Biogeographic patterns of endolithic cyanobacteria and their negative impacts on mussels along the South African coast
- Authors: Ndhlovu, Aldwin
- Date: 2020
- Subjects: Cyanobacteria -- South Africa , Cyanobacteria -- Geographical distribution , Prokaryotes -- South Africa , Mexilhao mussel -- South Africa , Mytilus galloprovincialis -- South Africa , Coastal biology -- South Africa , Coastal ecology -- South Africa , Mussels -- Geographical distribution , Mussels -- Predators of , Mussels -- Mortality -- South Africa , Mussels -- Ecology -- South Africa , Mussels -- Growth -- South Africa , Mussels -- Fertility -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/144656 , vital:38367
- Description: Endolithic cyanobacterial species occur in a wide range of environments including cold and hot deserts as well as marine systems where they attack biological material such as corals and the shells of molluscs including limpets, mussels and abalone. Endoliths live as parasites in mussel shells, where they erode and extract calcium carbonate leading to shell weakening, creating fracture holes that lead to shell collapse and death, but they also have positive effects when they lead to discolouration of mussel shells hence giving them the ability to reduce stressful heat gain during periods of extreme heat stress. Mussels are ecological engineers on which the abundance and diversity of associated species assemblages depend. Understanding how endolithic cyanobacteria affect mussels will not only help in predicting future patterns of mussel abundances, but also future patterns of the infauna that depend on them. Firstly, I identified endolithic species infesting mussels and assessed the prevalence of endolithic parasitism in two intertidal mussel species in South Africa, the native Perna perna and the invasive Mytilus galloprovincialis. Large-scale surveys of endolithic infestation of mussels were conducted along 2500 km of the South African coast, covering three biogeographic regions: the subtropical east coast, dominated by P. perna, the warm temperate south coast where the indigenous species coexists with M. galloprovincialis, and the cool temperate west coast which is dominated by M. galloprovincialis. The prevalence of endolithic infestation was higher in the cool temperate bioregion than in the warm temperate and subtropical bioregions which did not differ and for P. perna endolithic species assemblages revealed clear groupings by bioregion. Results for endolithic induced mortality followed the same trend, with no significant difference between the two mussel species where they coexist and these results attribute biogeography of endoliths to environmental factors rather than host identity. Secondly, I assessed energy budgets of infested and clean mussels, to evaluate the energetic cost of infestation. This involved measuring energy acquisition, expenditure, calculating scope for growth and lethal temperatures (LT50s). The results revealed that endolithic cyanobacteria have a negative effect on scope for growth due to increased metabolic rates for infested mussels, with no effect of endoliths on the rates or efficiency of energy acquisition through filtration and no effect on lethal temperatures. The effects of infestation were then examined in more detail through a qualitative and quantitative analysis of mussel gonads and byssal attachment strength to the substratum. Endolithic infestation was found to affect reproduction by affecting the size (mass) of gonads, but not the density of eggs within them. Attachment strength was affected by endolithic infestation with very infested mussels requiring much less force to detach them from the substratum compared to mussels with low or no infestation. These results show that endolithic infestation affects mussel fitness by directly affecting attachment strength and by reducing their reproductive output. Thirdly, endolithic succession within mussel shells was examined by assessing endolithic species composition in different regions of the shell and as a function of time. The results on the spatial distribution of endolith species within a shell supported those for temporal succession in shells deployed in the field. Endolithic species that were early colonists of clean shells were similar to those that were found in the distal edge, the new and growing region of the shell and species that arrived late in succession were similar to endolithic species found near the umbo, the oldest region of the shell. Overall, the study shows that endolithic cyanobacteria show the effects of biogeography on species distribution and clear patterns of succession within mussel shells. Cyanobacteria affect mussels negatively; they lead to low scope for growth and hence low growth rates, low reproductive output and reduced attachment strength for infested mussels. This, in turn is expected to have indirect consequences for other species that rely on mussels as ecological engineers for their survival.
- Full Text:
- Authors: Ndhlovu, Aldwin
- Date: 2020
- Subjects: Cyanobacteria -- South Africa , Cyanobacteria -- Geographical distribution , Prokaryotes -- South Africa , Mexilhao mussel -- South Africa , Mytilus galloprovincialis -- South Africa , Coastal biology -- South Africa , Coastal ecology -- South Africa , Mussels -- Geographical distribution , Mussels -- Predators of , Mussels -- Mortality -- South Africa , Mussels -- Ecology -- South Africa , Mussels -- Growth -- South Africa , Mussels -- Fertility -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/144656 , vital:38367
- Description: Endolithic cyanobacterial species occur in a wide range of environments including cold and hot deserts as well as marine systems where they attack biological material such as corals and the shells of molluscs including limpets, mussels and abalone. Endoliths live as parasites in mussel shells, where they erode and extract calcium carbonate leading to shell weakening, creating fracture holes that lead to shell collapse and death, but they also have positive effects when they lead to discolouration of mussel shells hence giving them the ability to reduce stressful heat gain during periods of extreme heat stress. Mussels are ecological engineers on which the abundance and diversity of associated species assemblages depend. Understanding how endolithic cyanobacteria affect mussels will not only help in predicting future patterns of mussel abundances, but also future patterns of the infauna that depend on them. Firstly, I identified endolithic species infesting mussels and assessed the prevalence of endolithic parasitism in two intertidal mussel species in South Africa, the native Perna perna and the invasive Mytilus galloprovincialis. Large-scale surveys of endolithic infestation of mussels were conducted along 2500 km of the South African coast, covering three biogeographic regions: the subtropical east coast, dominated by P. perna, the warm temperate south coast where the indigenous species coexists with M. galloprovincialis, and the cool temperate west coast which is dominated by M. galloprovincialis. The prevalence of endolithic infestation was higher in the cool temperate bioregion than in the warm temperate and subtropical bioregions which did not differ and for P. perna endolithic species assemblages revealed clear groupings by bioregion. Results for endolithic induced mortality followed the same trend, with no significant difference between the two mussel species where they coexist and these results attribute biogeography of endoliths to environmental factors rather than host identity. Secondly, I assessed energy budgets of infested and clean mussels, to evaluate the energetic cost of infestation. This involved measuring energy acquisition, expenditure, calculating scope for growth and lethal temperatures (LT50s). The results revealed that endolithic cyanobacteria have a negative effect on scope for growth due to increased metabolic rates for infested mussels, with no effect of endoliths on the rates or efficiency of energy acquisition through filtration and no effect on lethal temperatures. The effects of infestation were then examined in more detail through a qualitative and quantitative analysis of mussel gonads and byssal attachment strength to the substratum. Endolithic infestation was found to affect reproduction by affecting the size (mass) of gonads, but not the density of eggs within them. Attachment strength was affected by endolithic infestation with very infested mussels requiring much less force to detach them from the substratum compared to mussels with low or no infestation. These results show that endolithic infestation affects mussel fitness by directly affecting attachment strength and by reducing their reproductive output. Thirdly, endolithic succession within mussel shells was examined by assessing endolithic species composition in different regions of the shell and as a function of time. The results on the spatial distribution of endolith species within a shell supported those for temporal succession in shells deployed in the field. Endolithic species that were early colonists of clean shells were similar to those that were found in the distal edge, the new and growing region of the shell and species that arrived late in succession were similar to endolithic species found near the umbo, the oldest region of the shell. Overall, the study shows that endolithic cyanobacteria show the effects of biogeography on species distribution and clear patterns of succession within mussel shells. Cyanobacteria affect mussels negatively; they lead to low scope for growth and hence low growth rates, low reproductive output and reduced attachment strength for infested mussels. This, in turn is expected to have indirect consequences for other species that rely on mussels as ecological engineers for their survival.
