Host stage preference and performance of Dolichogenidea gelechiidivoris (Hymenoptera: Braconidae), a candidate for classical biological control of Tuta absoluta in Africa
- Aigbedion-Atalor, Pascal O, Mohamed, Samira A, Hill, Martin P, Zalucki, Myron P, Azrag, Abdelmutalab G A, Srinivasan, Ramasamy, Ekesi, Sunday
- Authors: Aigbedion-Atalor, Pascal O , Mohamed, Samira A , Hill, Martin P , Zalucki, Myron P , Azrag, Abdelmutalab G A , Srinivasan, Ramasamy , Ekesi, Sunday
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/423516 , vital:72068 , xlink:href="https://doi.org/10.1016/j.biocontrol.2020.104215"
- Description: Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae) is native to South America but has invaded the Afro-Eurasian supercontinent where it is currently the most devastating invasive arthropod pest of tomato. As a part of the first classical biological control programme against T. absoluta in Africa, a larval parasitoid, Dolichogenidea gelechiidivoris Marsh. (Syn.: Apanteles gelechiidivoris Marsh) (Hymenoptera: Braconidae), of T. absoluta was imported from Peru into the quarantine facility of the International Centre of Insect Physiology and Ecology, Kenya. We report on the host larval preference of D. gelechiidivoris and the host suitability, and the parasitoid’s reproductive strategy, including lifetime fecundity and egg maturation dynamics. Dolichogenidea gelechiidivoris females preferentially oviposited in early (1st and 2nd) larval instars of T. absoluta but parasitized and completed development in all four instars of the host. Host instar did not affect D. gelechiidivoris sex-ratio but females reared on the first instar had significantly fewer eggs than when reared in late larval instars (3rd and 4th). Females of the parasitoid emerged with a high mature egg load which peaked 2 d post eclosion. The females of D. gelechiidivoris survived 8.51 ± 0.65 d and produced 103 ± 8 offspring per female at 26 ± 4 °C (range: 24 to 29 °C) and 50–70% relative humidity (RH) with males present and fed honey-water (80% honey). Increasing maternal age decreased the proportion of female offspring. Under the aforementioned laboratory conditions, the Gross and Net reproductive rates were 72 and 39.5 respectively, while the mean generation time was 20 d. The potential intrinsic rate of natural increase was 0.18. This study shows that D. gelechiidivoris is a potential biological control agent of T. absoluta and should be considered for release in Kenya and across Africa following host specificity testing and risk assessments.
- Full Text:
- Date Issued: 2020
- Authors: Aigbedion-Atalor, Pascal O , Mohamed, Samira A , Hill, Martin P , Zalucki, Myron P , Azrag, Abdelmutalab G A , Srinivasan, Ramasamy , Ekesi, Sunday
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/423516 , vital:72068 , xlink:href="https://doi.org/10.1016/j.biocontrol.2020.104215"
- Description: Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae) is native to South America but has invaded the Afro-Eurasian supercontinent where it is currently the most devastating invasive arthropod pest of tomato. As a part of the first classical biological control programme against T. absoluta in Africa, a larval parasitoid, Dolichogenidea gelechiidivoris Marsh. (Syn.: Apanteles gelechiidivoris Marsh) (Hymenoptera: Braconidae), of T. absoluta was imported from Peru into the quarantine facility of the International Centre of Insect Physiology and Ecology, Kenya. We report on the host larval preference of D. gelechiidivoris and the host suitability, and the parasitoid’s reproductive strategy, including lifetime fecundity and egg maturation dynamics. Dolichogenidea gelechiidivoris females preferentially oviposited in early (1st and 2nd) larval instars of T. absoluta but parasitized and completed development in all four instars of the host. Host instar did not affect D. gelechiidivoris sex-ratio but females reared on the first instar had significantly fewer eggs than when reared in late larval instars (3rd and 4th). Females of the parasitoid emerged with a high mature egg load which peaked 2 d post eclosion. The females of D. gelechiidivoris survived 8.51 ± 0.65 d and produced 103 ± 8 offspring per female at 26 ± 4 °C (range: 24 to 29 °C) and 50–70% relative humidity (RH) with males present and fed honey-water (80% honey). Increasing maternal age decreased the proportion of female offspring. Under the aforementioned laboratory conditions, the Gross and Net reproductive rates were 72 and 39.5 respectively, while the mean generation time was 20 d. The potential intrinsic rate of natural increase was 0.18. This study shows that D. gelechiidivoris is a potential biological control agent of T. absoluta and should be considered for release in Kenya and across Africa following host specificity testing and risk assessments.
- Full Text:
- Date Issued: 2020
HSP90 interacts with the fibronectin N-terminal domains and increases matrix formation:
- Chakraborty, Abir, Boel, Natasha M-E, Edkins, Adrienne L
- Authors: Chakraborty, Abir , Boel, Natasha M-E , Edkins, Adrienne L
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165407 , vital:41241 , https://doi.org/10.3390/cells9020272
- Description: Heat shock protein 90 (HSP90) is an evolutionarily conserved chaperone protein that controls the function and stability of a wide range of cellular client proteins. Fibronectin (FN) is an extracellular client protein of HSP90, and exogenous HSP90 or inhibitors of HSP90 alter the morphology of the extracellular matrix. Here, we further characterized the HSP90 and FN interaction. FN bound to the M domain of HSP90 and interacted with both the open and closed HSP90 conformations; and the interaction was reduced in the presence of sodium molybdate. HSP90 interacted with the N-terminal regions of FN, which are known to be important for matrix assembly.
- Full Text:
- Date Issued: 2020
- Authors: Chakraborty, Abir , Boel, Natasha M-E , Edkins, Adrienne L
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165407 , vital:41241 , https://doi.org/10.3390/cells9020272
- Description: Heat shock protein 90 (HSP90) is an evolutionarily conserved chaperone protein that controls the function and stability of a wide range of cellular client proteins. Fibronectin (FN) is an extracellular client protein of HSP90, and exogenous HSP90 or inhibitors of HSP90 alter the morphology of the extracellular matrix. Here, we further characterized the HSP90 and FN interaction. FN bound to the M domain of HSP90 and interacted with both the open and closed HSP90 conformations; and the interaction was reduced in the presence of sodium molybdate. HSP90 interacted with the N-terminal regions of FN, which are known to be important for matrix assembly.
