Human, vector and parasite Hsp90 proteins: a comparative bioinformatics analysis
- Faya, Ngonidzashe, Penkler, David L, Tastan Bishop, Özlem
- Authors: Faya, Ngonidzashe , Penkler, David L , Tastan Bishop, Özlem
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148038 , vital:38704 , DOI: 10.1016/j.fob.2015.11.003
- Description: The treatment of protozoan parasitic diseases is challenging, and thus identification and analysis of new drug targets is important. Parasites survive within host organisms, and some need intermediate hosts to complete their life cycle. Changing host environment puts stress on parasites, and often adaptation is accompanied by the expression of large amounts of heat shock proteins (Hsps). Among Hsps, Hsp90 proteins play an important role in stress environments. Yet, there has been little computational research on Hsp90 proteins to analyze them comparatively as potential parasitic drug targets. Here, an attempt was made to gain detailed insights into the differences between host, vector and parasitic Hsp90 proteins by large-scale bioinformatics analysis.
- Full Text:
- Date Issued: 2015
- Authors: Faya, Ngonidzashe , Penkler, David L , Tastan Bishop, Özlem
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148038 , vital:38704 , DOI: 10.1016/j.fob.2015.11.003
- Description: The treatment of protozoan parasitic diseases is challenging, and thus identification and analysis of new drug targets is important. Parasites survive within host organisms, and some need intermediate hosts to complete their life cycle. Changing host environment puts stress on parasites, and often adaptation is accompanied by the expression of large amounts of heat shock proteins (Hsps). Among Hsps, Hsp90 proteins play an important role in stress environments. Yet, there has been little computational research on Hsp90 proteins to analyze them comparatively as potential parasitic drug targets. Here, an attempt was made to gain detailed insights into the differences between host, vector and parasitic Hsp90 proteins by large-scale bioinformatics analysis.
- Full Text:
- Date Issued: 2015
Maximum firepower: Vale van der Merwe, an emergent ceramic artist at Starways Arts, Hogsback, Eastern Cape, South Africa
- Authors: Steele, John
- Date: 2015
- Language: English
- Type: text , Article
- Identifier: http://hdl.handle.net/11260/979 , vital:30078
- Description: Vale van der Merwe has been working as a ceramic artist for the past five years, and in that time has developed a remarkably diverse repertoire of both thrown and handbuilt works. These include rapidly thrown utilityware as well as carefully conceived sculptural works that engage with ideas rather than primarily with function. She also makes full use of opportunities offered by high-temperature woodburn firings, and despite works collapsing while being made, breaking while being carried to the kiln and slumping during firing, she has used such occasions as opportunities for learning rather than despondency. Van der Merwe is also an actively hands-on ceramic artist who engages with all levels of tasks associated with studio ceramics in a village setting, so has found herself, for example, both creating a new chimney for the kiln, and simultaneously leading discussion around concepts for new collaborative exhibitions. There is a seriousness of intent combined with infectious confidence evident in both her daily presence and ceramics, and it is hoped that she will develop her repertoire and thinkings even further in forthcoming years.
- Full Text:
- Date Issued: 2015
- Authors: Steele, John
- Date: 2015
- Language: English
- Type: text , Article
- Identifier: http://hdl.handle.net/11260/979 , vital:30078
- Description: Vale van der Merwe has been working as a ceramic artist for the past five years, and in that time has developed a remarkably diverse repertoire of both thrown and handbuilt works. These include rapidly thrown utilityware as well as carefully conceived sculptural works that engage with ideas rather than primarily with function. She also makes full use of opportunities offered by high-temperature woodburn firings, and despite works collapsing while being made, breaking while being carried to the kiln and slumping during firing, she has used such occasions as opportunities for learning rather than despondency. Van der Merwe is also an actively hands-on ceramic artist who engages with all levels of tasks associated with studio ceramics in a village setting, so has found herself, for example, both creating a new chimney for the kiln, and simultaneously leading discussion around concepts for new collaborative exhibitions. There is a seriousness of intent combined with infectious confidence evident in both her daily presence and ceramics, and it is hoped that she will develop her repertoire and thinkings even further in forthcoming years.
