The importance of long-term post-release studies in classical biological control: Insect–plant monitoring and public awareness of water hyacinth management (Pontederia crassipes) in Dique Los Sauces, Argentina
- Faltlhauser, Ana C, Jiménez, Nadia L, Righetti, Tomas, Visintin, Andrés M, Torrens, Javier, Salinas, Nicolás A, Mc Kay, Fernando, Hill, Martin P, Cordo, Hugo A, Sosa, Alejandro J
- Authors: Faltlhauser, Ana C , Jiménez, Nadia L , Righetti, Tomas , Visintin, Andrés M , Torrens, Javier , Salinas, Nicolás A , Mc Kay, Fernando , Hill, Martin P , Cordo, Hugo A , Sosa, Alejandro J
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/424828 , vital:72187 , xlink:href="https://doi.org/10.1111/eea.13355"
- Description: Several components of classical biological control (CBC) programmes are necessary to assess the success of the management strategy (e.g., post-release monitoring) and also help prevent reintroductions or resurgences of invasive species (e.g., public awareness). Water hyacinth, Pontederia (= Eichhornia) crassipes (Mart.) Solms (Pontederiaceae) is an aquatic plant naturally distributed in the north-eastern region of the Del Plata basin in Argentina. In the 1960s it was introduced into the Dique Los Sauces reservoir located outside of its native range in La Rioja Province, in western Argentina, where it became invasive. The natural enemy, Neochetina bruchi Hustache (Coleoptera: Curculionidae), was intentionally introduced in 1974 to control the weed. To assess the success of this CBC programme, a long-term post-release study was conducted. Between 1965 and 2023, we monitored plant coverage, estimated N. bruchi densities, and quantified the associated damage by reanalysing previously published data and incorporating new sampling. We also conducted an online survey to analyse public knowledge and perception about this programme. Water hyacinth coverage fluctuated from its first record in 1965 (maximum coverage 90%) until the control of germinated plants (coverage 0%) in 2018. The plant decline was accompanied by an increase in the weevil population. In our survey, out of 325 respondents only a small group of mostly middle-aged and elderly people knew that the restoration had been achieved through a management strategy and even fewer were aware of the biocontrol approach taken. Respondents who had a positive approach to biological control were more aware of the management plan than respondents who had neutral or negative opinions. Neochetina bruchi has played a key factor in the control of P. crassipes. The intrinsic dynamics of these populations, the dormant seed bank, and the lack of public awareness support the need for long post-release evaluations including outreach campaigns to make a sustainable successful management programme.
- Full Text:
- Authors: Faltlhauser, Ana C , Jiménez, Nadia L , Righetti, Tomas , Visintin, Andrés M , Torrens, Javier , Salinas, Nicolás A , Mc Kay, Fernando , Hill, Martin P , Cordo, Hugo A , Sosa, Alejandro J
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/424828 , vital:72187 , xlink:href="https://doi.org/10.1111/eea.13355"
- Description: Several components of classical biological control (CBC) programmes are necessary to assess the success of the management strategy (e.g., post-release monitoring) and also help prevent reintroductions or resurgences of invasive species (e.g., public awareness). Water hyacinth, Pontederia (= Eichhornia) crassipes (Mart.) Solms (Pontederiaceae) is an aquatic plant naturally distributed in the north-eastern region of the Del Plata basin in Argentina. In the 1960s it was introduced into the Dique Los Sauces reservoir located outside of its native range in La Rioja Province, in western Argentina, where it became invasive. The natural enemy, Neochetina bruchi Hustache (Coleoptera: Curculionidae), was intentionally introduced in 1974 to control the weed. To assess the success of this CBC programme, a long-term post-release study was conducted. Between 1965 and 2023, we monitored plant coverage, estimated N. bruchi densities, and quantified the associated damage by reanalysing previously published data and incorporating new sampling. We also conducted an online survey to analyse public knowledge and perception about this programme. Water hyacinth coverage fluctuated from its first record in 1965 (maximum coverage 90%) until the control of germinated plants (coverage 0%) in 2018. The plant decline was accompanied by an increase in the weevil population. In our survey, out of 325 respondents only a small group of mostly middle-aged and elderly people knew that the restoration had been achieved through a management strategy and even fewer were aware of the biocontrol approach taken. Respondents who had a positive approach to biological control were more aware of the management plan than respondents who had neutral or negative opinions. Neochetina bruchi has played a key factor in the control of P. crassipes. The intrinsic dynamics of these populations, the dormant seed bank, and the lack of public awareness support the need for long post-release evaluations including outreach campaigns to make a sustainable successful management programme.
- Full Text:
Shifting contexts: contemporary South African art in changing times
- Authors: Ntombela, N
- Date: 2019
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/146200 , vital:38504 , ISBN 9781869143398 , https://books.google.co.za/books?id=xZlAjySD5-cCandq=Tribing+and+Untribing+the+Archive:+Identity+and+the+Material+Record+in+Southern+KwaZulu-Natal+in+the+Late+Independent+and+Colonial+Periodsdq=Tribing+and+Untribing+the+Archive:+Identity+and+the+Material+Record+in+Southern+KwaZulu-Natal+in+the+Late+Independent+and+Colonial+Periodsl=ensa=Xved=0ahUKEwjJ3oOGgcDpAhVuURUIHQyoAnIQ6AEIJzAA
- Description: Book abstract. The pernicious combination of tribe and tradition continues to tether modern South Africans to ideas about the region's remote past as primitive, timeless, and unchanging. Any hunger for knowledge or understanding of the past before European colonialism remains to a significant degree unsated in the face of a narrowly prescribed archive and repugnant, but insidiously resilient, stereotypes. These volumes track how the domain of the tribal and traditional came to be sharply distinguished from modernity, how it was denied a changing history and an archive, and was endowed instead with a timeless culture. They also offer strategies for engaging with the materials differently-from the interventions effected in contemporary artworks to the inserting of nameless, timeless objects of material culture into histories of individualized and politicized experience. The two volume set make this archive of material culture visible as an archival resource. They also seek to spring the identity trap, releasing the material from pre-assigned identity positions as tribal into settings that enable them to be used as resources for thinking critically about identity.