- Full Text:
Bioinformatic analysis of Aminoacyl tRNA Synthetases as potential antimalarial drug targets
- Authors: Nyamai, Dorothy Wavinya
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/164579 , vital:41142 , doi:10.21504/10962/164579
- Description: Thesis (PhD)--Rhodes University, Faculty of Science, Biochemistry and Microbiology, 2020
- Full Text:
- Authors: Nyamai, Dorothy Wavinya
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/164579 , vital:41142 , doi:10.21504/10962/164579
- Description: Thesis (PhD)--Rhodes University, Faculty of Science, Biochemistry and Microbiology, 2020
- Full Text:
Biological control of Salvinia molesta (DS Mitchell) drives aquatic ecosystem recovery
- Motitsoe, Samuel N, Coetzee, Julie A, Hill, Jaclyn M, Hill, Martin P
- Authors: Motitsoe, Samuel N , Coetzee, Julie A , Hill, Jaclyn M , Hill, Martin P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444515 , vital:74247 , https://doi.org/10.3390/d12050204
- Description: Salvinia molesta D.S. Mitchell (Salviniaceae) is a damaging free-floating invasive alien macrophyte native to South America. The biological control programme against S. molesta by the weevil Cyrtobagous salviniae Calder and Sands (Erirhinidae) has been successful in controlling S. molesta infestations in the introduced range, however, there is some debate as to how biological control success is measured. This study measured the response of epilithic algae and aquatic macroinvertebrate communities in a S. molesta-dominated state and subsequently where the weed had been cleared by biological control, as a proxy for ecosystem recovery in a before–after control–impact mesocosm experiment.
- Full Text:
- Authors: Motitsoe, Samuel N , Coetzee, Julie A , Hill, Jaclyn M , Hill, Martin P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444515 , vital:74247 , https://doi.org/10.3390/d12050204
- Description: Salvinia molesta D.S. Mitchell (Salviniaceae) is a damaging free-floating invasive alien macrophyte native to South America. The biological control programme against S. molesta by the weevil Cyrtobagous salviniae Calder and Sands (Erirhinidae) has been successful in controlling S. molesta infestations in the introduced range, however, there is some debate as to how biological control success is measured. This study measured the response of epilithic algae and aquatic macroinvertebrate communities in a S. molesta-dominated state and subsequently where the weed had been cleared by biological control, as a proxy for ecosystem recovery in a before–after control–impact mesocosm experiment.
- Full Text:
Biological control of water lettuce, Pistia stratiotes L., facilitates macroinvertebrate biodiversity recovery: a mesocosm study
- Coetzee, Julie A, Langa, Susana D, Motitsoe, Samuel N, Hill, Martin P
- Authors: Coetzee, Julie A , Langa, Susana D , Motitsoe, Samuel N , Hill, Martin P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/423967 , vital:72112 , xlink:href="https://doi.org/10.1007/s10750-020-04369-w"
- Description: Floating aquatic weed infestations have negative socio-economic and environmental consequences to the ecosystems they invade. Despite the long history of invasion by macrophytes, only a few studies focus on their impacts on biodiversity, while the ecological benefits of biological control programmes against these species have been poorly quantified. We investigated the process of biotic homogenization following invasion by Pistia stratiotes on aquatic biodiversity, and recovery provided by biological control of this weed. Biotic homogenization is the increased similarity of biota as a result of introductions of non-native species. The study quantified the effect of P. stratiotes, and its biological control through the introduction of the weevil, Neohydronomus affinis on recruitment of benthic macroinvertebrates to artificial substrates. Mats of P. stratiotes altered the community composition and reduced diversity of benthic macroinvertebrates in comparison to an uninvaded control. However, reduction in percentage cover of the weed through biological control resulted in a significant increase in dissolved oxygen, and recovery of the benthic macroinvertebrate community that was comparable to the uninvaded state. This highlights the process of homogenization by an invasive macrophyte, providing a justification for sustained ecological and restoration efforts in the biological control of P. stratiotes where this plant is problematic.
- Full Text:
- Authors: Coetzee, Julie A , Langa, Susana D , Motitsoe, Samuel N , Hill, Martin P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/423967 , vital:72112 , xlink:href="https://doi.org/10.1007/s10750-020-04369-w"
- Description: Floating aquatic weed infestations have negative socio-economic and environmental consequences to the ecosystems they invade. Despite the long history of invasion by macrophytes, only a few studies focus on their impacts on biodiversity, while the ecological benefits of biological control programmes against these species have been poorly quantified. We investigated the process of biotic homogenization following invasion by Pistia stratiotes on aquatic biodiversity, and recovery provided by biological control of this weed. Biotic homogenization is the increased similarity of biota as a result of introductions of non-native species. The study quantified the effect of P. stratiotes, and its biological control through the introduction of the weevil, Neohydronomus affinis on recruitment of benthic macroinvertebrates to artificial substrates. Mats of P. stratiotes altered the community composition and reduced diversity of benthic macroinvertebrates in comparison to an uninvaded control. However, reduction in percentage cover of the weed through biological control resulted in a significant increase in dissolved oxygen, and recovery of the benthic macroinvertebrate community that was comparable to the uninvaded state. This highlights the process of homogenization by an invasive macrophyte, providing a justification for sustained ecological and restoration efforts in the biological control of P. stratiotes where this plant is problematic.
- Full Text:
Biological control potential of ectomycorrhizal fungi against Fusarium circinatum on Pinus patula seedlings
- Chartier FitzGerald, Veronique C, Dames, Joanna F, Hawley, Grant L
- Authors: Chartier FitzGerald, Veronique C , Dames, Joanna F , Hawley, Grant L
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425960 , vital:72302 , xlink:href="https://doi.org/10.1080/09583157.2020.1771542"
- Description: The South Africa forestry industry, covering ∼1.3 million hectares, is dependent on exotic pine and Eucalyptus species. Nursery seedlings are not inoculated with ectomycorrhizal (ECM) fungi or other beneficial microbes. Fusarium circinatum is an economically important pathogen affecting seedling survival. The purpose of this investigation was to assess the effects of ectomycorrhizal fungal inoculation on Pinus patula seedling growth and resistance to the fungal pathogen F. circinatum. Explants from ECM basidiocarps, collected from Pinus stands, were plated onto MMN medium to obtain isolates that were then verified via DNA extraction and PCR amplification and sequencing of the ITS rDNA region. These isolates were identified as Boletus edulis f. reticulatus, Lactarius quieticolor, Suillus granulatus and an unknown Suillus species. P. patula growth in the presence of the pathogen F. circinatum was significantly increased and promoted by the L. quieticolor and Suillus isolates. Preventative inoculation of seedlings in the nursery using these isolates would ensure the production of stronger, healthier plants that would be more resistant to F. circinatum infection, increasing survival in the plantation.