- Full Text:
- Date Issued: 2020
Hydrodynamical backflow in X-shaped radio galaxy PKS 2014− 55:
- Cotton, W D, Thorat, K, Condon, J J, Frank, B S, Józsa, G I G, White, S V, Deane, R, Oozeer, N, Atemkeng, Marcellin T, Bester, L, Fanaroff, B, Kupa, R S, Smirnov, Oleg M, Mauch, T, Krishnan, V, Camilo, F
- Authors: Cotton, W D , Thorat, K , Condon, J J , Frank, B S , Józsa, G I G , White, S V , Deane, R , Oozeer, N , Atemkeng, Marcellin T , Bester, L , Fanaroff, B , Kupa, R S , Smirnov, Oleg M , Mauch, T , Krishnan, V , Camilo, F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149913 , vital:38912 , https://0-doi.org.wam.seals.ac.za/10.1093/mnras/staa1240
- Description: We present MeerKAT 1.28 GHz total-intensity, polarization, and spectral-index images covering the giant (projected length l ≈ 1.57 Mpc) X-shaped radio source PKS 2014−55 with an unprecedented combination of brightness sensitivity and angular resolution. They show the clear ‘double boomerang’ morphology of hydrodynamical backflows from the straight main jets deflected by the large and oblique hot-gas halo of the host galaxy PGC 064440.
- Full Text:
- Date Issued: 2020
- Authors: Cotton, W D , Thorat, K , Condon, J J , Frank, B S , Józsa, G I G , White, S V , Deane, R , Oozeer, N , Atemkeng, Marcellin T , Bester, L , Fanaroff, B , Kupa, R S , Smirnov, Oleg M , Mauch, T , Krishnan, V , Camilo, F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149913 , vital:38912 , https://0-doi.org.wam.seals.ac.za/10.1093/mnras/staa1240
- Description: We present MeerKAT 1.28 GHz total-intensity, polarization, and spectral-index images covering the giant (projected length l ≈ 1.57 Mpc) X-shaped radio source PKS 2014−55 with an unprecedented combination of brightness sensitivity and angular resolution. They show the clear ‘double boomerang’ morphology of hydrodynamical backflows from the straight main jets deflected by the large and oblique hot-gas halo of the host galaxy PGC 064440.
- Full Text:
- Date Issued: 2020
Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches:
- Nyamai, Dorothy Wavinya, Tastan Bishop, Özlem
- Authors: Nyamai, Dorothy Wavinya , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149229 , vital:38817 , https://doi.org/10.3390/ijms21113803
- Description: Recently, there has been increased interest in aminoacyl tRNA synthetases (aaRSs) as potential malarial drug targets. These enzymes play a key role in protein translation by the addition of amino acids to their cognate tRNA. The aaRSs are present in all Plasmodium life cycle stages, and thus present an attractive malarial drug target. Prolyl tRNA synthetase is a class II aaRS that functions in charging tRNA with proline. Various inhibitors against Plasmodium falciparum ProRS (PfProRS) active site have been designed. However, none have gone through clinical trials as they have been found to be highly toxic to human cells. Recently, a possible allosteric site was reported in PfProRS with two possible allosteric modulators: glyburide and TCMDC-124506. In this study, we sought to identify novel selective inhibitors targeting PfProRS active site and possible novel allosteric modulators of this enzyme. To achieve this, virtual screening of South African natural compounds against PfProRS and the human homologue was carried out using AutoDock Vina. The modulation of protein motions by ligand binding was studied by molecular dynamics (MD) using the GROningen MAchine for Chemical Simulations (GROMACS) tool. To further analyse the protein global motions and energetic changes upon ligand binding, principal component analysis (PCA), and free energy landscape (FEL) calculations were performed.
- Full Text:
- Date Issued: 2020
- Authors: Nyamai, Dorothy Wavinya , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149229 , vital:38817 , https://doi.org/10.3390/ijms21113803
- Description: Recently, there has been increased interest in aminoacyl tRNA synthetases (aaRSs) as potential malarial drug targets. These enzymes play a key role in protein translation by the addition of amino acids to their cognate tRNA. The aaRSs are present in all Plasmodium life cycle stages, and thus present an attractive malarial drug target. Prolyl tRNA synthetase is a class II aaRS that functions in charging tRNA with proline. Various inhibitors against Plasmodium falciparum ProRS (PfProRS) active site have been designed. However, none have gone through clinical trials as they have been found to be highly toxic to human cells. Recently, a possible allosteric site was reported in PfProRS with two possible allosteric modulators: glyburide and TCMDC-124506. In this study, we sought to identify novel selective inhibitors targeting PfProRS active site and possible novel allosteric modulators of this enzyme. To achieve this, virtual screening of South African natural compounds against PfProRS and the human homologue was carried out using AutoDock Vina. The modulation of protein motions by ligand binding was studied by molecular dynamics (MD) using the GROningen MAchine for Chemical Simulations (GROMACS) tool. To further analyse the protein global motions and energetic changes upon ligand binding, principal component analysis (PCA), and free energy landscape (FEL) calculations were performed.
- Full Text:
- Date Issued: 2020
Impact of early pandemic stage mutations on molecular dynamics of SARS-CoV-2 Mpro:
- Amamuddy, Olivier S, Verkhivker, Gennady M, Tastan Bishop, Özlem
- Authors: Amamuddy, Olivier S , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162330 , vital:40835 , https://0-doi.org.wam.seals.ac.za/10.1021/acs.jcim.0c00634
- Description: A new coronavirus (SARS-CoV-2) is a global threat to world health and economy. Its dimeric main protease (Mpro), which is required for the proteolytic cleavage of viral precursor proteins, is a good candidate for drug development owing to its conservation and the absence of a human homolog. Improving our understanding of Mpro behavior can accelerate the discovery of effective therapies to reduce mortality. All-atom molecular dynamics (MD) simulations (100 ns) of 50 mutant Mpro dimers obtained from filtered sequences from the GISAID database were analyzed using root-mean-square deviation, root-mean-square fluctuation, Rg, averaged betweenness centrality, and geometry calculations.
- Full Text:
- Date Issued: 2020
- Authors: Amamuddy, Olivier S , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162330 , vital:40835 , https://0-doi.org.wam.seals.ac.za/10.1021/acs.jcim.0c00634
- Description: A new coronavirus (SARS-CoV-2) is a global threat to world health and economy. Its dimeric main protease (Mpro), which is required for the proteolytic cleavage of viral precursor proteins, is a good candidate for drug development owing to its conservation and the absence of a human homolog. Improving our understanding of Mpro behavior can accelerate the discovery of effective therapies to reduce mortality. All-atom molecular dynamics (MD) simulations (100 ns) of 50 mutant Mpro dimers obtained from filtered sequences from the GISAID database were analyzed using root-mean-square deviation, root-mean-square fluctuation, Rg, averaged betweenness centrality, and geometry calculations.
