A Change Project story: learning and caring for South Africa’s rivers
- Authors: Chetty, Preven
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/391060 , vital:68613 , xlink:href="https://eeasa.org.za/wp-content/uploads/2023/02/Final-EEASA-Bulletin-20212022-Final.pdf"
- Description: Water quality and scarcity is a major concern in Southern Africa and globally especially as the threat of climate change looms even closer. The current drought in South Africa and worsening rainfall has exposed the brittle nature of this country’s resilience to water shortages. Compounded to this is the fact that most rivers in South Africa are not adequately cared for and are under tremendous strain. Everyone who depends on these rivers whether directly or indirectly will soon be entering a new era where water will no longer be a ubiquitous commodity.
- Full Text:
- Date Issued: 2022
- Authors: Chetty, Preven
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/391060 , vital:68613 , xlink:href="https://eeasa.org.za/wp-content/uploads/2023/02/Final-EEASA-Bulletin-20212022-Final.pdf"
- Description: Water quality and scarcity is a major concern in Southern Africa and globally especially as the threat of climate change looms even closer. The current drought in South Africa and worsening rainfall has exposed the brittle nature of this country’s resilience to water shortages. Compounded to this is the fact that most rivers in South Africa are not adequately cared for and are under tremendous strain. Everyone who depends on these rivers whether directly or indirectly will soon be entering a new era where water will no longer be a ubiquitous commodity.
- Full Text:
- Date Issued: 2022
Characterising the shared genetic influences between schizophrenia and subcortical brain regions
- Wooton, Olivia, Campbell, Megan M, Jahanshad, Neda, Thompson, Paul, Stein, Dan J, Dalvie, Shareefa
- Authors: Wooton, Olivia , Campbell, Megan M , Jahanshad, Neda , Thompson, Paul , Stein, Dan J , Dalvie, Shareefa
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302450 , vital:58197 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.533"
- Description: Background: Abnormalities in brain structural volumes are well established in schizophrenia (SZ) and have been proposed as an endophenotype for the disorder. Despite increasing interest in the genetic relationship between brain structural volumes and SZ, our knowledge of the genetic overlap between the phenotypes is limited. This study aims to extend our current understanding of the shared genetic influences between SZ and subcortical brain volumes using data from the latest genome-wide association studies for the respective phenotypes (GWAS) and novel statistical approaches. Additionally, we will explore whether the association between schizophrenia and abnormal regional brain volumes is causal in nature. Methods: Summary statistics were obtained from the largest Psychiatric Genomic Consortium (PGC)-SZ GWAS (Ncase = 69,369, Ncontrol = 236,642) and the CHARGEENIGMA-UKBB GWAS of volumetric measures for eight subcortical brain regions (the nucleus accumbens, amygdala, brainstem, caudate nucleus, hippocampus, globus pallidus, putamen, and thalamus), and total intracranial volume (N = 30,983 - 40,380). Single nucleotide polymorphism (SNP) effect concordance analysis (SECA) was used to assess pleiotropy and concordance. Genetic correlation was assessed using linkage disequilibrium score regression (LDSR) and the pleiotropy informed conditional FDR approach was applied to identify SNPs associated with SZ conditional on their association with subcortical brain volumes. Mendelian randomization (MR) was used to test for causal association between SZ and each brain region. Results: There was evidence of global pleiotropy between SZ, and all examined subcortical brain regions. Inverse concordance between the genetic determinants of SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus was observed. Increased statistical power to detect SZ risk loci was shown when conditioning on subcortical brain volumes. There was no significant evidence for a causal effect of any of the examined brain regions on schizophrenia risk. Discussion: These data confirm the shared genetic basis of SZ and specific intracranial and subcortical brain volumes and provide evidence for negative concordance between SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus. Leveraging the genetic overlap between SZ and subcortical brain volumes has the potential to provide novel insights into the biological basis of the disorder.
