Reproductive isolation mechanisms of two cryptic species of Eccritotarsus (Hemiptera: Miridae), biological control agents of water hyacinth, Eichhornia crassipes (Martius) Solms-Laubach (Pontederiaceae)
- Authors: Mnguni, Sandiso
- Date: 2019
- Subjects: Eccritotarsus , Meridae , Noxious weeds -- Biological control -- South Africa , Aquatic weeds -- Biological control -- South Africa , Water hyacinth -- Biological control -- South Africa , Biological pest control agents
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68133 , vital:29202
- Description: Water hyacinth, Eichhornia crassipes (Martius) Solms-Laubach (Pontederiaceae), is one of the world’s worst alien invasive plants. It is indigenous to the Amazon basin in South America but has become a problematic alien invasive in other parts of the world. As such, several host-specific biological control agents have been sourced from the native distributions in South America and have been released to control this plant where it has become problematic. Two of these agents include the geographically and reproductively isolated cryptic species of Eccritotarsus (Hemiptera: Miridae). One of these species was collected in the upper reaches of the Amazon River in Peru, while the other was collected over 3500km away from that site, in Florianopolis, southern Brazil. These cryptic species were thought to be a single species until recently, when DNA barcoding indicated that they were likely to be two species, and the species status has now been confirmed by interbreeding experiments and detailed morphological studies. The Brazilian population remains Eccritotarsus catarinensis (Carvalho), while the Peruvian population is now known as Eccritotarsus eichhorniae (Henry). The aim of this project was to investigate the mating behaviour and other behavioural traits of the two species that have resulted in reproductive isolation, and which could have led to speciation. In addition, investigations involving analysis of chemical compound compositions of the two species aimed to determine the extent to which the compounds played a role in the development and maintenance of reproductive isolation. To achieve the aims, behavioural-observation experiments were conducted in the form of no-choice, bi-choice and multi-choice tests in 1:1, 2:1 and 3:1 sex ratio assessments, both within and between species. Chemical compound compositions of E. catarinensis and E. eichhorniae were also assessed using Nuclear Magnetic Resonance (NMR), Solid-phase micro-extraction (SPME) and Gas-Chromatography Mass-Spectrometry (GC-MS) techniques. In no-choice experiments, the highest number of single and multiple copula incidences, and average total copula duration was found within species while copulation between species was much rarer. In bi-choice experiments, E. eichhorniae females and E. catarinensis males only chose to mate with their respective conspecifics, and within species copulations continued to have higher average total copula duration. In multi-choice experiments, the highest number of single and multiple copula incidences and average total copula duration was also found within species. GC-MS analysis suggested that E. catarinensis females and E. eichhorniae males have unique chemical compounds missing in their conspecifics and same sex of the other species. Further analysis suggested that E. catarinensis females and E. eichhorniae males have similar chemical compound compositions, whereas as E. eichhorniae females and E. catarinensis males have similar chemical compound compositions. These results suggest that there are behavioural differences that led to the development and maintenance of prezygotic reproductive isolation mechanisms, and that this is probably driven by pheromones in chemical compound compositions. These two species were geographically isolated in the native range and the populations have diverged to the point that they are now reproductively incompatible and therefore, distinct species. The main driver of the speciation is most likely mate recognition and attraction, as only reproductively important traits such as pheromones, genitalia, the scent glands and antennae have changed, while other traits, including host range and morphology, have remained remarkably stable. This provides evidence that differences in sexual selection in isolated populations may be important drivers of speciation and reproductive isolation in cryptic species.
- Full Text:
- Date Issued: 2019
- Authors: Mnguni, Sandiso
- Date: 2019
- Subjects: Eccritotarsus , Meridae , Noxious weeds -- Biological control -- South Africa , Aquatic weeds -- Biological control -- South Africa , Water hyacinth -- Biological control -- South Africa , Biological pest control agents
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68133 , vital:29202
- Description: Water hyacinth, Eichhornia crassipes (Martius) Solms-Laubach (Pontederiaceae), is one of the world’s worst alien invasive plants. It is indigenous to the Amazon basin in South America but has become a problematic alien invasive in other parts of the world. As such, several host-specific biological control agents have been sourced from the native distributions in South America and have been released to control this plant where it has become problematic. Two of these agents include the geographically and reproductively isolated cryptic species of Eccritotarsus (Hemiptera: Miridae). One of these species was collected in the upper reaches of the Amazon River in Peru, while the other was collected over 3500km away from that site, in Florianopolis, southern Brazil. These cryptic species were thought to be a single species until recently, when DNA barcoding indicated that they were likely to be two species, and the species status has now been confirmed by interbreeding experiments and detailed morphological studies. The Brazilian population remains Eccritotarsus catarinensis (Carvalho), while the Peruvian population is now known as Eccritotarsus eichhorniae (Henry). The aim of this project was to investigate the mating behaviour and other behavioural traits of the two species that have resulted in reproductive isolation, and which could have led to speciation. In addition, investigations involving analysis of chemical compound compositions of the two species aimed to determine the extent to which the compounds played a role in the development and maintenance of reproductive isolation. To achieve the aims, behavioural-observation experiments were conducted in the form of no-choice, bi-choice and multi-choice tests in 1:1, 2:1 and 3:1 sex ratio assessments, both within and between species. Chemical compound compositions of E. catarinensis and E. eichhorniae were also assessed using Nuclear Magnetic Resonance (NMR), Solid-phase micro-extraction (SPME) and Gas-Chromatography Mass-Spectrometry (GC-MS) techniques. In no-choice experiments, the highest number of single and multiple copula incidences, and average total copula duration was found within species while copulation between species was much rarer. In bi-choice experiments, E. eichhorniae females and E. catarinensis males only chose to mate with their respective conspecifics, and within species copulations continued to have higher average total copula duration. In multi-choice experiments, the highest number of single and multiple copula incidences and average total copula duration was also found within species. GC-MS analysis suggested that E. catarinensis females and E. eichhorniae males have unique chemical compounds missing in their conspecifics and same sex of the other species. Further analysis suggested that E. catarinensis females and E. eichhorniae males have similar chemical compound compositions, whereas as E. eichhorniae females and E. catarinensis males have similar chemical compound compositions. These results suggest that there are behavioural differences that led to the development and maintenance of prezygotic reproductive isolation mechanisms, and that this is probably driven by pheromones in chemical compound compositions. These two species were geographically isolated in the native range and the populations have diverged to the point that they are now reproductively incompatible and therefore, distinct species. The main driver of the speciation is most likely mate recognition and attraction, as only reproductively important traits such as pheromones, genitalia, the scent glands and antennae have changed, while other traits, including host range and morphology, have remained remarkably stable. This provides evidence that differences in sexual selection in isolated populations may be important drivers of speciation and reproductive isolation in cryptic species.
- Full Text:
- Date Issued: 2019
Secret sex lives in the intertidal: insights into the mating systems of clinid fishes from molecular parentage analyses
- Authors: Scheeper, Martinus Johannes
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72438 , vital:30048
- Description: Expected release date-April 2020
- Full Text: false
- Date Issued: 2019
- Authors: Scheeper, Martinus Johannes
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/72438 , vital:30048
- Description: Expected release date-April 2020
- Full Text: false
- Date Issued: 2019
Selected Namibian secondary school geography teachers’ pedagogical thinking and practices: the case of mapwork
- Naxweka, Johanna Ndamononghenda
- Authors: Naxweka, Johanna Ndamononghenda
- Date: 2019
- Subjects: Geography -- Study and teaching (Secondary) -- Namibia , Cartography -- Study and teaching (Secondary) -- Namibia , Maps -- Study and teaching (Secondary) -- Namibia
- Language: English
- Type: text , Thesis , Masters , MEd
- Identifier: http://hdl.handle.net/10962/76969 , vital:30651
- Description: Learner performance in mapwork in secondary school geography in Namibia has been consistently poor. Examiners’ reports provide detailed feedback on the difficulties learners demonstrate with little, if any, attention paid to teachers’ perceptions, experiences and pedagogical practices of mapwork. This qualitative study generated insights to understand selected geography teachers’ perceptions and pedagogical practices of mapwork. Data were generated through a questionnaire administered to thirty geography teachers in fifteen secondary schools in the Ohangwena Circuit in the Ohangwena Region of Namibia. The teachers’ responses were coded and analyzed and patterns and trends identified. Based on what emerged, a purposive sample of three teachers was chosen for in-depth interviews to probe their responses and to observe their classroom practices. The study draws on learner centred pedagogy (LCP), the official educational policy in Namibia, and Shulman’s perspectives of teachers’ content and pedagogical content knowledge (PCK) (1986, 1987) to interpret what teachers say about the teaching of mapwork and how they teach it. The qualities of teachers’ PCK that support student learning in mapwork are not yet fully understood because there has been little research on teachers’ PCK for teaching mapwork and spatial thinking in geography classrooms (Jo & Bednarz, 2014). The study sheds light on the teachers’ qualifications and experience, their perceptions and attitudes towards the teaching of mapwork, their teaching strategies and the resources they use. The findings reveal that the teachers are conscientious but ill-equipped to teach mapwork. The study illuminated a disjuncture between the rhetoric and practice of learner centred pedagogy. There is evidence which suggests that the teachers’ knowledge of the curriculum is superficial and limited to content. Their practices are focused on teaching map skills and procedural knowledge with little, if any, attention given to spatial and map conceptual understanding and application of knowledge to solve problems. The study concludes that teachers’ map and spatial conceptual understanding and pedagogical content knowledge should be strengthened if the persistent problem of poor learner attainment is to be resolved. It provides insights that may be of value to Namibian teachers, teacher educators, curriculum policy developers and Senior Education Officers when addressing this problem.
- Full Text:
- Date Issued: 2019
- Authors: Naxweka, Johanna Ndamononghenda
- Date: 2019
- Subjects: Geography -- Study and teaching (Secondary) -- Namibia , Cartography -- Study and teaching (Secondary) -- Namibia , Maps -- Study and teaching (Secondary) -- Namibia
- Language: English
- Type: text , Thesis , Masters , MEd
- Identifier: http://hdl.handle.net/10962/76969 , vital:30651
- Description: Learner performance in mapwork in secondary school geography in Namibia has been consistently poor. Examiners’ reports provide detailed feedback on the difficulties learners demonstrate with little, if any, attention paid to teachers’ perceptions, experiences and pedagogical practices of mapwork. This qualitative study generated insights to understand selected geography teachers’ perceptions and pedagogical practices of mapwork. Data were generated through a questionnaire administered to thirty geography teachers in fifteen secondary schools in the Ohangwena Circuit in the Ohangwena Region of Namibia. The teachers’ responses were coded and analyzed and patterns and trends identified. Based on what emerged, a purposive sample of three teachers was chosen for in-depth interviews to probe their responses and to observe their classroom practices. The study draws on learner centred pedagogy (LCP), the official educational policy in Namibia, and Shulman’s perspectives of teachers’ content and pedagogical content knowledge (PCK) (1986, 1987) to interpret what teachers say about the teaching of mapwork and how they teach it. The qualities of teachers’ PCK that support student learning in mapwork are not yet fully understood because there has been little research on teachers’ PCK for teaching mapwork and spatial thinking in geography classrooms (Jo & Bednarz, 2014). The study sheds light on the teachers’ qualifications and experience, their perceptions and attitudes towards the teaching of mapwork, their teaching strategies and the resources they use. The findings reveal that the teachers are conscientious but ill-equipped to teach mapwork. The study illuminated a disjuncture between the rhetoric and practice of learner centred pedagogy. There is evidence which suggests that the teachers’ knowledge of the curriculum is superficial and limited to content. Their practices are focused on teaching map skills and procedural knowledge with little, if any, attention given to spatial and map conceptual understanding and application of knowledge to solve problems. The study concludes that teachers’ map and spatial conceptual understanding and pedagogical content knowledge should be strengthened if the persistent problem of poor learner attainment is to be resolved. It provides insights that may be of value to Namibian teachers, teacher educators, curriculum policy developers and Senior Education Officers when addressing this problem.