- Full Text:
- Authors: Chartier FitzGerald, Veronique C , Dames, Joanna F , Hawley, Grant L
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425960 , vital:72302 , xlink:href="https://doi.org/10.1080/09583157.2020.1771542"
- Description: The South Africa forestry industry, covering ∼1.3 million hectares, is dependent on exotic pine and Eucalyptus species. Nursery seedlings are not inoculated with ectomycorrhizal (ECM) fungi or other beneficial microbes. Fusarium circinatum is an economically important pathogen affecting seedling survival. The purpose of this investigation was to assess the effects of ectomycorrhizal fungal inoculation on Pinus patula seedling growth and resistance to the fungal pathogen F. circinatum. Explants from ECM basidiocarps, collected from Pinus stands, were plated onto MMN medium to obtain isolates that were then verified via DNA extraction and PCR amplification and sequencing of the ITS rDNA region. These isolates were identified as Boletus edulis f. reticulatus, Lactarius quieticolor, Suillus granulatus and an unknown Suillus species. P. patula growth in the presence of the pathogen F. circinatum was significantly increased and promoted by the L. quieticolor and Suillus isolates. Preventative inoculation of seedlings in the nursery using these isolates would ensure the production of stronger, healthier plants that would be more resistant to F. circinatum infection, increasing survival in the plantation.
- Full Text:
Biomes, geology and past climate drive speciation of laminate-toothed rats on South African mountains (Murinae: Otomys)
- Taylor, Peter J, Kearney, Theresa, Dalton, Desire L, Chakona, Gamuchirai, Kelly, Christopher M R, Barker, Nigel P
- Authors: Taylor, Peter J , Kearney, Theresa , Dalton, Desire L , Chakona, Gamuchirai , Kelly, Christopher M R , Barker, Nigel P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425481 , vital:72249 , xlink:href="https://doi.org/10.1093/zoolinnean/zlz134"
- Description: Mitochondrial DNA sequences (1137 bp) of the cytochrome b gene and craniodental and craniometric data were used to investigate the evolutionary relationships of six putative rodent taxa of Otomys (family Muridae: subfamily Murinae: tribe Otomyini) co-occurring in the Western Cape and Eastern Cape provinces of South Africa. Phylogenetic analysis of 20 new sequences together with craniodental and craniometric characters of 94 adult skulls reveal the existence of a unique lineage of Otomys cf. karoensis (named herein Otomys willani sp. nov.) from the Sneeuberg Centre of Floristic Endemism in the southern Drakensberg Mountain Range. Craniometric analysis distinguished O. karoensis from O. willani and identified a further four localities in the range of the latter species. We document southern range extensions of both Sloggett’s ice rat, Otomys sloggetti, and the vlei rat Otomys auratus to the Sneeuberg Mountain Range, in addition to appreciable genetic divergence between Sneeuberg and southern and central Drakensberg populations of O. sloggetti. Our results demonstrate parallel patterns of cryptic speciation in two co-occurring species complexes (Otomys irroratus s.l. and O. karoensis s.l.) associated closely with the boundaries of biomes (fynbos vs. grassland biomes) and geological formations (Cape Fold Belt vs. Great Escarpment).
- Full Text:
- Authors: Taylor, Peter J , Kearney, Theresa , Dalton, Desire L , Chakona, Gamuchirai , Kelly, Christopher M R , Barker, Nigel P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425481 , vital:72249 , xlink:href="https://doi.org/10.1093/zoolinnean/zlz134"
- Description: Mitochondrial DNA sequences (1137 bp) of the cytochrome b gene and craniodental and craniometric data were used to investigate the evolutionary relationships of six putative rodent taxa of Otomys (family Muridae: subfamily Murinae: tribe Otomyini) co-occurring in the Western Cape and Eastern Cape provinces of South Africa. Phylogenetic analysis of 20 new sequences together with craniodental and craniometric characters of 94 adult skulls reveal the existence of a unique lineage of Otomys cf. karoensis (named herein Otomys willani sp. nov.) from the Sneeuberg Centre of Floristic Endemism in the southern Drakensberg Mountain Range. Craniometric analysis distinguished O. karoensis from O. willani and identified a further four localities in the range of the latter species. We document southern range extensions of both Sloggett’s ice rat, Otomys sloggetti, and the vlei rat Otomys auratus to the Sneeuberg Mountain Range, in addition to appreciable genetic divergence between Sneeuberg and southern and central Drakensberg populations of O. sloggetti. Our results demonstrate parallel patterns of cryptic speciation in two co-occurring species complexes (Otomys irroratus s.l. and O. karoensis s.l.) associated closely with the boundaries of biomes (fynbos vs. grassland biomes) and geological formations (Cape Fold Belt vs. Great Escarpment).
- Full Text:
Biomes, geology and past climate drive speciation of laminate-toothed rats on South African mountains (Murinae: Otomys)
- Taylor, Peter J, Kearney, Theresa, Dalton, Desire L, Chakona, Gamuchirai, Kelly, Christopher M R, Barker, Nigel P
- Authors: Taylor, Peter J , Kearney, Theresa , Dalton, Desire L , Chakona, Gamuchirai , Kelly, Christopher M R , Barker, Nigel P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/453158 , vital:75227 , xlink:href="https://doi.org/10.1093/zoolinnean/zlz134"
- Description: Mitochondrial DNA sequences (1137 bp) of the cytochrome b gene and craniodental and craniometric data were used to investigate the evolutionary relationships of six putative rodent taxa of Otomys (family Muridae: subfamily Murinae: tribe Otomyini) co-occurring in the Western Cape and Eastern Cape provinces of South Africa. Phylogenetic analysis of 20 new sequences together with craniodental and craniometric characters of 94 adult skulls reveal the existence of a unique lineage of Otomys cf. karoensis (named herein Otomys willani sp. nov.) from the Sneeuberg Centre of Floristic Endemism in the southern Drakensberg Mountain Range. Craniometric analysis distinguished O. karoensis from O. willani and identified a further four localities in the range of the latter species. We document southern range extensions of both Sloggett’s ice rat, Otomys sloggetti, and the vlei rat Otomys auratus to the Sneeuberg Mountain Range, in addition to appreciable genetic divergence between Sneeuberg and southern and central Drakensberg populations of O. sloggetti. Our results demonstrate parallel patterns of cryptic speciation in two co-occurring species complexes (Otomys irroratus s.l. and O. karoensis s.l.) associated closely with the boundaries of biomes (fynbos vs. grassland biomes) and geological formations (Cape Fold Belt vs. Great Escarpment).