- Full Text:
- Date Issued: 2022
- Authors: Wooton, Olivia , Campbell, Megan M , Jahanshad, Neda , Thompson, Paul , Stein, Dan J , Dalvie, Shareefa
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302450 , vital:58197 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.533"
- Description: Background: Abnormalities in brain structural volumes are well established in schizophrenia (SZ) and have been proposed as an endophenotype for the disorder. Despite increasing interest in the genetic relationship between brain structural volumes and SZ, our knowledge of the genetic overlap between the phenotypes is limited. This study aims to extend our current understanding of the shared genetic influences between SZ and subcortical brain volumes using data from the latest genome-wide association studies for the respective phenotypes (GWAS) and novel statistical approaches. Additionally, we will explore whether the association between schizophrenia and abnormal regional brain volumes is causal in nature. Methods: Summary statistics were obtained from the largest Psychiatric Genomic Consortium (PGC)-SZ GWAS (Ncase = 69,369, Ncontrol = 236,642) and the CHARGEENIGMA-UKBB GWAS of volumetric measures for eight subcortical brain regions (the nucleus accumbens, amygdala, brainstem, caudate nucleus, hippocampus, globus pallidus, putamen, and thalamus), and total intracranial volume (N = 30,983 - 40,380). Single nucleotide polymorphism (SNP) effect concordance analysis (SECA) was used to assess pleiotropy and concordance. Genetic correlation was assessed using linkage disequilibrium score regression (LDSR) and the pleiotropy informed conditional FDR approach was applied to identify SNPs associated with SZ conditional on their association with subcortical brain volumes. Mendelian randomization (MR) was used to test for causal association between SZ and each brain region. Results: There was evidence of global pleiotropy between SZ, and all examined subcortical brain regions. Inverse concordance between the genetic determinants of SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus was observed. Increased statistical power to detect SZ risk loci was shown when conditioning on subcortical brain volumes. There was no significant evidence for a causal effect of any of the examined brain regions on schizophrenia risk. Discussion: These data confirm the shared genetic basis of SZ and specific intracranial and subcortical brain volumes and provide evidence for negative concordance between SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus. Leveraging the genetic overlap between SZ and subcortical brain volumes has the potential to provide novel insights into the biological basis of the disorder.
- Full Text:
- Date Issued: 2022
The genetic architecture of the corpus callosum and its subregions
- Campbell, Megan M, Dalvie, Shareefa, Shadrin, Alexey, Van der Meer, Dennis, Andreassen, Ola, Stein, Dan J, Rokicki, Jaroslav
- Authors: Campbell, Megan M , Dalvie, Shareefa , Shadrin, Alexey , Van der Meer, Dennis , Andreassen, Ola , Stein, Dan J , Rokicki, Jaroslav
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302542 , vital:58206 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.263"
- Description: Background: Regional surface area and thickness of the cerebral cortex and volume of subcortical structures are highly heritable brain morphological features with complex genetic architectures, involving many common genetic variants with small effect sizes. However, the genetic architecture of the corpus callosum (CC) and its subregions remains largely unclear. We aim to determine the heritability and genetic architecture of CC volume and each subregion and the extent to which this overlaps with that of psychiatric disorders. Methods: Genetic and T1-weighted MRI data of 40,894 individuals from the UK-biobank was used to construct a multivariate GWAS. Here, we utilized a multivariate approach (Multivariate Omnibus Statistical Test, MOSTest) to assess the distributive effects of common variants across the five subregions of the CC (posterior, mid posterior, central, mid anterior and anterior) obtained by running the automatic subcortical segmentation algorithm in FreeSurfer 5.3. Gene-set enrichment analyses were performed using MAGMA. Linkage disequilibrium score regression was used to determine the SNP-based heritability of the CC and will be used to assess the genetic correlation between each subregion and a variety of psychiatric disorders. Results: Following MOSTest, 70 independent loci show pooled effects across the 5 subregions of the CC (p more than 5×10-8). Using LDSC, we found evidence to suggest that CC volume is heritable (h2SNP= 0.38, SE=0.03). Significant variants showed enrichment in pathways related to regulation of the nervous system and cell development, neurogenesis, and regulation of neuron differentiation. Gene-set analysis revealed 156 significant genes (p is less than 2.6x10-6). Many of the significant SNPs have been previously associated with white matter hyperintensity volume as well as a range of psychiatric disorders. Discussion: Here we provide the first preliminary evidence to suggest that volume of the CC is heritable. Gene set enrichment analyses identified pathways related to neuron development and neurogenesis, suggesting that CC alteration may have an independent developmental origin. Further investigation into the shared genetic architecture of CC subregions and psychiatric disorders may provide novel insight into disease manifestation.