- Full Text:
- Date Issued: 2019
Shifting white SADF veteran identities from apartheid to contemporary South Africa
- Authors: Weich, Francois
- Date: 2019
- Subjects: South Africa -- History -- 1961-1994 , Angola -- History -- South African Incursions, 1978-1990 -- Veterans , South Africa -- History, Military -- 1961- , Veterans -- South Africa -- Personal narratives , South Africa -- Armed forces , South Africa -- Politics and government -- 1961-1978 , South Africa -- Politics and government -- 1978-1989 , South Africa. South African Defence Force
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/76106 , vital:30504
- Description: The ideologies and structures of the apartheid state have received extensive academic attention, but the legacies of the militarisation of white South African men – a group that exists at a unique intersection of apartheid privilege and exploitation – have not been sufficiently addressed. Even as beneficiaries of apartheid, white men were militarised through structures of coercion and the mobilisation of identity constructions that resulted in the widespread submission to conscription and support for apartheid militarism. This thesis explores the relationship between those militarised identities and the historical processes of apartheid through a consideration of a broad range of white SADF veteran narratives from the Missing Voices Oral History Project archive. This consideration of the role of identity mobilisation in apartheid can shed light on the effect of historical processes of militarisation on white men in South Africa, as well as address the persistence of values and behaviours that may present barriers to the social transformation of South Africa towards a true constitutional democracy. The thesis explores identity in SADF veteran narratives through the application of social constructionism in order to determine the effect of coercive structures and identity mobilisation on individuals, and to gauge the persistence militarised identities after the social and political structures underpinning them had become defunct. The identity content of the narratives is contextualised in relation to structures of coercion employed by the apartheid state and the SADF alongside a consideration of the effect of political transition on veterans. The legacy of the historical environment and the impact of political transition on SADF veterans’ constructed identities is investigated in relation to these veterans’ own visions of their roles in post-apartheid South Africa. Therefore, this thesis endeavours to contribute to the expansion of the field of historical and identity study by considering the construction and renegotiation of military identities that maintained, benefited from, and were exploited by the apartheid state.
- Full Text:
- Date Issued: 2019
- Authors: Weich, Francois
- Date: 2019
- Subjects: South Africa -- History -- 1961-1994 , Angola -- History -- South African Incursions, 1978-1990 -- Veterans , South Africa -- History, Military -- 1961- , Veterans -- South Africa -- Personal narratives , South Africa -- Armed forces , South Africa -- Politics and government -- 1961-1978 , South Africa -- Politics and government -- 1978-1989 , South Africa. South African Defence Force
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/76106 , vital:30504
- Description: The ideologies and structures of the apartheid state have received extensive academic attention, but the legacies of the militarisation of white South African men – a group that exists at a unique intersection of apartheid privilege and exploitation – have not been sufficiently addressed. Even as beneficiaries of apartheid, white men were militarised through structures of coercion and the mobilisation of identity constructions that resulted in the widespread submission to conscription and support for apartheid militarism. This thesis explores the relationship between those militarised identities and the historical processes of apartheid through a consideration of a broad range of white SADF veteran narratives from the Missing Voices Oral History Project archive. This consideration of the role of identity mobilisation in apartheid can shed light on the effect of historical processes of militarisation on white men in South Africa, as well as address the persistence of values and behaviours that may present barriers to the social transformation of South Africa towards a true constitutional democracy. The thesis explores identity in SADF veteran narratives through the application of social constructionism in order to determine the effect of coercive structures and identity mobilisation on individuals, and to gauge the persistence militarised identities after the social and political structures underpinning them had become defunct. The identity content of the narratives is contextualised in relation to structures of coercion employed by the apartheid state and the SADF alongside a consideration of the effect of political transition on veterans. The legacy of the historical environment and the impact of political transition on SADF veterans’ constructed identities is investigated in relation to these veterans’ own visions of their roles in post-apartheid South Africa. Therefore, this thesis endeavours to contribute to the expansion of the field of historical and identity study by considering the construction and renegotiation of military identities that maintained, benefited from, and were exploited by the apartheid state.
- Full Text:
- Date Issued: 2019
Social movements and economic development in post apartheid South Africa: lessons from Latin America
- Authors: Makoni, Tinotenda Charity
- Date: 2019
- Subjects: South Africa -- Economic conditions -- 1991- , South Africa -- Politics and government -- 1994- , Social movements -- South Africa , Social movements -- Latin America , Economic development -- South Africa
- Language: English
- Type: text , Thesis , Masters , MCom
- Identifier: http://hdl.handle.net/10962/76420 , vital:30561
- Description: The aim of this research is to bring the literature on political agency and economics together in an analysis of whether social movements can play an important role in economic development in post-apartheid South Africa. The entrenched discourse of sluggish growth and high inequality in post-apartheid South Africa can largely be attributed to the political decision to implement a neoliberal economic development orthodoxy. On the one hand, there is an urgent need to shift the economic development model to an alternate developmentalist model. However, no clearly articulated alternative developmental model has emerged. As a result, economically, South Africa is seemingly stuck. On the other hand, the selection of an economic development model and change in macroeconomic policies requires a political shift. Politically, formal politics has assumed the form of neoliberal democracy, characterised by a largely centralised state and the usurpation of the state and institutions by a national bourgeoisie. Social movements have emerged in response to the failure of neoliberalism to fulfil the promises of early post independent periods. They have been largely successful at highlighting the injustices and the inequalities in the country. However their ability to influence structural economic development has come into question. Firstly, social movements and their “politically destabilising distributive demands” have faced repression from the state as the state and institutions are aligned behind the interests of capital under a neoliberal democracy. Secondly, social movements in South Africa have been largely ideologically under-developed. They have been largely fragmented and tended to contest specific single issues rather than aiming to shift the deeper underlying systemic drivers behind the symptomatic immediate discomforts. The economic dimensions of such a shift are particularly unclear. This fragmentation and apparent lack of economic pragmatism make management or suppression of disruptive movements by the state relatively easy. The research uses a contrast between the Latin American social movements against a South African background in order to see what lessons South Africa can draw from social movements in Latin America. The Latin American case is cautiously more positive and provides comparably more sanguine lessons. In this way, this research seeks to construct a more comprehensive framework for the further study of social movements in South Africa and their potential impact on economic development in South Africa.
- Full Text:
- Date Issued: 2019
Social movements and economic development in post apartheid South Africa: lessons from Latin America
- Authors: Makoni, Tinotenda Charity
- Date: 2019
- Subjects: South Africa -- Economic conditions -- 1991- , South Africa -- Politics and government -- 1994- , Social movements -- South Africa , Social movements -- Latin America , Economic development -- South Africa
- Language: English
- Type: text , Thesis , Masters , MCom
- Identifier: http://hdl.handle.net/10962/76420 , vital:30561
- Description: The aim of this research is to bring the literature on political agency and economics together in an analysis of whether social movements can play an important role in economic development in post-apartheid South Africa. The entrenched discourse of sluggish growth and high inequality in post-apartheid South Africa can largely be attributed to the political decision to implement a neoliberal economic development orthodoxy. On the one hand, there is an urgent need to shift the economic development model to an alternate developmentalist model. However, no clearly articulated alternative developmental model has emerged. As a result, economically, South Africa is seemingly stuck. On the other hand, the selection of an economic development model and change in macroeconomic policies requires a political shift. Politically, formal politics has assumed the form of neoliberal democracy, characterised by a largely centralised state and the usurpation of the state and institutions by a national bourgeoisie. Social movements have emerged in response to the failure of neoliberalism to fulfil the promises of early post independent periods. They have been largely successful at highlighting the injustices and the inequalities in the country. However their ability to influence structural economic development has come into question. Firstly, social movements and their “politically destabilising distributive demands” have faced repression from the state as the state and institutions are aligned behind the interests of capital under a neoliberal democracy. Secondly, social movements in South Africa have been largely ideologically under-developed. They have been largely fragmented and tended to contest specific single issues rather than aiming to shift the deeper underlying systemic drivers behind the symptomatic immediate discomforts. The economic dimensions of such a shift are particularly unclear. This fragmentation and apparent lack of economic pragmatism make management or suppression of disruptive movements by the state relatively easy. The research uses a contrast between the Latin American social movements against a South African background in order to see what lessons South Africa can draw from social movements in Latin America. The Latin American case is cautiously more positive and provides comparably more sanguine lessons. In this way, this research seeks to construct a more comprehensive framework for the further study of social movements in South Africa and their potential impact on economic development in South Africa.
- Full Text:
- Date Issued: 2019
South African Trade Union responses to xenophobia in workplaces: the National Union of Mineworkers (NUM) and the National Union of Metalworkers of South Africa (NUMSA)
- Authors: Gongqa, Nombulelo
- Date: 2019
- Subjects: Xenophobia , Xenophobia-- South Africa , National Union of Mineworkers , National Union of Metalworkers of South Africa , Labor unions -- South Africa , Immigrants -- South Africa , Marginality, Social -- South Africa , Social conflict -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSocSc
- Identifier: http://hdl.handle.net/10962/115061 , vital:34074
- Description: This research looks at how trade unions relate to immigrants and how inclusive they are to immigrants who form part of the South African working class. South Africa has been an immigrants receiving country for decades, where most immigrants are from neighbouring countries within the South African region. It was the trade unions that empowered workers to gain back some of their basic rights during the apartheid era, and they did this for all workers who worked in sectors where they were exploited and mistreated by the apartheid regime on the basis of their skin colour. This research aims to understand how trade unions respond to xenophobia in the workplace, and the ways their strategies increase inclusion of immigrants in the trade unions. This research focuses on the National Union of Mineworkers (NUM) and the National Union of Metalworkers of South Africa (NUMSA), seeking to find whether they have strategies and planned ways to respond to xenophobia in South African workplaces. This research also looks at the impact of nationalism in South Africa on immigrants. It shows that whilst the concept of nationalism is to protect South Africans, it does exclude immigrants because it places South Africans before immigrants when it comes to benefiting from the resources of the country. This shows that protecting one section of the working class over another weakens the working class movement. To get views from the trade unions, trade union officials were interviewed and from the interviews, common themes were picked out. From the interviews, it can be identified that trade union officials believe that immigrants should be included in the trade unions, and they should be treated with dignity. However, there are some conflicting themes, which highlight the view that South African locals deserve to get the resources of the country, such as housing, before immigrants. The themes will be discussed in the research to highlight the different perspectives that came from the trade union officials.