- Full Text:
- Date Issued: 2015
Multiple roles of non-timber forest products in ecologies, economies and livelihoods
- Authors: Shackleton, Charlie M
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/433970 , vital:73015 , ISBN 9781315818290 , https://doi.org/10.4324/9781315818290
- Description: The global climate models agree fairly well with each other for the next 20 years or so, with a predicted additional increase of 0.3-0.7oC in global mean surface air temperature, giving a total warming of 1.0-1.5oC (somewhat higher over land) (IPCC, 2013). Globally, rainfall is expected to increase, but some regions (such as most of the Mediterranean) will get drier and confidence in detailed rainfall predictions in most parts of the world is low. In the longer term, predictions vary greatly even for temperatures, depending on the choice of climate model and the assumptions made about future greenhouse gas emissions and carbon-cycle feedbacks. Temperatures over land are expected to increase by 3-6oC by 2100, compared with 2000, but the range of plausible values is considerably wider.
- Full Text:
- Date Issued: 2015
- Authors: Shackleton, Charlie M
- Date: 2015
- Subjects: To be catalogued
- Language: English
- Type: text , book chapter
- Identifier: http://hdl.handle.net/10962/433970 , vital:73015 , ISBN 9781315818290 , https://doi.org/10.4324/9781315818290
- Description: The global climate models agree fairly well with each other for the next 20 years or so, with a predicted additional increase of 0.3-0.7oC in global mean surface air temperature, giving a total warming of 1.0-1.5oC (somewhat higher over land) (IPCC, 2013). Globally, rainfall is expected to increase, but some regions (such as most of the Mediterranean) will get drier and confidence in detailed rainfall predictions in most parts of the world is low. In the longer term, predictions vary greatly even for temperatures, depending on the choice of climate model and the assumptions made about future greenhouse gas emissions and carbon-cycle feedbacks. Temperatures over land are expected to increase by 3-6oC by 2100, compared with 2000, but the range of plausible values is considerably wider.
- Full Text:
- Date Issued: 2015
Optimisation of the emulsion liquid membrane composition and demulsification for rhodium extraction
- Moyo, Francis, Tandlich, Roman
- Authors: Moyo, Francis , Tandlich, Roman
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76743 , vital:30626 , https://doi.org/10.1515/lwr-2015-0002
- Description: This study was aimed at designing an optimised emulsion liquid membrane (ELM) for the extraction of rhodium from precious metal refinery wastewaters. The demulsification process and the structure of the optimised ELM are reported on. Two optimised ELMs were prepared. The first one contained a 30 % solution of toluene in kerosene as diluent with the following concentrations of the ELM components: 30.000 g/L (w/v) polyisobutylene, 10.870 g/L (m/v) of trioctyl amine and 51.001 g/L (m/v) of SPAN 80. The second ELM contained the same diluent, but the concentrations of the other ELM components in it were as follows: 20.000 g/l of polyisobutylene, 10.268 g/l trioctyl amine and 50.024 g/l of SPAN 80. The stripping phase was the same in both optimised ELMs, namely a 2 M solution of HNO3. The stripping phase and the diluent solution were mixed together in ratios of 1:1 and 2:1, respectively. Two methods were used to characterise the microdroplet diameters, i.e. optical microscopy and the Zeta-sizer. For the t-test, the p-value of 0.3018 at 5 % level of significance showed that there was statistically no significant difference in the mean micro-droplet size for 1:2 ELMs containing 20 g/l and 30 g/l of polyisobutylene after 40 minutes of emulsification. The best demulsification results were obtained using the chemical demulsification with polyethylene glycol with molecular weight of 400 g/mol (PEG 400) at 50 ± 1 °C for 24 hours. However, significant carryover of toluene, trioctyl amine and polyethylene glycol into the aqueous phase was observed.
