A review of marine phylogeography in southern Africa
- Teske, Peter R, von der Heyden, Sophie, McQuaid, Christopher D, Barker, Nigel P
- Authors: Teske, Peter R , von der Heyden, Sophie , McQuaid, Christopher D , Barker, Nigel P
- Date: 2011
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445392 , vital:74382 , https://hdl.handle.net/10520/EJC97146
- Description: The southern African marine realm is located at the transition zone between the Atlantic and Indo-Pacific biomes. Its biodiversity is particularly rich and comprises faunal and floral elements from the two major oceanic regions, as well as a large number of endemics. Within this realm, strikingly different biota occur in close geographic proximity to each other, and many of the species with distributions spanning two or more of the region's marine biogeographic provinces are divided into evolutionary units that can often only be distinguished on the basis of genetic data. In this review, we describe the state of marine phylogeography in southern Africa, that is, the study of evolutionary relationships at the species level, or amongst closely related species, in relation to the region's marine environment. We focus particularly on coastal phylogeography, where much progress has recently been made in identifying phylogeographic breaks and explaining how they originated and are maintained. We also highlight numerous shortcomings that should be addressed in the near future. These include: the limited data available for commercially important organisms, particularly offshore species; the paucity of oceanographic data for nearshore areas; a dearth of studies based on multilocus data; and the fact that studying the role of diversifying selection in speciation has been limited to physiological approaches to the exclusion of genetics. It is becoming apparent that the southern African marine realm is one of the world's most interesting environments in which to study the evolutionary processes that shape not only regional, but also global patterns of marine biodiversity.
- Full Text:
- Authors: Teske, Peter R , von der Heyden, Sophie , McQuaid, Christopher D , Barker, Nigel P
- Date: 2011
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445392 , vital:74382 , https://hdl.handle.net/10520/EJC97146
- Description: The southern African marine realm is located at the transition zone between the Atlantic and Indo-Pacific biomes. Its biodiversity is particularly rich and comprises faunal and floral elements from the two major oceanic regions, as well as a large number of endemics. Within this realm, strikingly different biota occur in close geographic proximity to each other, and many of the species with distributions spanning two or more of the region's marine biogeographic provinces are divided into evolutionary units that can often only be distinguished on the basis of genetic data. In this review, we describe the state of marine phylogeography in southern Africa, that is, the study of evolutionary relationships at the species level, or amongst closely related species, in relation to the region's marine environment. We focus particularly on coastal phylogeography, where much progress has recently been made in identifying phylogeographic breaks and explaining how they originated and are maintained. We also highlight numerous shortcomings that should be addressed in the near future. These include: the limited data available for commercially important organisms, particularly offshore species; the paucity of oceanographic data for nearshore areas; a dearth of studies based on multilocus data; and the fact that studying the role of diversifying selection in speciation has been limited to physiological approaches to the exclusion of genetics. It is becoming apparent that the southern African marine realm is one of the world's most interesting environments in which to study the evolutionary processes that shape not only regional, but also global patterns of marine biodiversity.
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Life history and population dynamics of invasive common carp, Cyprinus carpio, within a large turbid African impoundment
- Winker, A Henning, Weyl, Olaf L F, Booth, Anthony J, Ellender, Bruce R
- Authors: Winker, A Henning , Weyl, Olaf L F , Booth, Anthony J , Ellender, Bruce R
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124898 , vital:35708 , https://doi.10.1071/MF11054
- Description: Common carp (Cyprinus carpio) is one of the world’s most widely introduced and established freshwater fishes (Casal 2006). The species is considered to be one of the eight most invasive freshwater fishes (Lowe et al. 2000) and worldwide, it accounts for most of the records of successful establishments and adverse ecological effects (Casal 2006; Kulhanek et al. 2011). This invasive success suggests that feral C. carpio is equipped with a set of adaptable life history attributes that allow it to successfully colonise a wide range of habitats (Koehn 2004; Zambrano et al. 2006; Britton et al. 2007). Where feral C. carpio occurs in high densities, it is often perceived as an invasive pest species (Sivakumaran et al. 2003; Brown and Walker 2004; Koehn 2004) because it can have severe impacts on habitat heterogeneity and biodiversity by increasing water turbidity through its bottom feeding behaviour, increasing nutrient availability, decreasing benthic and macrophyte density and diversity, altering zooplankton assemblages and decreasing endemic fish abundance (Zambrano et al. 2001; Khan 2003; Kulhanek et al. 2011). Within south-east Australia, for example, C. carpio comprises the largest proportion of the ichthyobiomass in the continent’s largest river system – the Murray–Darling Basin (Gehrke et al. 1995). As a consequence, serious concerns about its threat to endemic freshwater species (Koehn 2004) have prompted several of the most recent investigations into its life history (e.g. Sivakumaran et al. 2003; Smith and Walker 2004; Brown et al. 2005). Other potential threats posed also include competition with indigenous species and the spread of diseases and parasites (Dudgeon et al. 2006). In South Africa, for example, Asian tapeworm Bothriocephalus acheilognathi is now widely distributed in seven river systems and has infected eight novel cyprinid hosts due to the translocation of infected by C. carpio from a centralized aquaculture facility (Stadtlander et al. 2011).