- Full Text:
- Date Issued: 2019
- Authors: Gongqa, Nombulelo
- Date: 2019
- Subjects: Xenophobia , Xenophobia-- South Africa , National Union of Mineworkers , National Union of Metalworkers of South Africa , Labor unions -- South Africa , Immigrants -- South Africa , Marginality, Social -- South Africa , Social conflict -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSocSc
- Identifier: http://hdl.handle.net/10962/115061 , vital:34074
- Description: This research looks at how trade unions relate to immigrants and how inclusive they are to immigrants who form part of the South African working class. South Africa has been an immigrants receiving country for decades, where most immigrants are from neighbouring countries within the South African region. It was the trade unions that empowered workers to gain back some of their basic rights during the apartheid era, and they did this for all workers who worked in sectors where they were exploited and mistreated by the apartheid regime on the basis of their skin colour. This research aims to understand how trade unions respond to xenophobia in the workplace, and the ways their strategies increase inclusion of immigrants in the trade unions. This research focuses on the National Union of Mineworkers (NUM) and the National Union of Metalworkers of South Africa (NUMSA), seeking to find whether they have strategies and planned ways to respond to xenophobia in South African workplaces. This research also looks at the impact of nationalism in South Africa on immigrants. It shows that whilst the concept of nationalism is to protect South Africans, it does exclude immigrants because it places South Africans before immigrants when it comes to benefiting from the resources of the country. This shows that protecting one section of the working class over another weakens the working class movement. To get views from the trade unions, trade union officials were interviewed and from the interviews, common themes were picked out. From the interviews, it can be identified that trade union officials believe that immigrants should be included in the trade unions, and they should be treated with dignity. However, there are some conflicting themes, which highlight the view that South African locals deserve to get the resources of the country, such as housing, before immigrants. The themes will be discussed in the research to highlight the different perspectives that came from the trade union officials.
- Full Text:
- Date Issued: 2019
Statistical study of traveling ionospheric disturbances over South Africa
- Authors: Mahlangu, Daniel Fiso
- Date: 2019
- Subjects: Ionosphere -- Research , Sudden ionospheric disturbances , Gravity waves , Magnetic storms
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/76387 , vital:30556
- Description: This thesis provides a statistical analysis of traveling ionospheric disturbances (TIDs) in South Africa. The velocities of the TIDs were determined from total electron content (TEC) maps using particle image velocimetry (PIV). The periods were determined using Morlet function in wavelet analysis. The TIDs were grouped into four categories: daytime, twilight, nighttime TIDs, and those TIDs that occurred during magnetic storms. It was found that daytime medium scale TIDs (MSTIDs) propagated equatorward in all seasons (summer, autumn, winter, and spring), with velocities of about 114 to 213 m/s. Their maximum occurrence was in winter between 15:00 and 16:00 LT. The daytime large scale (TIDs) LSTIDs propagated equatorward with velocities of approximately 455 to 767 m/s. Their highest occurrence was in summer, between 12:00-13:00 LT. Most of the these TIDs (about 78%) were observed during the passing of the morning solar terminator. This implied that the morning terminator was more effective in instigating TIDs. Only a few nighttime TIDs were observed and therefore their behavior could not be statistically inferred. The TIDs that occurred during magnetically disturbed conditions propagated equatorward. This indicated that their source mechanism was atmospheric gravity waves generated at the onset of geomagnetic storms.
- Full Text:
- Date Issued: 2019
- Authors: Mahlangu, Daniel Fiso
- Date: 2019
- Subjects: Ionosphere -- Research , Sudden ionospheric disturbances , Gravity waves , Magnetic storms
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/76387 , vital:30556
- Description: This thesis provides a statistical analysis of traveling ionospheric disturbances (TIDs) in South Africa. The velocities of the TIDs were determined from total electron content (TEC) maps using particle image velocimetry (PIV). The periods were determined using Morlet function in wavelet analysis. The TIDs were grouped into four categories: daytime, twilight, nighttime TIDs, and those TIDs that occurred during magnetic storms. It was found that daytime medium scale TIDs (MSTIDs) propagated equatorward in all seasons (summer, autumn, winter, and spring), with velocities of about 114 to 213 m/s. Their maximum occurrence was in winter between 15:00 and 16:00 LT. The daytime large scale (TIDs) LSTIDs propagated equatorward with velocities of approximately 455 to 767 m/s. Their highest occurrence was in summer, between 12:00-13:00 LT. Most of the these TIDs (about 78%) were observed during the passing of the morning solar terminator. This implied that the morning terminator was more effective in instigating TIDs. Only a few nighttime TIDs were observed and therefore their behavior could not be statistically inferred. The TIDs that occurred during magnetically disturbed conditions propagated equatorward. This indicated that their source mechanism was atmospheric gravity waves generated at the onset of geomagnetic storms.
- Full Text:
- Date Issued: 2019
Students’ perceptions of their employability as revealed by their understandings of the South African Labour Market
- Authors: Gabobegwe, Maoshadi Keletso
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSocSc
- Identifier: http://hdl.handle.net/10962/71482 , vital:29857
- Description: The state of the South African labour market is characterized −among other things− by inequalities and the chronic issue of unemployment, with a rate that has come up to 27.7% in the third quarter of 2017. Considering this, unemployment in South Africa is explained by numerous authors as a structural issue. In a sense that unemployed people do not have the skills required by the labour market. But, since education attainment improves an individuals’ employment prospects and outcome. It would be expected that people with higher education would have high prospects of getting employment. Yet, people with higher education qualifications also face challenges of obtaining employment. Even though research finds that graduate unemployment is not as bad when compared to general and overall unemployment of the country. It still remains that skills shortages and/or mismatch are deemed to be the main contributor of the South African graduate unemployment. Existing research finds that just as the labour market is characterized with differences on the grounds of gender and race. This also reflects on how graduates enter the labour market. With the white race having more employment outcomes than blacks and males than females. It is against this background that this dissertation set out to explore what Rhodes University final-year students’ −who are nearing the transition from varsity to the labour market− perceive to be their employment prospects and outcomes. Taking into consideration the issue of unemployment and inequalities in the labour market. In essence, one of the key issues that the dissertation focuses on, is what students think of their employability based on their understanding of the labour market. More than that, the dissertation investigates how aspects such as the student’s field of study, race and gender factor into how students understand the labour market and ultimately how they perceive their employment prospects and outcomes. As a consequence, evidence suggests that students’ perceptions of the labour market influences how they perceive their employability. Over and above, the research finds that the students field of study especially, features significantly in how students perceive the labour market and their employability. While race and gender also factored in students’ responses, it was not as significant as compared to their field of study respectively. The general finding is that students are well aware of the issues of the labour market and are concerned about the implications of these issues on their employability. This awareness and concern varied based on students’ field of study, race and gender.
- Full Text:
- Date Issued: 2019
- Authors: Gabobegwe, Maoshadi Keletso
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSocSc
- Identifier: http://hdl.handle.net/10962/71482 , vital:29857
- Description: The state of the South African labour market is characterized −among other things− by inequalities and the chronic issue of unemployment, with a rate that has come up to 27.7% in the third quarter of 2017. Considering this, unemployment in South Africa is explained by numerous authors as a structural issue. In a sense that unemployed people do not have the skills required by the labour market. But, since education attainment improves an individuals’ employment prospects and outcome. It would be expected that people with higher education would have high prospects of getting employment. Yet, people with higher education qualifications also face challenges of obtaining employment. Even though research finds that graduate unemployment is not as bad when compared to general and overall unemployment of the country. It still remains that skills shortages and/or mismatch are deemed to be the main contributor of the South African graduate unemployment. Existing research finds that just as the labour market is characterized with differences on the grounds of gender and race. This also reflects on how graduates enter the labour market. With the white race having more employment outcomes than blacks and males than females. It is against this background that this dissertation set out to explore what Rhodes University final-year students’ −who are nearing the transition from varsity to the labour market− perceive to be their employment prospects and outcomes. Taking into consideration the issue of unemployment and inequalities in the labour market. In essence, one of the key issues that the dissertation focuses on, is what students think of their employability based on their understanding of the labour market. More than that, the dissertation investigates how aspects such as the student’s field of study, race and gender factor into how students understand the labour market and ultimately how they perceive their employment prospects and outcomes. As a consequence, evidence suggests that students’ perceptions of the labour market influences how they perceive their employability. Over and above, the research finds that the students field of study especially, features significantly in how students perceive the labour market and their employability. While race and gender also factored in students’ responses, it was not as significant as compared to their field of study respectively. The general finding is that students are well aware of the issues of the labour market and are concerned about the implications of these issues on their employability. This awareness and concern varied based on students’ field of study, race and gender.
- Full Text:
- Date Issued: 2019
Substituent effects on the electrocatalytic activity of cobalt phthalocyanine in the presence of graphene quantum dots
- Centane, Sixolile Sibongiseni
- Authors: Centane, Sixolile Sibongiseni
- Date: 2019
- Subjects: Phthalocyanines , Quantum dots , Electrocatalysis , Electrochemistry
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67614 , vital:29121
- Description: The electrocatalytic activity of metallophthalocyanines derivatives is explored. Cobalt monocarboxyphenoxy phthalocyanine (1), cobalt tetracarboxyphenoxy phthalocyanine (2), cobalt tetraaminophenoxy phthalocyanine (3) and cobalt tris-(tert-butylphenoxy) monocarboxyphenoxy phthalocyanine (4) are the phthalocyanines employed in this work. The metallophthalocyanines were employed alone as well as in the presence of the carbon based graphene quantum dots. The electrocatalytic behaviour of functionalized GQDs is also explored herein. The catalytic processes studies were conducted on a glassy carbon electrode surface. Modification of the electrode was achieved by the adsorption method. The materials were adsorbed either alone, as premixed/covalently linked GQDs/Pc conjugates or sequentially. Sequentially adsorbed electrodes involved the phthalocyanines on top or beneath GQDs. Sequentially modified electrodes where the phthalocyanine had higher currents and low detection limits than when the phthalocyanine is underneath. Premixed conjugates showed better activity than the covalently formed conjugates. The nanomaterials synthesized and used in this work were characterized using transmission electron microscopy, UV-Vis spectroscopy, dynamic light scattering, Raman spectroscopy, X-ray diffraction, Atomic Force Microscopy and X-ray photoelectron spectroscopy. The modified electrodes were characterized using cyclic voltammetry and scanning electrochemical spectroscopy. The electrocatalytic activity of the modified electrodes towards the oxidation of hydrazine was evaluated using cyclic voltammetry and chronoamperometry. Superior catalytic activity was observed for the conjugates compared to that of the individual conjugates.