- Full Text:
- Authors: Ntombela, N
- Date: 2019
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/146200 , vital:38504 , ISBN 9781869143398 , https://books.google.co.za/books?id=xZlAjySD5-cCandq=Tribing+and+Untribing+the+Archive:+Identity+and+the+Material+Record+in+Southern+KwaZulu-Natal+in+the+Late+Independent+and+Colonial+Periodsdq=Tribing+and+Untribing+the+Archive:+Identity+and+the+Material+Record+in+Southern+KwaZulu-Natal+in+the+Late+Independent+and+Colonial+Periodsl=ensa=Xved=0ahUKEwjJ3oOGgcDpAhVuURUIHQyoAnIQ6AEIJzAA
- Description: Book abstract. The pernicious combination of tribe and tradition continues to tether modern South Africans to ideas about the region's remote past as primitive, timeless, and unchanging. Any hunger for knowledge or understanding of the past before European colonialism remains to a significant degree unsated in the face of a narrowly prescribed archive and repugnant, but insidiously resilient, stereotypes. These volumes track how the domain of the tribal and traditional came to be sharply distinguished from modernity, how it was denied a changing history and an archive, and was endowed instead with a timeless culture. They also offer strategies for engaging with the materials differently-from the interventions effected in contemporary artworks to the inserting of nameless, timeless objects of material culture into histories of individualized and politicized experience. The two volume set make this archive of material culture visible as an archival resource. They also seek to spring the identity trap, releasing the material from pre-assigned identity positions as tribal into settings that enable them to be used as resources for thinking critically about identity.
- Full Text:
Designing writing groups to support postgraduate students’ academic writing: a case study from a South African university
- Authors: Wilmot, Kirstin
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66267 , vital:28926 , https://doi.org/10.1080/14703297.2016.1238775
- Description: publisher version , This paper reports on a writing group pilot programme implemented at a South African university. Drawing on literature, anonymous student evaluations and facilitator observations, it discusses the use of writing groups for supporting postgraduate academic writing practices. Developed within a broader postgraduate academic writing support programme, the paper discusses a case study of two pilot writing groups: a multidisciplinary long-term group and a disciplinary short-term ‘writing-intensive’ group. The findings indicate that the overall experience of the writing group was a positive one, with each group presenting varied ‘success’ aspects as well as challenges. Insights gleaned may contribute to our understanding of how these groups can be utilised to support postgraduate students and how different kinds of groups can be developed to serve particular student needs. The paper concludes with a discussion of the inclusion of a disciplinary expert, which proved particularly useful in this pilot.
- Full Text: false
- Authors: Wilmot, Kirstin
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66267 , vital:28926 , https://doi.org/10.1080/14703297.2016.1238775
- Description: publisher version , This paper reports on a writing group pilot programme implemented at a South African university. Drawing on literature, anonymous student evaluations and facilitator observations, it discusses the use of writing groups for supporting postgraduate academic writing practices. Developed within a broader postgraduate academic writing support programme, the paper discusses a case study of two pilot writing groups: a multidisciplinary long-term group and a disciplinary short-term ‘writing-intensive’ group. The findings indicate that the overall experience of the writing group was a positive one, with each group presenting varied ‘success’ aspects as well as challenges. Insights gleaned may contribute to our understanding of how these groups can be utilised to support postgraduate students and how different kinds of groups can be developed to serve particular student needs. The paper concludes with a discussion of the inclusion of a disciplinary expert, which proved particularly useful in this pilot.
- Full Text: false
HOP expression is regulated by p53 and RAS and characteristic of a cancer gene signature
- Mattison, Stacey A, Blatch, Gregory L, Edkins, Adrienne L
- Authors: Mattison, Stacey A , Blatch, Gregory L , Edkins, Adrienne L
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66278 , vital:28928 , https://doi.org/10.1007/s12192-016-0755-8
- Description: publisher version , The Hsp70/Hsp90 organising protein (HOP) is a co-chaperone essential for client protein transfer from Hsp70 to Hsp90 within the Hsp90 chaperone machine. Although HOP is upregulated in various cancers, there is limited information from in vitro studies on how HOP expression is regulated in cancer. The main objective of this study was to identify the HOP promoter and investigate its activity in cancerous cells. Bioinformatic analysis of the -2500 to +16 bp region of the HOP gene identified a large CpG island and a range of putative cis-elements. Many of the cis-elements were potentially bound by transcription factors which are activated by oncogenic pathways. Luciferase reporter assays demonstrated that the upstream region of the HOP gene contains an active promoter in vitro. Truncation of this region suggested that the core HOP promoter region was -855 to +16 bp. HOP promoter activity was highest in Hs578T, HEK293T and SV40- transformed MEF1 cell lines which expressed mutant or inactive p53. In a mutant p53 background, expression of wild-type p53 led to a reduction in promoter activity, while inhibition of wild-type p53 in HeLa cells increased HOP promoter activity. Additionally, in Hs578T and HEK293T cell lines containing inactive p53, expression of HRAS increased HOP promoter activity. However, HRAS activation of the HOP promoter was inhibited by p53 overexpression. These findings suggest for the first time that HOP expression in cancer may be regulated by both RAS activation and p53 inhibition. Taken together, these data suggest that HOP may be part of the cancer gene signature induced by a combination of mutant p53 and mutated RAS that is associated with cellular transformation.