- Full Text:
- Authors: Winker, A Henning , Weyl, Olaf L F , Booth, Anthony J , Ellender, Bruce R
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124898 , vital:35708 , https://doi.10.1071/MF11054
- Description: Common carp (Cyprinus carpio) is one of the world’s most widely introduced and established freshwater fishes (Casal 2006). The species is considered to be one of the eight most invasive freshwater fishes (Lowe et al. 2000) and worldwide, it accounts for most of the records of successful establishments and adverse ecological effects (Casal 2006; Kulhanek et al. 2011). This invasive success suggests that feral C. carpio is equipped with a set of adaptable life history attributes that allow it to successfully colonise a wide range of habitats (Koehn 2004; Zambrano et al. 2006; Britton et al. 2007). Where feral C. carpio occurs in high densities, it is often perceived as an invasive pest species (Sivakumaran et al. 2003; Brown and Walker 2004; Koehn 2004) because it can have severe impacts on habitat heterogeneity and biodiversity by increasing water turbidity through its bottom feeding behaviour, increasing nutrient availability, decreasing benthic and macrophyte density and diversity, altering zooplankton assemblages and decreasing endemic fish abundance (Zambrano et al. 2001; Khan 2003; Kulhanek et al. 2011). Within south-east Australia, for example, C. carpio comprises the largest proportion of the ichthyobiomass in the continent’s largest river system – the Murray–Darling Basin (Gehrke et al. 1995). As a consequence, serious concerns about its threat to endemic freshwater species (Koehn 2004) have prompted several of the most recent investigations into its life history (e.g. Sivakumaran et al. 2003; Smith and Walker 2004; Brown et al. 2005). Other potential threats posed also include competition with indigenous species and the spread of diseases and parasites (Dudgeon et al. 2006). In South Africa, for example, Asian tapeworm Bothriocephalus acheilognathi is now widely distributed in seven river systems and has infected eight novel cyprinid hosts due to the translocation of infected by C. carpio from a centralized aquaculture facility (Stadtlander et al. 2011).
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MMORPG: Towards a Sustainable Livelihood Model for Africa and Beyond
- Mostert, André M, Kaschula, Russell H
- Authors: Mostert, André M , Kaschula, Russell H
- Date: 2011
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/175212 , vital:42553 , ISBN ViNOrg 2011 , https://link.springer.com/chapter/10.1007/978-3-642-31800-9_4
- Description: The burgeoning worlds of massively multiplayer online role-playing games (MMORPG) coupled with increasing access to the internet is opening a new paradigmatic window for a number of disciplines. Many of these have been slow to take up the challenges associated with this emergent framework, due, in no small measure, to the perception that work and play are mutually exclusive. The dominance of this dichotomy contributed to the slow uptake of the potential for these virtual worlds to be harnessed in the fields of education and employment. This reticence was due in no small measure to the technophobia that tends to characterise the adoption of new technologies within fields that have customarily eschewed an embrace.
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- Authors: Mostert, André M , Kaschula, Russell H
- Date: 2011
- Language: English
- Type: text , book
- Identifier: http://hdl.handle.net/10962/175212 , vital:42553 , ISBN ViNOrg 2011 , https://link.springer.com/chapter/10.1007/978-3-642-31800-9_4
- Description: The burgeoning worlds of massively multiplayer online role-playing games (MMORPG) coupled with increasing access to the internet is opening a new paradigmatic window for a number of disciplines. Many of these have been slow to take up the challenges associated with this emergent framework, due, in no small measure, to the perception that work and play are mutually exclusive. The dominance of this dichotomy contributed to the slow uptake of the potential for these virtual worlds to be harnessed in the fields of education and employment. This reticence was due in no small measure to the technophobia that tends to characterise the adoption of new technologies within fields that have customarily eschewed an embrace.