- Full Text:
- Date Issued: 2019
- Authors: Centane, Sixolile Sibongiseni
- Date: 2019
- Subjects: Phthalocyanines , Quantum dots , Electrocatalysis , Electrochemistry
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67614 , vital:29121
- Description: The electrocatalytic activity of metallophthalocyanines derivatives is explored. Cobalt monocarboxyphenoxy phthalocyanine (1), cobalt tetracarboxyphenoxy phthalocyanine (2), cobalt tetraaminophenoxy phthalocyanine (3) and cobalt tris-(tert-butylphenoxy) monocarboxyphenoxy phthalocyanine (4) are the phthalocyanines employed in this work. The metallophthalocyanines were employed alone as well as in the presence of the carbon based graphene quantum dots. The electrocatalytic behaviour of functionalized GQDs is also explored herein. The catalytic processes studies were conducted on a glassy carbon electrode surface. Modification of the electrode was achieved by the adsorption method. The materials were adsorbed either alone, as premixed/covalently linked GQDs/Pc conjugates or sequentially. Sequentially adsorbed electrodes involved the phthalocyanines on top or beneath GQDs. Sequentially modified electrodes where the phthalocyanine had higher currents and low detection limits than when the phthalocyanine is underneath. Premixed conjugates showed better activity than the covalently formed conjugates. The nanomaterials synthesized and used in this work were characterized using transmission electron microscopy, UV-Vis spectroscopy, dynamic light scattering, Raman spectroscopy, X-ray diffraction, Atomic Force Microscopy and X-ray photoelectron spectroscopy. The modified electrodes were characterized using cyclic voltammetry and scanning electrochemical spectroscopy. The electrocatalytic activity of the modified electrodes towards the oxidation of hydrazine was evaluated using cyclic voltammetry and chronoamperometry. Superior catalytic activity was observed for the conjugates compared to that of the individual conjugates.
- Full Text:
- Date Issued: 2019
Sulphide textures and compositions associated with the hydrothermal/magmatic system of the Twangiza gold deposit (South Kivu, DRC)
- Authors: Busane, Emmanuel Aganze
- Date: 2019
- Subjects: Gold mines and mining -- Congo (Democratic Republic) , Geology -- Congo (Democratic Republic) , Hydrothermal alteration -- Congo (Democratic Republic) , Sulphide minerals -- Congo (Democratic Republic) , Gold ores -- Geology -- Congo (Democratic Republic) , Geochemistry -- Congo (Democratic Republic) , Twangiza Mine (Congo (Democratic Republic))
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/76588 , vital:30610
- Description: Twangiza mine is a gold deposit situated in the eastern Democratic Republic of Congo. The rock types at the Twangiza Mine consist of black shale, including carbonaceous mudstone and thin intercalated layers of siltstone, and feldspar-rich granitoid intrusive sills, referred to as albitite, folded into a major antiformal structure. The gold mineralization at the mine is commonly found associated with sulphides. The sulphide textures and compositions of mineralized and unmineralized samples of black shales, albitite sills and hydrothermal veins in the mine are considered for the understanding of the spatial association of gold with sulphides and gold mineralization history of the mine. The sulphides within the Twangiza mine consist of pyrite, arsenopyrite, pyrrhotite, chalcopyrite and rare cobaltite. The primary pyrite texture occurs in unmineralized black shale and is interpreted to be diagenetic. It consists of fine-grained anhedral pyrite crystals aggregating into spherical nodules and formed in replacement of organic material during the diagenesis process. The secondary pyrite textures resulted from the hydrothermal fluids activity and include (i) aggregates of annealed anhedral crystals into sulphide-rich lenses; (ii) elongated anhedral pyrite in the form of short stringers; (iii) fine-grained subhedral to euhedral pyrite randomly distributed within the rock matrix; (iv) euhedral zoned pyrite crystals occurring within veins; (v) aggregations of fine-grained anhedral pyrite, locally distributed in the matrix; (vi) abundant dissemination of fine-grained subhedral to anhedral pyrite crystals within the vein selvedge in the host rock; (vii) and coarse-grained massive pyrite bodies. The pyrite major elemental composition does not vary significantly in the different textures and sample types. The Fe content ranges from 44.57 to 46.40 wt. %, and the S content ranges from 53.75 to 55.25 wt. %. Pyrite from mineralized black shale and hydrothermal veins contains relatively higher concentrations of As (~ 1 wt. %) than pyrite from other sample types. The arsenopyrite commonly occurs as fine-grained anhedral crystals as inclusions within pyrite, medium-grained crystal intergrowing with pyrite and/or as coarse-grained massive arsenopyrite bodies in the massive sulphide veins. The arsenopyrite composition is uniform in all textural and sample type with Fe content ranging from 33.44 to 35.20 wt. %, S content ranging from 21.13 to 22.55 wt. % and As content ranging from 42.20 to 43.97 wt. %. In mineralized black shale and unmineralized black shale, the arsenopyrite shows, however, minor concentrations of Ni with 0.39 and 0.70 wt. % respectively. The pyrrhotite occurs as fine-grained anhedral patchy crystals randomly distributed within the rock matrix of unmineralized black shale and unmineralized granitoid, and / or as inclusions within pyrite in mineralized granitoid. The pyrrhotite shows a uniform composition in all samples and textural types, though minor concentrations of Ni (2.06 wt. %) content are reported in unmineralized granitoid. Chalcopyrite occurs as fine-grained crystals in inclusions within pyrite; and cobaltite occurs as rare fine-grained anhedral crystals occasionally disseminated in the albitite sill matrix. The chalcopyrite composition does not vary considerably in all sample and textural types, and cobaltite shows minor concentrations of Ni (4.55 wt. %) and Fe (3.45 wt. %). Native gold grains are commonly found associated with the secondary pyrite texture especially within the sulphide-rich lenses and in the massive sulphide veins, and are almost pure with ~97 wt. %. A Na-rich hydrothermal fluid from low-grade metamorphism associated with the E-W compressive tectonic event, which caused formation of the antiform structure which control the mineralization in the deposit area, led to the albitization of the deposit rocks and specially the alteration of the granitic assemblage to form albitite, and the deposition of aggregates of fine-grained anhedral crystals and growth and annealing of pyrite in sulphide-rich lenses. Afterward, the CO2-rich hydrothermal fluids influx circulated through reactivated structures, including quartz veins, and led to the precipitation of dolomite, ankerite, siderite and magnesite. They also led to the precipitation of pyrite of secondary textures as well as arsenopyrite, chalcopyrite and formation of pyrrhotite from the desulphurization of early pyrite. The CO2-rich hydrothermal fluids probably leached gold and other trace elements such as As, Co, etc. from the sedimentary host rocks and deposited them into suitable traps, such as the sulphide-rich lenses and massive sulphide bodies, preferably within the hinge zone of anticline axis constituting a hydrothermal fluid pathway.
- Full Text:
- Date Issued: 2019
- Authors: Busane, Emmanuel Aganze
- Date: 2019
- Subjects: Gold mines and mining -- Congo (Democratic Republic) , Geology -- Congo (Democratic Republic) , Hydrothermal alteration -- Congo (Democratic Republic) , Sulphide minerals -- Congo (Democratic Republic) , Gold ores -- Geology -- Congo (Democratic Republic) , Geochemistry -- Congo (Democratic Republic) , Twangiza Mine (Congo (Democratic Republic))
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/76588 , vital:30610
- Description: Twangiza mine is a gold deposit situated in the eastern Democratic Republic of Congo. The rock types at the Twangiza Mine consist of black shale, including carbonaceous mudstone and thin intercalated layers of siltstone, and feldspar-rich granitoid intrusive sills, referred to as albitite, folded into a major antiformal structure. The gold mineralization at the mine is commonly found associated with sulphides. The sulphide textures and compositions of mineralized and unmineralized samples of black shales, albitite sills and hydrothermal veins in the mine are considered for the understanding of the spatial association of gold with sulphides and gold mineralization history of the mine. The sulphides within the Twangiza mine consist of pyrite, arsenopyrite, pyrrhotite, chalcopyrite and rare cobaltite. The primary pyrite texture occurs in unmineralized black shale and is interpreted to be diagenetic. It consists of fine-grained anhedral pyrite crystals aggregating into spherical nodules and formed in replacement of organic material during the diagenesis process. The secondary pyrite textures resulted from the hydrothermal fluids activity and include (i) aggregates of annealed anhedral crystals into sulphide-rich lenses; (ii) elongated anhedral pyrite in the form of short stringers; (iii) fine-grained subhedral to euhedral pyrite randomly distributed within the rock matrix; (iv) euhedral zoned pyrite crystals occurring within veins; (v) aggregations of fine-grained anhedral pyrite, locally distributed in the matrix; (vi) abundant dissemination of fine-grained subhedral to anhedral pyrite crystals within the vein selvedge in the host rock; (vii) and coarse-grained massive pyrite bodies. The pyrite major elemental composition does not vary significantly in the different textures and sample types. The Fe content ranges from 44.57 to 46.40 wt. %, and the S content ranges from 53.75 to 55.25 wt. %. Pyrite from mineralized black shale and hydrothermal veins contains relatively higher concentrations of As (~ 1 wt. %) than pyrite from other sample types. The arsenopyrite commonly occurs as fine-grained anhedral crystals as inclusions within pyrite, medium-grained crystal intergrowing with pyrite and/or as coarse-grained massive arsenopyrite bodies in the massive sulphide veins. The arsenopyrite composition is uniform in all textural and sample type with Fe content ranging from 33.44 to 35.20 wt. %, S content ranging from 21.13 to 22.55 wt. % and As content ranging from 42.20 to 43.97 wt. %. In mineralized black shale and unmineralized black shale, the arsenopyrite shows, however, minor concentrations of Ni with 0.39 and 0.70 wt. % respectively. The pyrrhotite occurs as fine-grained anhedral patchy crystals randomly distributed within the rock matrix of unmineralized black shale and unmineralized granitoid, and / or as inclusions within pyrite in mineralized granitoid. The pyrrhotite shows a uniform composition in all samples and textural types, though minor concentrations of Ni (2.06 wt. %) content are reported in unmineralized granitoid. Chalcopyrite occurs as fine-grained crystals in inclusions within pyrite; and cobaltite occurs as rare fine-grained anhedral crystals occasionally disseminated in the albitite sill matrix. The chalcopyrite composition does not vary considerably in all sample and textural types, and cobaltite shows minor concentrations of Ni (4.55 wt. %) and Fe (3.45 wt. %). Native gold grains are commonly found associated with the secondary pyrite texture especially within the sulphide-rich lenses and in the massive sulphide veins, and are almost pure with ~97 wt. %. A Na-rich hydrothermal fluid from low-grade metamorphism associated with the E-W compressive tectonic event, which caused formation of the antiform structure which control the mineralization in the deposit area, led to the albitization of the deposit rocks and specially the alteration of the granitic assemblage to form albitite, and the deposition of aggregates of fine-grained anhedral crystals and growth and annealing of pyrite in sulphide-rich lenses. Afterward, the CO2-rich hydrothermal fluids influx circulated through reactivated structures, including quartz veins, and led to the precipitation of dolomite, ankerite, siderite and magnesite. They also led to the precipitation of pyrite of secondary textures as well as arsenopyrite, chalcopyrite and formation of pyrrhotite from the desulphurization of early pyrite. The CO2-rich hydrothermal fluids probably leached gold and other trace elements such as As, Co, etc. from the sedimentary host rocks and deposited them into suitable traps, such as the sulphide-rich lenses and massive sulphide bodies, preferably within the hinge zone of anticline axis constituting a hydrothermal fluid pathway.
