A missing link in the estuarine nitrogen cycle?: coupled nitrification-denitrification mediated by suspended particulate matter
- Zhu, Weijing, Wang, Cheng, Hill, Jaclyn M, He, Yangyang, Tao, Bangyi, Mao, Zhihua, Wu, Weixiang
- Authors: Zhu, Weijing , Wang, Cheng , Hill, Jaclyn M , He, Yangyang , Tao, Bangyi , Mao, Zhihua , Wu, Weixiang
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68368 , vital:29244 , https://0-doi.org.wam.seals.ac.za/10.1038/s41598-018-20688-4
- Description: In estuarine and coastal ecosystems, the majority of previous studies have considered coupled nitrification-denitrification (CND) processes to be exclusively sediment based, with little focus onsuspended particulate matter (SPM) in the water column. Here, we present evidence of CND processes in the water column of Hangzhou Bay, one of the largest macrotidal embayments in the world.
- Full Text:
- Date Issued: 2018
- Authors: Zhu, Weijing , Wang, Cheng , Hill, Jaclyn M , He, Yangyang , Tao, Bangyi , Mao, Zhihua , Wu, Weixiang
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68368 , vital:29244 , https://0-doi.org.wam.seals.ac.za/10.1038/s41598-018-20688-4
- Description: In estuarine and coastal ecosystems, the majority of previous studies have considered coupled nitrification-denitrification (CND) processes to be exclusively sediment based, with little focus onsuspended particulate matter (SPM) in the water column. Here, we present evidence of CND processes in the water column of Hangzhou Bay, one of the largest macrotidal embayments in the world.
- Full Text:
- Date Issued: 2018
Contrasting responses in the niches of two coral reef herbivores along a gradient of habitat disturbance in the Spermonde Archipelago, Indonesia
- Plass-Johnson, Jeremiah G, Bednarz, Vanessa N, Hill, Jaclyn M, Jompa, Jamaluddin, Ferse, Sebastian C A, Teichberg, Mirta
- Authors: Plass-Johnson, Jeremiah G , Bednarz, Vanessa N , Hill, Jaclyn M , Jompa, Jamaluddin , Ferse, Sebastian C A , Teichberg, Mirta
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/69135 , vital:29398 , hhttps://doi.org/10.3389/fmars.2018.00032
- Description: Habitat modification of coral reefs is becoming increasingly common due to increases in coastal urban populations. Coral reef fish are highly dependent on benthic habitat; however, information on species-specific responses to habitat change, in particular with regard to trophic strategies, remains scarce. This study identifies variation in the trophic niches of two herbivorous coral reef fishes with contrasting trophic strategies, using Stable Isotopes Bayesian Ellipses in R, along a spatial gradient of changing coral reef habitats. In the parrotfish Chlorurus bleekeri, a roving consumer, the range of δ15N and δ13C and their niche area displayed significant relationships with the amount of rubble in the habitat. In contrast, the farming damselfish, Dischistodus prosopotaenia, showed a narrow range of both δ15N and δ13C, displaying little change in niche parameters among sites. This may indicate that parrotfish vary their feeding according to habitat, while the damselfish continue to maintain their turf and invertebrate resources. Assessing isotopic niches may help to better understand the specific trophic responses to change in the environment. Furthermore, the use of isotopic niches underlines the utility of stable isotopes in studying the potential impacts of environmental change on feeding ecology.
- Full Text:
- Date Issued: 2018
- Authors: Plass-Johnson, Jeremiah G , Bednarz, Vanessa N , Hill, Jaclyn M , Jompa, Jamaluddin , Ferse, Sebastian C A , Teichberg, Mirta
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/69135 , vital:29398 , hhttps://doi.org/10.3389/fmars.2018.00032
- Description: Habitat modification of coral reefs is becoming increasingly common due to increases in coastal urban populations. Coral reef fish are highly dependent on benthic habitat; however, information on species-specific responses to habitat change, in particular with regard to trophic strategies, remains scarce. This study identifies variation in the trophic niches of two herbivorous coral reef fishes with contrasting trophic strategies, using Stable Isotopes Bayesian Ellipses in R, along a spatial gradient of changing coral reef habitats. In the parrotfish Chlorurus bleekeri, a roving consumer, the range of δ15N and δ13C and their niche area displayed significant relationships with the amount of rubble in the habitat. In contrast, the farming damselfish, Dischistodus prosopotaenia, showed a narrow range of both δ15N and δ13C, displaying little change in niche parameters among sites. This may indicate that parrotfish vary their feeding according to habitat, while the damselfish continue to maintain their turf and invertebrate resources. Assessing isotopic niches may help to better understand the specific trophic responses to change in the environment. Furthermore, the use of isotopic niches underlines the utility of stable isotopes in studying the potential impacts of environmental change on feeding ecology.