- Full Text:
- Date Issued: 2020
Impact of emerging mutations on the dynamic properties the SARS-CoV-2 main protease: an in silico investigation
- Amamuddy, Olivier S, Verkhivker, Gennady M, Tastan Bishop, Özlem
- Authors: Amamuddy, Olivier S , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/163035 , vital:41006 , doi: 10.1021/acs.jcim.0c00634
- Description: The new coronavirus (SARS-CoV-2) is a global threat to world health and its economy. Its main protease (Mpro), which functions as a dimer, cleaves viral precursor proteins in the process of viral maturation. It is a good candidate for drug development owing to its conservation and the absence of a human homolog. An improved understanding of the protein behaviour can accelerate the discovery of effective therapies in order to reduce mortality. 100 ns all-atom molecular dynamics simulations of 50 homology modelled mutant Mpro dimers were performed at pH 7 from filtered sequences obtained from the GISAID database. Protease dynamics were analysed using RMSD, RMSF, Rg, the averaged betweenness centrality and geometry calculations. Domains from each Mpro protomer were found to generally have independent motions, while the dimer-stabilising N-finger region was found to be flexible in most mutants.
- Full Text:
- Date Issued: 2020
- Authors: Amamuddy, Olivier S , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/163035 , vital:41006 , doi: 10.1021/acs.jcim.0c00634
- Description: The new coronavirus (SARS-CoV-2) is a global threat to world health and its economy. Its main protease (Mpro), which functions as a dimer, cleaves viral precursor proteins in the process of viral maturation. It is a good candidate for drug development owing to its conservation and the absence of a human homolog. An improved understanding of the protein behaviour can accelerate the discovery of effective therapies in order to reduce mortality. 100 ns all-atom molecular dynamics simulations of 50 homology modelled mutant Mpro dimers were performed at pH 7 from filtered sequences obtained from the GISAID database. Protease dynamics were analysed using RMSD, RMSF, Rg, the averaged betweenness centrality and geometry calculations. Domains from each Mpro protomer were found to generally have independent motions, while the dimer-stabilising N-finger region was found to be flexible in most mutants.
- Full Text:
- Date Issued: 2020
Impacts of a trophy hunting ban on private land conservation in South African biodiversity hotspots:
- Parker, Kim, de Vos, Alta, Clements, Hayley S, Biggs, Duan, Biggs, Reinette
- Authors: Parker, Kim , de Vos, Alta , Clements, Hayley S , Biggs, Duan , Biggs, Reinette
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158219 , vital:40163 , https://0-doi.org.wam.seals.ac.za/10.1111/csp2.214
- Description: Private land conservation areas (PLCAs) have become critical for achieving global conservation goals, but we lack understanding of how and when these areas respond to global pressures and opportunities. In southern Africa, where many PLCAs rely on trophy hunting as an income‐generating strategy, a potential ban on trophy hunting locally or abroad holds unknown consequences for the future conservation of these lands. In this study, we investigate the consequences of a potential trophy hunting ban in PLCAs in two biodiversity hotspots in South Africa's Eastern and Western Cape provinces. We used semistructured interviews with PLCA managers and owners to elicit perceived impacts of an internationally imposed trophy hunting ban on conservation activities in PLCAs, and to probe alternative viable land uses.
- Full Text:
- Date Issued: 2020
Impacts of a trophy hunting ban on private land conservation in South African biodiversity hotspots:
- Authors: Parker, Kim , de Vos, Alta , Clements, Hayley S , Biggs, Duan , Biggs, Reinette
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158219 , vital:40163 , https://0-doi.org.wam.seals.ac.za/10.1111/csp2.214
- Description: Private land conservation areas (PLCAs) have become critical for achieving global conservation goals, but we lack understanding of how and when these areas respond to global pressures and opportunities. In southern Africa, where many PLCAs rely on trophy hunting as an income‐generating strategy, a potential ban on trophy hunting locally or abroad holds unknown consequences for the future conservation of these lands. In this study, we investigate the consequences of a potential trophy hunting ban in PLCAs in two biodiversity hotspots in South Africa's Eastern and Western Cape provinces. We used semistructured interviews with PLCA managers and owners to elicit perceived impacts of an internationally imposed trophy hunting ban on conservation activities in PLCAs, and to probe alternative viable land uses.
- Full Text:
- Date Issued: 2020
Implantation, orientation and validation of a commercially produced heart-rate logger for use in a perciform teleost fish:
- Muller, Cuen, Childs, Amber-Robyn, Duncan, Murray I, Skeeles, Michael R, James, Nicola C, Van der Walt, Kerry-Ann, Winkler, Alexander C, Potts, Warren M
- Authors: Muller, Cuen , Childs, Amber-Robyn , Duncan, Murray I , Skeeles, Michael R , James, Nicola C , Van der Walt, Kerry-Ann , Winkler, Alexander C , Potts, Warren M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148494 , vital:38744 , doi.org.wam.seals.ac.za/10.1093/conphys/coaa035
- Description: Quantifying how the heart rate of ectothermic organisms responds to environmental conditions (e.g. water temperature) is important information to quantify their sensitivity to environmental change. Heart rate studies have typically been conducted in lab environments where fish are confined. However, commercially available implantable heart rate biologgers provide the opportunity to study free-swimming fish. Our study aimed to determine the applicability of an implantable device, typically used on fusiform-shaped fish (e.g. salmonids), for a perciform fish where morphology and anatomy prevent ventral incisions normally used on fusiform-shaped fish.
- Full Text:
- Date Issued: 2020
- Authors: Muller, Cuen , Childs, Amber-Robyn , Duncan, Murray I , Skeeles, Michael R , James, Nicola C , Van der Walt, Kerry-Ann , Winkler, Alexander C , Potts, Warren M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148494 , vital:38744 , doi.org.wam.seals.ac.za/10.1093/conphys/coaa035
- Description: Quantifying how the heart rate of ectothermic organisms responds to environmental conditions (e.g. water temperature) is important information to quantify their sensitivity to environmental change. Heart rate studies have typically been conducted in lab environments where fish are confined. However, commercially available implantable heart rate biologgers provide the opportunity to study free-swimming fish. Our study aimed to determine the applicability of an implantable device, typically used on fusiform-shaped fish (e.g. salmonids), for a perciform fish where morphology and anatomy prevent ventral incisions normally used on fusiform-shaped fish.