- Full Text:
- Date Issued: 2019
Syntheses and photophysico-chemical properties of phthalocyanines in the presence of silica nanoparticles
- Authors: Peteni, Siwaphiwe
- Date: 2019
- Subjects: Phthalocyanines , Silica , Nanoparticles , Bioconjugates
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67592 , vital:29118
- Description: This thesis reports on the syntheses and characterizationof symmetrical (charged and neutral), asymmetrical (neutral) metallophthalocyanines (MPcs) and subphthalocyanines (SubPcs). The charged and neutral Pcs were physically doped onto silica nanoparticles (SiNPs). The asymmetrical MPc was also chemically linked to SiNPs. Spectroscopic and microscopic techniques were used to confirm the formation of SiNPs-MPc conjugates. The photophysics and photochemistry of the MPcs were assessed when alone and in conjugates (with SiNPs). The studies showed no significant changes in fluorescence quantum yields (ϕF) and fluorescence lifetimes (ϕF) of MPcs following doping except for 2-SiNPs (2 = Zn tetraaminophenoxyphthalocyanines) and 6-SiNPs (doped) (6 = Zn tris[(4-(pyridine-4-ylthio)2-thio-4-methylthiazol-5yl) acetic acid phthalocyanine) where there was a decrease in the ϕF value. Also for 1-SiNPs (1 = unsubstituted ZnPc) there was an elongation in τF which could be due to the protection offered by SiNPs. Both charged/neutral MPcs displayed high triplet quantum yields (ϕT) and singlet quantum yields (ϕΔ) following doping except for 2-SiNPs where there was a decrease in the latter. For 1-SiNPs there was an increase in ϕT but a decrease inϕΔ .There wasa decrease in ϕT and an increase in ϕΔfor4-SiNPs (4 = Zn tetrasulfophenoxyphthalocyanine), the decrease in ϕT could be due to the orientation of theMPc in SiNPs. An increase in both ϕT and ϕΔ for 6-SiNPs (linked) compared to 6-SiNPs (doped) was observed. Complex 5 (5 = Zn tetra-kis-(dodecylmercapto) phthalocyanine) showed a low ϕΔ value.
- Full Text:
- Date Issued: 2019
- Authors: Peteni, Siwaphiwe
- Date: 2019
- Subjects: Phthalocyanines , Silica , Nanoparticles , Bioconjugates
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67592 , vital:29118
- Description: This thesis reports on the syntheses and characterizationof symmetrical (charged and neutral), asymmetrical (neutral) metallophthalocyanines (MPcs) and subphthalocyanines (SubPcs). The charged and neutral Pcs were physically doped onto silica nanoparticles (SiNPs). The asymmetrical MPc was also chemically linked to SiNPs. Spectroscopic and microscopic techniques were used to confirm the formation of SiNPs-MPc conjugates. The photophysics and photochemistry of the MPcs were assessed when alone and in conjugates (with SiNPs). The studies showed no significant changes in fluorescence quantum yields (ϕF) and fluorescence lifetimes (ϕF) of MPcs following doping except for 2-SiNPs (2 = Zn tetraaminophenoxyphthalocyanines) and 6-SiNPs (doped) (6 = Zn tris[(4-(pyridine-4-ylthio)2-thio-4-methylthiazol-5yl) acetic acid phthalocyanine) where there was a decrease in the ϕF value. Also for 1-SiNPs (1 = unsubstituted ZnPc) there was an elongation in τF which could be due to the protection offered by SiNPs. Both charged/neutral MPcs displayed high triplet quantum yields (ϕT) and singlet quantum yields (ϕΔ) following doping except for 2-SiNPs where there was a decrease in the latter. For 1-SiNPs there was an increase in ϕT but a decrease inϕΔ .There wasa decrease in ϕT and an increase in ϕΔfor4-SiNPs (4 = Zn tetrasulfophenoxyphthalocyanine), the decrease in ϕT could be due to the orientation of theMPc in SiNPs. An increase in both ϕT and ϕΔ for 6-SiNPs (linked) compared to 6-SiNPs (doped) was observed. Complex 5 (5 = Zn tetra-kis-(dodecylmercapto) phthalocyanine) showed a low ϕΔ value.
- Full Text:
- Date Issued: 2019
Synthesis of indium phthalocyanines for photodynamic antimicrobial chemotherapy and photo-oxidation of pollutants
- Authors: Sindelo, Azole
- Date: 2019
- Subjects: Phthalocyanines , Azo dyes , Indium compounds , Photochemotherapy , Nanoparticles , Photodegradation , Pollutants , Water -- Purification
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67581 , vital:29116
- Description: Indium (III) octacarboxyl phthalocyanine (ClInOCPc) alone and when conjugated to magnetic nanoparticles (MNP-ClInOCPc), 2(3),9(10),16(17),23(24)-octapyridylsulfanyl phthalocyaninato chloroindium (III) (ClInOPyPc) and its quaternized derivative 2(3),9(10),16(17),23(24)-octamethylpyridylsulfanyl phthalocyaninato chloroindium (III) (ClInOMePyPc) were synthesized. All Pcs were tested for both photodynamic antimicrobial chemotherapy (PACT) of an unknown water sample and photo-degradation of methyl red (MR). The singlet quantum yield (ΦΔ) for the ClInOCPc and MNP-ClInOCPc in PAN polymer fibers were 0.36 and 0.20 respectively using ADMA as a quencher in water. The photo-inactivation of bacteria in a water sample with unknown microbes was tested, with the MNP-ClInOCPc inactivating 90.6 % of the microbes and the ClInOCPc with 84.8 %. When embedded to the polymer, there was 48% bacterial clearance for ClInOCPc and 64% clearance for the MNP-ClInOCPc. The rate of degradation of MR increased with decrease of the MR concentration, with the MNP-ClInOCPc having the fastest rate. For ClInOPyPc and ClInOMePyPc, the singlet quantum yields were 0.46 and 0.33 in dimethylformamide (DMF), respectively. The PACT activity of ClInOMePyPc (containing 8 positive charges) was compared to those of 9(10),16(17),23(24)-tri-N-methyl-4-pyridylsulfanyl-2(3)-(4-aminophenoxy) phthalocyaninato chloro indium (III) triiodide (1) (containing 3 positive charges) and 2-[4-(N-methylpyridyloxy) phthalocyaninato] chloroindium (III) iodide (2) (containing 4 positive charges). When comparing ClInOMePyPc, 1 and 2, the largest log reduction for E. coli were obtained for complex 2 containing four positive charges hence showing it is not always the charge that determines the PACT activity, but the bridging atom in the phthalocyanine plays a role.
- Full Text:
- Date Issued: 2019
- Authors: Sindelo, Azole
- Date: 2019
- Subjects: Phthalocyanines , Azo dyes , Indium compounds , Photochemotherapy , Nanoparticles , Photodegradation , Pollutants , Water -- Purification
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/67581 , vital:29116
- Description: Indium (III) octacarboxyl phthalocyanine (ClInOCPc) alone and when conjugated to magnetic nanoparticles (MNP-ClInOCPc), 2(3),9(10),16(17),23(24)-octapyridylsulfanyl phthalocyaninato chloroindium (III) (ClInOPyPc) and its quaternized derivative 2(3),9(10),16(17),23(24)-octamethylpyridylsulfanyl phthalocyaninato chloroindium (III) (ClInOMePyPc) were synthesized. All Pcs were tested for both photodynamic antimicrobial chemotherapy (PACT) of an unknown water sample and photo-degradation of methyl red (MR). The singlet quantum yield (ΦΔ) for the ClInOCPc and MNP-ClInOCPc in PAN polymer fibers were 0.36 and 0.20 respectively using ADMA as a quencher in water. The photo-inactivation of bacteria in a water sample with unknown microbes was tested, with the MNP-ClInOCPc inactivating 90.6 % of the microbes and the ClInOCPc with 84.8 %. When embedded to the polymer, there was 48% bacterial clearance for ClInOCPc and 64% clearance for the MNP-ClInOCPc. The rate of degradation of MR increased with decrease of the MR concentration, with the MNP-ClInOCPc having the fastest rate. For ClInOPyPc and ClInOMePyPc, the singlet quantum yields were 0.46 and 0.33 in dimethylformamide (DMF), respectively. The PACT activity of ClInOMePyPc (containing 8 positive charges) was compared to those of 9(10),16(17),23(24)-tri-N-methyl-4-pyridylsulfanyl-2(3)-(4-aminophenoxy) phthalocyaninato chloro indium (III) triiodide (1) (containing 3 positive charges) and 2-[4-(N-methylpyridyloxy) phthalocyaninato] chloroindium (III) iodide (2) (containing 4 positive charges). When comparing ClInOMePyPc, 1 and 2, the largest log reduction for E. coli were obtained for complex 2 containing four positive charges hence showing it is not always the charge that determines the PACT activity, but the bridging atom in the phthalocyanine plays a role.