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Theiler’s murine encephalomyelitis virus infection induces a redistribution of heat shock proteins 70 and 90 in BHK-21 cells, and is inhibited by novobiocin and geldanamycin:
- Mutsvunguma, Lorraine Z, Moetlhoa, Boitumelo, Edkins, Adrienne L, Luke, Garry A, Blatch, Gregory L, Knox, Caroline M
- Authors: Mutsvunguma, Lorraine Z , Moetlhoa, Boitumelo , Edkins, Adrienne L , Luke, Garry A , Blatch, Gregory L , Knox, Caroline M
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165085 , vital:41207 , DOI: 10.1007/s12192-011-0262-x
- Description: Theiler’s murine encephalomyelitis virus (TMEV) is a positive-sense RNA virus belonging to the Cardiovirus genus in the family Picornaviridae. In addition to other host cellular factors and pathways, picornaviruses utilise heat shock proteins (Hsps) to facilitate their propagation in cells. This study investigated the localisation of Hsps 70 and 90 in TMEV-infected BHK-21 cells by indirect immunofluorescence and confocal microscopy. The effect of Hsp90 inhibitors novobiocin (Nov) and geldanamycin (GA) on the development of cytopathic effect (CPE) induced by infection was also examined. Hsp90 staining was uniformly distributed in the cytoplasm of uninfected cells but was found concentrated in the perinuclear region during late infection where it overlapped with the signal for non-structural protein 2C within the viral replication complex.
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- Authors: Mutsvunguma, Lorraine Z , Moetlhoa, Boitumelo , Edkins, Adrienne L , Luke, Garry A , Blatch, Gregory L , Knox, Caroline M
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/165085 , vital:41207 , DOI: 10.1007/s12192-011-0262-x
- Description: Theiler’s murine encephalomyelitis virus (TMEV) is a positive-sense RNA virus belonging to the Cardiovirus genus in the family Picornaviridae. In addition to other host cellular factors and pathways, picornaviruses utilise heat shock proteins (Hsps) to facilitate their propagation in cells. This study investigated the localisation of Hsps 70 and 90 in TMEV-infected BHK-21 cells by indirect immunofluorescence and confocal microscopy. The effect of Hsp90 inhibitors novobiocin (Nov) and geldanamycin (GA) on the development of cytopathic effect (CPE) induced by infection was also examined. Hsp90 staining was uniformly distributed in the cytoplasm of uninfected cells but was found concentrated in the perinuclear region during late infection where it overlapped with the signal for non-structural protein 2C within the viral replication complex.
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Water chemistry and effect of evapotranspiration on chemical sedimentation on the Mkuze River floodplain, South Africa:
- Humphries, M S, Kindness, A, Ellery, William F N, Hughes, J C
- Authors: Humphries, M S , Kindness, A , Ellery, William F N , Hughes, J C
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144376 , vital:38340 , https://doi.org/10.1016/j.jaridenv.2011.01.013
- Description: The Mkuze Wetland System, forming part of the iSimangaliso World Heritage Site, is South Africa’s largest freshwater wetland area and is known to act as a sink for naturally occurring solutes within the landscape. The chemistry of groundwater and porewater samples, collected from two transects on the Mkuze River floodplain, was investigated to identify processes involved in the control of solute concentrations. Results show that solutes in the groundwater become increasingly concentrated under the influence of evapotranspiration, resulting in the saturation, precipitation, and accumulation of less soluble compounds.
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- Authors: Humphries, M S , Kindness, A , Ellery, William F N , Hughes, J C
- Date: 2011
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144376 , vital:38340 , https://doi.org/10.1016/j.jaridenv.2011.01.013
- Description: The Mkuze Wetland System, forming part of the iSimangaliso World Heritage Site, is South Africa’s largest freshwater wetland area and is known to act as a sink for naturally occurring solutes within the landscape. The chemistry of groundwater and porewater samples, collected from two transects on the Mkuze River floodplain, was investigated to identify processes involved in the control of solute concentrations. Results show that solutes in the groundwater become increasingly concentrated under the influence of evapotranspiration, resulting in the saturation, precipitation, and accumulation of less soluble compounds.
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