- Full Text: false
- Authors: Mattison, Stacey A , Blatch, Gregory L , Edkins, Adrienne L
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66278 , vital:28928 , https://doi.org/10.1007/s12192-016-0755-8
- Description: publisher version , The Hsp70/Hsp90 organising protein (HOP) is a co-chaperone essential for client protein transfer from Hsp70 to Hsp90 within the Hsp90 chaperone machine. Although HOP is upregulated in various cancers, there is limited information from in vitro studies on how HOP expression is regulated in cancer. The main objective of this study was to identify the HOP promoter and investigate its activity in cancerous cells. Bioinformatic analysis of the -2500 to +16 bp region of the HOP gene identified a large CpG island and a range of putative cis-elements. Many of the cis-elements were potentially bound by transcription factors which are activated by oncogenic pathways. Luciferase reporter assays demonstrated that the upstream region of the HOP gene contains an active promoter in vitro. Truncation of this region suggested that the core HOP promoter region was -855 to +16 bp. HOP promoter activity was highest in Hs578T, HEK293T and SV40- transformed MEF1 cell lines which expressed mutant or inactive p53. In a mutant p53 background, expression of wild-type p53 led to a reduction in promoter activity, while inhibition of wild-type p53 in HeLa cells increased HOP promoter activity. Additionally, in Hs578T and HEK293T cell lines containing inactive p53, expression of HRAS increased HOP promoter activity. However, HRAS activation of the HOP promoter was inhibited by p53 overexpression. These findings suggest for the first time that HOP expression in cancer may be regulated by both RAS activation and p53 inhibition. Taken together, these data suggest that HOP may be part of the cancer gene signature induced by a combination of mutant p53 and mutated RAS that is associated with cellular transformation.
- Full Text: false
The National Wellbeing Index in the isiXhosa translation: focus group discussions on how South Africans view the quality of their society
- Moller, Valerie, Roberts, Benjamin J, Zani, Dalindyebo
- Authors: Moller, Valerie , Roberts, Benjamin J , Zani, Dalindyebo
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67135 , vital:29035 , https://doi.org/10.1007/s11205-016-1481-4
- Description: publisher version , The International Wellbeing Index covers two complementary measures, the Personal Wellbeing Index (PWI) and the National Wellbeing Index (NWI). The focus group study reported here tested the understanding of the NWI when translated into isiXhosa, a language spoken by 6 million South Africans, or 16% of the country’s population. A challenge for the NWI in measuring national well-being is the tendency for meaning to get ‘lost in translation’ in the wording of the instrument, owing to the disparities that exist between levels of living in developed and developing nations. The focussed discussions with native isiXhosa speakers conveyed the different shades of meaning associated with the six domains that make up the NWI. The isiXhosa keywords for the domains of social conditions, the natural environment, national security, and management of the country’s affairs (government) were readily understood, but discussants asked for further clarification of keywords for the domains relating to the economy and business. Conversations showed up the close link between personal and national well-being: discussants drew upon their personal and parochial life experiences along with their knowledge of current affairs to evaluate the nation’s quality of life. They described the social contract between citizens and their government to create a ‘caring society’ that promotes well-being across key domains of national life. Many of the reference standards used to evaluate national well-being were ones postulated to influence personal well-being (Michalos A.C, Social Indicators Research 16(4): 347–413 1985 ). The study also pointed to a potential problem for longitudinal studies if the bipolar satisfaction scale, formerly used to measure the International Wellbeing Index’s PWI and NWI, is changed to a unipolar one. Findings from this pilot study confirm the potential of the NWI as a tool for measuring national well-being cross-culturally.
- Full Text: false
- Authors: Moller, Valerie , Roberts, Benjamin J , Zani, Dalindyebo
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/67135 , vital:29035 , https://doi.org/10.1007/s11205-016-1481-4
- Description: publisher version , The International Wellbeing Index covers two complementary measures, the Personal Wellbeing Index (PWI) and the National Wellbeing Index (NWI). The focus group study reported here tested the understanding of the NWI when translated into isiXhosa, a language spoken by 6 million South Africans, or 16% of the country’s population. A challenge for the NWI in measuring national well-being is the tendency for meaning to get ‘lost in translation’ in the wording of the instrument, owing to the disparities that exist between levels of living in developed and developing nations. The focussed discussions with native isiXhosa speakers conveyed the different shades of meaning associated with the six domains that make up the NWI. The isiXhosa keywords for the domains of social conditions, the natural environment, national security, and management of the country’s affairs (government) were readily understood, but discussants asked for further clarification of keywords for the domains relating to the economy and business. Conversations showed up the close link between personal and national well-being: discussants drew upon their personal and parochial life experiences along with their knowledge of current affairs to evaluate the nation’s quality of life. They described the social contract between citizens and their government to create a ‘caring society’ that promotes well-being across key domains of national life. Many of the reference standards used to evaluate national well-being were ones postulated to influence personal well-being (Michalos A.C, Social Indicators Research 16(4): 347–413 1985 ). The study also pointed to a potential problem for longitudinal studies if the bipolar satisfaction scale, formerly used to measure the International Wellbeing Index’s PWI and NWI, is changed to a unipolar one. Findings from this pilot study confirm the potential of the NWI as a tool for measuring national well-being cross-culturally.
- Full Text: false
Colonised minds?: post-development theory and the desirability of development in Africa
- Authors: Matthews, Sally
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142213 , vital:38059 , DOI: 10.1080/01436597.2017.1279540
- Description: While post-development theory is very concerned with the ways in which development has impacted upon the countries of the Global South, there has been relatively little written on post-development theory from an African perspective. This paper identifies some of the ways in which post-development theory fails to adequately understand the African experience of development. In particular, I explore the difficulty that post-development theory confronts when faced with the continued desire on the part of many people in Africa for development.
- Full Text:
- Authors: Matthews, Sally
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/142213 , vital:38059 , DOI: 10.1080/01436597.2017.1279540
- Description: While post-development theory is very concerned with the ways in which development has impacted upon the countries of the Global South, there has been relatively little written on post-development theory from an African perspective. This paper identifies some of the ways in which post-development theory fails to adequately understand the African experience of development. In particular, I explore the difficulty that post-development theory confronts when faced with the continued desire on the part of many people in Africa for development.