- Full Text:
- Authors: Taylor, Peter J , Kearney, Theresa , Dalton, Desire L , Chakona, Gamuchirai , Kelly, Christopher M R , Barker, Nigel P
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/453158 , vital:75227 , xlink:href="https://doi.org/10.1093/zoolinnean/zlz134"
- Description: Mitochondrial DNA sequences (1137 bp) of the cytochrome b gene and craniodental and craniometric data were used to investigate the evolutionary relationships of six putative rodent taxa of Otomys (family Muridae: subfamily Murinae: tribe Otomyini) co-occurring in the Western Cape and Eastern Cape provinces of South Africa. Phylogenetic analysis of 20 new sequences together with craniodental and craniometric characters of 94 adult skulls reveal the existence of a unique lineage of Otomys cf. karoensis (named herein Otomys willani sp. nov.) from the Sneeuberg Centre of Floristic Endemism in the southern Drakensberg Mountain Range. Craniometric analysis distinguished O. karoensis from O. willani and identified a further four localities in the range of the latter species. We document southern range extensions of both Sloggett’s ice rat, Otomys sloggetti, and the vlei rat Otomys auratus to the Sneeuberg Mountain Range, in addition to appreciable genetic divergence between Sneeuberg and southern and central Drakensberg populations of O. sloggetti. Our results demonstrate parallel patterns of cryptic speciation in two co-occurring species complexes (Otomys irroratus s.l. and O. karoensis s.l.) associated closely with the boundaries of biomes (fynbos vs. grassland biomes) and geological formations (Cape Fold Belt vs. Great Escarpment).
- Full Text:
BODIPY dyes for application in the photo-oxidation of pollutants, photodynamic antimicrobial chemotherapy, and nonlinear optics
- Authors: Kelechi, Lebechi Augustus
- Date: 2020
- Subjects: Dyes and dyeing -- Chemistry , Fluorescent probes , Fluorescence spectroscopy
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/140298 , vital:37859
- Description: The synthesis and structural characterization of a series of BODIPY dyes to analyze both the effects of halogenations at the 2,6-positions and the introduction of styryl groups at the 3,5-positions. The photophysical properties of these dyes were investigated to determine their suitability as singlet oxygen-generating photosensitiser dyes for application in photocatalytic degradation of azo dyes and in photodynamic antimicrobial chemotherapy (PACT). Upon halogenation, the dyes showed high to moderate singlet oxygen quantum yields. The potential utility of electrospun polystyrene (PS) nanofibres embedded with halogenated BODIPY dyes for the photocatalytic degradation of Orange G and Methyl Orange from textile industry effluents were investigated. A comparison of the singlet oxygen quantum yield of the BODIPY dyes in solution and when embedded in the PS nanofibres support demonstrates that its photosensitiser properties are maintained in the nanofibre mats. The photocatalytic degradation properties of the PS nanofibres for Orange G and Methyl Orange were determined by using a 530 nm and 660 nm light-emitting diodes. The rate of photodegradation increases with both the Orange G and Methyl Orange concentrations and follows pseudo-first-order kinetics. The PACT activities of brominated BODIPYs on Escherichia coli and Staphylococcus aureus were investigated. Log reduction values of over 9 were obtained during the photoinactivation of Staphylococcus aureus. To be able to red-shift the main spectral band of the BODIPY dyes into the therapeutic window, styryl groups were introduced at the 3,5-positions through a modified Knoevenagel condensation reaction. Because the red-shifted spectral band lies above 532 nm, the second harmonic of the Nd:YAG laser, there is very minute absorption at this wavelength. One of the novel brominated BODIPY dyes was investigated for its potential utility as optical limiting materials in nonlinear optics (NLO), and the dyes demonstrated typical nonlinear absorption behaviour characterised by reverse saturable absorption (RSA) in Z-scan measurements. Excellent optical limiting parameters were obtained for third-order susceptibility and hyperpolarisability.
- Full Text:
- Authors: Kelechi, Lebechi Augustus
- Date: 2020
- Subjects: Dyes and dyeing -- Chemistry , Fluorescent probes , Fluorescence spectroscopy
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/140298 , vital:37859
- Description: The synthesis and structural characterization of a series of BODIPY dyes to analyze both the effects of halogenations at the 2,6-positions and the introduction of styryl groups at the 3,5-positions. The photophysical properties of these dyes were investigated to determine their suitability as singlet oxygen-generating photosensitiser dyes for application in photocatalytic degradation of azo dyes and in photodynamic antimicrobial chemotherapy (PACT). Upon halogenation, the dyes showed high to moderate singlet oxygen quantum yields. The potential utility of electrospun polystyrene (PS) nanofibres embedded with halogenated BODIPY dyes for the photocatalytic degradation of Orange G and Methyl Orange from textile industry effluents were investigated. A comparison of the singlet oxygen quantum yield of the BODIPY dyes in solution and when embedded in the PS nanofibres support demonstrates that its photosensitiser properties are maintained in the nanofibre mats. The photocatalytic degradation properties of the PS nanofibres for Orange G and Methyl Orange were determined by using a 530 nm and 660 nm light-emitting diodes. The rate of photodegradation increases with both the Orange G and Methyl Orange concentrations and follows pseudo-first-order kinetics. The PACT activities of brominated BODIPYs on Escherichia coli and Staphylococcus aureus were investigated. Log reduction values of over 9 were obtained during the photoinactivation of Staphylococcus aureus. To be able to red-shift the main spectral band of the BODIPY dyes into the therapeutic window, styryl groups were introduced at the 3,5-positions through a modified Knoevenagel condensation reaction. Because the red-shifted spectral band lies above 532 nm, the second harmonic of the Nd:YAG laser, there is very minute absorption at this wavelength. One of the novel brominated BODIPY dyes was investigated for its potential utility as optical limiting materials in nonlinear optics (NLO), and the dyes demonstrated typical nonlinear absorption behaviour characterised by reverse saturable absorption (RSA) in Z-scan measurements. Excellent optical limiting parameters were obtained for third-order susceptibility and hyperpolarisability.
- Full Text:
BODIPY dyes for use in nonlinear optics and optical sensing
- Authors: Kubheka, Gugu Patience
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/163352 , vital:41032 , doi:10.21504/10962/163352
- Description: Thesis (PhD)--Rhodes University, Faculty of Science, Department of Chemistry, 2020.
- Full Text:
- Authors: Kubheka, Gugu Patience
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/163352 , vital:41032 , doi:10.21504/10962/163352
- Description: Thesis (PhD)--Rhodes University, Faculty of Science, Department of Chemistry, 2020.
- Full Text:
Body mass and condition of a fynbos bird community investigating impacts of time, weather and raptor abundance from long-term citizen-science datasets
- Lee, Alan T K, Barnard, Phoebe, Fraser, Mike, Lennard, Chris, Smit, Ben, Oschadleus, Hans-Dieter
- Authors: Lee, Alan T K , Barnard, Phoebe , Fraser, Mike , Lennard, Chris , Smit, Ben , Oschadleus, Hans-Dieter
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441546 , vital:73897 , https://doi.org/10.2989/00306525.2019.1683093
- Description: Variation in body size, especially mass, is a function of local environmental conditions for any given species. Recent recorded decreases in body size of endotherms have been attributed to climate change in some cases. This prediction is based on the trend of smaller body size of endotherms in warmer climates (Bergmann’s rule) and it implies genetic responses rather than phenotypic flexibility. Alternatively, selection for smaller body size or lower mass could be explained by the starvation-predation hypothesis, where lighter individuals have a higher probability of escaping pursuing predators, such as raptors. Evidence that climate warming is driving patterns of size selection in birds in recent times has been mixed. We inspected data on 40 bird species contributed by bird ringers to the South African Ringing Scheme (SAFRING) for changes in body mass and condition as a function of time (year), minimum temperature of the day of capture, maximum temperature of the previous day, and rainfall data in the south-western Cape Floristic Region (fynbos) around Cape Town, South Africa, for the period 1988–2015. The region shows a warming trend over the study period (0.035 °C yr−1). Interannual body mass and condition change were poorly explained by year or temperature. High daily minimum temperature explained loss of body condition for four species, whereas evidence from recaptured birds indicated negative effects of increasing maximum daily temperature, as well as rain. For the alternative hypothesis, because raptor abundance is stable or only weakly declining, there is little evidence to suggest these as a driver influencing mass trends. Any decrease in body mass over the study period that we observed for birds appear more likely to be plastic responses to stress associated with temperature or rainfall at this time, rather than systematic selection for smaller body size, as predicted by Bergmann’s Rule.