- Full Text:
- Date Issued: 2015
- Authors: Moyo, Francis , Tandlich, Roman
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/76743 , vital:30626 , https://doi.org/10.1515/lwr-2015-0002
- Description: This study was aimed at designing an optimised emulsion liquid membrane (ELM) for the extraction of rhodium from precious metal refinery wastewaters. The demulsification process and the structure of the optimised ELM are reported on. Two optimised ELMs were prepared. The first one contained a 30 % solution of toluene in kerosene as diluent with the following concentrations of the ELM components: 30.000 g/L (w/v) polyisobutylene, 10.870 g/L (m/v) of trioctyl amine and 51.001 g/L (m/v) of SPAN 80. The second ELM contained the same diluent, but the concentrations of the other ELM components in it were as follows: 20.000 g/l of polyisobutylene, 10.268 g/l trioctyl amine and 50.024 g/l of SPAN 80. The stripping phase was the same in both optimised ELMs, namely a 2 M solution of HNO3. The stripping phase and the diluent solution were mixed together in ratios of 1:1 and 2:1, respectively. Two methods were used to characterise the microdroplet diameters, i.e. optical microscopy and the Zeta-sizer. For the t-test, the p-value of 0.3018 at 5 % level of significance showed that there was statistically no significant difference in the mean micro-droplet size for 1:2 ELMs containing 20 g/l and 30 g/l of polyisobutylene after 40 minutes of emulsification. The best demulsification results were obtained using the chemical demulsification with polyethylene glycol with molecular weight of 400 g/mol (PEG 400) at 50 ± 1 °C for 24 hours. However, significant carryover of toluene, trioctyl amine and polyethylene glycol into the aqueous phase was observed.
- Full Text:
- Date Issued: 2015
Polyurethane composite adsorbent using solid phase extraction method for preconcentration of metal ion from aqueous solution
- Olorundare, O F, Msagati, T A M, Okonkwo, J O, Krause, Rui W M, Mamba, Bhekie B
- Authors: Olorundare, O F , Msagati, T A M , Okonkwo, J O , Krause, Rui W M , Mamba, Bhekie B
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125386 , vital:35778 , https://doi.org/10.1007/s13762-014-0645-5
- Description: Polyurethane composite adsorbent polymeric material was prepared and investigated for selected solid-phase extraction for metal ions, prior to its determination by inductively coupled plasma optical emission spectrometry. The surface characterisation was done using Fourier transform infrared spectroscopy. The separation and preconcentration conditions of the analytes investigated includes influence of pH, sample loading flow rate, elution flow rate, type and concentration of eluents. The optimum pH for the highest efficient recoveries for all metal ions, which ranged from 70 to 85 %, is pH 7. The metal ions were quantitatively eluted with 5 mL of 2 mol/L HNO3. Common coexisting ions did not interfere with the separation. The percentage recovery of the metal ions ranged between 70 and 89 %, while the results for the limit of detection and limit of quantification ranged from 0.249 to 0.256 and 0.831 to 0.855, respectively. The experimental tests showed good preconcentration results of trace levels of metal ions using synthesised polyurethane polymer adsorbent composite.
- Full Text:
- Date Issued: 2015
- Authors: Olorundare, O F , Msagati, T A M , Okonkwo, J O , Krause, Rui W M , Mamba, Bhekie B
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125386 , vital:35778 , https://doi.org/10.1007/s13762-014-0645-5
- Description: Polyurethane composite adsorbent polymeric material was prepared and investigated for selected solid-phase extraction for metal ions, prior to its determination by inductively coupled plasma optical emission spectrometry. The surface characterisation was done using Fourier transform infrared spectroscopy. The separation and preconcentration conditions of the analytes investigated includes influence of pH, sample loading flow rate, elution flow rate, type and concentration of eluents. The optimum pH for the highest efficient recoveries for all metal ions, which ranged from 70 to 85 %, is pH 7. The metal ions were quantitatively eluted with 5 mL of 2 mol/L HNO3. Common coexisting ions did not interfere with the separation. The percentage recovery of the metal ions ranged between 70 and 89 %, while the results for the limit of detection and limit of quantification ranged from 0.249 to 0.256 and 0.831 to 0.855, respectively. The experimental tests showed good preconcentration results of trace levels of metal ions using synthesised polyurethane polymer adsorbent composite.