- Full Text:
Counting on demographic equity to transform institutional cultures at historically white South African universities?:
- Booi, Masixole, Vincent, Louise, Liccardo, Sabrina
- Authors: Booi, Masixole , Vincent, Louise , Liccardo, Sabrina
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141946 , vital:38018 , DOI: 10.1080/07294360.2017.1289155
- Description: The post-apartheid higher education transformation project is faced with the challenge of recruiting and retaining black academics and other senior staff. But when we shift the focus from participation rates to equality–inequality within historically white universities (HWUs), then the discourse changes from demographic equity and redress to institutional culture and diversity. HWUs invoke the need to maintain their position as leading higher education institutions globally, and notions of ‘quality’ and ‘excellence’ have emerged as discursive practices, which serve to perpetuate exclusion. The question then arises as to which forms of capital comprise the Gold Standard at HWUs? Several South African universities have responded to the challenge of recruiting and retaining black academics by initiating programmes for the ‘accelerated development’ of these candidates.
- Full Text:
- Authors: Booi, Masixole , Vincent, Louise , Liccardo, Sabrina
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141946 , vital:38018 , DOI: 10.1080/07294360.2017.1289155
- Description: The post-apartheid higher education transformation project is faced with the challenge of recruiting and retaining black academics and other senior staff. But when we shift the focus from participation rates to equality–inequality within historically white universities (HWUs), then the discourse changes from demographic equity and redress to institutional culture and diversity. HWUs invoke the need to maintain their position as leading higher education institutions globally, and notions of ‘quality’ and ‘excellence’ have emerged as discursive practices, which serve to perpetuate exclusion. The question then arises as to which forms of capital comprise the Gold Standard at HWUs? Several South African universities have responded to the challenge of recruiting and retaining black academics by initiating programmes for the ‘accelerated development’ of these candidates.
- Full Text:
Decoupled reciprocal subsidies of biomass and fatty acids in fluxes of invertebrates between a temperate river and the adjacent land:
- Moyo, Sydney, Chari, Lenin D, Villet, Martin H, Richoux, Nicole B
- Authors: Moyo, Sydney , Chari, Lenin D , Villet, Martin H , Richoux, Nicole B
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140843 , vital:37923 , DOI: 10.1007/s00027-017-0529-0
- Description: Streams and riparian areas are tightly coupled through reciprocal trophic subsidies, and there is evidence that these subsidies affect consumers in connected ecosystems. Most studies of subsidies consider only their quantity and not their quality. We determined the bidirectional exchange of organisms between the Kowie River and its riparian zone in South Africa using floating pyramidal traps (to measure insect emergence) and pan traps (to capture infalling invertebrates).
- Full Text:
- Authors: Moyo, Sydney , Chari, Lenin D , Villet, Martin H , Richoux, Nicole B
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140843 , vital:37923 , DOI: 10.1007/s00027-017-0529-0
- Description: Streams and riparian areas are tightly coupled through reciprocal trophic subsidies, and there is evidence that these subsidies affect consumers in connected ecosystems. Most studies of subsidies consider only their quantity and not their quality. We determined the bidirectional exchange of organisms between the Kowie River and its riparian zone in South Africa using floating pyramidal traps (to measure insect emergence) and pan traps (to capture infalling invertebrates).
- Full Text:
Forensic entomotoxicology revisited: towards professional standardisation of study designs
- da Silva, Erica I T, Wilhelmi, Brendan S, Villet, Martin H
- Authors: da Silva, Erica I T , Wilhelmi, Brendan S , Villet, Martin H
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140819 , vital:37921 , DOI: 10.1007/s00414-017-1603-9
- Description: Forensic entomotoxicology is the use of insects as evidence of whether a toxicant is present in an environment such as a corpse, river or landscape. The earliest overtly forensic study was published in 1977, and since then, at least 63 papers have been published, most of them focused on the detection of toxicants in insects or on effects of toxicants on diverse insect indicator taxa. A comprehensive review of the published literature revealed various inconsistencies between studies that could be addressed by introducing standard protocols for such studies. These protocols could include selecting widespread and common model organisms (such as Lucilia sericata, Calliphora vicina, Chrysomya megacephala and Dermestes maculatus) and model toxicants (e.g. morphine and amitriptyline) to build up comparative databases; developing a standard matrix for use as a feeding substrate; setting guidelines for statistically adequate sample sizes; and deploying more sophisticated analytical methods from the general field of toxicology.
- Full Text:
- Authors: da Silva, Erica I T , Wilhelmi, Brendan S , Villet, Martin H
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/140819 , vital:37921 , DOI: 10.1007/s00414-017-1603-9
- Description: Forensic entomotoxicology is the use of insects as evidence of whether a toxicant is present in an environment such as a corpse, river or landscape. The earliest overtly forensic study was published in 1977, and since then, at least 63 papers have been published, most of them focused on the detection of toxicants in insects or on effects of toxicants on diverse insect indicator taxa. A comprehensive review of the published literature revealed various inconsistencies between studies that could be addressed by introducing standard protocols for such studies. These protocols could include selecting widespread and common model organisms (such as Lucilia sericata, Calliphora vicina, Chrysomya megacephala and Dermestes maculatus) and model toxicants (e.g. morphine and amitriptyline) to build up comparative databases; developing a standard matrix for use as a feeding substrate; setting guidelines for statistically adequate sample sizes; and deploying more sophisticated analytical methods from the general field of toxicology.
- Full Text:
MD-TASK: a software suite for analyzing molecular dynamics trajectories
- Brown, David K, Penkler, David L, Amamuddy, Olivier S, Ross, Caroline J, Atilgan, Ali R, Atilgan, Canan, Tastan Bishop, Özlem
- Authors: Brown, David K , Penkler, David L , Amamuddy, Olivier S , Ross, Caroline J , Atilgan, Ali R , Atilgan, Canan , Tastan Bishop, Özlem
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125138 , vital:35735 , https://doi.10.1093/bioinformatics/btx349
- Description: Molecular dynamics (MD) determines the physical motions of atoms of a biological macromolecule in a cell-like environment and is an important method in structural bioinformatics. Traditionally, measurements such as root mean square deviation, root mean square fluctuation, radius of gyration, and various energy measures have been used to analyze MD simulations. Here, we present MD-TASK, a novel software suite that employs graph theory techniques, perturbation response scanning, and dynamic cross-correlation to provide unique ways for analyzing MD trajectories.