- Full Text:
- Date Issued: 2019
Synthesis, characterisation and spectroscopic studies of diazine-N-oxide complexes of iron(II) towards the development of sensors
- Authors: Mpiti, Unako Bongani
- Date: 2019
- Subjects: Diazines , Ligands , Iron
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/94753 , vital:31075
- Description: The characteristic magnetic and spectroscopic features associated with the red monomeric or dimeric, and polymeric pyrazine-N-oxide (PyzNO) iron(II) perchlorate complexes; Fen(μ1,1-pyzNO)2n-2(pyzNO)3n+2(ClO4)2n (n = {1, 2}*, and the novel compound {Fe(μ-pyzNO-κN,κO)n-1(pyzNO-κN)2(pyzNO-κO)2}n(ClO4)2n†, respectively, were investigated. These properties are altered substantially when the complexes are hydrated; for instance, by atmospheric exposure. The resulting species; Fe(pyzNO)5(H2O)3(ClO4)2* and [Fe(pyzNO-κN)4(H2O)2](ClO4)2.2H2O†, which have different hues of a bright yellow colour, were found to exhibit strong paramagnetism, in contrast to their anhydrous precursors, which are ‘EPR silent’. A low spin → high spin crossover (LS→HS, SCO) transition was therefore proposed to occur as the complexes become hydrated by atmospheric moisture. The red→yellow colour change is reversible, and dehydration of the yellow species by heating regenerates the red variant, a feature which lends itself to the potential applicability of the system as a sensor. Further emphasis on this potential derives from the fact that the hydration/dehydration process, and its accompanying physical changes, appears reversible even after many such treatments. It became of interest, then, to determine if these changes were limited to water-exposed samples, or if they occurred under more diverse solvent atmospheres. The reversibility of such exposure on the structure of the novel polynuclear complex was therefore investigated. In general, it was found that there occurred a strong solvent-complex association for the more polar solvents. Red→yellow, LS→HS events were seen when the complex was exposed to the vapours of p-dioxane, acetaldehyde and formaldehyde, and to a lesser extent, to that of methanol. In each case, significant structural changes were seen, as evidenced be comparative XRPD and thermo-analytical studies. Some of these changes have however been ascribed to the effects of partial dissolution upon extended exposure of the complex to the associated media. Exposure to less polar solvent atmospheres, such as those of cyclohexane, toluene, diethyl ether, etc., showed some signs of mild solvent surface adhesion, but were unaccompanied by discernible magnetic and colour changes. Another novel complex was produced during attempts to synthesize the PyzNO complexes from a mixture of a 2,2’-dimethoxypropane (DMP) and ethanol (1:1, v/v), rather than the methanol/DMP mixture which had been alternately used. The formula of the resulting complex is Fe(pyzNO)6(ClO4)2.3EtOH*. This EPR inactive product was orange in colour, and transformed into a bright yellow, strongly paramagnetic species upon atmospheric exposure. Further solvent studies showed that this species interacted significantly with all solvents tested, but generally more strongly with increasing solvent polarity. Orange→yellow colour changes occurred in environments saturated with p-dioxane, acetaldehyde and formaldehyde vapours. The DMSO-exposed sample transformed to dark red, due to suspected PyzNO substitution by the solvent. The red→yellow and orange→yellow colour changes were ascribed to the formal substitution of O-coordinated PyzNO (μ-PyzNO in the polymeric complex) by the incoming solvent. The resulting structural and geometric changes stimulated a redistribution of d electrons among the new constituent molecular orbitals of altered energy and symmetry. Therefore, although the colour changes were not conventionally solvatochromic - in that the original structure was lost on exposure – data suggested that it was the coordination of species of higher donor strength that produced the observed bathochromic shifts. A novel 4,4’-bipyridine-N-oxide Fe(II) perchlorate complex, Fe2(bipyNO)5(ClO4)4.6MeOH†, was also produced, primarily for physicochemical comparison with the PyzNO complexes. No colour or magnetic changes were seen on atmospheric exposure. The original complex was observed to be inherently paramagnetic, and no SCO events occurred upon solvent exposure. Despite this, thermal analyses showed that the complex did exhibit the strong uptake of polar solvents in general, but particularly with acetaldehyde. Significant structural changes upon exposure were limited to surface phenomena, with the exception of the acetaldehyde-exposed sample.
- Full Text:
- Date Issued: 2019
- Authors: Mpiti, Unako Bongani
- Date: 2019
- Subjects: Diazines , Ligands , Iron
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/94753 , vital:31075
- Description: The characteristic magnetic and spectroscopic features associated with the red monomeric or dimeric, and polymeric pyrazine-N-oxide (PyzNO) iron(II) perchlorate complexes; Fen(μ1,1-pyzNO)2n-2(pyzNO)3n+2(ClO4)2n (n = {1, 2}*, and the novel compound {Fe(μ-pyzNO-κN,κO)n-1(pyzNO-κN)2(pyzNO-κO)2}n(ClO4)2n†, respectively, were investigated. These properties are altered substantially when the complexes are hydrated; for instance, by atmospheric exposure. The resulting species; Fe(pyzNO)5(H2O)3(ClO4)2* and [Fe(pyzNO-κN)4(H2O)2](ClO4)2.2H2O†, which have different hues of a bright yellow colour, were found to exhibit strong paramagnetism, in contrast to their anhydrous precursors, which are ‘EPR silent’. A low spin → high spin crossover (LS→HS, SCO) transition was therefore proposed to occur as the complexes become hydrated by atmospheric moisture. The red→yellow colour change is reversible, and dehydration of the yellow species by heating regenerates the red variant, a feature which lends itself to the potential applicability of the system as a sensor. Further emphasis on this potential derives from the fact that the hydration/dehydration process, and its accompanying physical changes, appears reversible even after many such treatments. It became of interest, then, to determine if these changes were limited to water-exposed samples, or if they occurred under more diverse solvent atmospheres. The reversibility of such exposure on the structure of the novel polynuclear complex was therefore investigated. In general, it was found that there occurred a strong solvent-complex association for the more polar solvents. Red→yellow, LS→HS events were seen when the complex was exposed to the vapours of p-dioxane, acetaldehyde and formaldehyde, and to a lesser extent, to that of methanol. In each case, significant structural changes were seen, as evidenced be comparative XRPD and thermo-analytical studies. Some of these changes have however been ascribed to the effects of partial dissolution upon extended exposure of the complex to the associated media. Exposure to less polar solvent atmospheres, such as those of cyclohexane, toluene, diethyl ether, etc., showed some signs of mild solvent surface adhesion, but were unaccompanied by discernible magnetic and colour changes. Another novel complex was produced during attempts to synthesize the PyzNO complexes from a mixture of a 2,2’-dimethoxypropane (DMP) and ethanol (1:1, v/v), rather than the methanol/DMP mixture which had been alternately used. The formula of the resulting complex is Fe(pyzNO)6(ClO4)2.3EtOH*. This EPR inactive product was orange in colour, and transformed into a bright yellow, strongly paramagnetic species upon atmospheric exposure. Further solvent studies showed that this species interacted significantly with all solvents tested, but generally more strongly with increasing solvent polarity. Orange→yellow colour changes occurred in environments saturated with p-dioxane, acetaldehyde and formaldehyde vapours. The DMSO-exposed sample transformed to dark red, due to suspected PyzNO substitution by the solvent. The red→yellow and orange→yellow colour changes were ascribed to the formal substitution of O-coordinated PyzNO (μ-PyzNO in the polymeric complex) by the incoming solvent. The resulting structural and geometric changes stimulated a redistribution of d electrons among the new constituent molecular orbitals of altered energy and symmetry. Therefore, although the colour changes were not conventionally solvatochromic - in that the original structure was lost on exposure – data suggested that it was the coordination of species of higher donor strength that produced the observed bathochromic shifts. A novel 4,4’-bipyridine-N-oxide Fe(II) perchlorate complex, Fe2(bipyNO)5(ClO4)4.6MeOH†, was also produced, primarily for physicochemical comparison with the PyzNO complexes. No colour or magnetic changes were seen on atmospheric exposure. The original complex was observed to be inherently paramagnetic, and no SCO events occurred upon solvent exposure. Despite this, thermal analyses showed that the complex did exhibit the strong uptake of polar solvents in general, but particularly with acetaldehyde. Significant structural changes upon exposure were limited to surface phenomena, with the exception of the acetaldehyde-exposed sample.
- Full Text:
- Date Issued: 2019
Targeted attack detection by means of free and open source solutions
- Authors: Bernardo, Louis F
- Date: 2019
- Subjects: Computer networks -- Security measures , Information technology -- Security measures , Computer security -- Management , Data protection
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/92269 , vital:30703
- Description: Compliance requirements are part of everyday business requirements for various areas, such as retail and medical services. As part of compliance it may be required to have infrastructure in place to monitor the activities in the environment to ensure that the relevant data and environment is sufficiently protected. At the core of such monitoring solutions one would find some type of data repository, or database, to store and ultimately correlate the captured events. Such solutions are commonly called Security Information and Event Management, or SIEM for short. Larger companies have been known to use commercial solutions such as IBM's Qradar, Logrythm, or Splunk. However, these come at significant cost and arent suitable for smaller businesses with limited budgets. These solutions require manual configuration of event correlation for detection of activities that place the environment in danger. This usually requires vendor implementation assistance that also would come at a cost. Alternatively, there are open source solutions that provide the required functionality. This research will demonstrate building an open source solution, with minimal to no cost for hardware or software, while still maintaining the capability of detecting targeted attacks. The solution presented in this research includes Wazuh, which is a combination of OSSEC and the ELK stack, integrated with an Network Intrusion Detection System (NIDS). The success of the integration, is determined by measuring postive attack detection based on each different configuration options. To perform the testing, a deliberately vulnerable platform named Metasploitable will be used as a victim host. The victim host vulnerabilities were created specifically to serve as target for Metasploit. The attacks were generated by utilising Metasploit Framework on a prebuilt Kali Linux host.
- Full Text:
- Date Issued: 2019
- Authors: Bernardo, Louis F
- Date: 2019
- Subjects: Computer networks -- Security measures , Information technology -- Security measures , Computer security -- Management , Data protection
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/92269 , vital:30703
- Description: Compliance requirements are part of everyday business requirements for various areas, such as retail and medical services. As part of compliance it may be required to have infrastructure in place to monitor the activities in the environment to ensure that the relevant data and environment is sufficiently protected. At the core of such monitoring solutions one would find some type of data repository, or database, to store and ultimately correlate the captured events. Such solutions are commonly called Security Information and Event Management, or SIEM for short. Larger companies have been known to use commercial solutions such as IBM's Qradar, Logrythm, or Splunk. However, these come at significant cost and arent suitable for smaller businesses with limited budgets. These solutions require manual configuration of event correlation for detection of activities that place the environment in danger. This usually requires vendor implementation assistance that also would come at a cost. Alternatively, there are open source solutions that provide the required functionality. This research will demonstrate building an open source solution, with minimal to no cost for hardware or software, while still maintaining the capability of detecting targeted attacks. The solution presented in this research includes Wazuh, which is a combination of OSSEC and the ELK stack, integrated with an Network Intrusion Detection System (NIDS). The success of the integration, is determined by measuring postive attack detection based on each different configuration options. To perform the testing, a deliberately vulnerable platform named Metasploitable will be used as a victim host. The victim host vulnerabilities were created specifically to serve as target for Metasploit. The attacks were generated by utilising Metasploit Framework on a prebuilt Kali Linux host.
- Full Text:
- Date Issued: 2019
Targeting allosteric sites of Escherichia coli heat shock protein 70 for antibiotic development
- Authors: Okeke, Chiamaka Jessica
- Date: 2019
- Subjects: Heat shock proteins , Escherichia coli , Allosteric proteins , Antibiotics , Molecular chaperones , Ligands (Biochemistry) , Molecular dynamics , Principal components analysis , South African Natural Compounds Database
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/115998 , vital:34287
- Description: Hsp70s are members of the heat shock proteins family with a molecular weight of 70-kDa and are the most abundant group in bacterial and eukaryotic systems, hence the most extensively studied ones. These proteins are molecular chaperones that play a significant role in protein homeostasis by facilitating appropriate folding of proteins, preventing proteins from aggregating and misfolding. They are also involved in translocation of proteins into subcellular compartments and protection of cells against stress. Stress caused by environmental or biological factors affects the functionality of the cell. In response to these stressful conditions, up-regulation of Hsp70s ensures that the cells are protected by balancing out unfolded proteins giving them ample time to repair denatured proteins. Hsp70s is connected to numerous illnesses such as autoimmune and neurodegenerative diseases, bacterial infection, cancer, malaria, and obesity. The multi-functional nature of Hsp70s predisposes them as promising therapeutic targets. Hsp70s play vital roles in various cell developments, and survival pathways, therefore targeting this protein will provide a new avenue towards the discovery of active therapeutic agents for the treatment of a wide range of diseases. Allosteric sites of these proteins in its multi-conformational states have not been explored for inhibitory properties hence the aim of this study. This study aims at identifying allosteric sites that inhibit the ATPase and substrate binding activities using computational approaches. Using E. coli as a model organism, molecular docking for high throughput virtual screening was carried out using 623 compounds from the South African Natural Compounds Database (SANCDB; https://sancdb.rubi.ru.ac.za/) against identified allosteric sites. Ligands with the highest binding affinity (good binders) interacting with critical allosteric residues that are druggable were identified. Molecular dynamics (MD) simulation was also performed on the identified hits to assess for protein-inhibitor complex stability. Finally, principal component analysis (PCA) was performed to understand the structural dynamics of the ligand-free and ligand-bound structures during MD simulation.