- Full Text:
- Authors: Lee, Alan T K , Barnard, Phoebe , Fraser, Mike , Lennard, Chris , Smit, Ben , Oschadleus, Hans-Dieter
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441546 , vital:73897 , https://doi.org/10.2989/00306525.2019.1683093
- Description: Variation in body size, especially mass, is a function of local environmental conditions for any given species. Recent recorded decreases in body size of endotherms have been attributed to climate change in some cases. This prediction is based on the trend of smaller body size of endotherms in warmer climates (Bergmann’s rule) and it implies genetic responses rather than phenotypic flexibility. Alternatively, selection for smaller body size or lower mass could be explained by the starvation-predation hypothesis, where lighter individuals have a higher probability of escaping pursuing predators, such as raptors. Evidence that climate warming is driving patterns of size selection in birds in recent times has been mixed. We inspected data on 40 bird species contributed by bird ringers to the South African Ringing Scheme (SAFRING) for changes in body mass and condition as a function of time (year), minimum temperature of the day of capture, maximum temperature of the previous day, and rainfall data in the south-western Cape Floristic Region (fynbos) around Cape Town, South Africa, for the period 1988–2015. The region shows a warming trend over the study period (0.035 °C yr−1). Interannual body mass and condition change were poorly explained by year or temperature. High daily minimum temperature explained loss of body condition for four species, whereas evidence from recaptured birds indicated negative effects of increasing maximum daily temperature, as well as rain. For the alternative hypothesis, because raptor abundance is stable or only weakly declining, there is little evidence to suggest these as a driver influencing mass trends. Any decrease in body mass over the study period that we observed for birds appear more likely to be plastic responses to stress associated with temperature or rainfall at this time, rather than systematic selection for smaller body size, as predicted by Bergmann’s Rule.
- Full Text:
Body mass and condition of a fynbos bird community investigating impacts of time, weather and raptor abundance from long-term citizen-science datasets
- Lee, Alan T K, Barnard, Phoebe, Fraser, Mike, Lennard, Chris, Smit, Ben, Oschadleus, Hans-Dieter
- Authors: Lee, Alan T K , Barnard, Phoebe , Fraser, Mike , Lennard, Chris , Smit, Ben , Oschadleus, Hans-Dieter
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448383 , vital:74726 , https://doi.org/10.2989/00306525.2019.1683093
- Description: Variation in body size, especially mass, is a function of local environmental conditions for any given species. Recent recorded decreases in body size of endotherms have been attributed to climate change in some cases. This prediction is based on the trend of smaller body size of endotherms in warmer climates (Bergmann’s rule) and it implies genetic responses rather than phenotypic flexibility. Alternatively, selection for smaller body size or lower mass could be explained by the starvation-predation hypothesis, where lighter individuals have a higher probability of escaping pursuing predators, such as raptors. Evidence that climate warming is driving patterns of size selection in birds in recent times has been mixed. We inspected data on 40 bird species contributed by bird ringers to the South African Ringing Scheme (SAFRING) for changes in body mass and condition as a function of time (year), minimum temperature of the day of capture, maximum temperature of the previous day, and rainfall data in the south-western Cape Floristic Region (fynbos) around Cape Town, South Africa, for the period 1988–2015.
- Full Text:
- Authors: Lee, Alan T K , Barnard, Phoebe , Fraser, Mike , Lennard, Chris , Smit, Ben , Oschadleus, Hans-Dieter
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448383 , vital:74726 , https://doi.org/10.2989/00306525.2019.1683093
- Description: Variation in body size, especially mass, is a function of local environmental conditions for any given species. Recent recorded decreases in body size of endotherms have been attributed to climate change in some cases. This prediction is based on the trend of smaller body size of endotherms in warmer climates (Bergmann’s rule) and it implies genetic responses rather than phenotypic flexibility. Alternatively, selection for smaller body size or lower mass could be explained by the starvation-predation hypothesis, where lighter individuals have a higher probability of escaping pursuing predators, such as raptors. Evidence that climate warming is driving patterns of size selection in birds in recent times has been mixed. We inspected data on 40 bird species contributed by bird ringers to the South African Ringing Scheme (SAFRING) for changes in body mass and condition as a function of time (year), minimum temperature of the day of capture, maximum temperature of the previous day, and rainfall data in the south-western Cape Floristic Region (fynbos) around Cape Town, South Africa, for the period 1988–2015.
- Full Text:
Building a flexible and inexpensive multi-layer switch for software-defined networks
- Authors: Magwenzi, Tinashe
- Date: 2020
- Subjects: Software-defined networking (Computer network technology) , Telecommunication -- Switching systems , OpenFlow (Computer network protocol) , Local area networks (Computer networks)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/142841 , vital:38122
- Description: Software-Defined Networking (SDN) is a paradigm which enables the realisation of programmable network through the separation of the control logic from the forwarding functions. This separation is a departure from the traditional architecture. Much of the work done in SDN enabled devices has concentrated on higher end, high speed networks (10s GBit/s 100s GBit/s), rather than the relatively low bandwidth links (10s MBit/s to a few GBit/s) which are seen, for example, in South Africa. As SDN is increasingly becoming more accepted, due to its advantages over the traditional networks, it has been adopted for industrial purposes such as networking in data centres and network providers. The demand for programmable networks is increasing but is limited by the ability of providers to upgrade their infrastructure. In addition, as access to the Internet has become less expensive, the use of Internet is increasing in academic institutions, NGOs, and small to medium enterprises. This thesis details a means of building and managing a small scale Software-Defined Network using commodity hardware and open source tools. Core to the SDN Network illustrated in this thesis is the prototype of a multi-layer SDN switch. The proposed device is targeted to serve lower bandwidth communication (in relation to commercially produced high speed SDN-enabled devices). The performance of the prototype multilayer switch had shown to achieve: data-rates of up to 99.998%, average latencies that are under 40µs during forwarding/switching and under 100µs during routing while using packet sizes between 64 bytes and 1518 bytes, and a jitter of less than 15µs during all tests. This research explores in detail the design, development, and management of a multi-layer switch and its placement and integration in small scale SDN network. This includes testing of Layer 2 forwarding and Layer 3 routing, OpenFlow compliance testing, the management of the switch using created SDN applications, and real life network functionality such as forwarding, routing and VLAN networking to demonstrate its real world applicability.