- Full Text:
- Authors: Brown, David K , Penkler, David L , Amamuddy, Olivier S , Ross, Caroline J , Atilgan, Ali R , Atilgan, Canan , Tastan Bishop, Özlem
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125138 , vital:35735 , https://doi.10.1093/bioinformatics/btx349
- Description: Molecular dynamics (MD) determines the physical motions of atoms of a biological macromolecule in a cell-like environment and is an important method in structural bioinformatics. Traditionally, measurements such as root mean square deviation, root mean square fluctuation, radius of gyration, and various energy measures have been used to analyze MD simulations. Here, we present MD-TASK, a novel software suite that employs graph theory techniques, perturbation response scanning, and dynamic cross-correlation to provide unique ways for analyzing MD trajectories.
- Full Text:
Pessimistic assessment of white shark population status in South Africa: comment on Andreotti et al.(2016)
- Irion, Dylan T, Noble, Leslie R, Kock, Alison A, Gennari, Enrico, Dicken, Matthew L, Hewitt, Adrian M, Towner, Alison V, Booth, Anthony J, Smale, Malcolm J, Cliff, Geremy
- Authors: Irion, Dylan T , Noble, Leslie R , Kock, Alison A , Gennari, Enrico , Dicken, Matthew L , Hewitt, Adrian M , Towner, Alison V , Booth, Anthony J , Smale, Malcolm J , Cliff, Geremy
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/${Handle} , vital:35799 , https://doi.10.3354/meps12283
- Description: Andreotti et al. (2016; Mar Ecol Prog Ser 552:241−253) estimate an abundance (N) of 438 white sharks Carcharodon carcharias and a contemporary effective population size (CNe) of 333 individuals along the South African coast. N was estimated by using a mark-recapture analysis of photographic identification records from a single aggregation site (Gansbaai). CNe was calculated based on the levels of pairwise linkage disequilibrium of genetic material collected from 4 aggregation sites across approximately 965 km of South African coastline. However, due to the complex stock structure of white sharks and the model assumptions made by Andreotti et al. (2016), the conclusions drawn cannot be supported by their methods and data.
- Full Text:
- Authors: Irion, Dylan T , Noble, Leslie R , Kock, Alison A , Gennari, Enrico , Dicken, Matthew L , Hewitt, Adrian M , Towner, Alison V , Booth, Anthony J , Smale, Malcolm J , Cliff, Geremy
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/${Handle} , vital:35799 , https://doi.10.3354/meps12283
- Description: Andreotti et al. (2016; Mar Ecol Prog Ser 552:241−253) estimate an abundance (N) of 438 white sharks Carcharodon carcharias and a contemporary effective population size (CNe) of 333 individuals along the South African coast. N was estimated by using a mark-recapture analysis of photographic identification records from a single aggregation site (Gansbaai). CNe was calculated based on the levels of pairwise linkage disequilibrium of genetic material collected from 4 aggregation sites across approximately 965 km of South African coastline. However, due to the complex stock structure of white sharks and the model assumptions made by Andreotti et al. (2016), the conclusions drawn cannot be supported by their methods and data.
- Full Text:
Rhodes University Graduation Ceremony 2017
- Authors: Rhodes University
- Date: 2017
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10962/58067 , vital:27061
- Description: 2017 Graduation Ceremony, Umsitho Wothweso-Zidanga, Gradeplegtigheid [at] 1820 Settlers National Monument, Thursday, 20 April until Saturday, 22 April 2017.
- Full Text:
- Authors: Rhodes University
- Date: 2017
- Language: English
- Type: text
- Identifier: http://hdl.handle.net/10962/58067 , vital:27061
- Description: 2017 Graduation Ceremony, Umsitho Wothweso-Zidanga, Gradeplegtigheid [at] 1820 Settlers National Monument, Thursday, 20 April until Saturday, 22 April 2017.
- Full Text:
Synthesis, characterisation and evaluation of benzoxaborole-based hybrids as antiplasmodial agents
- Authors: Gumbo, Maureen
- Date: 2017
- Subjects: Malaria Chemotherapy , Antimalarials , Boron compounds , Drug resistance , Plasmodium falciparum , Drug development
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/59193 , vital:27456
- Description: Malaria is a mosquito-borne disease, which continues to pose a threat to the entire humanity. About 40% of the world population is estimated to be at risk of infections by malaria. Despite efforts undertaken by scientific community, government entities and international organizations, malaria is still rampant. The major problem is drug resistance, where the Plasmodium spp have over the past decades developed drug resistance against available drugs. In order to counter this problem, novel antimalarial drugs that are efficacious and with novel mode of action are of great necessity. Benzoxaborole derivatives have been shown to exhibit promising antimalarial activity against Plasmodium falciparum strains. Previous studies reported on the compounds such as 6-(2- (alkoxycarbonyl)pyrazinyl-5-oxy)-1,3-dihydro-1-hydroxy-2,1-benzoxaboroles, which showed good antimalarial activity against both W7 and 3D7 strains without significant toxicity. On the other hand, chloroquine (CQ) and cinnamic acids have a wide variety of biological activity including antimalarial activity. Herein, a hybridisation strategy was employed to synthesise new CQ-benzoxaborole and cinnamoyl-benzoxaborole hybrids. CQ-Benzoxaborole 2.12a-c and cinnamoylbenzoxaborole 2.11a-g hydrid molecules were synthesised in low to good yields. Their structural identities were confirmed using conventional spectroscopic techniques (1H and 13C NMR, and mass spectrometry). CQ-benzoxaborole compounds, however, showed instability, and only 2.12b was used for in vitro biological assay and showed activity comparable to CQ. Furthermore, in vitro biological assay revealed that compounds 2.11a-g poorly inhibited the growth of P. falciparum parasites. Interestingly, these compounds, however, exhibited satisfactory activity against Trypanosoma brucei with IC50 = 0.052 μM for compound 2.11g. The cell cytotoxicity assay of all final compounds confirmed that all CQ-benzoxaborole 2.12b and cinnamoyl-benzoxaborole 2.11a-g hybrids were non-toxic against HeLa cell lines. However, efforts to further expand the structure-activity relationship (SAR) of CQbenzoxaborole by increasing the length of the linker with one extra carbon (Scheme 2.10) were not possible as an important precursor 6-formylbenzoxaborole 2.29 could not be synthesized in sufficient yields. , Thesis (MSc) -- Faculty of Faculty of Science, Chemistry, 2017
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- Authors: Gumbo, Maureen
- Date: 2017
- Subjects: Malaria Chemotherapy , Antimalarials , Boron compounds , Drug resistance , Plasmodium falciparum , Drug development
