapy , Molecular chaperones , Cell migration
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/193961 , vital:45410
- Description: The Hsp70/Hsp90-organising protein (Hop) is a 60 kDa co-chaperone that acts as an adaptor molecule, facilitating the transfer of client proteins between the Hsp70 and Hsp90 chaperone systems. Hop functions both intracellularly and extracellularly and has been implicated in many processes involved in cancer progression, including cell migration and invasion. Little is known about the mechanisms or domains by which extracellular Hop functions. In addition, little is known about the effects of Hop on signalling molecules involved in cell migration and invasion through regulation of actin dynamics. It was hypothesised that both extracellular and intracellular pools of Hop would regulate distinct cell migration processes by activation of cell signalling pathways or direct interactions with signalling intermediates. HS578T cells were treated with recombinant full length and truncated murine Hop proteins (overexpressed and purified in this study) to determine the effects of extracellular Hop and the independent domains on cell migration processes. Additionally, RNA interference (RNAi) techniques were used to determine the effect of Hop knockdown on cell migration related signalling intermediates and cell morphologies. A short hairpin RNA (shRNA) system for the stable knockdown of Hop was developed and used for a number of these studies. Treatment of HS578T cells with the TPR2A2B and TPR1 domains of Hop resulted in a significant decrease in cell migration and caused changes in the actin cytoskeleton and extracellular matrix proteins, gelatin and fibronectin. RhoC immunoprecipitated in a common complex with Hop and Hsp90. Hop knockdown reduced levels of actin and total RhoC, as well as active RhoC. In addition, knockdown of Hop resulted in a reduced migratory phenotype. We interpreted these data to indicate that intracellular Hop played a role in cell migration through regulation of RhoC activity, either through a direct interaction between Hop and RhoC, or an indirect interaction of RhoC with the Hsp90 multichaperone heterocomplex. Taken together, the data suggested that extracellular and intracellular Hop played distinct roles in extracellular and intracellular processes that lead to actin dynamics and cell migration. Understanding the mechanistic role of Hop in these processes is essential as it would aid in assessing the viability of Hop as a potential drug target for the treatment of metastatic cancers. , Thesis (MSc) -- Faculty of Science, Biochemistry, Microbiology and Biotechnology, 2014
- Full Text:
- Date Issued: 2014
- Authors: Contu, Lara
- Date: 2014
- Subjects: Heat shock proteins , Metastasis , Cancer Chemotherapy , Molecular chaperones , Cell migration
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/193961 , vital:45410
- Description: The Hsp70/Hsp90-organising protein (Hop) is a 60 kDa co-chaperone that acts as an adaptor molecule, facilitating the transfer of client proteins between the Hsp70 and Hsp90 chaperone systems. Hop functions both intracellularly and extracellularly and has been implicated in many processes involved in cancer progression, including cell migration and invasion. Little is known about the mechanisms or domains by which extracellular Hop functions. In addition, little is known about the effects of Hop on signalling molecules involved in cell migration and invasion through regulation of actin dynamics. It was hypothesised that both extracellular and intracellular pools of Hop would regulate distinct cell migration processes by activation of cell signalling pathways or direct interactions with signalling intermediates. HS578T cells were treated with recombinant full length and truncated murine Hop proteins (overexpressed and purified in this study) to determine the effects of extracellular Hop and the independent domains on cell migration processes. Additionally, RNA interference (RNAi) techniques were used to determine the effect of Hop knockdown on cell migration related signalling intermediates and cell morphologies. A short hairpin RNA (shRNA) system for the stable knockdown of Hop was developed and used for a number of these studies. Treatment of HS578T cells with the TPR2A2B and TPR1 domains of Hop resulted in a significant decrease in cell migration and caused changes in the actin cytoskeleton and extracellular matrix proteins, gelatin and fibronectin. RhoC immunoprecipitated in a common complex with Hop and Hsp90. Hop knockdown reduced levels of actin and total RhoC, as well as active RhoC. In addition, knockdown of Hop resulted in a reduced migratory phenotype. We interpreted these data to indicate that intracellular Hop played a role in cell migration through regulation of RhoC activity, either through a direct interaction between Hop and RhoC, or an indirect interaction of RhoC with the Hsp90 multichaperone heterocomplex. Taken together, the data suggested that extracellular and intracellular Hop played distinct roles in extracellular and intracellular processes that lead to actin dynamics and cell migration. Understanding the mechanistic role of Hop in these processes is essential as it would aid in assessing the viability of Hop as a potential drug target for the treatment of metastatic cancers. , Thesis (MSc) -- Faculty of Science, Biochemistry, Microbiology and Biotechnology, 2014
- Full Text:
- Date Issued: 2014