- Full Text:
- Date Issued: 2015
Climate change effects on animal and plant phylogenetic diversity in southern Africa
- Pio, Dorothea V, Engler, Robin, Linder, H Peter, Monadjem, Ara, Cotterill, Fenton P D, Taylor, Peter J, Schoeman, M Corrie, Price, Benjamin W, Villet, Martin H, Eick, Geeta, Salamin, Nicholas, Guisan, Antoine
- Authors: Pio, Dorothea V , Engler, Robin , Linder, H Peter , Monadjem, Ara , Cotterill, Fenton P D , Taylor, Peter J , Schoeman, M Corrie , Price, Benjamin W , Villet, Martin H , Eick, Geeta , Salamin, Nicholas , Guisan, Antoine
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441874 , vital:73930 , https://doi.org/10.1111/gcb.12524
- Description: Much attention has been paid to the effects of climate change on species' range reductions and extinctions. There is however surprisingly little information on how climate change driven threat may impact the tree of life and result in loss of phylogenetic diversity (PD). Some plant families and mammalian orders reveal nonrandom extinction patterns, but many other plant families do not. Do these discrepancies reflect different speciation histories and does climate induced extinction result in the same discrepancies among different groups? Answers to these questions require representative taxon sampling. Here, we combine phylogenetic analyses, species distribution modeling, and climate change projections on two of the largest plant families in the Cape Floristic Region (Proteaceae and Restionaceae), as well as the second most diverse mammalian order in Southern Africa (Chiroptera), and an herbivorous insect genus (Platypleura) in the family Cicadidae to answer this question. We model current and future species distributions to assess species threat levels over the next 70 years, and then compare projected with random PD survival. Results for these animal and plant clades reveal congruence. PD losses are not significantly higher under predicted extinction than under random extinction simulations. So far the evidence suggests that focusing resources on climate threatened species alone may not result in disproportionate benefits for the preservation of evolutionary history.
- Full Text:
- Date Issued: 2014
- Authors: Pio, Dorothea V , Engler, Robin , Linder, H Peter , Monadjem, Ara , Cotterill, Fenton P D , Taylor, Peter J , Schoeman, M Corrie , Price, Benjamin W , Villet, Martin H , Eick, Geeta , Salamin, Nicholas , Guisan, Antoine
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441874 , vital:73930 , https://doi.org/10.1111/gcb.12524
- Description: Much attention has been paid to the effects of climate change on species' range reductions and extinctions. There is however surprisingly little information on how climate change driven threat may impact the tree of life and result in loss of phylogenetic diversity (PD). Some plant families and mammalian orders reveal nonrandom extinction patterns, but many other plant families do not. Do these discrepancies reflect different speciation histories and does climate induced extinction result in the same discrepancies among different groups? Answers to these questions require representative taxon sampling. Here, we combine phylogenetic analyses, species distribution modeling, and climate change projections on two of the largest plant families in the Cape Floristic Region (Proteaceae and Restionaceae), as well as the second most diverse mammalian order in Southern Africa (Chiroptera), and an herbivorous insect genus (Platypleura) in the family Cicadidae to answer this question. We model current and future species distributions to assess species threat levels over the next 70 years, and then compare projected with random PD survival. Results for these animal and plant clades reveal congruence. PD losses are not significantly higher under predicted extinction than under random extinction simulations. So far the evidence suggests that focusing resources on climate threatened species alone may not result in disproportionate benefits for the preservation of evolutionary history.
- Full Text:
- Date Issued: 2014
Comparison between base metals and platinum group metals in nitrogen, M codoped TiO 2 (M= Fe, Cu, Pd, Os) for photocatalytic removal of an organic dye in water
- Kuvarega, Alex T, Mamba, Bhekie B, Krause, Rui W M
- Authors: Kuvarega, Alex T , Mamba, Bhekie B , Krause, Rui W M
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125129 , vital:35734 , https://doi.org/10.1155/2014/962102
- Description: The photocatalytic performance of a number of nonmetal and metal codoped TiO2 for the degradation of eosin yellow under simulated solar radiation was investigated. The synthesised materials were characterised by FTIR, Raman spectroscopy, XRD, DRUV-Vis, SEM, and TEM.The N, metal codoped TiO2 containing 0.5 wt.% of the metal consisted mainly of the anatase phase, with a particle size range of 15–28 nm. The particles were largely spherical and shifted the absorption edge well into the visible region. Band gap reduction was more pronounced for the N, PGM codoped TiO2 compared to N, base metal codoped samples. Codoping led to an enhancement in the photocatalytic activity of the materials for the degradation of eosin yellow. N, Pd codoped TiO2 was the most effective photocatalyst (99.9% dye removal) while N, Cu codoped TiO2 showed the least activity (25.5% removal). The mechanism for the photocatalytic enhancement was proposed on the basis of formation of an electron deficient Schottky barrier at the semiconductor-metal interface, which acts as an electron sink and thus retards electron-hole recombination. It was shown that the ability of the photocatalyst to degrade the dye depends on the nature and type of the metal dopant in the codoped TiO2 system.