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/59193 , vital:27456
- Description: Malaria is a mosquito-borne disease, which continues to pose a threat to the entire humanity. About 40% of the world population is estimated to be at risk of infections by malaria. Despite efforts undertaken by scientific community, government entities and international organizations, malaria is still rampant. The major problem is drug resistance, where the Plasmodium spp have over the past decades developed drug resistance against available drugs. In order to counter this problem, novel antimalarial drugs that are efficacious and with novel mode of action are of great necessity. Benzoxaborole derivatives have been shown to exhibit promising antimalarial activity against Plasmodium falciparum strains. Previous studies reported on the compounds such as 6-(2- (alkoxycarbonyl)pyrazinyl-5-oxy)-1,3-dihydro-1-hydroxy-2,1-benzoxaboroles, which showed good antimalarial activity against both W7 and 3D7 strains without significant toxicity. On the other hand, chloroquine (CQ) and cinnamic acids have a wide variety of biological activity including antimalarial activity. Herein, a hybridisation strategy was employed to synthesise new CQ-benzoxaborole and cinnamoyl-benzoxaborole hybrids. CQ-Benzoxaborole 2.12a-c and cinnamoylbenzoxaborole 2.11a-g hydrid molecules were synthesised in low to good yields. Their structural identities were confirmed using conventional spectroscopic techniques (1H and 13C NMR, and mass spectrometry). CQ-benzoxaborole compounds, however, showed instability, and only 2.12b was used for in vitro biological assay and showed activity comparable to CQ. Furthermore, in vitro biological assay revealed that compounds 2.11a-g poorly inhibited the growth of P. falciparum parasites. Interestingly, these compounds, however, exhibited satisfactory activity against Trypanosoma brucei with IC50 = 0.052 μM for compound 2.11g. The cell cytotoxicity assay of all final compounds confirmed that all CQ-benzoxaborole 2.12b and cinnamoyl-benzoxaborole 2.11a-g hybrids were non-toxic against HeLa cell lines. However, efforts to further expand the structure-activity relationship (SAR) of CQbenzoxaborole by increasing the length of the linker with one extra carbon (Scheme 2.10) were not possible as an important precursor 6-formylbenzoxaborole 2.29 could not be synthesized in sufficient yields. , Thesis (MSc) -- Faculty of Faculty of Science, Chemistry, 2017
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Temperature-dependence of time-resolved optically stimulated luminescence and composition heterogeneity of synthetic α-Al2O3: C
- Chithambo, Makaiko L, Costin, G
- Authors: Chithambo, Makaiko L , Costin, G
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124172 , vital:35573 , https://doi.org/10.1016/j.jlumin.2016.10.038
- Description: The relationship of pulse-width, lifetime and measurement temperature in describing intensity of time-resolved luminescence optically stimulated at 470 nm from α-Al2O3:C is reported. The change of luminescence intensity with stimulation temperature is discussed in terms of the signal integrated over a complete time-resolved luminescence spectrum or in terms of ratios of the signal emitted either during or after pulsed stimulation to the total signal obtained per spectrum. The temperature-induced change in these parameters depends on whether the pulse-width is less or more than the luminescence lifetime. This is because the lifetime in α-Al2O3:C varies with measurement temperature. We have developed and applied new models to distinguish thermal assistance from different traps and to use this information as an additional means to analyse thermal quenching by using the luminescence intensity integrated from time-resolved spectra. Using a model based on use of the throughput, the activation energy for thermal assistance was determined for the shallow trap as 0.054±0.001 eV and as 0.53±0.03 eV for the main trap. The activation energy for thermal quenching was then evaluated using luminescence yield during the pulse as 1.09±0.01 eV and as 1.12±0.01 eV using the throughput after the pulse. Using the new analytical method based on integrated intensity, the activation energy for thermal quenching was found as 1.00±0.07 eV. These values are self-consistent and show that the methods for analyzing temperature-induced changes in intensity and the attendant thermal effects, such as thermal assistance can be successfully applied. We have also reported a general mathematical model that accounts for the temperature-dependence of time-resolved luminescence from α-Al2O3:C. The luminescence study was complemented by investigation of the phase and composition heterogeneity of the samples.
- Full Text: false
- Authors: Chithambo, Makaiko L , Costin, G
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124172 , vital:35573 , https://doi.org/10.1016/j.jlumin.2016.10.038
- Description: The relationship of pulse-width, lifetime and measurement temperature in describing intensity of time-resolved luminescence optically stimulated at 470 nm from α-Al2O3:C is reported. The change of luminescence intensity with stimulation temperature is discussed in terms of the signal integrated over a complete time-resolved luminescence spectrum or in terms of ratios of the signal emitted either during or after pulsed stimulation to the total signal obtained per spectrum. The temperature-induced change in these parameters depends on whether the pulse-width is less or more than the luminescence lifetime. This is because the lifetime in α-Al2O3:C varies with measurement temperature. We have developed and applied new models to distinguish thermal assistance from different traps and to use this information as an additional means to analyse thermal quenching by using the luminescence intensity integrated from time-resolved spectra. Using a model based on use of the throughput, the activation energy for thermal assistance was determined for the shallow trap as 0.054±0.001 eV and as 0.53±0.03 eV for the main trap. The activation energy for thermal quenching was then evaluated using luminescence yield during the pulse as 1.09±0.01 eV and as 1.12±0.01 eV using the throughput after the pulse. Using the new analytical method based on integrated intensity, the activation energy for thermal quenching was found as 1.00±0.07 eV. These values are self-consistent and show that the methods for analyzing temperature-induced changes in intensity and the attendant thermal effects, such as thermal assistance can be successfully applied. We have also reported a general mathematical model that accounts for the temperature-dependence of time-resolved luminescence from α-Al2O3:C. The luminescence study was complemented by investigation of the phase and composition heterogeneity of the samples.