- Full Text:
- Date Issued: 2019
- Authors: Okeke, Chiamaka Jessica
- Date: 2019
- Subjects: Heat shock proteins , Escherichia coli , Allosteric proteins , Antibiotics , Molecular chaperones , Ligands (Biochemistry) , Molecular dynamics , Principal components analysis , South African Natural Compounds Database
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/115998 , vital:34287
- Description: Hsp70s are members of the heat shock proteins family with a molecular weight of 70-kDa and are the most abundant group in bacterial and eukaryotic systems, hence the most extensively studied ones. These proteins are molecular chaperones that play a significant role in protein homeostasis by facilitating appropriate folding of proteins, preventing proteins from aggregating and misfolding. They are also involved in translocation of proteins into subcellular compartments and protection of cells against stress. Stress caused by environmental or biological factors affects the functionality of the cell. In response to these stressful conditions, up-regulation of Hsp70s ensures that the cells are protected by balancing out unfolded proteins giving them ample time to repair denatured proteins. Hsp70s is connected to numerous illnesses such as autoimmune and neurodegenerative diseases, bacterial infection, cancer, malaria, and obesity. The multi-functional nature of Hsp70s predisposes them as promising therapeutic targets. Hsp70s play vital roles in various cell developments, and survival pathways, therefore targeting this protein will provide a new avenue towards the discovery of active therapeutic agents for the treatment of a wide range of diseases. Allosteric sites of these proteins in its multi-conformational states have not been explored for inhibitory properties hence the aim of this study. This study aims at identifying allosteric sites that inhibit the ATPase and substrate binding activities using computational approaches. Using E. coli as a model organism, molecular docking for high throughput virtual screening was carried out using 623 compounds from the South African Natural Compounds Database (SANCDB; https://sancdb.rubi.ru.ac.za/) against identified allosteric sites. Ligands with the highest binding affinity (good binders) interacting with critical allosteric residues that are druggable were identified. Molecular dynamics (MD) simulation was also performed on the identified hits to assess for protein-inhibitor complex stability. Finally, principal component analysis (PCA) was performed to understand the structural dynamics of the ligand-free and ligand-bound structures during MD simulation.
- Full Text:
- Date Issued: 2019
Taxonomic and trait-based responses of the orders Ephemeroptera, Plecoptera, Odonata, And Trichoptera (EPOT) to sediment stress in the Tsitsa River and its tributaries, Eastern Cape, South Africa
- Akamagwuna, Frank Chukwuzuoke
- Authors: Akamagwuna, Frank Chukwuzuoke
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68082 , vital:29196
- Description: Increased urbanization and industrialisation due to human population growth and associated high demand for food have led to widespread disturbances of freshwater ecosystems and associated resources. A widely recognised consequence of these disturbances is the excessive delivery of sediments into the freshwater ecosystems, which severely affects the functioning and integrity of these systems.. The major water quality impairment in the Tsitsa River and its tributaries, situated in the Mzimvubu catchment in the Eastern Cape Province of South Africa, is known to be excessive sediment input. In this study, the application of macroinvertebrates taxonomic-based and trait-based approaches was used to assess the responses and vulnerability of Ephemeroptera, Plecoptera, Odonata and Trichoptera (EPOT) species to settled and suspended sediments stress in eight selected sampling sites in the Tsitsa River and its tributaries. The eight selected sites were Site 1 (Tsitsa upstream), Site 2 (Tsitsa downstream), Site 3 (Qurana tributary), Site 4 (Pot River upstream), Site 5 (Pot River downstream), Site 6 (Little Pot River), Site 7 (Millstream upstream) and Site 8 (Millstream downstream). The methods used in this study involved the analysis of water physico-chemical variables as well as sediment characteristics, derivation of five EPOT metrics, EPOT species-level taxonomic analysis, individual EPOT trait analysis and the development of a novel trait-based approach using a combination of traits. The sampling of EPOT taxa was done using the SASS5 protocols. Identification of EPOT was done to genus/species level and all data were subjected to relevant statistical analysis. The results of ecological categories derived for the physico-chemical variables generally indicated the ecological categories A and B, which was indicative of good water quality conditions. The result of sediment particle analysis revealed four distinct site groups: site group 1 (Tsitsa River upstream and Qurana tributary), site group 2 (Tsitsa River downstream and Millstream upstream), site group 3 (Pot River, both upstream and downstream, and Millstream downstream) and site group 4 (Little Pot River). The species-level taxonomic analysis of EPOT revealed that site group 1 was the most sediment-influenced sites whereas site group 4 was the least sediment-influenced. Species such as Paragopmhus sp., Aeshna sp. and Baetis sp. were considered sediment-tolerant with strong positive association with site group 1. The novel trait-based approach developed in this study proved useful in predicting the responses of EPOT species to sediment stress, and further discriminated between the study sites. The approach was used to group EPOT species into four vulnerability classes. The result showed that filter feeding EPOT species that have filamentous gills, preferring stone biotopes and feeding on detritus (FPOM) were mostly classified as highly vulnerable to sediment stress and indicated no significant association with the highly sediment-influenced site group 1. The TBA largely corresponded well to the predictions made with the relative abundance of the vulnerable class decreasing in the sediment-influenced sites compared to the tolerant and highly tolerant classes. Overall, the study revealed the importance of the complementary use of taxonomic and trait-based approaches to biomonitoring.
- Full Text:
- Date Issued: 2019
- Authors: Akamagwuna, Frank Chukwuzuoke
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68082 , vital:29196
- Description: Increased urbanization and industrialisation due to human population growth and associated high demand for food have led to widespread disturbances of freshwater ecosystems and associated resources. A widely recognised consequence of these disturbances is the excessive delivery of sediments into the freshwater ecosystems, which severely affects the functioning and integrity of these systems.. The major water quality impairment in the Tsitsa River and its tributaries, situated in the Mzimvubu catchment in the Eastern Cape Province of South Africa, is known to be excessive sediment input. In this study, the application of macroinvertebrates taxonomic-based and trait-based approaches was used to assess the responses and vulnerability of Ephemeroptera, Plecoptera, Odonata and Trichoptera (EPOT) species to settled and suspended sediments stress in eight selected sampling sites in the Tsitsa River and its tributaries. The eight selected sites were Site 1 (Tsitsa upstream), Site 2 (Tsitsa downstream), Site 3 (Qurana tributary), Site 4 (Pot River upstream), Site 5 (Pot River downstream), Site 6 (Little Pot River), Site 7 (Millstream upstream) and Site 8 (Millstream downstream). The methods used in this study involved the analysis of water physico-chemical variables as well as sediment characteristics, derivation of five EPOT metrics, EPOT species-level taxonomic analysis, individual EPOT trait analysis and the development of a novel trait-based approach using a combination of traits. The sampling of EPOT taxa was done using the SASS5 protocols. Identification of EPOT was done to genus/species level and all data were subjected to relevant statistical analysis. The results of ecological categories derived for the physico-chemical variables generally indicated the ecological categories A and B, which was indicative of good water quality conditions. The result of sediment particle analysis revealed four distinct site groups: site group 1 (Tsitsa River upstream and Qurana tributary), site group 2 (Tsitsa River downstream and Millstream upstream), site group 3 (Pot River, both upstream and downstream, and Millstream downstream) and site group 4 (Little Pot River). The species-level taxonomic analysis of EPOT revealed that site group 1 was the most sediment-influenced sites whereas site group 4 was the least sediment-influenced. Species such as Paragopmhus sp., Aeshna sp. and Baetis sp. were considered sediment-tolerant with strong positive association with site group 1. The novel trait-based approach developed in this study proved useful in predicting the responses of EPOT species to sediment stress, and further discriminated between the study sites. The approach was used to group EPOT species into four vulnerability classes. The result showed that filter feeding EPOT species that have filamentous gills, preferring stone biotopes and feeding on detritus (FPOM) were mostly classified as highly vulnerable to sediment stress and indicated no significant association with the highly sediment-influenced site group 1. The TBA largely corresponded well to the predictions made with the relative abundance of the vulnerable class decreasing in the sediment-influenced sites compared to the tolerant and highly tolerant classes. Overall, the study revealed the importance of the complementary use of taxonomic and trait-based approaches to biomonitoring.
- Full Text:
- Date Issued: 2019
Teachers’ engagement with learners in inclusive foundation phase classrooms: a case study analysis
- Authors: Skae, Vera Astrid
- Date: 2019
- Subjects: Early childhood education -- South Africa -- Eastern Cape -- Case studies , Education and state -- South Africa
- Language: English
- Type: text , Thesis , Masters , MEd
- Identifier: http://hdl.handle.net/10962/92705 , vital:30722
- Description: Since 2001, South African teachers have been attempting to practise inclusive education in classrooms in ordinary, public schools. Previous research has shown the many challenges South African teachers face in our current educational environment. Strong arguments, however, have been made for more research to be done on actual teacher engagement with learners in our ordinary, public school classrooms, and the extent to which classroom practices are inclusive (Engelbrecht, Nel, Nel & Tlale, 2015, p. 3). This study sought to do an in-depth critical analysis of three foundation phase teachers and their engagement with learners in their classrooms at an Eastern Cape school. The aim was to examine how inclusive education was being enacted by the teacher with learners in real classroom settings, with particular attention paid to ways in which learners experience barriers to learning. A micro-level analysis was conducted in a single unit case study and using a qualitative research approach in an interpretive paradigm. Questionnaires, observations, and semi-structured interviews were conducted in an attempt to gather in-depth data. It was heartening to observe the extent to which inclusive education and practices were being enacted at the school and in the classrooms, and instructive in providing examples of what can work in the South African context. Key findings of this study include the generation of a framework for analysing inclusive classroom practice at the micro level. Criteria were identified as indicators of inclusive education of learners including those experiencing barriers to learning in the classroom. This study builds on and extends what has been developed at the macro and micro level of inclusive education in schools and in the classroom. It found that a number of challenges remain for enabling the implementation of an inclusive education. At the macro level, these include the provision of clear directives for implementation of inclusive education by the appropriate authorities; the provision of well-structured professional teacher training and development programmes in inclusive classroom practices, as well as in barriers to learning and how to address them; and the provision of funding for school and classroom infrastructure and resources. At the micro level, these include the successful implementation by teachers of inclusive classroom practices and the provision of the necessary support for learners experiencing barriers to learning in their classrooms, including expert personnel, resources, and assistive devices.