- Full Text:
- Date Issued: 2018
NMR structural elucidation of channaine, an unusual alkaloid from Sceletium tortuosum:
- Veale, Clinton G L, Chen, Weiyang, Chaudhary, Sushil, Kituyi, Sarah N, Isaacs, Michelle, Hoppe, Heinrich C, Edkins, Adrienne L, Combrinck, Sandra, Mehari, Bewketu, Viljoen, Alvaro
- Authors: Veale, Clinton G L , Chen, Weiyang , Chaudhary, Sushil , Kituyi, Sarah N , Isaacs, Michelle , Hoppe, Heinrich C , Edkins, Adrienne L , Combrinck, Sandra , Mehari, Bewketu , Viljoen, Alvaro
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/164345 , vital:41110 , DOI: 10.1016/j.phytol.2017.11.018
- Description: Chemical interrogation of the Sceletium genus and Amaryllidaceae family of plants has yielded a diverse array of aryl-hydroindole containing alkaloids. Included in this class is channaine, which was tentatively identified, without comprehensive structural elucidation from Sceletium tortuosum in 1957. Following its isolation from S. strictum, the structure of channaine was eventually resolved by X-ray crystallographic analysis, which revealed an unusual cage-like ring structure at the interface of two aryl-hydroindole subunits. However, since this report in 1978, channaine has not re-appeared in the literature. In this letter, the full NMR characterisation of channaine, isolated from S. tortuosum collected from St Helena in the Western Cape Province of South Africa, is reported for the first time.
- Full Text:
- Date Issued: 2018
- Authors: Veale, Clinton G L , Chen, Weiyang , Chaudhary, Sushil , Kituyi, Sarah N , Isaacs, Michelle , Hoppe, Heinrich C , Edkins, Adrienne L , Combrinck, Sandra , Mehari, Bewketu , Viljoen, Alvaro
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/164345 , vital:41110 , DOI: 10.1016/j.phytol.2017.11.018
- Description: Chemical interrogation of the Sceletium genus and Amaryllidaceae family of plants has yielded a diverse array of aryl-hydroindole containing alkaloids. Included in this class is channaine, which was tentatively identified, without comprehensive structural elucidation from Sceletium tortuosum in 1957. Following its isolation from S. strictum, the structure of channaine was eventually resolved by X-ray crystallographic analysis, which revealed an unusual cage-like ring structure at the interface of two aryl-hydroindole subunits. However, since this report in 1978, channaine has not re-appeared in the literature. In this letter, the full NMR characterisation of channaine, isolated from S. tortuosum collected from St Helena in the Western Cape Province of South Africa, is reported for the first time.
- Full Text:
- Date Issued: 2018
No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations:
- Kimuda, Magambo P, Noyes, Harry, Mulindwa, Julius, Enyaru, John, Alibu, Vincent P, Sidibe, Issa, Mumba Ngoyi, Dieuodonne, Hertz-Fowler, Christiane, MacLeod, Annette, Tastan Bishop, Özlem, Matovu, Enock
- Authors: Kimuda, Magambo P , Noyes, Harry , Mulindwa, Julius , Enyaru, John , Alibu, Vincent P , Sidibe, Issa , Mumba Ngoyi, Dieuodonne , Hertz-Fowler, Christiane , MacLeod, Annette , Tastan Bishop, Özlem , Matovu, Enock
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162924 , vital:40997 , https://doi.org/10.1371/journal.pntd.0006300
- Description: Human African trypanosomiasis (HAT) manifests as an acute form caused by Trypanosoma brucei rhodesiense (Tbr) and a chronic form caused by Trypanosoma brucei gambiense (Tbg). Previous studies have suggested a host genetic role in infection outcomes, particularly for APOL1. We have undertaken candidate gene association studies (CGAS) in a Ugandan Tbr and a Tbg HAT endemic area, to determine whether polymorphisms in IL10, IL8, IL4, HLAG, TNFA, TNX4LB, IL6, IFNG, MIF, APOL1, HLAA, IL1B, IL4R, IL12B, IL12R, HP, HPR, and CFH have a role in HAT.