- Full Text:
- Date Issued: 2014
- Authors: Kuvarega, Alex T , Mamba, Bhekie B , Krause, Rui W M
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125129 , vital:35734 , https://doi.org/10.1155/2014/962102
- Description: The photocatalytic performance of a number of nonmetal and metal codoped TiO2 for the degradation of eosin yellow under simulated solar radiation was investigated. The synthesised materials were characterised by FTIR, Raman spectroscopy, XRD, DRUV-Vis, SEM, and TEM.The N, metal codoped TiO2 containing 0.5 wt.% of the metal consisted mainly of the anatase phase, with a particle size range of 15–28 nm. The particles were largely spherical and shifted the absorption edge well into the visible region. Band gap reduction was more pronounced for the N, PGM codoped TiO2 compared to N, base metal codoped samples. Codoping led to an enhancement in the photocatalytic activity of the materials for the degradation of eosin yellow. N, Pd codoped TiO2 was the most effective photocatalyst (99.9% dye removal) while N, Cu codoped TiO2 showed the least activity (25.5% removal). The mechanism for the photocatalytic enhancement was proposed on the basis of formation of an electron deficient Schottky barrier at the semiconductor-metal interface, which acts as an electron sink and thus retards electron-hole recombination. It was shown that the ability of the photocatalyst to degrade the dye depends on the nature and type of the metal dopant in the codoped TiO2 system.
- Full Text:
- Date Issued: 2014
Mini-review on the use of liquid membranes in the extraction of platinum group metals from mining and metal refinery wastewaters/side-streams
- Moyo, Francis, Tandlich, Roman
- Authors: Moyo, Francis , Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75960 , vital:30487 , DOI: 10.4172/2155-6199.1000228
- Description: The current mini-review focuses on the use of liquid membranes in the platinum group metal (PGM/PGMs) extraction from various types of wastewaters to prevent environmental pollution; and for the metal recovery to address the scarcity of the PGMs in the industrial cycles. The bulk liquid membranes have been used to the extracted PGMs from the (acidic) aqueous media with recoveries of up to 96.3 ± 2.5% of the original PGM amount. The extraction time generally ranges from 2 to 24 hours. The bulk membrane liquid in the PGM extraction will depend on the covalent structure of the extractant, the feed phase PGM concentration and the complex of the PGM in question that is actually extracted from the aqueous environment. The advantages of this type of liquid membrane include its operational simplicity, but the disadvantages include limited possibility to improve the extraction performance of the system. Literature data are encouraging as they indicate that extraction of PGMs from mining and metal-refinery side-streams does not suffer from interference from metal contaminants that are commonly found in the mining and metal refinery side-streams, e.g. iron. Thus further research should focus on the application of ELM to extraction of PGMs from said wastewaters and major research drive should focus on the use of the Taylorvortex column and the non-Newtonian ELMs. With the supported liquid membranes, 78-82% of the original PGM content could be recovered from model side-streams. The selectivity of the extraction for individual PGMs can be controlled by the extractant used.
- Full Text:
- Date Issued: 2014
- Authors: Moyo, Francis , Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75960 , vital:30487 , DOI: 10.4172/2155-6199.1000228
- Description: The current mini-review focuses on the use of liquid membranes in the platinum group metal (PGM/PGMs) extraction from various types of wastewaters to prevent environmental pollution; and for the metal recovery to address the scarcity of the PGMs in the industrial cycles. The bulk liquid membranes have been used to the extracted PGMs from the (acidic) aqueous media with recoveries of up to 96.3 ± 2.5% of the original PGM amount. The extraction time generally ranges from 2 to 24 hours. The bulk membrane liquid in the PGM extraction will depend on the covalent structure of the extractant, the feed phase PGM concentration and the complex of the PGM in question that is actually extracted from the aqueous environment. The advantages of this type of liquid membrane include its operational simplicity, but the disadvantages include limited possibility to improve the extraction performance of the system. Literature data are encouraging as they indicate that extraction of PGMs from mining and metal-refinery side-streams does not suffer from interference from metal contaminants that are commonly found in the mining and metal refinery side-streams, e.g. iron. Thus further research should focus on the application of ELM to extraction of PGMs from said wastewaters and major research drive should focus on the use of the Taylorvortex column and the non-Newtonian ELMs. With the supported liquid membranes, 78-82% of the original PGM content could be recovered from model side-streams. The selectivity of the extraction for individual PGMs can be controlled by the extractant used.