- Full Text:
- Authors: Magwenzi, Tinashe
- Date: 2020
- Subjects: Software-defined networking (Computer network technology) , Telecommunication -- Switching systems , OpenFlow (Computer network protocol) , Local area networks (Computer networks)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/142841 , vital:38122
- Description: Software-Defined Networking (SDN) is a paradigm which enables the realisation of programmable network through the separation of the control logic from the forwarding functions. This separation is a departure from the traditional architecture. Much of the work done in SDN enabled devices has concentrated on higher end, high speed networks (10s GBit/s 100s GBit/s), rather than the relatively low bandwidth links (10s MBit/s to a few GBit/s) which are seen, for example, in South Africa. As SDN is increasingly becoming more accepted, due to its advantages over the traditional networks, it has been adopted for industrial purposes such as networking in data centres and network providers. The demand for programmable networks is increasing but is limited by the ability of providers to upgrade their infrastructure. In addition, as access to the Internet has become less expensive, the use of Internet is increasing in academic institutions, NGOs, and small to medium enterprises. This thesis details a means of building and managing a small scale Software-Defined Network using commodity hardware and open source tools. Core to the SDN Network illustrated in this thesis is the prototype of a multi-layer SDN switch. The proposed device is targeted to serve lower bandwidth communication (in relation to commercially produced high speed SDN-enabled devices). The performance of the prototype multilayer switch had shown to achieve: data-rates of up to 99.998%, average latencies that are under 40µs during forwarding/switching and under 100µs during routing while using packet sizes between 64 bytes and 1518 bytes, and a jitter of less than 15µs during all tests. This research explores in detail the design, development, and management of a multi-layer switch and its placement and integration in small scale SDN network. This includes testing of Layer 2 forwarding and Layer 3 routing, OpenFlow compliance testing, the management of the switch using created SDN applications, and real life network functionality such as forwarding, routing and VLAN networking to demonstrate its real world applicability.
- Full Text:
Building knowledge with theory: Unpacking complexity in doctoral writing
- Authors: Wilmot, Kirstin
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439480 , vital:73600 , https://www.ajol.info/index.php/cristal/article/view/203971
- Description: The use of theory to analyse and interpret empirical data is a valued practice in much social science doctoral research. A crucial aspect of this practice involves generating sophisticated theoretical understandings and critiques of phenomena in our social world. Despite the importance of theory, however, few concrete explanations of how to ‘theorise’exist in literature. This paper addresses this gap by demonstrating how a set of conceptual tools can be used to unpack what the craft of theorising looks like in explicit terms, and to reveal how this ability develops over time during the drafting process of dissertation writing. It does this by drawing on select texts from a successful doctoral dissertation, as well as an earlier draft version. In doing so, the paper provides an in-depth explanation of an essential process of doctoral research that is inherently known by many supervisors, yet seldom unpacked in explicit terms.
- Full Text:
- Authors: Wilmot, Kirstin
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/439480 , vital:73600 , https://www.ajol.info/index.php/cristal/article/view/203971
- Description: The use of theory to analyse and interpret empirical data is a valued practice in much social science doctoral research. A crucial aspect of this practice involves generating sophisticated theoretical understandings and critiques of phenomena in our social world. Despite the importance of theory, however, few concrete explanations of how to ‘theorise’exist in literature. This paper addresses this gap by demonstrating how a set of conceptual tools can be used to unpack what the craft of theorising looks like in explicit terms, and to reveal how this ability develops over time during the drafting process of dissertation writing. It does this by drawing on select texts from a successful doctoral dissertation, as well as an earlier draft version. In doing so, the paper provides an in-depth explanation of an essential process of doctoral research that is inherently known by many supervisors, yet seldom unpacked in explicit terms.
- Full Text:
Calling rhythm as a predictor of the outcome of vocal interactions: flight departure in pale-winged starling pairs
- Hausberger, Martine, Giacalone, Aline, Harmand, Mariane, Craig, Adrian J F K, Henry, Laurence
- Authors: Hausberger, Martine , Giacalone, Aline , Harmand, Mariane , Craig, Adrian J F K , Henry, Laurence
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/449283 , vital:74808 , https://doi.org/10.1007/s00114-019-1658-1
- Description: Vocal communication plays an important role in the regulation of social interactions and the coordination of activities in many animal species. Synchrony is an essential part of the establishment and maintenance of pair bonds, but few reports have investigated decision-making at the pair level. We investigated temporal characteristics of call exchanges in pale-winged starlings (Onychognathus nabouroup) that could predict whether one, two, or neither members of a pair would take off. Our analysis of these interactions revealed that the overall rhythm of a call exchange, as well as the acceleration towards the end of an interaction, were significantly associated with the type of behavioural outcome. Faster rhythms were associated with higher probabilities that both birds would fly away. Our results confirm the findings of previous studies showing that higher rates of alarm calls indicate imminent departure and highlight the relationship between temporal features of vocal interactions and their outcome.
- Full Text:
- Authors: Hausberger, Martine , Giacalone, Aline , Harmand, Mariane , Craig, Adrian J F K , Henry, Laurence
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/449283 , vital:74808 , https://doi.org/10.1007/s00114-019-1658-1
- Description: Vocal communication plays an important role in the regulation of social interactions and the coordination of activities in many animal species. Synchrony is an essential part of the establishment and maintenance of pair bonds, but few reports have investigated decision-making at the pair level. We investigated temporal characteristics of call exchanges in pale-winged starlings (Onychognathus nabouroup) that could predict whether one, two, or neither members of a pair would take off. Our analysis of these interactions revealed that the overall rhythm of a call exchange, as well as the acceleration towards the end of an interaction, were significantly associated with the type of behavioural outcome. Faster rhythms were associated with higher probabilities that both birds would fly away. Our results confirm the findings of previous studies showing that higher rates of alarm calls indicate imminent departure and highlight the relationship between temporal features of vocal interactions and their outcome.
- Full Text:
Can fishing tourism contribute to conservation and sustainability via ecotourism?: a case study of the Fishery for Giant African Threadfin Polydactylus quadrifilis on the Kwanza Estuary, Angola
- Butler, Edward C, Childs, Amber-Robyn, Saayman, Andrea, Potts, Warren M
- Authors: Butler, Edward C , Childs, Amber-Robyn , Saayman, Andrea , Potts, Warren M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149253 , vital:38819 , https://doi.org/10.3390/su12104221
- Description: It has been suggested that tourism fisheries can raise the value of landed catch, provide alternative livelihoods for local artisanal fishers and, because recreationally caught fishes are often released, simultaneously conserve stocks. However, for fishing tourism to meet ecotourism standards, sustainable, local economic benefit is imperative. This study aimed to assess the direct economic contribution of the recreational fishery for Polydactylus quadrifilis on the Kwanza Estuary, Angola. The recreational fishery contributed significantly to economic productivity in an otherwise rural area, generating a total revenue (TR) of $236,826 per four-month fishing season.
- Full Text:
- Authors: Butler, Edward C , Childs, Amber-Robyn , Saayman, Andrea , Potts, Warren M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149253 , vital:38819 , https://doi.org/10.3390/su12104221
- Description: It has been suggested that tourism fisheries can raise the value of landed catch, provide alternative livelihoods for local artisanal fishers and, because recreationally caught fishes are often released, simultaneously conserve stocks. However, for fishing tourism to meet ecotourism standards, sustainable, local economic benefit is imperative. This study aimed to assess the direct economic contribution of the recreational fishery for Polydactylus quadrifilis on the Kwanza Estuary, Angola. The recreational fishery contributed significantly to economic productivity in an otherwise rural area, generating a total revenue (TR) of $236,826 per four-month fishing season.