- Full Text:
- Date Issued: 2020
Implementation of access and benefit-sharing measures has consequences for classical biological control of weeds:
- Silvestri, Luciano, Sosa, Alejandro, Mc Kay, Fernando, Vitorino, Marcelo D, Hill, Martin P, Zachariades, Costas, Hight, Stephen, Weyl, Philip S R, Smith, David, Djeddour, Djamila, Mason, Peter G
- Authors: Silvestri, Luciano , Sosa, Alejandro , Mc Kay, Fernando , Vitorino, Marcelo D , Hill, Martin P , Zachariades, Costas , Hight, Stephen , Weyl, Philip S R , Smith, David , Djeddour, Djamila , Mason, Peter G
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/150285 , vital:38964 , https://link.springer.com/article/10.1007/s10526-019-09988-4
- Description: The Convention on Biological Diversity and the Nagoya Protocol establish that genetic resources shall be accessed only upon the existence of prior informed consent of the country that provides those resources and that benefits arising from their utilization shall be shared. Pursuant to both agreements several countries have adopted regulations on access and benefit-sharing. These regulations have created a challenging obstacle to classical biological control of weeds. This paper reviews the experiences of Argentina, Brazil, South Africa, the USA, Canada and CABI in implementing access and benefit-sharing regulations and the implications these measures have on the effective and efficient access, exchange and utilization of biological control agents.
- Full Text:
- Date Issued: 2020
- Authors: Silvestri, Luciano , Sosa, Alejandro , Mc Kay, Fernando , Vitorino, Marcelo D , Hill, Martin P , Zachariades, Costas , Hight, Stephen , Weyl, Philip S R , Smith, David , Djeddour, Djamila , Mason, Peter G
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/150285 , vital:38964 , https://link.springer.com/article/10.1007/s10526-019-09988-4
- Description: The Convention on Biological Diversity and the Nagoya Protocol establish that genetic resources shall be accessed only upon the existence of prior informed consent of the country that provides those resources and that benefits arising from their utilization shall be shared. Pursuant to both agreements several countries have adopted regulations on access and benefit-sharing. These regulations have created a challenging obstacle to classical biological control of weeds. This paper reviews the experiences of Argentina, Brazil, South Africa, the USA, Canada and CABI in implementing access and benefit-sharing regulations and the implications these measures have on the effective and efficient access, exchange and utilization of biological control agents.
- Full Text:
- Date Issued: 2020
Implementing prolonged exposure therapy for PTSD in a context of ongoing adversity: a clinical case study
- Booysen, Duane D, Kagee, Ashraf
- Authors: Booysen, Duane D , Kagee, Ashraf
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149275 , vital:38821 , https://0-doi.org.wam.seals.ac.za/10.1177/1534650120925918
- Description: Obstacles regarding the implementation of empirically supported treatments (ESTs) for mental disorders such as post-traumatic stress disorder (PTSD) still require further investigation. One notable obstacle is whether persons in low- and middle-income countries (LMICs) residing in a context of ongoing adversity would benefit from an EST for PTSD. We reflect on the utility of a brief prolonged exposure intervention at a primary care community-counseling center in South Africa. “Sam,” a 45-year-old, female was assessed at baseline, during treatment, postassessment, and at 3-month follow-up. At the beginning of treatment, Sam had a positive diagnosis for PTSD (PSSI-5 = 55, and cutoff is 23) and at the end of treatment (PSSI-5 = 17), and 3-month follow-up (PSSI-5 = 21), she had a negative diagnosis for PTSD. We reflect on the mediating effects that contextual factors such as gang violence had on the treatment process and the feasibility of implementing ESTs for PTSD in LMICs under conditions of ongoing adversity.
- Full Text:
- Date Issued: 2020
- Authors: Booysen, Duane D , Kagee, Ashraf
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149275 , vital:38821 , https://0-doi.org.wam.seals.ac.za/10.1177/1534650120925918
- Description: Obstacles regarding the implementation of empirically supported treatments (ESTs) for mental disorders such as post-traumatic stress disorder (PTSD) still require further investigation. One notable obstacle is whether persons in low- and middle-income countries (LMICs) residing in a context of ongoing adversity would benefit from an EST for PTSD. We reflect on the utility of a brief prolonged exposure intervention at a primary care community-counseling center in South Africa. “Sam,” a 45-year-old, female was assessed at baseline, during treatment, postassessment, and at 3-month follow-up. At the beginning of treatment, Sam had a positive diagnosis for PTSD (PSSI-5 = 55, and cutoff is 23) and at the end of treatment (PSSI-5 = 17), and 3-month follow-up (PSSI-5 = 21), she had a negative diagnosis for PTSD. We reflect on the mediating effects that contextual factors such as gang violence had on the treatment process and the feasibility of implementing ESTs for PTSD in LMICs under conditions of ongoing adversity.
- Full Text:
- Date Issued: 2020
Improved Stability of Rifampicin in the Presence of Gastric-Resistant Isoniazid Microspheres in Acidic Media
- Mwila, Chiluba, Walker, Roderick B
- Authors: Mwila, Chiluba , Walker, Roderick B
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/183210 , vital:43929 , xlink:href="https://doi.org/10.3390/pharmaceutics12030234"
- Description: The degradation of rifampicin (RIF) in an acidic medium to form 3-formyl rifamycin SV, a poorly absorbed compound, is accelerated in the presence of isoniazid, contributing to the poor bioavailability of rifampicin. This manuscript presents a novel approach in which isoniazid is formulated into gastric-resistant sustained-release microspheres and RIF into microporous floating sustained-release microspheres to reduce the potential for interaction between RIF and isoniazid (INH) in an acidic environment. Hydroxypropyl methylcellulose acetate succinate and Eudragit® L100 polymers were used for the manufacture of isoniazid-loaded gastric-resistant sustained-release microspheres using an o/o solvent emulsification evaporation approach. Microporous floating sustained-release microspheres for the delivery of rifampicin in the stomach were manufactured using emulsification and a diffusion/evaporation process. The design of experiments was used to evaluate the impact of input variables on predefined responses or quality attributes of the microspheres. The percent degradation of rifampicin following 12 h dissolution testing in 0.1 M HCl pH 1.2 in the presence of isoniazid gastric-resistant sustained-release microspheres was only 4.44%. These results indicate that the degradation of rifampicin in the presence of isoniazid in acidic media can be reduced by encapsulation of both active pharmaceutical ingredients to ensure release in different segments of the gastrointestinal tract, potentially improving the bioavailability of rifampicin.