- Full Text:
- Date Issued: 2014
Occurrence of larval fishes in a rocky shore-associated nursery area in temperate South Africa, with emphasis on temperature-related growth in dominant Sparidae
- Strydom, Nadine A, Booth, Anthony J, McLachlan, A
- Authors: Strydom, Nadine A , Booth, Anthony J , McLachlan, A
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125342 , vital:35774 , https://doi.10.2989/1814232X.2014.899269
- Description: Larval fishes were studied in Shark Bay on the warm, temperate south-east coast of South Africa. The bay is a small, shallow, subtidal area associated with a rocky shore. Sampling took place fortnightly for a period of one year (September 2004–August 2005) to assess composition, abundance and growth of fishes. The objectives of the study were to assess the extent of use of this habitat type by larvae throughout the year and to ascertain what temperature advantages this relatively warm habitat could have on growth of dominant species. A total of 10 fish families, represented by 16 taxa, was collected using a specially modified beach seine net (mesh aperture 500 μm). Shark Bay was utilised extensively by Diplodus capensis and Sarpa salpa and to a lesser extent by Clinus supercilious, Liza spp. and Mugil cephalus. Mean catch per unit effort (CPUE) of larvae was high (>500 larvae per net haul), peaking at ~7 500 larvae in a single haul that consisted mostly of postflexion-stage Sparidae. There was a weak, negative correlation (−0.24) between temperature and overall CPUE, which reflected either the seasonality or protracted nature of spawning by the species occurring in the bay. There was no significant difference in CPUE between the moon phases sampled on the spring tides in this study. Shark Bay was dominated by postflexionstage larvae, consisting in particular of species common to tide pools during the juvenile stage. Certain species were sampled for only short periods during the year. The year-round occurrence and high abundance of the two dominant species indicate that Shark Bay represents an important nursery habitat for the completion of the larval phase. These species exhibited exponential growth that lagged behind small increases in temperature, highlighting the importance of access to shallow, warm habitat that allows larval growth to increase, leading to earlier settlement into juvenile habitat and thereby reducing the pelagic larval duration.
- Full Text:
- Date Issued: 2014
- Authors: Strydom, Nadine A , Booth, Anthony J , McLachlan, A
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125342 , vital:35774 , https://doi.10.2989/1814232X.2014.899269
- Description: Larval fishes were studied in Shark Bay on the warm, temperate south-east coast of South Africa. The bay is a small, shallow, subtidal area associated with a rocky shore. Sampling took place fortnightly for a period of one year (September 2004–August 2005) to assess composition, abundance and growth of fishes. The objectives of the study were to assess the extent of use of this habitat type by larvae throughout the year and to ascertain what temperature advantages this relatively warm habitat could have on growth of dominant species. A total of 10 fish families, represented by 16 taxa, was collected using a specially modified beach seine net (mesh aperture 500 μm). Shark Bay was utilised extensively by Diplodus capensis and Sarpa salpa and to a lesser extent by Clinus supercilious, Liza spp. and Mugil cephalus. Mean catch per unit effort (CPUE) of larvae was high (>500 larvae per net haul), peaking at ~7 500 larvae in a single haul that consisted mostly of postflexion-stage Sparidae. There was a weak, negative correlation (−0.24) between temperature and overall CPUE, which reflected either the seasonality or protracted nature of spawning by the species occurring in the bay. There was no significant difference in CPUE between the moon phases sampled on the spring tides in this study. Shark Bay was dominated by postflexionstage larvae, consisting in particular of species common to tide pools during the juvenile stage. Certain species were sampled for only short periods during the year. The year-round occurrence and high abundance of the two dominant species indicate that Shark Bay represents an important nursery habitat for the completion of the larval phase. These species exhibited exponential growth that lagged behind small increases in temperature, highlighting the importance of access to shallow, warm habitat that allows larval growth to increase, leading to earlier settlement into juvenile habitat and thereby reducing the pelagic larval duration.