- Full Text:
- Date Issued: 2018
- Authors: Kimuda, Magambo P , Noyes, Harry , Mulindwa, Julius , Enyaru, John , Alibu, Vincent P , Sidibe, Issa , Mumba Ngoyi, Dieuodonne , Hertz-Fowler, Christiane , MacLeod, Annette , Tastan Bishop, Özlem , Matovu, Enock
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162924 , vital:40997 , https://doi.org/10.1371/journal.pntd.0006300
- Description: Human African trypanosomiasis (HAT) manifests as an acute form caused by Trypanosoma brucei rhodesiense (Tbr) and a chronic form caused by Trypanosoma brucei gambiense (Tbg). Previous studies have suggested a host genetic role in infection outcomes, particularly for APOL1. We have undertaken candidate gene association studies (CGAS) in a Ugandan Tbr and a Tbg HAT endemic area, to determine whether polymorphisms in IL10, IL8, IL4, HLAG, TNFA, TNX4LB, IL6, IFNG, MIF, APOL1, HLAA, IL1B, IL4R, IL12B, IL12R, HP, HPR, and CFH have a role in HAT.
- Full Text:
- Date Issued: 2018
The contributions of biological control to reduced plant size and biomass of water hyacinth populations
- Jones, Roy W, Hill, Jaclyn M, Coetzee, Julie A, Hill, Martin P
- Authors: Jones, Roy W , Hill, Jaclyn M , Coetzee, Julie A , Hill, Martin P
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68803 , vital:29326 , https://0-doi.org.wam.seals.ac.za/10.1007/s10750-017-3413-y
- Description: Water hyacinth is invasive in many countries, where it reduces aquatic biodiversity and limits water resource utilisation. Biological control of water hyacinth has been successful in South Africa, but has suffered from a lack of empirical data to prove causation. Insect exclusion trials were conducted to quantify the contribution of Neochetina eichhorniae and N. bruchi to the integrated control of water hyacinth on the Nseleni River, South Africa. Insecticide was not expected to induce phytotoxicity, but would prevent weevil damage in water hyacinth plants; and weevil herbivory was predicted to reduce plant petiole length, and above/below surface biomass. Results showed that insecticide had no phytotoxic effects and excluded weevils for 3 weeks, providing a baseline for field applications. Biological control on the Nseleni River directly affected water hyacinth biomass and petiole length, but did not affect plant cover. Plants subject to weevil herbivory demonstrated reductions in above and below surface biomass and had shorter petioles compared to insect-free plants. Dead biomass was also higher in biological control treatments. Biological control strongly affects plant size, biomass and vigour; however, further integrated control is required to facilitate reduction in mat cover, which is the goalpost for successful control of floating aquatic plants.
- Full Text: false
- Date Issued: 2018
- Authors: Jones, Roy W , Hill, Jaclyn M , Coetzee, Julie A , Hill, Martin P
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68803 , vital:29326 , https://0-doi.org.wam.seals.ac.za/10.1007/s10750-017-3413-y
- Description: Water hyacinth is invasive in many countries, where it reduces aquatic biodiversity and limits water resource utilisation. Biological control of water hyacinth has been successful in South Africa, but has suffered from a lack of empirical data to prove causation. Insect exclusion trials were conducted to quantify the contribution of Neochetina eichhorniae and N. bruchi to the integrated control of water hyacinth on the Nseleni River, South Africa. Insecticide was not expected to induce phytotoxicity, but would prevent weevil damage in water hyacinth plants; and weevil herbivory was predicted to reduce plant petiole length, and above/below surface biomass. Results showed that insecticide had no phytotoxic effects and excluded weevils for 3 weeks, providing a baseline for field applications. Biological control on the Nseleni River directly affected water hyacinth biomass and petiole length, but did not affect plant cover. Plants subject to weevil herbivory demonstrated reductions in above and below surface biomass and had shorter petioles compared to insect-free plants. Dead biomass was also higher in biological control treatments. Biological control strongly affects plant size, biomass and vigour; however, further integrated control is required to facilitate reduction in mat cover, which is the goalpost for successful control of floating aquatic plants.