- Full Text:
- Date Issued: 2019
- Authors: Skae, Vera Astrid
- Date: 2019
- Subjects: Early childhood education -- South Africa -- Eastern Cape -- Case studies , Education and state -- South Africa
- Language: English
- Type: text , Thesis , Masters , MEd
- Identifier: http://hdl.handle.net/10962/92705 , vital:30722
- Description: Since 2001, South African teachers have been attempting to practise inclusive education in classrooms in ordinary, public schools. Previous research has shown the many challenges South African teachers face in our current educational environment. Strong arguments, however, have been made for more research to be done on actual teacher engagement with learners in our ordinary, public school classrooms, and the extent to which classroom practices are inclusive (Engelbrecht, Nel, Nel & Tlale, 2015, p. 3). This study sought to do an in-depth critical analysis of three foundation phase teachers and their engagement with learners in their classrooms at an Eastern Cape school. The aim was to examine how inclusive education was being enacted by the teacher with learners in real classroom settings, with particular attention paid to ways in which learners experience barriers to learning. A micro-level analysis was conducted in a single unit case study and using a qualitative research approach in an interpretive paradigm. Questionnaires, observations, and semi-structured interviews were conducted in an attempt to gather in-depth data. It was heartening to observe the extent to which inclusive education and practices were being enacted at the school and in the classrooms, and instructive in providing examples of what can work in the South African context. Key findings of this study include the generation of a framework for analysing inclusive classroom practice at the micro level. Criteria were identified as indicators of inclusive education of learners including those experiencing barriers to learning in the classroom. This study builds on and extends what has been developed at the macro and micro level of inclusive education in schools and in the classroom. It found that a number of challenges remain for enabling the implementation of an inclusive education. At the macro level, these include the provision of clear directives for implementation of inclusive education by the appropriate authorities; the provision of well-structured professional teacher training and development programmes in inclusive classroom practices, as well as in barriers to learning and how to address them; and the provision of funding for school and classroom infrastructure and resources. At the micro level, these include the successful implementation by teachers of inclusive classroom practices and the provision of the necessary support for learners experiencing barriers to learning in their classrooms, including expert personnel, resources, and assistive devices.
- Full Text:
- Date Issued: 2019
Template ecological analsyis of the narratives of partner’s and family member’s of women who consumed alcohol in pregnancy
- Authors: Tsetse, Agrinette Nontozamo
- Date: 2019
- Subjects: Pregnant women -- Alcohol use -- Social aspects , Substance abuse in pregnancy , Fetus -- Effect of drugs on , Pregnancy -- Psychological aspects , Pregnant women -- Substance use , Substance abuse -- Social aspects , Ecological Systems Theory
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/114905 , vital:34055
- Description: Although there is increasing research on alcohol in South Africa, most of this work has an epidemiological focus. Very little research has explored alcohol use during pregnancy specifically from the perspective of the woman’s partner or family member or focused on contextual risk factors beyond the pregnant woman. This information is important to ensure that interventions are formulated based on the social contexts within which drinking in pregnancy takes place and in guiding interventions that aim to prevent prenatal alcohol use, thereby preventing the occurrence of FASDs. This study was guided by Bronfenbrenner’s Ecological Systems Theory to understand partners’ and family members’ perspectives of prenatal exposure within the actual environments in which alcohol use takes place. According to this theory, an individual exists within layers of social relationships: the family, intimate partners, friendships, and healthcare workers (microsystems), interactions among these microsystems, for example, interaction between healthcare workers and intimate partner and family and social workers (mesosystem), accessibility of alcohol in the neighbourhoods (exosystems), religion, culture and society (macro-systems) and changes of the individual and socio-historical context (chronosystem). The data were collected using a biographic narrative interpretive method of interviewing. Thirteen narratives interviews were conducted with partners and family members in a disadvantaged community in Buffalo City, Eastern Cape Province. The interviews were analysed using Template Analysis within the Ecological Systems Theory to interrogate the stories of partners and family members. According to participants, some of the reasons women consumed alcohol in pregnancy are: drinking habits before pregnancy that were difficult to break in pregnancy; women drank during the first trimester of their pregnancy because of unplanned pregnancy; women continued drinking throughout their pregnancies to cope with the emotional upset caused by the trauma of rape and losing loved ones, stress, receiving HIV-diagnosis in pregnancy, intimate partner violence, infidelity, rejection and denial of pregnancy from partners. After birth, some women continued drinking. Consequently, their children were taken away from them by social workers and family members because the parents were unable to care for the child due to alcohol use. There was lack of compliance of shebeens with liquor regulations, heavy drinking, high rates of alcohol use in pregnancy, and easy accessibility of alcohol within this study community. Pregnant women used religious coping beliefs to cope with their circumstances such as changes in their health, relationships and finances. Drinking during pregnancy is a complex problem that stems from multiple social and structural issues and interventions should therefore not only focus on the individual, but also on social networks and communities.
- Full Text:
- Date Issued: 2019
- Authors: Tsetse, Agrinette Nontozamo
- Date: 2019
- Subjects: Pregnant women -- Alcohol use -- Social aspects , Substance abuse in pregnancy , Fetus -- Effect of drugs on , Pregnancy -- Psychological aspects , Pregnant women -- Substance use , Substance abuse -- Social aspects , Ecological Systems Theory
- Language: English
- Type: text , Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/114905 , vital:34055
- Description: Although there is increasing research on alcohol in South Africa, most of this work has an epidemiological focus. Very little research has explored alcohol use during pregnancy specifically from the perspective of the woman’s partner or family member or focused on contextual risk factors beyond the pregnant woman. This information is important to ensure that interventions are formulated based on the social contexts within which drinking in pregnancy takes place and in guiding interventions that aim to prevent prenatal alcohol use, thereby preventing the occurrence of FASDs. This study was guided by Bronfenbrenner’s Ecological Systems Theory to understand partners’ and family members’ perspectives of prenatal exposure within the actual environments in which alcohol use takes place. According to this theory, an individual exists within layers of social relationships: the family, intimate partners, friendships, and healthcare workers (microsystems), interactions among these microsystems, for example, interaction between healthcare workers and intimate partner and family and social workers (mesosystem), accessibility of alcohol in the neighbourhoods (exosystems), religion, culture and society (macro-systems) and changes of the individual and socio-historical context (chronosystem). The data were collected using a biographic narrative interpretive method of interviewing. Thirteen narratives interviews were conducted with partners and family members in a disadvantaged community in Buffalo City, Eastern Cape Province. The interviews were analysed using Template Analysis within the Ecological Systems Theory to interrogate the stories of partners and family members. According to participants, some of the reasons women consumed alcohol in pregnancy are: drinking habits before pregnancy that were difficult to break in pregnancy; women drank during the first trimester of their pregnancy because of unplanned pregnancy; women continued drinking throughout their pregnancies to cope with the emotional upset caused by the trauma of rape and losing loved ones, stress, receiving HIV-diagnosis in pregnancy, intimate partner violence, infidelity, rejection and denial of pregnancy from partners. After birth, some women continued drinking. Consequently, their children were taken away from them by social workers and family members because the parents were unable to care for the child due to alcohol use. There was lack of compliance of shebeens with liquor regulations, heavy drinking, high rates of alcohol use in pregnancy, and easy accessibility of alcohol within this study community. Pregnant women used religious coping beliefs to cope with their circumstances such as changes in their health, relationships and finances. Drinking during pregnancy is a complex problem that stems from multiple social and structural issues and interventions should therefore not only focus on the individual, but also on social networks and communities.
- Full Text:
- Date Issued: 2019
The development of a larval feeding regimen for dusky kob, Argyrosomus japonicus, with a specific focus on the effect of weaning period on larval development and survival
- Authors: Keet, Thomas
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/96897 , vital:31344
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
- Authors: Keet, Thomas
- Date: 2019
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/96897 , vital:31344
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
The development of a larval feeding regimen for dusky kob, Argyrosomus japonicus, with a specific focus on the effect of weaning period on larval development and survival
- Authors: Keet, Thomas
- Date: 2019
- Subjects: Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Larvae , Argyrosomus -- Larvae , Argyrosomus japonicus -- Larvae -- Nutrition , Argyrosomus -- Larvae -- Nutrition
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/146577 , vital:38538
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019
- Authors: Keet, Thomas
- Date: 2019
- Subjects: Argyrosomus japonicus , Argyrosomus , Argyrosomus japonicus -- Larvae , Argyrosomus -- Larvae , Argyrosomus japonicus -- Larvae -- Nutrition , Argyrosomus -- Larvae -- Nutrition
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/146577 , vital:38538
- Description: One of the biggest limiting factors in marine finfish aquaculture is the low survival rate of early-stage larvae. Most mortalities can be ascribed to the poor nutritional value of live feeds, sibling cannibalism, and various stressors that result in swim bladder hyperinflation and/or starvation during the larval stage. Research results vary on the best timing for the introduction of artificial feed for good survival and growth rate in dusky kob larvae. The main objective of this experiment was to improve survival and growth rate. The experiment focused on a new feeding regime that sought to wean larvae onto an artificial diet earlier than the current Argyrosomus japonicus standard (weaning commenced at 16 days after hatch (DAH) versus 20 days after hatch), based on findings and recommendations made by Musson & Kaiser (2014). Three trials were conducted, each with five replicates of the two treatments, namely the new feeding regime and the standard feeding regime in a fully randomised design. Samples from each tank were collected every two days for the duration of the trial. Morphometric measurements (standard length; body depth; eye diameter) obtained from these sample larvae were used to compare growth rates between treatments. The ratio of BD:SL was used to assess larval condition throughout each trial. Tank survival rates were calculated on the last day of each trial.The study indicated that in mean water temperatures ranging from 24.3 – 25.2 °C, dusky kob larvae can be weaned onto an artificial pellet diet from 16 - 21 DAH without any negative effects on growth, condition and survival. Results from the highest mean temperatures of Trial 2 show a better mean condition in the treatment group during the weaning period (p < 0.05). In Trial 3, with its lower mean water temperatures of 23.2 °C, larvae in both treatments showed stunted absolute growth rates of all biometrics when compared to results from the higher mean temperatures of Trials 1 and 2. During the first 6 days of Trial 3 larvae were in relatively poor condition, BD:SL ≤ 0.30. During this same period in Trials 1 and 2, mean BD:SL ≥ 0.31, suggesting that a BD:SL ratio of ≤ 0.30 in non-weaned dusky kob larvae is an indicator of a degree of starvation. A future study on the morphology and histology of the larval gastrointestinal tract, specifically the liver and intestines, and how this early weaning regime affects their ontogeny under differing temperature conditions this needed to investigate the validity of these initial data on dusky kob larvae condition.
- Full Text:
- Date Issued: 2019