- Full Text:
Carnivore intra-guild competition in Selati Game Reserve, Limpopo Province, South Africa
- Authors: Comley, Jessica
- Date: 2020
- Subjects: Hyenas -- Behavior -- South Africa , Hyenas -- South Africa , Hyenas -- Ecology -- South Africa , Top predators -- South Africa , Top predators -- Ecology -- South Africa , Animal communities -- South Africa , Animal behavior -- South Africa , Mutualism (Biology) -- South Africa , Coexistence of species -- South Africa , Game farms -- South Africa , Selati Game Reserve (South Africa)
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/115558 , vital:34163
- Description: Carnivore intra-guild interactions can be important drivers of carnivore community composition and ecosystem functioning. Large carnivores are particularly important since they occupy the highest trophic levels and can exert extensive influences on subordinate carnivores and prey species. Given Africa’s rapidly expanding human population, enclosed reserves such as those found in South Africa, may become increasingly important for carnivore conservation. A major concern, however, is that the interactions and co-existence of multiple carnivores in these systems is poorly understood. Additionally, the majority of reserves in South Africa are small ( 400km²), potentially increasing the likelihood of competition. My research aimed to provide insight into the interactions and co-existence of a multi-carnivore community within a small, enclosed reserve in South Africa (Selati Game Reserve). I tackled this task by using a combination of field techniques including camera trap surveys, ungulate transect surveys, aerial count surveys, location data collected from collared large carnivores and scat and kill site analyses. I found that carnivore-carnivore interactions, and their associated impacts, varied within the carnivore guild and that co-existence may be due to trade-offs between various risks (i.e. interference and exploitative competition) and benefits (i.e. resources such as food and space). My findings also revealed that large carnivores, such as lions (Panthera leo), spotted hyaenas (Crocuta crocuta) and leopards (Panthera pardus) do not have homogenous effects and that site-specific research on multiple-carnivores is integral for conserving biodiversity and ecosystem dynamics. Lions were the dominant large carnivore (in terms of intra-guild predation, space use and resource use) despite being outnumbered seven to one by spotted hyaenas. Leopard occupancy was negatively influenced by lions and leopard diet overlapped almost completely (91%) with spotted hyaenas, suggesting increased kleptoparasitism of leopard kills by spotted hyaenas. While my study provides valuable insight into the complexity of carnivore intra-guild competition in a small, enclosed reserve it also highlights major research gaps and emphasises the need for ecosystem-based research throughout southern Africa to fully understand how multiple sympatric carnivores co-exist in these systems.
- Full Text:
- Authors: Comley, Jessica
- Date: 2020
- Subjects: Hyenas -- Behavior -- South Africa , Hyenas -- South Africa , Hyenas -- Ecology -- South Africa , Top predators -- South Africa , Top predators -- Ecology -- South Africa , Animal communities -- South Africa , Animal behavior -- South Africa , Mutualism (Biology) -- South Africa , Coexistence of species -- South Africa , Game farms -- South Africa , Selati Game Reserve (South Africa)
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/115558 , vital:34163
- Description: Carnivore intra-guild interactions can be important drivers of carnivore community composition and ecosystem functioning. Large carnivores are particularly important since they occupy the highest trophic levels and can exert extensive influences on subordinate carnivores and prey species. Given Africa’s rapidly expanding human population, enclosed reserves such as those found in South Africa, may become increasingly important for carnivore conservation. A major concern, however, is that the interactions and co-existence of multiple carnivores in these systems is poorly understood. Additionally, the majority of reserves in South Africa are small ( 400km²), potentially increasing the likelihood of competition. My research aimed to provide insight into the interactions and co-existence of a multi-carnivore community within a small, enclosed reserve in South Africa (Selati Game Reserve). I tackled this task by using a combination of field techniques including camera trap surveys, ungulate transect surveys, aerial count surveys, location data collected from collared large carnivores and scat and kill site analyses. I found that carnivore-carnivore interactions, and their associated impacts, varied within the carnivore guild and that co-existence may be due to trade-offs between various risks (i.e. interference and exploitative competition) and benefits (i.e. resources such as food and space). My findings also revealed that large carnivores, such as lions (Panthera leo), spotted hyaenas (Crocuta crocuta) and leopards (Panthera pardus) do not have homogenous effects and that site-specific research on multiple-carnivores is integral for conserving biodiversity and ecosystem dynamics. Lions were the dominant large carnivore (in terms of intra-guild predation, space use and resource use) despite being outnumbered seven to one by spotted hyaenas. Leopard occupancy was negatively influenced by lions and leopard diet overlapped almost completely (91%) with spotted hyaenas, suggesting increased kleptoparasitism of leopard kills by spotted hyaenas. While my study provides valuable insight into the complexity of carnivore intra-guild competition in a small, enclosed reserve it also highlights major research gaps and emphasises the need for ecosystem-based research throughout southern Africa to fully understand how multiple sympatric carnivores co-exist in these systems.
- Full Text:
Changing curriculum and teaching practice A practical theory for academic staff development
- Clarence, Sherran, van Heerden, Martina
- Authors: Clarence, Sherran , van Heerden, Martina
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/445770 , vital:74428 , ISBN 9781003028215 , https://www.taylorfrancis.com/chapters/edit/10.4324/9781003028215-9/changing-curriculum-teaching-practice-sherran-clarence-martina-van-heerden
- Description: An underdeveloped aspect of academic staff development research in higher education is using theory to help academic lecturers to understand and inform their practices, so as to better enable student development and learning. This chapter illustrates how a theorized way of talking about teaching and learning, specifically using the LCT dimension of Semantics, both semantic waves and the semantic plane, may create exciting and productive conversations with academic lecturers. Using two ‘vignettes’ drawn from English Studies and Political Studies, the chapter illustrates how teaching practice and curriculum design can be enhanced by using LCT in academic staff development work, and by extension in curriculum design, teaching and assessment practice.
- Full Text:
- Authors: Clarence, Sherran , van Heerden, Martina
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/445770 , vital:74428 , ISBN 9781003028215 , https://www.taylorfrancis.com/chapters/edit/10.4324/9781003028215-9/changing-curriculum-teaching-practice-sherran-clarence-martina-van-heerden
- Description: An underdeveloped aspect of academic staff development research in higher education is using theory to help academic lecturers to understand and inform their practices, so as to better enable student development and learning. This chapter illustrates how a theorized way of talking about teaching and learning, specifically using the LCT dimension of Semantics, both semantic waves and the semantic plane, may create exciting and productive conversations with academic lecturers. Using two ‘vignettes’ drawn from English Studies and Political Studies, the chapter illustrates how teaching practice and curriculum design can be enhanced by using LCT in academic staff development work, and by extension in curriculum design, teaching and assessment practice.