- Full Text:
- Date Issued: 2020
- Authors: Mwila, Chiluba , Walker, Roderick B
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/183210 , vital:43929 , xlink:href="https://doi.org/10.3390/pharmaceutics12030234"
- Description: The degradation of rifampicin (RIF) in an acidic medium to form 3-formyl rifamycin SV, a poorly absorbed compound, is accelerated in the presence of isoniazid, contributing to the poor bioavailability of rifampicin. This manuscript presents a novel approach in which isoniazid is formulated into gastric-resistant sustained-release microspheres and RIF into microporous floating sustained-release microspheres to reduce the potential for interaction between RIF and isoniazid (INH) in an acidic environment. Hydroxypropyl methylcellulose acetate succinate and Eudragit® L100 polymers were used for the manufacture of isoniazid-loaded gastric-resistant sustained-release microspheres using an o/o solvent emulsification evaporation approach. Microporous floating sustained-release microspheres for the delivery of rifampicin in the stomach were manufactured using emulsification and a diffusion/evaporation process. The design of experiments was used to evaluate the impact of input variables on predefined responses or quality attributes of the microspheres. The percent degradation of rifampicin following 12 h dissolution testing in 0.1 M HCl pH 1.2 in the presence of isoniazid gastric-resistant sustained-release microspheres was only 4.44%. These results indicate that the degradation of rifampicin in the presence of isoniazid in acidic media can be reduced by encapsulation of both active pharmaceutical ingredients to ensure release in different segments of the gastrointestinal tract, potentially improving the bioavailability of rifampicin.
- Full Text:
- Date Issued: 2020
In vitro anti-cancer efficacy and phyto-chemical screening of solvent extracts of Kigelia africana (Lam.) Benth
- Mukavi, Justus W, Mayeku, Philip W, Nyaga, Justine M, Kituyi, Sarah N
- Authors: Mukavi, Justus W , Mayeku, Philip W , Nyaga, Justine M , Kituyi, Sarah N
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429439 , vital:72610 , xlink:href="https://www.cell.com/heliyon/pdf/S2405-8440(20)31325-6.pdf"
- Description: Kigelia africana is a medicinal plant growing naturally in many parts of Africa. In Kenya, a water concoction of the plant is used to treat breast and prostate cancers. Laboratory data on its anti-cancer activity and active principles is limited, hence no scientific rationale for its medicinal use. This study reports on in-vitro toxic activities of dichloromethane and methanol extracts of the plant against human breast cancer cells and phytochemical screening of the two extracts.
- Full Text:
- Date Issued: 2020
- Authors: Mukavi, Justus W , Mayeku, Philip W , Nyaga, Justine M , Kituyi, Sarah N
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429439 , vital:72610 , xlink:href="https://www.cell.com/heliyon/pdf/S2405-8440(20)31325-6.pdf"
- Description: Kigelia africana is a medicinal plant growing naturally in many parts of Africa. In Kenya, a water concoction of the plant is used to treat breast and prostate cancers. Laboratory data on its anti-cancer activity and active principles is limited, hence no scientific rationale for its medicinal use. This study reports on in-vitro toxic activities of dichloromethane and methanol extracts of the plant against human breast cancer cells and phytochemical screening of the two extracts.
- Full Text:
- Date Issued: 2020
In Vitro Release Testing (IVRT) of Topical Hydrocortisone Acetate Creams: a novel approach using positive and negative controls
- Mudyahoto, Nyengeterai Amanda, Rath, Seeprarani, Ramanah, Ashmita, Kanfer, Isadore
- Authors: Mudyahoto, Nyengeterai Amanda , Rath, Seeprarani , Ramanah, Ashmita , Kanfer, Isadore
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149849 , vital:38888 , dx.doi.org/10.14227/DT270120P6
- Description: The objective was to develop and validate an in vitro release testing (IVRT) method to assess the release of hydrocortisone acetate (HCA) from five topical formulations. A marketed generic cream containing 1% HCA was used as the reference product. Vertical diffusion cells (VDCs) were used to assess and compare the release rates of HCA from cream formulations containing 0.5%, 1%, and 1.5% HCA. The study describes a novel approach to test the discriminatory power by including both positive and negative controls to declare pharmaceutical equivalence or inequivalence. The validated method was found to be sensitive, linear, precise, reproducible, robust, and selective for the analysis of HCA from topical cream products. Equivalence or inequivalence was established based on SUPAC-SS acceptance criteria using a 90% CI with limits of 75–133.33%. The IVRT method was shown to have discriminatory ability to appropriately measure significant differences in drug release from various cream formulations. This approach also provides useful information for the future development of acceptable IVRT methods to assess topical dosage forms for local action containing different drugs.
- Full Text:
- Date Issued: 2020
- Authors: Mudyahoto, Nyengeterai Amanda , Rath, Seeprarani , Ramanah, Ashmita , Kanfer, Isadore
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149849 , vital:38888 , dx.doi.org/10.14227/DT270120P6
- Description: The objective was to develop and validate an in vitro release testing (IVRT) method to assess the release of hydrocortisone acetate (HCA) from five topical formulations. A marketed generic cream containing 1% HCA was used as the reference product. Vertical diffusion cells (VDCs) were used to assess and compare the release rates of HCA from cream formulations containing 0.5%, 1%, and 1.5% HCA. The study describes a novel approach to test the discriminatory power by including both positive and negative controls to declare pharmaceutical equivalence or inequivalence. The validated method was found to be sensitive, linear, precise, reproducible, robust, and selective for the analysis of HCA from topical cream products. Equivalence or inequivalence was established based on SUPAC-SS acceptance criteria using a 90% CI with limits of 75–133.33%. The IVRT method was shown to have discriminatory ability to appropriately measure significant differences in drug release from various cream formulations. This approach also provides useful information for the future development of acceptable IVRT methods to assess topical dosage forms for local action containing different drugs.