- Full Text:
- Date Issued: 2014
Ocean warming affects the distribution and abundance of resident fishes by changing their reproductive scope
- Potts, Warren M, Booth, Anthony J, Richardson, Timothy J, Sauer, Warwick H H
- Authors: Potts, Warren M , Booth, Anthony J , Richardson, Timothy J , Sauer, Warwick H H
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125352 , vital:35775 , https://doi.10.1007/s11160-013-9329-3
- Description: With ocean warming predicted globally, one of the mechanisms driving distributional shifts and changes in the abundance of resident fishes is reproductive output. The relationship between sea surface temperature and the reproductive activity of a eurythermic, resident coastal species, blacktail seabream Diplodus sargus capensis, was examined in the ‘‘ocean warming’’ hotspot of the northern Benguela. Reproductive activity was found to be restricted to periods when the water temperature dropped below 20 _C. A metadata analysis conducted on the D. sargus sub-species complex similarly showed that reproductive activity was restricted to temperatures between 15 and 20 _C, regardless of the range in ambient water temperature. Based on these findings and using satellite derived SST information, we examined D. s. capensis’s total and seasonal ‘‘reproductive scope’’ that is defined as either the area suitable for spawning each year or the duration of its potential spawning season at a fixed geographical locality, respectively. Trends were examined over the last three decades. Reproductive scope by area was found to be shrinking at a rate of 7 % per decade in southern Angola and expanding at a rate of 6 % per decade in northern Namibia. Reproductive scope by season decreased by 1.05 months per decade in Namibe, southern Angola and increased by 0.76 months per decade in Hentiesbaai, northern Namibia. Changes in reproductive scope may be a driving mechanism of distributional shifts in resident fishes, although the rate of the shifts is likely to be slow. More importantly, changes in reproductive scope will not be uniform throughout fish distributions and will most likely result in heterogeneous variations in fish abundance.
- Full Text:
- Date Issued: 2014
- Authors: Potts, Warren M , Booth, Anthony J , Richardson, Timothy J , Sauer, Warwick H H
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125352 , vital:35775 , https://doi.10.1007/s11160-013-9329-3
- Description: With ocean warming predicted globally, one of the mechanisms driving distributional shifts and changes in the abundance of resident fishes is reproductive output. The relationship between sea surface temperature and the reproductive activity of a eurythermic, resident coastal species, blacktail seabream Diplodus sargus capensis, was examined in the ‘‘ocean warming’’ hotspot of the northern Benguela. Reproductive activity was found to be restricted to periods when the water temperature dropped below 20 _C. A metadata analysis conducted on the D. sargus sub-species complex similarly showed that reproductive activity was restricted to temperatures between 15 and 20 _C, regardless of the range in ambient water temperature. Based on these findings and using satellite derived SST information, we examined D. s. capensis’s total and seasonal ‘‘reproductive scope’’ that is defined as either the area suitable for spawning each year or the duration of its potential spawning season at a fixed geographical locality, respectively. Trends were examined over the last three decades. Reproductive scope by area was found to be shrinking at a rate of 7 % per decade in southern Angola and expanding at a rate of 6 % per decade in northern Namibia. Reproductive scope by season decreased by 1.05 months per decade in Namibe, southern Angola and increased by 0.76 months per decade in Hentiesbaai, northern Namibia. Changes in reproductive scope may be a driving mechanism of distributional shifts in resident fishes, although the rate of the shifts is likely to be slow. More importantly, changes in reproductive scope will not be uniform throughout fish distributions and will most likely result in heterogeneous variations in fish abundance.
- Full Text:
- Date Issued: 2014
Residency patterns and migration dynamics of adult bull sharks (Carcharhinus leucas) on the east coast of southern Africa:
- Daly, Ryan, Smale, Malcolm J, Cowley, Paul D, Froneman, P William
- Authors: Daly, Ryan , Smale, Malcolm J , Cowley, Paul D , Froneman, P William
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/143235 , vital:38213 , doi:10.1371/journal.pone.0109357
- Description: Bull sharks (Carcharhinus leucas) are globally distributed top predators that play an important ecological role within coastal marine communities. However, little is known about the spatial and temporal scales of their habitat use and associated ecological role. In this study, we employed passive acoustic telemetry to investigate the residency patterns and migration dynamics of 18 adult bull sharks (195–283 cm total length) tagged in southern Mozambique for a period of between 10 and 22 months. The majority of sharks (n = 16) exhibited temporally and spatially variable residency patterns interspersed with migration events. Ten individuals undertook coastal migrations that ranged between 433 and 709 km (mean = 533 km) with eight of these sharks returning to the study site.