- Full Text:
- Date Issued: 2022
- Authors: Campbell, Megan M , Dalvie, Shareefa , Shadrin, Alexey , Van der Meer, Dennis , Andreassen, Ola , Stein, Dan J , Rokicki, Jaroslav
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302542 , vital:58206 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.263"
- Description: Background: Regional surface area and thickness of the cerebral cortex and volume of subcortical structures are highly heritable brain morphological features with complex genetic architectures, involving many common genetic variants with small effect sizes. However, the genetic architecture of the corpus callosum (CC) and its subregions remains largely unclear. We aim to determine the heritability and genetic architecture of CC volume and each subregion and the extent to which this overlaps with that of psychiatric disorders. Methods: Genetic and T1-weighted MRI data of 40,894 individuals from the UK-biobank was used to construct a multivariate GWAS. Here, we utilized a multivariate approach (Multivariate Omnibus Statistical Test, MOSTest) to assess the distributive effects of common variants across the five subregions of the CC (posterior, mid posterior, central, mid anterior and anterior) obtained by running the automatic subcortical segmentation algorithm in FreeSurfer 5.3. Gene-set enrichment analyses were performed using MAGMA. Linkage disequilibrium score regression was used to determine the SNP-based heritability of the CC and will be used to assess the genetic correlation between each subregion and a variety of psychiatric disorders. Results: Following MOSTest, 70 independent loci show pooled effects across the 5 subregions of the CC (p more than 5×10-8). Using LDSC, we found evidence to suggest that CC volume is heritable (h2SNP= 0.38, SE=0.03). Significant variants showed enrichment in pathways related to regulation of the nervous system and cell development, neurogenesis, and regulation of neuron differentiation. Gene-set analysis revealed 156 significant genes (p is less than 2.6x10-6). Many of the significant SNPs have been previously associated with white matter hyperintensity volume as well as a range of psychiatric disorders. Discussion: Here we provide the first preliminary evidence to suggest that volume of the CC is heritable. Gene set enrichment analyses identified pathways related to neuron development and neurogenesis, suggesting that CC alteration may have an independent developmental origin. Further investigation into the shared genetic architecture of CC subregions and psychiatric disorders may provide novel insight into disease manifestation.
- Full Text:
- Date Issued: 2022
Impact of an introduced predator (Micropterus salmoides, Centrarchidae) on native estuarine fish elucidated through fatty acid analyses
- Carassou, Laure, Magoro, Mandla L, Whitfield, Alan K, Richoux, Nicole B
- Authors: Carassou, Laure , Magoro, Mandla L , Whitfield, Alan K , Richoux, Nicole B
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/456247 , vital:75496 , xlink:href="https://hal.inrae.fr/hal-04177984/document"
- Description: The introduction of alien fish species can have contrasting impacts on local aquatic communities. The largemouth bass Micropterus salmoides (Centrarchidae; Fig.1) was introduced in 1928 in South Africa for recreational anglers. Concerns about its impact on local indigenous freshwater and estuarine fish populations are raised (Gratwicke and Marshall, 2001; Weyl and Lewis, 2006; Wasserman et al., 2011). In particular, the predatory impact of M. salmoides on estuary-associated juveniles of marine fish species must be elucidated.
- Full Text:
- Date Issued: 2017
- Authors: Carassou, Laure , Magoro, Mandla L , Whitfield, Alan K , Richoux, Nicole B
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/456247 , vital:75496 , xlink:href="https://hal.inrae.fr/hal-04177984/document"
- Description: The introduction of alien fish species can have contrasting impacts on local aquatic communities. The largemouth bass Micropterus salmoides (Centrarchidae; Fig.1) was introduced in 1928 in South Africa for recreational anglers. Concerns about its impact on local indigenous freshwater and estuarine fish populations are raised (Gratwicke and Marshall, 2001; Weyl and Lewis, 2006; Wasserman et al., 2011). In particular, the predatory impact of M. salmoides on estuary-associated juveniles of marine fish species must be elucidated.
- Full Text:
- Date Issued: 2017
MRSA pyruvate kinase inhibitory activity of synthetically derived thiazole containing deoxytopsentin analogues
- Veale, Clinton G L, Zoraghi, Roya, Lobb, Kevin A, Reiner, Neil E, Andersen, Raymond J, Davies-Coleman, Michael T
- Authors: Veale, Clinton G L , Zoraghi, Roya , Lobb, Kevin A , Reiner, Neil E , Andersen, Raymond J , Davies-Coleman, Michael T
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448923 , vital:74771 , xlink:href="https://www.thieme-connect.com/products/ejournals/abstract/10.1055/s-0034-1382365"
- Description: The health care crisis caused by methicillin resistant Staphylococcus aureus (MRSA) is due in part to a lack of fundamental drug discovery research into new antibiotics with novel modes of action. Marine bis-indole alkaloids have proved to be effective in vitro antibacterials. We present the synthesis of thiazole containing analogues of the marine natural product MRSA pyruvate kinase (PK) inhibitor, 6-bromodeoxytopsenin. The synthetic analogues showed moderate activity compared to the marine natural product against MRSA PK, an evolutionary conserved hub protein critical for bacterial survival. Our synthesis, via a Hantzsch thiazole condensation of α-oxo-1H-indole-3-thioacetamides with 2-bromo-1-(1H-indol-3-yl)-ethanones provided several challenges.
- Full Text:
- Date Issued: 2014
- Authors: Veale, Clinton G L , Zoraghi, Roya , Lobb, Kevin A , Reiner, Neil E , Andersen, Raymond J , Davies-Coleman, Michael T
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/448923 , vital:74771 , xlink:href="https://www.thieme-connect.com/products/ejournals/abstract/10.1055/s-0034-1382365"
- Description: The health care crisis caused by methicillin resistant Staphylococcus aureus (MRSA) is due in part to a lack of fundamental drug discovery research into new antibiotics with novel modes of action. Marine bis-indole alkaloids have proved to be effective in vitro antibacterials. We present the synthesis of thiazole containing analogues of the marine natural product MRSA pyruvate kinase (PK) inhibitor, 6-bromodeoxytopsenin. The synthetic analogues showed moderate activity compared to the marine natural product against MRSA PK, an evolutionary conserved hub protein critical for bacterial survival. Our synthesis, via a Hantzsch thiazole condensation of α-oxo-1H-indole-3-thioacetamides with 2-bromo-1-(1H-indol-3-yl)-ethanones provided several challenges.
- Full Text:
- Date Issued: 2014
The Monkey Cage
- Authors: Krueger, Anton
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229763 , vital:49708 , xlink:href="https://hdl.handle.net/10520/EJC149510"
- Full Text:
- Date Issued: 2013
- Authors: Krueger, Anton
- Date: 2013
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229763 , vital:49708 , xlink:href="https://hdl.handle.net/10520/EJC149510"
- Full Text:
- Date Issued: 2013
at the conference in munich
- Authors: Krueger, Anton
- Date: 2010
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229774 , vital:49709 , xlink:href="https://hdl.handle.net/10520/EJC47821"
- Full Text:
- Date Issued: 2010
- Authors: Krueger, Anton
- Date: 2010
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229774 , vital:49709 , xlink:href="https://hdl.handle.net/10520/EJC47821"
- Full Text:
- Date Issued: 2010
St. Petersburg
- Authors: Krueger, Anton
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229818 , vital:49713 , xlink:href="https://hdl.handle.net/10520/EJC47812"
- Full Text:
- Date Issued: 2009
- Authors: Krueger, Anton
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229818 , vital:49713 , xlink:href="https://hdl.handle.net/10520/EJC47812"
- Full Text:
- Date Issued: 2009
White Guys Can't Beg
- Authors: Krueger, Anton
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229796 , vital:49711 , xlink:href="https://hdl.handle.net/10520/EJC47812"
- Full Text:
- Date Issued: 2009
- Authors: Krueger, Anton
- Date: 2009
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229796 , vital:49711 , xlink:href="https://hdl.handle.net/10520/EJC47812"
- Full Text:
- Date Issued: 2009
consumed society
- Authors: Krueger, Anton
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229840 , vital:49716 , xlink:href="https://hdl.handle.net/10520/EJC47802"
- Full Text:
- Date Issued: 2008
- Authors: Krueger, Anton
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229840 , vital:49716 , xlink:href="https://hdl.handle.net/10520/EJC47802"
- Full Text:
- Date Issued: 2008
in a park in Europe
- Authors: Krueger, Anton
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229851 , vital:49717 , xlink:href="https://hdl.handle.net/10520/EJC47802"
- Full Text:
- Date Issued: 2008
- Authors: Krueger, Anton
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229851 , vital:49717 , xlink:href="https://hdl.handle.net/10520/EJC47802"
- Full Text:
- Date Issued: 2008
in the council chambers
- Authors: Krueger, Anton
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229862 , vital:49718 , xlink:href="https://hdl.handle.net/10520/EJC47802"
- Full Text:
- Date Issued: 2008
- Authors: Krueger, Anton
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229862 , vital:49718 , xlink:href="https://hdl.handle.net/10520/EJC47802"
- Full Text:
- Date Issued: 2008
Revised Schools and Sustainability Pack offers Curriculum Support
- Authors: Olvitt, Lausanne L
- Date: 2003
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/389852 , vital:68489 , xlink:href="https://eeasa.org.za/wp-content/uploads/2016/12/Bulletin_vol24-_March-2003.pdf"
- Description: Since the mid 1990s, the School Environmental Policy and Management Plan (SEP) Pack has supported educators in developing a whole-school environmental policy. This year, Share-Net has updated the pack in line with the South African revised National Curriculum and the National Environmental Education Programme (NEEP).
- Full Text:
- Date Issued: 2003
- Authors: Olvitt, Lausanne L
- Date: 2003
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/389852 , vital:68489 , xlink:href="https://eeasa.org.za/wp-content/uploads/2016/12/Bulletin_vol24-_March-2003.pdf"
- Description: Since the mid 1990s, the School Environmental Policy and Management Plan (SEP) Pack has supported educators in developing a whole-school environmental policy. This year, Share-Net has updated the pack in line with the South African revised National Curriculum and the National Environmental Education Programme (NEEP).
- Full Text:
- Date Issued: 2003
Active learning in schools
- Lotz-Sisitka, Heila, Timmermans, Ingrid
- Authors: Lotz-Sisitka, Heila , Timmermans, Ingrid
- Date: 2001
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/389696 , vital:68475 , xlink:href="https://eeasa.org.za/wp-content/uploads/2016/12/Bulletin_vol21-_Sep-2001.pdf"
- Description: The Rhodes University Environmental Education Unit has initiated a project to support school-based environmental education work in Grahamstown. In line with national environmental education policy, the project supports a focus on environmental learning in the context of the OBE curriculum, and provides professional development support to teachers implementing the project (NEEP, 2000). An action research evaluation is taking place to monitor key aspects of the project and a number of interim evaluation reports have been produced (Mbanjwa, 2001).
- Full Text:
- Date Issued: 2001
- Authors: Lotz-Sisitka, Heila , Timmermans, Ingrid
- Date: 2001
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/389696 , vital:68475 , xlink:href="https://eeasa.org.za/wp-content/uploads/2016/12/Bulletin_vol21-_Sep-2001.pdf"
- Description: The Rhodes University Environmental Education Unit has initiated a project to support school-based environmental education work in Grahamstown. In line with national environmental education policy, the project supports a focus on environmental learning in the context of the OBE curriculum, and provides professional development support to teachers implementing the project (NEEP, 2000). An action research evaluation is taking place to monitor key aspects of the project and a number of interim evaluation reports have been produced (Mbanjwa, 2001).
- Full Text:
- Date Issued: 2001
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