- Full Text: false
- Date Issued: 2018
The party-state in the land occupations of Zimbabwe: the case of Shamva district
- Bhatasara, Sandra, Helliker, Kirk D
- Authors: Bhatasara, Sandra , Helliker, Kirk D
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/71353 , vital:29836 , https://doi.org/10.1177/0021909616658316
- Description: There has been significant debate about the land occupations which occurred from the year 2000 in Zimbabwe, with a key controversy concerning the role of the state and ruling party (or party-state) in the occupations. This controversy, deriving from two grand narratives about the occupations, remains unresolved. A burgeoning literature exists on the Zimbabwean state’s fast-track land reform programme, which arose in the context of the occupations, but this literature is concerned mainly with post-occupation developments on fast-track farms. This article seeks to contribute to resolving the controversy surrounding the party-state and the land occupations by examining the occupations in the Shamva District of Mashonaland Central Province. The fieldwork for our Shamva study focused exclusively on the land occupations (and not on the fast-track farms) and was undertaken in May 2015. We conclude from our Shamva study that involvement by the party-state did not take on an institutionalised form but was of a personalised character entailing interventions by specific party and state actors.
- Full Text: false
- Date Issued: 2018
- Authors: Bhatasara, Sandra , Helliker, Kirk D
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/71353 , vital:29836 , https://doi.org/10.1177/0021909616658316
- Description: There has been significant debate about the land occupations which occurred from the year 2000 in Zimbabwe, with a key controversy concerning the role of the state and ruling party (or party-state) in the occupations. This controversy, deriving from two grand narratives about the occupations, remains unresolved. A burgeoning literature exists on the Zimbabwean state’s fast-track land reform programme, which arose in the context of the occupations, but this literature is concerned mainly with post-occupation developments on fast-track farms. This article seeks to contribute to resolving the controversy surrounding the party-state and the land occupations by examining the occupations in the Shamva District of Mashonaland Central Province. The fieldwork for our Shamva study focused exclusively on the land occupations (and not on the fast-track farms) and was undertaken in May 2015. We conclude from our Shamva study that involvement by the party-state did not take on an institutionalised form but was of a personalised character entailing interventions by specific party and state actors.
- Full Text: false
- Date Issued: 2018
Unraveling the Motions behind Enterovirus 71 Uncoating:
- Ross, Caroline J, Atilgan, Ali R, Tastan Bishop, Özlem, Atilgan, Canan
- Authors: Ross, Caroline J , Atilgan, Ali R , Tastan Bishop, Özlem , Atilgan, Canan
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148158 , vital:38715 , DOI: 10.1016/j.bpj.2017.12.021
- Description: Enterovirus 71 can be a severe pathogen in small children and immunocompromised adults. Virus uncoating is a critical step in the infection of the host cell; however, the mechanisms that control this process remain poorly understood. We applied normal mode analysis and perturbation response scanning to several complexes of the virus capsid and present a coarse-graining approach to analyze the full capsid. We show that our method offers an alternative to expressing the system as a set of rigid blocks and accounts for the interconnection between nodes within each subunit and protein interfaces across the capsid. In our coarse-grained approach, the modes associated with capsid expansion are captured in the first three nondegenerate modes and correspond to the changes observed in structural studies of the virus. We show that the resolution of the analysis may be modified without losing information on the global motions leading to uncoating.
- Full Text:
- Date Issued: 2018
- Authors: Ross, Caroline J , Atilgan, Ali R , Tastan Bishop, Özlem , Atilgan, Canan
- Date: 2018
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148158 , vital:38715 , DOI: 10.1016/j.bpj.2017.12.021
- Description: Enterovirus 71 can be a severe pathogen in small children and immunocompromised adults. Virus uncoating is a critical step in the infection of the host cell; however, the mechanisms that control this process remain poorly understood. We applied normal mode analysis and perturbation response scanning to several complexes of the virus capsid and present a coarse-graining approach to analyze the full capsid. We show that our method offers an alternative to expressing the system as a set of rigid blocks and accounts for the interconnection between nodes within each subunit and protein interfaces across the capsid. In our coarse-grained approach, the modes associated with capsid expansion are captured in the first three nondegenerate modes and correspond to the changes observed in structural studies of the virus. We show that the resolution of the analysis may be modified without losing information on the global motions leading to uncoating.
- Full Text:
- Date Issued: 2018
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