- Full Text:
- Date Issued: 2020
In Vitro Studies on Antioxidant and AntiParasitic Activities of Compounds Isolated from Rauvolfia caffra Sond
- Tlhapi, Dorcas B, Ramaite, Isaiah D, Anokwuru, Chinedu P, van Ree, Teunis, Hoppe, Heinrich C
- Authors: Tlhapi, Dorcas B , Ramaite, Isaiah D , Anokwuru, Chinedu P , van Ree, Teunis , Hoppe, Heinrich C
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425993 , vital:72305 , xlink:href="https://doi.org/10.3390/molecules25173781"
- Description: As part of an ongoing study of natural products from local medicinal plants, the methanol extract of stem bark of Rauvolfia caffra Sond was investigated for biological activity. Column chromatography and preparative thin-layer chromatography were used to isolate lupeol (1), raucaffricine (2), N-methylsarpagine (3), and spegatrine (4). The crude extract, fractions and isolated compounds were tested for anti-oxidant, antitrypanosomal and anti-proliferation activities. Two fractions displayed high DPPH (2,2-diphenyl-1-picrylhydrazyl) free radical scavenging activity and reducing power with IC50 (The half maximal inhibitory concentration) and IC0.5 values of 0.022 ± 0.003 mg/mL and 0.036 ± 0.007 mg/mL, and 0.518 ± 0.044 mg/mL and 1.076 ± 0.136 mg/mL, respectively. Spegatrine (4) was identified as the main antioxidant compound in R. caffra with IC50 and IC0.5 values of 0.119 ± 0.067 mg/mL and 0.712 ± 0 mg/mL, respectively. One fraction displayed high antitrypanosomal activity with an IC50 value of 18.50 μg/mL. However, the major constituent of this fraction, raucaffricine (2), was not active. The crude extract, fractions and pure compounds did not display any cytotoxic effect at a concentration of 50 μg/mL against HeLa cells. This study shows directions for further in vitro studies on the antioxidant and antitrypanosomal activities of Rauvolfia caffra Sond.
- Full Text:
- Date Issued: 2020
- Authors: Tlhapi, Dorcas B , Ramaite, Isaiah D , Anokwuru, Chinedu P , van Ree, Teunis , Hoppe, Heinrich C
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425993 , vital:72305 , xlink:href="https://doi.org/10.3390/molecules25173781"
- Description: As part of an ongoing study of natural products from local medicinal plants, the methanol extract of stem bark of Rauvolfia caffra Sond was investigated for biological activity. Column chromatography and preparative thin-layer chromatography were used to isolate lupeol (1), raucaffricine (2), N-methylsarpagine (3), and spegatrine (4). The crude extract, fractions and isolated compounds were tested for anti-oxidant, antitrypanosomal and anti-proliferation activities. Two fractions displayed high DPPH (2,2-diphenyl-1-picrylhydrazyl) free radical scavenging activity and reducing power with IC50 (The half maximal inhibitory concentration) and IC0.5 values of 0.022 ± 0.003 mg/mL and 0.036 ± 0.007 mg/mL, and 0.518 ± 0.044 mg/mL and 1.076 ± 0.136 mg/mL, respectively. Spegatrine (4) was identified as the main antioxidant compound in R. caffra with IC50 and IC0.5 values of 0.119 ± 0.067 mg/mL and 0.712 ± 0 mg/mL, respectively. One fraction displayed high antitrypanosomal activity with an IC50 value of 18.50 μg/mL. However, the major constituent of this fraction, raucaffricine (2), was not active. The crude extract, fractions and pure compounds did not display any cytotoxic effect at a concentration of 50 μg/mL against HeLa cells. This study shows directions for further in vitro studies on the antioxidant and antitrypanosomal activities of Rauvolfia caffra Sond.
- Full Text:
- Date Issued: 2020
Incorporating geomorphic knowledge in the management of wetlands in Africa’s drylands: a rapid assessment of the Kafue Wetland
- Lidzhegu, Z, Ellery, William F N, Mantel, Sukhmani
- Authors: Lidzhegu, Z , Ellery, William F N , Mantel, Sukhmani
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/157108 , vital:40087 , https://doi.org/10.1007/s13157-019-01172-9
- Description: Limited knowledge of wetland geomorphic processes often results in poor wetland management. This study aims to illustrate the importance of incorporating geomorphic knowledge of wetland origin in their management. The geomorphic origin and dynamics of the Kafue wetland were determined from the analysis of remotely sensed and geological data. The wetland is a remnant of a paleo-lake that was captured by the tributary of the middle Zambezi River. At the point of capture, resistant Muva Group metavolcanic rocks dominate narrow valleys characterised by straight channels. The resistant lithology prevents the lower Kafue River to cut into the wetland thus maintaining wetland conditions upstream. Sedimentation regime through overbank and bed deposits shaped the wetland’s structure, ecological diversity, and hydrological functioning. The operation of the Itezhi-tezhi dam has negatively impacted the wetland’s hydrological and sedimentological regime. The dam starves the system of sediment needed for promoting levee and channel bed aggradation. Regulated discharge with reduced sediment load can lead to channel incision and therefore reduce flood frequency, which may ultimately lead to wetland desiccation.
- Full Text:
- Date Issued: 2020
- Authors: Lidzhegu, Z , Ellery, William F N , Mantel, Sukhmani
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/157108 , vital:40087 , https://doi.org/10.1007/s13157-019-01172-9
- Description: Limited knowledge of wetland geomorphic processes often results in poor wetland management. This study aims to illustrate the importance of incorporating geomorphic knowledge of wetland origin in their management. The geomorphic origin and dynamics of the Kafue wetland were determined from the analysis of remotely sensed and geological data. The wetland is a remnant of a paleo-lake that was captured by the tributary of the middle Zambezi River. At the point of capture, resistant Muva Group metavolcanic rocks dominate narrow valleys characterised by straight channels. The resistant lithology prevents the lower Kafue River to cut into the wetland thus maintaining wetland conditions upstream. Sedimentation regime through overbank and bed deposits shaped the wetland’s structure, ecological diversity, and hydrological functioning. The operation of the Itezhi-tezhi dam has negatively impacted the wetland’s hydrological and sedimentological regime. The dam starves the system of sediment needed for promoting levee and channel bed aggradation. Regulated discharge with reduced sediment load can lead to channel incision and therefore reduce flood frequency, which may ultimately lead to wetland desiccation.
- Full Text:
- Date Issued: 2020
Increasing temperatures increase the risk of reproductive failure in a near threatened alpine groundnesting bird, the Cape Rockjumper Chaetops frenatus:
- Oswald, Krista N, Diener, Elizabeth F, Diener, John P, Cunningham, Susan J, Smit, Ben, Lee, Alan T K
- Authors: Oswald, Krista N , Diener, Elizabeth F , Diener, John P , Cunningham, Susan J , Smit, Ben , Lee, Alan T K
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149324 , vital:38825 , https://0-doi.org.wam.seals.ac.za/10.1111/ibi.12846
- Description: A major cause of reproductive failure in birds is nest predation. Predation risk depends on predator type, as predators vary in their ecology and sensory modalities (e.g. visual vs. olfactory). Snakes (generally olfactory predators) are a major nest predator for small birds, with predation strongly associated with higher temperatures. We investigated nest survival in a ground‐nesting alpine species, the Cape Rockjumper Chaetops frenatus , endemic to alpine fynbos in southwestern South Africa. We collected 3 years of nest data, testing whether nest survival was related to (1) habitat stage (early post‐fire vs. late post‐fire habitat, ≤ 3 and > 3 years since fire respectively), (2) nest concealment and (3) temperature. We found that nests had better survival at lower temperatures, with snake predation (our main source of predation) increasing in higher temperatures.