- Full Text: false
Thermoluminescence of K-Mg-Al-Zn fluorophosphate glass
- Thomas, Sunil, Chithambo, Makaiko L
- Authors: Thomas, Sunil , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124188 , vital:35574 , https://doi.org/10.1016/j.optmat.2016.12.035
- Description: The thermoluminescence of beta irradiated K-Mg-Al-Zn fluorophosphate glass is reported. A glow-curve corresponding to 10 Gy measured at 1 °C/s shows two peaks, a weaker-intensity one at 70 °C and a more prominent one at 235 °C, the subject of this report. The main peak was observed to fade with delay between irradiation and measurement and specifically, by 11% in 15 h. Its dose response is superlinear in the dose range 1–190 Gy although the change was linear for the initial 10 Gy. Regarding kinetic analysis, the activation energy of the higher temperature peak was evaluated as 1.31 eV and that of the lower temperature peak was found as 0.47 eV. It was also noted that the main peak is affected by thermal quenching with an activation energy for thermal quenching equal to 1.37 eV. It is proposed that the mechanism associated with the thermoluminescence in K-Mg-Al-Zn fluorophosphate glass is that electrons trapped by the metal cations are released during heating and then recombine with holes at oxygen sites.
- Full Text: false
- Authors: Thomas, Sunil , Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124188 , vital:35574 , https://doi.org/10.1016/j.optmat.2016.12.035
- Description: The thermoluminescence of beta irradiated K-Mg-Al-Zn fluorophosphate glass is reported. A glow-curve corresponding to 10 Gy measured at 1 °C/s shows two peaks, a weaker-intensity one at 70 °C and a more prominent one at 235 °C, the subject of this report. The main peak was observed to fade with delay between irradiation and measurement and specifically, by 11% in 15 h. Its dose response is superlinear in the dose range 1–190 Gy although the change was linear for the initial 10 Gy. Regarding kinetic analysis, the activation energy of the higher temperature peak was evaluated as 1.31 eV and that of the lower temperature peak was found as 0.47 eV. It was also noted that the main peak is affected by thermal quenching with an activation energy for thermal quenching equal to 1.37 eV. It is proposed that the mechanism associated with the thermoluminescence in K-Mg-Al-Zn fluorophosphate glass is that electrons trapped by the metal cations are released during heating and then recombine with holes at oxygen sites.
- Full Text: false
Thermoluminescence of SrAl2O4: Eu2+, Dy3+: kinetic analysis of a composite-peak
- Chithambo, Makaiko L, Wako, A H, Finch, A A
- Authors: Chithambo, Makaiko L , Wako, A H , Finch, A A
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124157 , vital:35571 , https://doi.org/10.1016/j.radmeas.2016.12.009
- Description: The kinetic analysis of thermoluminescence of beta-irradiated SrAl2O4:Eu2+,Dy3+ is reported. The glow-curve is dominated by an apparently-single peak. It has been demonstrated using a number of tests including partial dynamic-heating, isothermal heating, phosphorescence and, the effect of fading, that the peak and the glow-curve consists of a set of closely-spaced peaks. In view of the peak being complex, its first few components were abstracted and analysed and for comparison, the peak was also analysed assuming it is genuinely single.
- Full Text: false
- Authors: Chithambo, Makaiko L , Wako, A H , Finch, A A
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124157 , vital:35571 , https://doi.org/10.1016/j.radmeas.2016.12.009
- Description: The kinetic analysis of thermoluminescence of beta-irradiated SrAl2O4:Eu2+,Dy3+ is reported. The glow-curve is dominated by an apparently-single peak. It has been demonstrated using a number of tests including partial dynamic-heating, isothermal heating, phosphorescence and, the effect of fading, that the peak and the glow-curve consists of a set of closely-spaced peaks. In view of the peak being complex, its first few components were abstracted and analysed and for comparison, the peak was also analysed assuming it is genuinely single.
- Full Text: false
Thermoluminescence of the main peak in SrAl2O4: Eu2+, Dy3+: spectral and kinetics features of secondary emission detected in the ultra-violet region
- Authors: Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124197 , vital:35575 , https://doi.org/10.1016/j.radmeas.2016.12.001
- Description: We report the thermoluminescence of SrAl2O4:Eu2+,Dy3+ measured in the ultra-violet region of the spectrum between 300 and 400 nm. Complementary measurements of X-ray excited optical luminescence confirm emission bands of stimulated luminescence in this region. As a further test, optically stimulated luminescence was also measured in this region. The glow curve measured at 1 °C s−1 following irradiation to various doses appears simple and single but is in reality a collection of several components. This was shown by results from the Tm-Tstop method on both ends of the peak, application of thermal cleaning beyond the peak maximum as well as the dependence of the peak on fading. The latter shows that new peaks appear as preceding ones fade. Kinetic analysis of some of the main peaks was carried out giving an activation energy of 0.6 eV. The implication of the results on measurement of phosphorescence, interpretation of dose response and fading is discussed.
- Full Text: false
- Authors: Chithambo, Makaiko L
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124197 , vital:35575 , https://doi.org/10.1016/j.radmeas.2016.12.001
- Description: We report the thermoluminescence of SrAl2O4:Eu2+,Dy3+ measured in the ultra-violet region of the spectrum between 300 and 400 nm. Complementary measurements of X-ray excited optical luminescence confirm emission bands of stimulated luminescence in this region. As a further test, optically stimulated luminescence was also measured in this region. The glow curve measured at 1 °C s−1 following irradiation to various doses appears simple and single but is in reality a collection of several components. This was shown by results from the Tm-Tstop method on both ends of the peak, application of thermal cleaning beyond the peak maximum as well as the dependence of the peak on fading. The latter shows that new peaks appear as preceding ones fade. Kinetic analysis of some of the main peaks was carried out giving an activation energy of 0.6 eV. The implication of the results on measurement of phosphorescence, interpretation of dose response and fading is discussed.