- Full Text:
Characterisation of plasmodial transketolases and identification of potential inhibitors: an in silico study
- Boateng, Rita A, Tastan Bishop, Özlem, Musyoka, Thommas M
- Authors: Boateng, Rita A , Tastan Bishop, Özlem , Musyoka, Thommas M
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429372 , vital:72605 , xlink:href="https://doi.org/10.1186/s12936-020-03512-1"
- Description: Plasmodial transketolase (PTKT) enzyme is one of the novel pharmacological targets being explored as potential anti-malarial drug target due to its functional role and low sequence identity to the human enzyme. Despite this, features contributing to such have not been exploited for anti-malarial drug design. Additionally, there are no anti-malarial drugs targeting PTKTs whereas the broad activity of these inhibitors against PTKTs from other Plasmodium spp. is yet to be reported. This study characterises different PTKTs [Plasmodium falciparum (PfTKT), Plasmodium vivax (PvTKT), Plasmodium ovale (PoTKT), Plasmodium malariae (PmTKT) and Plasmodium knowlesi (PkTKT) and the human homolog (HsTKT)] to identify key sequence and structural based differences as well as the identification of selective potential inhibitors against PTKTs.
- Full Text:
- Authors: Boateng, Rita A , Tastan Bishop, Özlem , Musyoka, Thommas M
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429372 , vital:72605 , xlink:href="https://doi.org/10.1186/s12936-020-03512-1"
- Description: Plasmodial transketolase (PTKT) enzyme is one of the novel pharmacological targets being explored as potential anti-malarial drug target due to its functional role and low sequence identity to the human enzyme. Despite this, features contributing to such have not been exploited for anti-malarial drug design. Additionally, there are no anti-malarial drugs targeting PTKTs whereas the broad activity of these inhibitors against PTKTs from other Plasmodium spp. is yet to be reported. This study characterises different PTKTs [Plasmodium falciparum (PfTKT), Plasmodium vivax (PvTKT), Plasmodium ovale (PoTKT), Plasmodium malariae (PmTKT) and Plasmodium knowlesi (PkTKT) and the human homolog (HsTKT)] to identify key sequence and structural based differences as well as the identification of selective potential inhibitors against PTKTs.
- Full Text:
Charlie Hebdo as a critical event in a secondary school: Muslim students’ complex positioning in relation to the attack
- Tize, Carola, Berckmoes, Lidewyde, de Jong, Joop, Reis, Ria
- Authors: Tize, Carola , Berckmoes, Lidewyde , de Jong, Joop , Reis, Ria
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156400 , vital:39986 , DOI: 10.1177/1363461520903814
- Description: This paper examines responses to the 2015 terror attack on Charlie Hebdo, a French satirical magazine, amongst students in a secondary school in Berlin-Neukölln, Germany. The Charlie Hebdo attack occurred in the final weeks of a 19-month ethnographic study in the community. By analyzing the responses in the school to this critical event, we identify what is at stake for Muslim students.
- Full Text:
- Authors: Tize, Carola , Berckmoes, Lidewyde , de Jong, Joop , Reis, Ria
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156400 , vital:39986 , DOI: 10.1177/1363461520903814
- Description: This paper examines responses to the 2015 terror attack on Charlie Hebdo, a French satirical magazine, amongst students in a secondary school in Berlin-Neukölln, Germany. The Charlie Hebdo attack occurred in the final weeks of a 19-month ethnographic study in the community. By analyzing the responses in the school to this critical event, we identify what is at stake for Muslim students.
- Full Text:
Chasing Eden: Margaret Atwood’s MaddAddam trilogy and the value of reading in a technological age
- Authors: Bosman, Zoë June
- Date: 2020
- Subjects: Atwood, Margaret, 1939- MaddAddam trilogy , Speculative fiction -- History and criticism , Capitalism in literature , Dystopias in literature , Science fiction -- History and criticism , Technology in literature
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/145796 , vital:38467
- Description: This thesis is focussed on Margaret Atwood’s MaddAddam trilogy: Oryx and Crake (2003) The Year of the Flood (2009) and MaddAddam (2013). Detailing Atwood’s own specifications as to why these texts should be categorised as works of speculative fiction, the thesis examines how this literary genre, and Atwood’s MaddAddam trilogy in particular, is uniquely capable of encouraging readers to interrogate critically the socio-economic, environmental, and ethical problems to which she, and the contemporary reader, bear witness in the present technological age. With reference to Atwood’s essays and critical writings, Darko Suvin’s Metamorphoses of Science Fiction, and Wolfgang Iser’s The Act of Reading, this project explores the value of reading speculative fiction and details how Atwood has constructed the fictional, yet plausible, possible future world of her trilogy by extrapolating our current scientific capabilities, environmental challenges, and political configurations to their logical conclusions. It explores the close relationship that exists between the near-future world of Atwood’s texts and the contemporary context from which she has drawn her subject matter, and argues that the trilogy demonstrates graphically the long-term consequences of capitalism, sustainability, and the doctrine of human exceptionalism, which this project, following Yuval Harari, defines as orthodox guiding narratives: fictions that humanity has created, and which structure our perception of reality and guide our behaviour. The project maintains that Atwood’s trilogy presents the reader with a hypothetical future that looks towards and beyond the end of contemporary technological society in order to urge her reader to imagine, and actualize, alternatives to the scenarios that these texts depict. The most significant question Atwood’s texts ask is whether contemporary technological society is willing and able to transform in order to avert the ecological apocalypse that is the logical conclusion to the Anthropocene?
- Full Text:
- Authors: Bosman, Zoë June
- Date: 2020
- Subjects: Atwood, Margaret, 1939- MaddAddam trilogy , Speculative fiction -- History and criticism , Capitalism in literature , Dystopias in literature , Science fiction -- History and criticism , Technology in literature
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/145796 , vital:38467
- Description: This thesis is focussed on Margaret Atwood’s MaddAddam trilogy: Oryx and Crake (2003) The Year of the Flood (2009) and MaddAddam (2013). Detailing Atwood’s own specifications as to why these texts should be categorised as works of speculative fiction, the thesis examines how this literary genre, and Atwood’s MaddAddam trilogy in particular, is uniquely capable of encouraging readers to interrogate critically the socio-economic, environmental, and ethical problems to which she, and the contemporary reader, bear witness in the present technological age. With reference to Atwood’s essays and critical writings, Darko Suvin’s Metamorphoses of Science Fiction, and Wolfgang Iser’s The Act of Reading, this project explores the value of reading speculative fiction and details how Atwood has constructed the fictional, yet plausible, possible future world of her trilogy by extrapolating our current scientific capabilities, environmental challenges, and political configurations to their logical conclusions. It explores the close relationship that exists between the near-future world of Atwood’s texts and the contemporary context from which she has drawn her subject matter, and argues that the trilogy demonstrates graphically the long-term consequences of capitalism, sustainability, and the doctrine of human exceptionalism, which this project, following Yuval Harari, defines as orthodox guiding narratives: fictions that humanity has created, and which structure our perception of reality and guide our behaviour. The project maintains that Atwood’s trilogy presents the reader with a hypothetical future that looks towards and beyond the end of contemporary technological society in order to urge her reader to imagine, and actualize, alternatives to the scenarios that these texts depict. The most significant question Atwood’s texts ask is whether contemporary technological society is willing and able to transform in order to avert the ecological apocalypse that is the logical conclusion to the Anthropocene?
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