- Full Text:
- Date Issued: 2020
- Authors: Oswald, Krista N , Diener, Elizabeth F , Diener, John P , Cunningham, Susan J , Smit, Ben , Lee, Alan T K
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149324 , vital:38825 , https://0-doi.org.wam.seals.ac.za/10.1111/ibi.12846
- Description: A major cause of reproductive failure in birds is nest predation. Predation risk depends on predator type, as predators vary in their ecology and sensory modalities (e.g. visual vs. olfactory). Snakes (generally olfactory predators) are a major nest predator for small birds, with predation strongly associated with higher temperatures. We investigated nest survival in a ground‐nesting alpine species, the Cape Rockjumper Chaetops frenatus , endemic to alpine fynbos in southwestern South Africa. We collected 3 years of nest data, testing whether nest survival was related to (1) habitat stage (early post‐fire vs. late post‐fire habitat, ≤ 3 and > 3 years since fire respectively), (2) nest concealment and (3) temperature. We found that nests had better survival at lower temperatures, with snake predation (our main source of predation) increasing in higher temperatures.
- Full Text:
- Date Issued: 2020
Influence of intra-and interspecific variation in predator–prey body size ratios on trophic interaction strengths:
- Cuthbert, Ross N, Wasserman, Ryan J, Dalu, Tatenda, Kaiser, Horst, Weyl, Olaf L F, Dick, Jaimie T A, Sentis, Arnaud, McCoy, Michael W, Alexander, Mhairi E
- Authors: Cuthbert, Ross N , Wasserman, Ryan J , Dalu, Tatenda , Kaiser, Horst , Weyl, Olaf L F , Dick, Jaimie T A , Sentis, Arnaud , McCoy, Michael W , Alexander, Mhairi E
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149358 , vital:38839 , https://0-doi.org.wam.seals.ac.za/10.1002/ece3.6332
- Description: Predation is a pervasive force that structures food webs and directly influences ecosystem functioning. The relative body sizes of predators and prey may be an important determinant of interaction strengths. However, studies quantifying the combined influence of intra‐ and interspecific variation in predator–prey body size ratios are lacking. We use a comparative functional response approach to examine interaction strengths between three size classes of invasive bluegill and largemouth bass toward three scaled size classes of their tilapia prey. We then quantify the influence of intra‐ and interspecific predator–prey body mass ratios on the scaling of attack rates and handling times.
- Full Text:
- Date Issued: 2020
- Authors: Cuthbert, Ross N , Wasserman, Ryan J , Dalu, Tatenda , Kaiser, Horst , Weyl, Olaf L F , Dick, Jaimie T A , Sentis, Arnaud , McCoy, Michael W , Alexander, Mhairi E
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149358 , vital:38839 , https://0-doi.org.wam.seals.ac.za/10.1002/ece3.6332
- Description: Predation is a pervasive force that structures food webs and directly influences ecosystem functioning. The relative body sizes of predators and prey may be an important determinant of interaction strengths. However, studies quantifying the combined influence of intra‐ and interspecific variation in predator–prey body size ratios are lacking. We use a comparative functional response approach to examine interaction strengths between three size classes of invasive bluegill and largemouth bass toward three scaled size classes of their tilapia prey. We then quantify the influence of intra‐ and interspecific predator–prey body mass ratios on the scaling of attack rates and handling times.
- Full Text:
- Date Issued: 2020
Insect herbivores associated with Lycium ferocissimum (Solanaceae) in South Africa and their potential as biological control agents in Australia
- Chari, Lenin D, Mauda, EV, Martin, Grant D, Raghu, S
- Authors: Chari, Lenin D , Mauda, EV , Martin, Grant D , Raghu, S
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/407035 , vital:70331 , xlink:href="https://hdl.handle.net/10520/EJC-203b8dbc7b"
- Description: Lycium ferocissimum Miers (Solanaceae) is an indigenous shrub in South Africa but has become invasive in several countries including Australia, where chemical and mechanical control methods have proved costly and unsustainable. In Australia, biological control is being considered as a management option, but the herbivorous insects associated with the plant in its native range are not well known. The aim of this study was to survey the phytophagous insects associated with L. ferocissimum in South Africa and prioritise promising biological control agents. In South Africa, the plant occurs in two geographically distinct areas, the Eastern and Western Cape provinces. Surveys for phytophagous insects on L. ferocissimum were carried out repeatedly over a two-year period in these two regions. The number of insect species found in the Eastern Cape Province (55) was higher than that in the WesternCapeProvince (41), but insect diversity based on Shannon indices was highest in the Western Cape Province. Indicator species analysis revealed eight insect herbivore species driving the differences in the herbivore communities between the two provinces. Based on insect distribution, abundance, feeding preference and available literature, three species were prioritised as potential biological control agents. These include the leaf-chewing beetles Cassida distinguenda Spaeth (Chrysomelidae) and Cleta eckloni Mulsant (Coccinellidae) and the leaf-mining weevil Neoplatygaster serietuberculata Gyllenhal (Curculionidae).
- Full Text:
- Date Issued: 2020
- Authors: Chari, Lenin D , Mauda, EV , Martin, Grant D , Raghu, S
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/407035 , vital:70331 , xlink:href="https://hdl.handle.net/10520/EJC-203b8dbc7b"
- Description: Lycium ferocissimum Miers (Solanaceae) is an indigenous shrub in South Africa but has become invasive in several countries including Australia, where chemical and mechanical control methods have proved costly and unsustainable. In Australia, biological control is being considered as a management option, but the herbivorous insects associated with the plant in its native range are not well known. The aim of this study was to survey the phytophagous insects associated with L. ferocissimum in South Africa and prioritise promising biological control agents. In South Africa, the plant occurs in two geographically distinct areas, the Eastern and Western Cape provinces. Surveys for phytophagous insects on L. ferocissimum were carried out repeatedly over a two-year period in these two regions. The number of insect species found in the Eastern Cape Province (55) was higher than that in the WesternCapeProvince (41), but insect diversity based on Shannon indices was highest in the Western Cape Province. Indicator species analysis revealed eight insect herbivore species driving the differences in the herbivore communities between the two provinces. Based on insect distribution, abundance, feeding preference and available literature, three species were prioritised as potential biological control agents. These include the leaf-chewing beetles Cassida distinguenda Spaeth (Chrysomelidae) and Cleta eckloni Mulsant (Coccinellidae) and the leaf-mining weevil Neoplatygaster serietuberculata Gyllenhal (Curculionidae).
- Full Text:
- Date Issued: 2020
Integrated computational approaches and tools for allosteric drug discovery:
- Amamuddy, Olivier S, Veldman, Wade, Manyumwa, Colleen, Khairallah, Afrah, Agajanian, Steve, Oluyemi, Odeyemi, Verkhivker, Gennady M, Tastan Bishop, Özlem
- Authors: Amamuddy, Olivier S , Veldman, Wade , Manyumwa, Colleen , Khairallah, Afrah , Agajanian, Steve , Oluyemi, Odeyemi , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/163012 , vital:41004 , https://doi.org/10.3390/ijms21030847
- Description: Understanding molecular mechanisms underlying the complexity of allosteric regulation in proteins has attracted considerable attention in drug discovery due to the benefits and versatility of allosteric modulators in providing desirable selectivity against protein targets while minimizing toxicity and other side effects. The proliferation of novel computational approaches for predicting ligand–protein interactions and binding using dynamic and network-centric perspectives has led to new insights into allosteric mechanisms and facilitated computer-based discovery of allosteric drugs. Although no absolute method of experimental and in silico allosteric drug/site discovery exists, current methods are still being improved. As such, the critical analysis and integration of established approaches into robust, reproducible, and customizable computational pipelines with experimental feedback could make allosteric drug discovery more efficient and reliable. In this article, we review computational approaches for allosteric drug discovery and discuss how these tools can be utilized to develop consensus workflows for in silico identification of allosteric sites and modulators with some applications to pathogen resistance and precision medicine. The emerging realization that allosteric modulators can exploit distinct regulatory mechanisms and can provide access to targeted modulation of protein activities could open opportunities for probing biological processes and in silico design of drug combinations with improved therapeutic indices and a broad range of activities.
- Full Text:
- Date Issued: 2020
- Authors: Amamuddy, Olivier S , Veldman, Wade , Manyumwa, Colleen , Khairallah, Afrah , Agajanian, Steve , Oluyemi, Odeyemi , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/163012 , vital:41004 , https://doi.org/10.3390/ijms21030847
- Description: Understanding molecular mechanisms underlying the complexity of allosteric regulation in proteins has attracted considerable attention in drug discovery due to the benefits and versatility of allosteric modulators in providing desirable selectivity against protein targets while minimizing toxicity and other side effects. The proliferation of novel computational approaches for predicting ligand–protein interactions and binding using dynamic and network-centric perspectives has led to new insights into allosteric mechanisms and facilitated computer-based discovery of allosteric drugs. Although no absolute method of experimental and in silico allosteric drug/site discovery exists, current methods are still being improved. As such, the critical analysis and integration of established approaches into robust, reproducible, and customizable computational pipelines with experimental feedback could make allosteric drug discovery more efficient and reliable. In this article, we review computational approaches for allosteric drug discovery and discuss how these tools can be utilized to develop consensus workflows for in silico identification of allosteric sites and modulators with some applications to pathogen resistance and precision medicine. The emerging realization that allosteric modulators can exploit distinct regulatory mechanisms and can provide access to targeted modulation of protein activities could open opportunities for probing biological processes and in silico design of drug combinations with improved therapeutic indices and a broad range of activities.
- Full Text:
- Date Issued: 2020
Integrated landscape change analysis of protected areas and their surrounding landscapes: application in the Brazilian Cerrado
- Bellón, Beatriz, Blanco, Julien, de Vos, Alta, de Oliviera Roque, Fabio, Pays, Olivier, Renaud, Pierre-Cyril
- Authors: Bellón, Beatriz , Blanco, Julien , de Vos, Alta , de Oliviera Roque, Fabio , Pays, Olivier , Renaud, Pierre-Cyril
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148681 , vital:38763 , https://doi.org/10.3390/rs12091413
- Description: Remote sensing tools have been long used to monitor landscape dynamics inside and around protected areas. Hereto, scientists have largely relied on land use and land cover (LULC) data to derive indicators for monitoring these dynamics, but these metrics do not capture changes in the state of vegetation surfaces that may compromise the ecological integrity of conservation areas’ landscapes. Here, we introduce a methodology that combines LULC change estimates with three Normalized Difference Vegetation Index-based proxy indicators of vegetation productivity, phenology, and structural change. We illustrate the utility of this methodology through a regional and local analysis of the landscape dynamics in the Cerrado Biome in Brazil in 2001 and 2016. Despite relatively little natural vegetation loss inside core protected areas and their legal buffer zones, the different indicators revealed significant LULC conversions from natural vegetation to farming land, general productivity loss, homogenization of natural forests, significant agricultural expansion, and a general increase in productivity. These results suggest an overall degradation of habitats and intensification of land use in the studied conservation area network, highlighting serious conservation inefficiencies in this region and stressing the importance of integrated landscape change analyses to provide complementary indicators of ecologically-relevant dynamics in these key conservation areas.
- Full Text:
- Date Issued: 2020
- Authors: Bellón, Beatriz , Blanco, Julien , de Vos, Alta , de Oliviera Roque, Fabio , Pays, Olivier , Renaud, Pierre-Cyril
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148681 , vital:38763 , https://doi.org/10.3390/rs12091413
- Description: Remote sensing tools have been long used to monitor landscape dynamics inside and around protected areas. Hereto, scientists have largely relied on land use and land cover (LULC) data to derive indicators for monitoring these dynamics, but these metrics do not capture changes in the state of vegetation surfaces that may compromise the ecological integrity of conservation areas’ landscapes. Here, we introduce a methodology that combines LULC change estimates with three Normalized Difference Vegetation Index-based proxy indicators of vegetation productivity, phenology, and structural change. We illustrate the utility of this methodology through a regional and local analysis of the landscape dynamics in the Cerrado Biome in Brazil in 2001 and 2016. Despite relatively little natural vegetation loss inside core protected areas and their legal buffer zones, the different indicators revealed significant LULC conversions from natural vegetation to farming land, general productivity loss, homogenization of natural forests, significant agricultural expansion, and a general increase in productivity. These results suggest an overall degradation of habitats and intensification of land use in the studied conservation area network, highlighting serious conservation inefficiencies in this region and stressing the importance of integrated landscape change analyses to provide complementary indicators of ecologically-relevant dynamics in these key conservation areas.
- Full Text:
- Date Issued: 2020