- Full Text: false
Towards a framework for assessing the sustainability of local economic development based on natural resources: honeybush tea in the Eastern Cape Province of South Africa
- Polak, James S, Snowball, Jeanette D
- Authors: Polak, James S , Snowball, Jeanette D
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/69201 , vital:29445 , https://doi.org/10.1080/13549839.2016.1196348
- Description: Despite the popularity of local economic development (LED) as a job creation and economic growth strategy in South Africa, many LED projects have not proved to be sustainable in the long-run, especially where human systems interact with biological ones. This article examines the relationship between sustainability and LED within the context of the emerging honeybush tea industry in the Eastern Cape. Data were gathered from provincial as well as local government policy documents and reports, and via key informant interviews. The data were analysed using Connelly’s [(2007). Mapping sustainable development as a contested concept. Local Environment, 12 (3), 259–278] three pronged approach to sustainable development as a lens through which to view the local industry. Findings showed that the industry offers many opportunities for development, including job creation in poorer, rural households; sustainable wild harvesting using a permit system; commercial cultivation; potential to develop social capital; potential for community-based LED; and product diversification. However, there are also corresponding challenges: There is currently no reliable data on the maximum sustainable yield, which is needed to guide quota allocations for entrepreneurial harvesters harvesting from wild stocks; possible biodiversity loss; and enforcing the permit scheme is proving difficult in remote rural areas.
- Full Text: false
- Authors: Polak, James S , Snowball, Jeanette D
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/69201 , vital:29445 , https://doi.org/10.1080/13549839.2016.1196348
- Description: Despite the popularity of local economic development (LED) as a job creation and economic growth strategy in South Africa, many LED projects have not proved to be sustainable in the long-run, especially where human systems interact with biological ones. This article examines the relationship between sustainability and LED within the context of the emerging honeybush tea industry in the Eastern Cape. Data were gathered from provincial as well as local government policy documents and reports, and via key informant interviews. The data were analysed using Connelly’s [(2007). Mapping sustainable development as a contested concept. Local Environment, 12 (3), 259–278] three pronged approach to sustainable development as a lens through which to view the local industry. Findings showed that the industry offers many opportunities for development, including job creation in poorer, rural households; sustainable wild harvesting using a permit system; commercial cultivation; potential to develop social capital; potential for community-based LED; and product diversification. However, there are also corresponding challenges: There is currently no reliable data on the maximum sustainable yield, which is needed to guide quota allocations for entrepreneurial harvesters harvesting from wild stocks; possible biodiversity loss; and enforcing the permit scheme is proving difficult in remote rural areas.
- Full Text: false
"Let loose in the unthinkable unspeakable": waiting and alterity in Samuel Beckett's trilogy
- Authors: Marais, Jessica
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/3917 , vital:20557
- Description: In this thesis, I examine the interrelated roles of waiting and alterity in Samuel Beckett's trilogy of novels: Molloy, Malone Dies and The Unnamable. The conventional understanding of waiting is as an intentional relationship between a waiting subject and an awaited object. This kind of waiting is end-directed, and, in order for it to be worthwhile, the awaited must, at some point, arrive. In the trilogy, however, the awaited never does arrive, and it is my contention that the novels are concerned with an unconventional kind of waiting, which, being without object or end, takes the form of a non-intentional relationship between waiter and awaited. Significantly, through the non-intentional wait, the subject awaits the unawaited. She or he thereby encounters the radically other, or that which cannot be rendered familiar or assimilated in any way – an unthinkable, unspeakable, ungraspable excess that overflows the limits of thought and language. The texts foreground the vexed question of response to such alterity: how can one approach the ungraspable as ungraspable, when it is in the nature of any approach to attempt to grasp? I argue that the texts explore a paradoxical form of "incurious seeking" as an avenue to accommodate the absolutely other.
- Full Text:
- Authors: Marais, Jessica
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/3917 , vital:20557
- Description: In this thesis, I examine the interrelated roles of waiting and alterity in Samuel Beckett's trilogy of novels: Molloy, Malone Dies and The Unnamable. The conventional understanding of waiting is as an intentional relationship between a waiting subject and an awaited object. This kind of waiting is end-directed, and, in order for it to be worthwhile, the awaited must, at some point, arrive. In the trilogy, however, the awaited never does arrive, and it is my contention that the novels are concerned with an unconventional kind of waiting, which, being without object or end, takes the form of a non-intentional relationship between waiter and awaited. Significantly, through the non-intentional wait, the subject awaits the unawaited. She or he thereby encounters the radically other, or that which cannot be rendered familiar or assimilated in any way – an unthinkable, unspeakable, ungraspable excess that overflows the limits of thought and language. The texts foreground the vexed question of response to such alterity: how can one approach the ungraspable as ungraspable, when it is in the nature of any approach to attempt to grasp? I argue that the texts explore a paradoxical form of "incurious seeking" as an avenue to accommodate the absolutely other.
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2OS
- Authors: Machanick, Philip
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439214 , vital:73556 , https://homes.cs.ru.ac.za/philip/Courses/CS2-OS/Cs2ToOS.pdf
- Description: In this book I approach the problem of understanding an OS from the point of view of a C programmer who needs to understand enough of how an OS works to program efficiently and avoid traps and pitfalls arising from not understanding what is happening underneath you. If you have a deep understanding of the memory system, you will not program in a style that loses significant performance by breaking the assumptions of the OS designer. If you have an understanding of how IO works, you can make good use of OS services. As you work through this book you will see other examples.
- Full Text:
- Authors: Machanick, Philip
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439214 , vital:73556 , https://homes.cs.ru.ac.za/philip/Courses/CS2-OS/Cs2ToOS.pdf
- Description: In this book I approach the problem of understanding an OS from the point of view of a C programmer who needs to understand enough of how an OS works to program efficiently and avoid traps and pitfalls arising from not understanding what is happening underneath you. If you have a deep understanding of the memory system, you will not program in a style that loses significant performance by breaking the assumptions of the OS designer. If you have an understanding of how IO works, you can make good use of OS services. As you work through this book you will see other examples.
- Full Text: