Economically important cephalopods of southern Angola, with a focus on the artisanal jig fishery
- Vázquez Morán, Chénelle Lesley
- Authors: Vázquez Morán, Chénelle Lesley
- Date: 2023-03-31
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/422529 , vital:71955 , DOI 10.21504/10962/422529
- Description: The global decline in marine finfish stocks has been met with a concomitant expansion of fisheries for cephalopods. Despite the increase in the exploitation and commercialization of cephalopods, there is a dearth of scientific information for over 90% of the extant species and this is even more marked in the developing world. Angolan capture fisheries production noted a tenfold increase in cephalopod landings between 1994 and 2003. One of the important fisheries is a cephalopod directed jig fishery that targets the squid Loligo reynaudii and the cuttlefish Sepia vermiculata in southern Angola, however, there is a complete lack of socio-ecological information available for this fishery. Hence the aim of this thesis was to provide basic biological and demographic information on L. reynaudii and S. vermiculata distributed off the coast of southern Angola, assess the importance and dependence of local artisanal fishers on these two species and examine the current management strategies and policies in the region This study found that the artisanal cephalopod jig fishery is critical for the livelihoods of the coastal communities of southern Angola, particularly due to the limited alternative income generating opportunities available. The cephalopod jig fishery is highly labour intensive, with fishers spending a considerable amount of time per day, drifting over known fishing grounds. Catch composition of the artisanal jig fishery indicated that squid is the dominant species within the fishery, in terms of numerical abundance and weight. The productivity and progression of the fishery is hampered by a number of ecological, socio-economic and governance constraints, as highlighted by socio-economic surveys conducted with local squid fishers. Such constraints include, but are not limited to declining catches, increased negative interactions with seals, increased inter-sector competition, lack of infrastructure, poor quality fishing equipment as well as a lack of communication and support from government officials. To examine aspects of the biology and demography of L. reynaudii, whole specimens were collected monthly, from the two primary fishing areas in southern Angola; Namibe and Tombua, during two main sampling periods, June 2008 – May 2009 (Period 1) and June 2014 – May 2015 (Period 2). Male L. reynaudii were found to be significantly larger in size and weight than females, however both the average and maximum dorsal mantle length (DML) decreased between sampling periods. Length-at-50% maturity was larger for male L. reynaudii (170.47 mm DML – 1st period, 165.44 mm DML – 2nd period) than female L. reynaudii (114.71 mm DML – 1st period, 109.43 mm DML – 2nd period). Gonadosomatic indices (GSI) varied significantly during month and season for both sexes. Peak GSI coincided with a low catches in the artisanal jig fishery suggesting that the population may undergo a spawning migration away from fishing grounds, during late spring and summer. The theory of a seasonal spawning migration is further supported in this study by the low abundance of juvenile and sub-adult L, reynaudii collected during the study, along with the inability to detect egg beds in known fishing grounds. Stomach content analysis indicated that teleosts were the most important dietary item (66.3% F of the stomach contents). Trachurus capensis and Engraulis encrasicolus are both highly abundant small pelagic fishes in the cold nutrient rich waters of the Benguela Current and dominated the diet of sampled squid during autumn and winter months. It is likely that the prevalence of large, adult squid off the coast of Angola, as observed within the current study, may be ascribed to the suitable environmental conditions and the abundance of suitable prey. The results from the current study indicate that the southern Angolan subpopulation reveals similarities to that of the West Coast subpopulation of squid in South Africa, with regards to demographics and reproductive characteristics. It is likely that the population in southern Angola is an extension of the South African subpopulation of L. reynaudii on the western extremities. To examine the basic population biology and ecology of S. vermiculata off southern Angola whole specimens were collected from the fishery between December 2014 and April 2015. Morphological results indicate clear sexual dimorphism in soft part characteristics, cuttlebone and beak morphometry. Length-at-50% maturity was smaller in male S. vermiculata (217.53 mm DML) than female S. vermiculata (231.13 mm DML), although these differences were not significant. Stomach content analysis indicated that S. vermiculata predominantly fed on teleost species which were found within 64.5% of stomachs. Teleosts were more dominant in the diet of male S. vermiculata (78.6% F) than female S. vermiculata (53.0% F), which ate a more varied diet including crustaceans (41.2% F) and cephalopods (17.7% F). Availability and abundance of cuttlefish in Namibe indicates that the species may undergo a spatio-temporal shift in distribution, with majority of the artisanal catches of S. vermiculata occurring during summer months. The results from the current study highlights the fisheries potential of L. reynaudii and S. vermiculata and the dependence of artisanal fishers in southern Angola on cephalopods, and more specifically squid. The development of sustainable fisheries management strategies for the artisanal cephalopod jig fishery is critical, particularly as the global exploitation of cephalopods continues to increase with declining finfish populations. Failure to implement management strategies may remove this critical economic safety net for vulnerable coastal communities which have little alternative livelihood opportunities. Ongoing ecological research, a co-management approach and an increased consideration of local ecological knowledge will assist in designing appropriate management plans for the southern Angolan cephalopod jig fishery. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
- Full Text:
- Authors: Vázquez Morán, Chénelle Lesley
- Date: 2023-03-31
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/422529 , vital:71955 , DOI 10.21504/10962/422529
- Description: The global decline in marine finfish stocks has been met with a concomitant expansion of fisheries for cephalopods. Despite the increase in the exploitation and commercialization of cephalopods, there is a dearth of scientific information for over 90% of the extant species and this is even more marked in the developing world. Angolan capture fisheries production noted a tenfold increase in cephalopod landings between 1994 and 2003. One of the important fisheries is a cephalopod directed jig fishery that targets the squid Loligo reynaudii and the cuttlefish Sepia vermiculata in southern Angola, however, there is a complete lack of socio-ecological information available for this fishery. Hence the aim of this thesis was to provide basic biological and demographic information on L. reynaudii and S. vermiculata distributed off the coast of southern Angola, assess the importance and dependence of local artisanal fishers on these two species and examine the current management strategies and policies in the region This study found that the artisanal cephalopod jig fishery is critical for the livelihoods of the coastal communities of southern Angola, particularly due to the limited alternative income generating opportunities available. The cephalopod jig fishery is highly labour intensive, with fishers spending a considerable amount of time per day, drifting over known fishing grounds. Catch composition of the artisanal jig fishery indicated that squid is the dominant species within the fishery, in terms of numerical abundance and weight. The productivity and progression of the fishery is hampered by a number of ecological, socio-economic and governance constraints, as highlighted by socio-economic surveys conducted with local squid fishers. Such constraints include, but are not limited to declining catches, increased negative interactions with seals, increased inter-sector competition, lack of infrastructure, poor quality fishing equipment as well as a lack of communication and support from government officials. To examine aspects of the biology and demography of L. reynaudii, whole specimens were collected monthly, from the two primary fishing areas in southern Angola; Namibe and Tombua, during two main sampling periods, June 2008 – May 2009 (Period 1) and June 2014 – May 2015 (Period 2). Male L. reynaudii were found to be significantly larger in size and weight than females, however both the average and maximum dorsal mantle length (DML) decreased between sampling periods. Length-at-50% maturity was larger for male L. reynaudii (170.47 mm DML – 1st period, 165.44 mm DML – 2nd period) than female L. reynaudii (114.71 mm DML – 1st period, 109.43 mm DML – 2nd period). Gonadosomatic indices (GSI) varied significantly during month and season for both sexes. Peak GSI coincided with a low catches in the artisanal jig fishery suggesting that the population may undergo a spawning migration away from fishing grounds, during late spring and summer. The theory of a seasonal spawning migration is further supported in this study by the low abundance of juvenile and sub-adult L, reynaudii collected during the study, along with the inability to detect egg beds in known fishing grounds. Stomach content analysis indicated that teleosts were the most important dietary item (66.3% F of the stomach contents). Trachurus capensis and Engraulis encrasicolus are both highly abundant small pelagic fishes in the cold nutrient rich waters of the Benguela Current and dominated the diet of sampled squid during autumn and winter months. It is likely that the prevalence of large, adult squid off the coast of Angola, as observed within the current study, may be ascribed to the suitable environmental conditions and the abundance of suitable prey. The results from the current study indicate that the southern Angolan subpopulation reveals similarities to that of the West Coast subpopulation of squid in South Africa, with regards to demographics and reproductive characteristics. It is likely that the population in southern Angola is an extension of the South African subpopulation of L. reynaudii on the western extremities. To examine the basic population biology and ecology of S. vermiculata off southern Angola whole specimens were collected from the fishery between December 2014 and April 2015. Morphological results indicate clear sexual dimorphism in soft part characteristics, cuttlebone and beak morphometry. Length-at-50% maturity was smaller in male S. vermiculata (217.53 mm DML) than female S. vermiculata (231.13 mm DML), although these differences were not significant. Stomach content analysis indicated that S. vermiculata predominantly fed on teleost species which were found within 64.5% of stomachs. Teleosts were more dominant in the diet of male S. vermiculata (78.6% F) than female S. vermiculata (53.0% F), which ate a more varied diet including crustaceans (41.2% F) and cephalopods (17.7% F). Availability and abundance of cuttlefish in Namibe indicates that the species may undergo a spatio-temporal shift in distribution, with majority of the artisanal catches of S. vermiculata occurring during summer months. The results from the current study highlights the fisheries potential of L. reynaudii and S. vermiculata and the dependence of artisanal fishers in southern Angola on cephalopods, and more specifically squid. The development of sustainable fisheries management strategies for the artisanal cephalopod jig fishery is critical, particularly as the global exploitation of cephalopods continues to increase with declining finfish populations. Failure to implement management strategies may remove this critical economic safety net for vulnerable coastal communities which have little alternative livelihood opportunities. Ongoing ecological research, a co-management approach and an increased consideration of local ecological knowledge will assist in designing appropriate management plans for the southern Angolan cephalopod jig fishery. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2023
- Full Text:
Pathi’s sister is still troubling
- Authors: Naidoo, Savani
- Date: 2023-03-30
- Subjects: Creative writing (Higher education) South Africa , South African fiction (English) 21st century , Short stories, South African (English) 21st century , Diaries -- Authorship , Books Reviews
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/408942 , vital:70539
- Description: My thesis is a collection of micro fiction, flash fiction, fairy tales, vignettes and short stories which explore the tension of being both an insider and an outsider. I have access to different cultures without belonging to any of them: as a child, my family moved from a South African Indian community to a formerly whites-only suburb; as an adult I have lived in South Korea, the United Arab Emirates and Sudan. My prose draws on my life experiences, family legends, neighbourhood gossip, news reports and historical events to question norms and ideas that I may have taken for granted had I been fully inside a single culture. In my thesis I frequently spell words phonetically to mimic how I hear or remember them. I also borrow words from languages I don’t speak. I want the languages I use and mix to corrupt each other, as Raymond Federman put it, in order to better express the voices and contexts of the communities I draw inspiration from. Kuzhali Manickavel’s Things We Found During the Autopsy showed me that culturally rich imagery can be used without interrupting narrative flow with explanations. I am also influenced by the poetic sense of rhythm and melody of Lydia Davis’s minimalist prose, and by Sandra Cisneros’s The House on Mango Street, where each concise short story stands alone but together creates a broad understanding of people and place. Anthologies such as PP/FF, edited by Peter Conners, and My Mother She Killed Me, My Father He Ate Me, edited by Kate Bernheimer, have inspired me to be bold in finding the form that best allows each narrative to be told. , Thesis (MA) -- Faculty of Humanities, School of Languages and Literatures, 2023
- Full Text:
- Authors: Naidoo, Savani
- Date: 2023-03-30
- Subjects: Creative writing (Higher education) South Africa , South African fiction (English) 21st century , Short stories, South African (English) 21st century , Diaries -- Authorship , Books Reviews
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/408942 , vital:70539
- Description: My thesis is a collection of micro fiction, flash fiction, fairy tales, vignettes and short stories which explore the tension of being both an insider and an outsider. I have access to different cultures without belonging to any of them: as a child, my family moved from a South African Indian community to a formerly whites-only suburb; as an adult I have lived in South Korea, the United Arab Emirates and Sudan. My prose draws on my life experiences, family legends, neighbourhood gossip, news reports and historical events to question norms and ideas that I may have taken for granted had I been fully inside a single culture. In my thesis I frequently spell words phonetically to mimic how I hear or remember them. I also borrow words from languages I don’t speak. I want the languages I use and mix to corrupt each other, as Raymond Federman put it, in order to better express the voices and contexts of the communities I draw inspiration from. Kuzhali Manickavel’s Things We Found During the Autopsy showed me that culturally rich imagery can be used without interrupting narrative flow with explanations. I am also influenced by the poetic sense of rhythm and melody of Lydia Davis’s minimalist prose, and by Sandra Cisneros’s The House on Mango Street, where each concise short story stands alone but together creates a broad understanding of people and place. Anthologies such as PP/FF, edited by Peter Conners, and My Mother She Killed Me, My Father He Ate Me, edited by Kate Bernheimer, have inspired me to be bold in finding the form that best allows each narrative to be told. , Thesis (MA) -- Faculty of Humanities, School of Languages and Literatures, 2023
- Full Text:
Needs assessment for gender-sensitive training in substance use disorder treatment for gender-nonconforming people
- Authors: Tao, Lane
- Date: 2022-04-07
- Subjects: Discrimination in mental health services , Substance abuse Psychological aspects , Substance abuse Social aspects , Substance abuse Treatment , LGBTQ+ people Psychology , LGBTQ+ people Mental health services , Gender mainstreaming , Psychiatric ethics
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/234339 , vital:50187
- Description: Research suggests that queer people face both general discrimination and inadequate support in substance use disorder (SUD) treatment. One recommendation made by scholarship to address this is to improve the treatment capabilities of practitioners, thus improving practitioner readiness and reducing access barriers for a potentially at-risk population. The purpose of this study is to explore SUD treatment practitioners’ experiences of treating queer clients and identify their training needs. Semi-structured interviews were conducted with seven registered mental healthcare practitioners operating in Cape Town, South Africa. Data was analysed via thematic analysis, using a social constructionist approach to gender and practitioner knowledge. The findings reflect a strong interest in gender-sensitive training to better prepare practitioners for treating queer clients. Participants provided feedback on areas in need of improvement and made recommendations on how training should be conducted. Findings indicate that queer clients may enter treatment with a high burden of trauma due to discrimination, and that healthcare structures abiding by a binary approach to gender may not be able to address queer people’s diverse needs. Recommendations for future research are made, with particular emphasis on including queer people in surveillance data. Target areas for training programmes are described, with emphasis on terminological understanding and accessibility of training. , Thesis (MA) -- Faculty of Humanities, Psychology, 2022
- Full Text:
- Authors: Tao, Lane
- Date: 2022-04-07
- Subjects: Discrimination in mental health services , Substance abuse Psychological aspects , Substance abuse Social aspects , Substance abuse Treatment , LGBTQ+ people Psychology , LGBTQ+ people Mental health services , Gender mainstreaming , Psychiatric ethics
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/234339 , vital:50187
- Description: Research suggests that queer people face both general discrimination and inadequate support in substance use disorder (SUD) treatment. One recommendation made by scholarship to address this is to improve the treatment capabilities of practitioners, thus improving practitioner readiness and reducing access barriers for a potentially at-risk population. The purpose of this study is to explore SUD treatment practitioners’ experiences of treating queer clients and identify their training needs. Semi-structured interviews were conducted with seven registered mental healthcare practitioners operating in Cape Town, South Africa. Data was analysed via thematic analysis, using a social constructionist approach to gender and practitioner knowledge. The findings reflect a strong interest in gender-sensitive training to better prepare practitioners for treating queer clients. Participants provided feedback on areas in need of improvement and made recommendations on how training should be conducted. Findings indicate that queer clients may enter treatment with a high burden of trauma due to discrimination, and that healthcare structures abiding by a binary approach to gender may not be able to address queer people’s diverse needs. Recommendations for future research are made, with particular emphasis on including queer people in surveillance data. Target areas for training programmes are described, with emphasis on terminological understanding and accessibility of training. , Thesis (MA) -- Faculty of Humanities, Psychology, 2022
- Full Text:
Taxonomic, ecological and biogeographic re-evaluation of temperate stream fishes in Southern Africa: a case study of the enteromius anoplus complex
- Authors: Kambikambi, Manda Juliet
- Date: 2021-10-29
- Subjects: Stream ecology South Africa , Barbs (Fish) Ecology South Africa Cape Fold Belt , Barbs (Fish) Ecology South Africa Highveld (Region) , Barbs (Fish) Ecology South Africa Amathole District Municipality , Biotic communities South Africa , Fishes Classification , Cryptic species , Chubbyhead barb
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191023 , vital:45051 , 10.21504/10962/191023
- Description: Worldwide, cryptic species, which comprise two or more distinct species that are classified as one due to their morphological similarity, are more common than previously thought. In South Africa, the chubbyhead barb, Enteromius anoplus (Weber, 1897), is the most widespread freshwater fish species. The widespread occurrence of this species across different river basins raised questions on its taxonomic status due to the likely occurrence of hidden diversity. This further raised the need to evaluate the ecological patterns associated with likely occurrence of such hidden diversity. Phylogenetic analyses of the cytochrome b gene of E. anoplus populations across South Africa revealed the occurrence of four genetically distinct species. These findings supported the restoration Enteromius cernuus (Barnard 1943) stat. rev. from the Olifants River system; the restoration of Enteromius anoplus sensu stricto (Weber 1897) stat. rev. from the Gouritz River system; the redescription of Enteromius oraniensis (Barnard 1943) stat. rev. from the Orange River system; and the description of a new species, Enteromius mandelai sp. nov. from the Eastern Cape rivers. Analyses of morphometric and meristic data revealed that these species were differentiated based on barbel length and number of lateral line scales. Ecological studies on Enteromius mandelai were conducted within headwater streams of major river systems in the Eastern Cape region. These headwater streams had different catchment characteristics ranging from near-natural to anthropogenically-perturbed mainly due to agriculture-related disturbances and invasion of riparian zones by non-native plants. Stable isotope analysis provided evidence of trophic plasticity for E. mandelai across the different headwater streams. Specifically, E. mandelai exhibited large isotopic niches in agriculture-disturbed headwater streams, whereas small isotopic niches were observed in headwater streams invaded by non-native plants. Because of the evidence of trophic plasticity for E. mandelai, this study further hypothesized that this species would exhibit variable environmental niche patterns related to its distribution, abundance and the presence of contra-specifics due to different abiotic factors across its range. Enteromius mandelai was generally most abundant at sites with high total dissolved solids and sand substratum, which was characteristic of large pool habitats, and least abundant at sites with high turbidity. In the Great Fish River, E. mandelai occurred as the only species in most headwater sites, whereas in the Keiskamma and Buffalo River systems, it co-occurred with Amatolacypris trevelyani and Sandelia bainsii. Enteromius mandelai was, nevertheless, found to be ubiquitous together with having wide environmental niches, and exhibited no discernible patterns in its habitat associations. The taxonomic re-evaluation of the E. anoplus complex, which provided evidence of the existence of new species, has implications for the biogeographic zonation of the ichthyofauna of the Cape Fold Ecoregion (CFE), Amathole-Winterberg Highlands Ecoregion (AWHE) and the Southern Temperate Highveld Ecoregion (STHE). For example, the currently recognised southern limit of the STHE, which encompasses the AWHE, is based on the occurrence of E. anoplus, Enteromius pallidus and Labeo umbratus. However, evidence from this and other recent studies indicate the occurrence of either new species or distinct lineages in the southern-most section of the STHE, which is consistent with the patterns observed in the CFE. Comparison of taxonomic composition showed that species in the eastern part of the CFE were similar to species in the AWHE and the southern-most section of the STHE. Because of the close affinities among most of the new taxa in these regions, this study proposes that the current delimitation of the CFE should be reviewed by extending it to include the AWHE and sections of the STHE. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Authors: Kambikambi, Manda Juliet
- Date: 2021-10-29
- Subjects: Stream ecology South Africa , Barbs (Fish) Ecology South Africa Cape Fold Belt , Barbs (Fish) Ecology South Africa Highveld (Region) , Barbs (Fish) Ecology South Africa Amathole District Municipality , Biotic communities South Africa , Fishes Classification , Cryptic species , Chubbyhead barb
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191023 , vital:45051 , 10.21504/10962/191023
- Description: Worldwide, cryptic species, which comprise two or more distinct species that are classified as one due to their morphological similarity, are more common than previously thought. In South Africa, the chubbyhead barb, Enteromius anoplus (Weber, 1897), is the most widespread freshwater fish species. The widespread occurrence of this species across different river basins raised questions on its taxonomic status due to the likely occurrence of hidden diversity. This further raised the need to evaluate the ecological patterns associated with likely occurrence of such hidden diversity. Phylogenetic analyses of the cytochrome b gene of E. anoplus populations across South Africa revealed the occurrence of four genetically distinct species. These findings supported the restoration Enteromius cernuus (Barnard 1943) stat. rev. from the Olifants River system; the restoration of Enteromius anoplus sensu stricto (Weber 1897) stat. rev. from the Gouritz River system; the redescription of Enteromius oraniensis (Barnard 1943) stat. rev. from the Orange River system; and the description of a new species, Enteromius mandelai sp. nov. from the Eastern Cape rivers. Analyses of morphometric and meristic data revealed that these species were differentiated based on barbel length and number of lateral line scales. Ecological studies on Enteromius mandelai were conducted within headwater streams of major river systems in the Eastern Cape region. These headwater streams had different catchment characteristics ranging from near-natural to anthropogenically-perturbed mainly due to agriculture-related disturbances and invasion of riparian zones by non-native plants. Stable isotope analysis provided evidence of trophic plasticity for E. mandelai across the different headwater streams. Specifically, E. mandelai exhibited large isotopic niches in agriculture-disturbed headwater streams, whereas small isotopic niches were observed in headwater streams invaded by non-native plants. Because of the evidence of trophic plasticity for E. mandelai, this study further hypothesized that this species would exhibit variable environmental niche patterns related to its distribution, abundance and the presence of contra-specifics due to different abiotic factors across its range. Enteromius mandelai was generally most abundant at sites with high total dissolved solids and sand substratum, which was characteristic of large pool habitats, and least abundant at sites with high turbidity. In the Great Fish River, E. mandelai occurred as the only species in most headwater sites, whereas in the Keiskamma and Buffalo River systems, it co-occurred with Amatolacypris trevelyani and Sandelia bainsii. Enteromius mandelai was, nevertheless, found to be ubiquitous together with having wide environmental niches, and exhibited no discernible patterns in its habitat associations. The taxonomic re-evaluation of the E. anoplus complex, which provided evidence of the existence of new species, has implications for the biogeographic zonation of the ichthyofauna of the Cape Fold Ecoregion (CFE), Amathole-Winterberg Highlands Ecoregion (AWHE) and the Southern Temperate Highveld Ecoregion (STHE). For example, the currently recognised southern limit of the STHE, which encompasses the AWHE, is based on the occurrence of E. anoplus, Enteromius pallidus and Labeo umbratus. However, evidence from this and other recent studies indicate the occurrence of either new species or distinct lineages in the southern-most section of the STHE, which is consistent with the patterns observed in the CFE. Comparison of taxonomic composition showed that species in the eastern part of the CFE were similar to species in the AWHE and the southern-most section of the STHE. Because of the close affinities among most of the new taxa in these regions, this study proposes that the current delimitation of the CFE should be reviewed by extending it to include the AWHE and sections of the STHE. , Thesis (PhD) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
Soil microbial properties and apple tree performance under conventional and organic management
- Authors: Meyer, André Harold
- Date: 2016
- Subjects: Soil management South Africa Western Cape , Agricultural chemicals Environmental aspects , Soil microbiology South Africa Western Cape , Vesicular-arbuscular mycorrhizas , Enzymes Biotechnology , Apples Organic farming South Africa Western Cape
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/64545 , vital:28557
- Description: Conventional (CON) soil management that permits the use of agrochemicals is currently the most common form of management in Western Cape deciduous fruit orchards. There is increasing pressure to minimise or eliminate synthetic agrochemical usage due to its potentially harmful effect on the environment, particularly to non-target soil microorganisms, and to the functions and processes they perform or mediate. In apple orchards, organic (ORG) practices exclude the use of synthetic pesticides and herbicides making use instead of organic fertilisers and naturally derived products as defined by organic certification programs. ORG practices aim to improve nutrient availability, yield, and long-term orchard sustainability relative to CON orchard management practices. If ORG and CON orchard floor management practices affect orchard ecosystems differently, such differences should be measurable in terms of differences in microbiological parameters. In this thesis it is hypothesised that ORG practices would induce positive soil microbiological responses in Western Cape apple orchards relative to CON practices, and by inference general soil health and apple tree performance. To test this hypothesis a polyphasic approach was adopted. This involved measurement of soil microbial activities and functional diversities, by enzyme activity (using colorimetric assays) and carbon-substrate utilisation (using the BIOLOG™ system), respectively. With reference to the enzyme analyses, the performance of a literature-validated, enzyme-based soil health index was also tested. The analyses were supported by coarse-level comparisons of the magnitude of bacteria, fungi, actinobacteria and total heterotroph populations using traditional culturing techniques (dilution plating on growth media). The extent to which the microbial status differed between the applied ORG and CON treatments was thought likely to reflect such treatment-induced variables as soil nutrient status, apple tree nutritional response, tree growth and yield, all of which were determined. Because the root systems of deciduous fruit trees commonly extend to depths >60 cm in well-prepared soils, microbial enzyme activities in the soil depth intervals corresponding to the lower rootzone, were also investigated. This research was carried out in a randomized field trial. Finally, to gain a broader understanding of the effects of contrasting soil management systems on soil microbiology under a greater variety of environmental conditions, arbuscular mycorrhizal (AM) fungal dynamics were explored in a survey of commercial apple orchards. These orchards were selected to span the range of environmental conditions that occur in the apple production areas of the Western Cape. Orchard soils under ORG management promoted richer microbial ecosystems, and appeared to be better able to sustain community metabolic diversity and, by inference, the functions mediated by soil microbial communities, than those under CON management. This implies that ORG approaches possibly afford a better option to sustain critical ecosystem functions than CON management. This possibly explains why use of straw mulches and compost in accordance with ORG practices, compared with CON practices, promoted β-glucosidase, acid phosphatase and urease activities rather than affecting the abundance of the micro-organisms that produce these enzymes. Enzyme activities in the 0–30 cm soil intervals were also more effectively promoted by ORG than CON practices, although no differences were observed at lower depth intervals. ORG practices promoted functional AM associations more effectively than CON practices, but the abundance of glomalin, a beneficial by-product of AM fungi, was unaffected. The greater enzyme activities and higher root colonisation levels in the ORG treatments probably contributed to improved nutritional effects that caused greater vegetative growth, but lower yields, in the ORG treatments. Yield suppression was conceivably due to excessive vegetative growth induced by oversupply of compost and the mineral nutrients contained therein. The survey of Western Cape apple orchards suggested that neither glomalin nor root colonisation bore any specific relationship to production area, cultivation practice, scion x rootstock combination, or, in the case of root colonisation, with any chemical parameters. However, the effect of season on glomalin was conclusively shown, being higher in summer than in spring, as was the lack of any effect of year on glomalin and root colonisation. Collectively, these results showed that ORG soil management promote soil microbiology, soil nutrient status, and apple tree performance compared to CON management. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2016
- Full Text:
- Authors: Meyer, André Harold
- Date: 2016
- Subjects: Soil management South Africa Western Cape , Agricultural chemicals Environmental aspects , Soil microbiology South Africa Western Cape , Vesicular-arbuscular mycorrhizas , Enzymes Biotechnology , Apples Organic farming South Africa Western Cape
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/64545 , vital:28557
- Description: Conventional (CON) soil management that permits the use of agrochemicals is currently the most common form of management in Western Cape deciduous fruit orchards. There is increasing pressure to minimise or eliminate synthetic agrochemical usage due to its potentially harmful effect on the environment, particularly to non-target soil microorganisms, and to the functions and processes they perform or mediate. In apple orchards, organic (ORG) practices exclude the use of synthetic pesticides and herbicides making use instead of organic fertilisers and naturally derived products as defined by organic certification programs. ORG practices aim to improve nutrient availability, yield, and long-term orchard sustainability relative to CON orchard management practices. If ORG and CON orchard floor management practices affect orchard ecosystems differently, such differences should be measurable in terms of differences in microbiological parameters. In this thesis it is hypothesised that ORG practices would induce positive soil microbiological responses in Western Cape apple orchards relative to CON practices, and by inference general soil health and apple tree performance. To test this hypothesis a polyphasic approach was adopted. This involved measurement of soil microbial activities and functional diversities, by enzyme activity (using colorimetric assays) and carbon-substrate utilisation (using the BIOLOG™ system), respectively. With reference to the enzyme analyses, the performance of a literature-validated, enzyme-based soil health index was also tested. The analyses were supported by coarse-level comparisons of the magnitude of bacteria, fungi, actinobacteria and total heterotroph populations using traditional culturing techniques (dilution plating on growth media). The extent to which the microbial status differed between the applied ORG and CON treatments was thought likely to reflect such treatment-induced variables as soil nutrient status, apple tree nutritional response, tree growth and yield, all of which were determined. Because the root systems of deciduous fruit trees commonly extend to depths >60 cm in well-prepared soils, microbial enzyme activities in the soil depth intervals corresponding to the lower rootzone, were also investigated. This research was carried out in a randomized field trial. Finally, to gain a broader understanding of the effects of contrasting soil management systems on soil microbiology under a greater variety of environmental conditions, arbuscular mycorrhizal (AM) fungal dynamics were explored in a survey of commercial apple orchards. These orchards were selected to span the range of environmental conditions that occur in the apple production areas of the Western Cape. Orchard soils under ORG management promoted richer microbial ecosystems, and appeared to be better able to sustain community metabolic diversity and, by inference, the functions mediated by soil microbial communities, than those under CON management. This implies that ORG approaches possibly afford a better option to sustain critical ecosystem functions than CON management. This possibly explains why use of straw mulches and compost in accordance with ORG practices, compared with CON practices, promoted β-glucosidase, acid phosphatase and urease activities rather than affecting the abundance of the micro-organisms that produce these enzymes. Enzyme activities in the 0–30 cm soil intervals were also more effectively promoted by ORG than CON practices, although no differences were observed at lower depth intervals. ORG practices promoted functional AM associations more effectively than CON practices, but the abundance of glomalin, a beneficial by-product of AM fungi, was unaffected. The greater enzyme activities and higher root colonisation levels in the ORG treatments probably contributed to improved nutritional effects that caused greater vegetative growth, but lower yields, in the ORG treatments. Yield suppression was conceivably due to excessive vegetative growth induced by oversupply of compost and the mineral nutrients contained therein. The survey of Western Cape apple orchards suggested that neither glomalin nor root colonisation bore any specific relationship to production area, cultivation practice, scion x rootstock combination, or, in the case of root colonisation, with any chemical parameters. However, the effect of season on glomalin was conclusively shown, being higher in summer than in spring, as was the lack of any effect of year on glomalin and root colonisation. Collectively, these results showed that ORG soil management promote soil microbiology, soil nutrient status, and apple tree performance compared to CON management. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2016
- Full Text:
Applications of camphor-derived chiral auxiliaries in the asymmetric synthesis of α-amino acids and other systems
- Authors: Matjila, Joseph Moemise
- Date: 1998-04
- Subjects: Uncatalogued
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191501 , vital:45106
- Description: A viable synthetic route to camphor-derived imino lactones as precursors for the asymmetric synthesis of a-amino acids has been established. Several synthetic strategies have been investigated and the required regioisomeric imino lactones were finally obtained via the step-wise condensation of JV-(carbobenzyloxy)glycine with the a-ketols, 3-exo-hydroxycamphor and 2-exo- hydroxy-3-bomanone. Enolates of the camphor imino lactones, generated using potassium tert- butoxide, were reacted with a range of alkyl halides. Dialkylation was observed using the 2-imino lactone, while the regioisomeric 3-imino lactone derivative gave monoalkylated products with diastereoselectivities, shown by NMR spectroscopy, to range from 43% d.e. for the methylated product to > 99% d.e. for larger alkyl groups. The expected preference for endo-alkylation is supported by NMR (chemical shift, coupling constant and NOE) data and was confirmed by acidic hydrolysis of the pentylated 3-imino lactone to afford the known acid. Computer modelling, with the software package HYPERCHEM®, was used to explore the conformational properties of the alkylated products and their enolate precursors. Exploratory work on the enantiomeric beneficiation of racemic amino acids, using alkylated imino lactone derivatives, revealed preferential exo-protonation of the enolate intermediates. Asymmetric Baylis-Hillman reactions between a novel camphor-derived acrylic ester and a range of aldehydes afforded the corresponding 2-(hydroxyalkyl)acrylates in up to 59% d.e., the observed stereoselectivities being sensitive to both steric and electronic factors. Attempts to prepare imino lactone derivatives from ketopinic acid, although unsuccessful, led to the isolation of two novel W-(carbobenzyloxy)glycinates, whose structures were established by 1- and 2-D NMR spectroscopy. Attempts to prepare "BINAP" analogues from dibomyl ether's also proved unsuccessful, but the investigation led to the discovery of a third, novel dibomyl ether. , Thesis (PhD) -- Faculty of Science, Chemistry, 1998
- Full Text:
- Authors: Matjila, Joseph Moemise
- Date: 1998-04
- Subjects: Uncatalogued
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/191501 , vital:45106
- Description: A viable synthetic route to camphor-derived imino lactones as precursors for the asymmetric synthesis of a-amino acids has been established. Several synthetic strategies have been investigated and the required regioisomeric imino lactones were finally obtained via the step-wise condensation of JV-(carbobenzyloxy)glycine with the a-ketols, 3-exo-hydroxycamphor and 2-exo- hydroxy-3-bomanone. Enolates of the camphor imino lactones, generated using potassium tert- butoxide, were reacted with a range of alkyl halides. Dialkylation was observed using the 2-imino lactone, while the regioisomeric 3-imino lactone derivative gave monoalkylated products with diastereoselectivities, shown by NMR spectroscopy, to range from 43% d.e. for the methylated product to > 99% d.e. for larger alkyl groups. The expected preference for endo-alkylation is supported by NMR (chemical shift, coupling constant and NOE) data and was confirmed by acidic hydrolysis of the pentylated 3-imino lactone to afford the known acid. Computer modelling, with the software package HYPERCHEM®, was used to explore the conformational properties of the alkylated products and their enolate precursors. Exploratory work on the enantiomeric beneficiation of racemic amino acids, using alkylated imino lactone derivatives, revealed preferential exo-protonation of the enolate intermediates. Asymmetric Baylis-Hillman reactions between a novel camphor-derived acrylic ester and a range of aldehydes afforded the corresponding 2-(hydroxyalkyl)acrylates in up to 59% d.e., the observed stereoselectivities being sensitive to both steric and electronic factors. Attempts to prepare imino lactone derivatives from ketopinic acid, although unsuccessful, led to the isolation of two novel W-(carbobenzyloxy)glycinates, whose structures were established by 1- and 2-D NMR spectroscopy. Attempts to prepare "BINAP" analogues from dibomyl ether's also proved unsuccessful, but the investigation led to the discovery of a third, novel dibomyl ether. , Thesis (PhD) -- Faculty of Science, Chemistry, 1998
- Full Text:
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