- Full Text:
- Date Issued: 2014
- Authors: Daly, Ryan , Smale, Malcolm J , Cowley, Paul D , Froneman, P William
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/143235 , vital:38213 , doi:10.1371/journal.pone.0109357
- Description: Bull sharks (Carcharhinus leucas) are globally distributed top predators that play an important ecological role within coastal marine communities. However, little is known about the spatial and temporal scales of their habitat use and associated ecological role. In this study, we employed passive acoustic telemetry to investigate the residency patterns and migration dynamics of 18 adult bull sharks (195–283 cm total length) tagged in southern Mozambique for a period of between 10 and 22 months. The majority of sharks (n = 16) exhibited temporally and spatially variable residency patterns interspersed with migration events. Ten individuals undertook coastal migrations that ranged between 433 and 709 km (mean = 533 km) with eight of these sharks returning to the study site.
- Full Text:
- Date Issued: 2014
The (in)significance of the common law? Constitutional interpretation and the Mansingh judgments
- Authors: Krüger, Rósaan
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68900 , vital:29337 , https://hdl.handle.net/10520/EJC155168
- Description: Publisher version , The law reports abound with case law on the interpretation of the provisions in the Bill of Rights. Cases on the interpretation of constitutional provisions that fall outside of the Bill of Rights are, by contrast, few and far between. (A few prominent examples are S v Mhlungu 1995 (3) SA 867 (CC); President of the Republic of South Africa v South African Rugby Football Union 2000 (1) SA 1 (CC) ('SARFU'); Matatiele Municipality v President of the Republic of South Africa 2006 (5) SA 47 (CC); Doctors for Life International v Speaker of the National Assembly 2006 (6) SA 416 (CC); Merafong Demarcation Forum v President of the Republic of South Africa 2008 (5) SA171 (CC); Chonco v President of the Republic of South Africa 2010 (6) BCLR 511 (CC); Albutt v Centre for the Study of Violence and Reconciliation 2010 (3) SA 293 (CC).) Mansingh's April 2011 application to the North Gauteng High Court was one of these unusual cases.
- Full Text: false
- Date Issued: 2014
- Authors: Krüger, Rósaan
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/68900 , vital:29337 , https://hdl.handle.net/10520/EJC155168
- Description: Publisher version , The law reports abound with case law on the interpretation of the provisions in the Bill of Rights. Cases on the interpretation of constitutional provisions that fall outside of the Bill of Rights are, by contrast, few and far between. (A few prominent examples are S v Mhlungu 1995 (3) SA 867 (CC); President of the Republic of South Africa v South African Rugby Football Union 2000 (1) SA 1 (CC) ('SARFU'); Matatiele Municipality v President of the Republic of South Africa 2006 (5) SA 47 (CC); Doctors for Life International v Speaker of the National Assembly 2006 (6) SA 416 (CC); Merafong Demarcation Forum v President of the Republic of South Africa 2008 (5) SA171 (CC); Chonco v President of the Republic of South Africa 2010 (6) BCLR 511 (CC); Albutt v Centre for the Study of Violence and Reconciliation 2010 (3) SA 293 (CC).) Mansingh's April 2011 application to the North Gauteng High Court was one of these unusual cases.
- Full Text: false
- Date Issued: 2014
The relationship between double taxation agreements and the provisions of the South African Income Tax Act
- Authors: Stack, Elizabeth M
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: Article
- Identifier: vital:21102 , http://hdl.handle.net/10962/6384 , http://journals.co.za/content/jefs/7/2/EJC157823
- Description: This article investigates the legal status of Double Taxation Agreements, and the relationship between Double Taxation Agreements, which are concluded in terms of section 108 of the Income Tax Act, and the provisions of the Income Tax Act (taking into account the provisions of the Constitution, and the national and international rules for the interpretation of statutes). An important conclusion reached was that as the Vienna Convention on the Law of Treaties represents customary international law and as such forms part of South African law, the principles contained in the treaty should be taken into account when interpreting South African legislation (including Double Taxation Agreements).The final conclusion of the research was that Double Taxation Agreements have a dual nature – forming part of domestic legislation and being classified as international agreements. The provisions of the Double Taxation Agreement should be taken as overriding any conflicting legislation in the Income Tax Act.
- Full Text:
- Date Issued: 2014
- Authors: Stack, Elizabeth M
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: Article
- Identifier: vital:21102 , http://hdl.handle.net/10962/6384 , http://journals.co.za/content/jefs/7/2/EJC157823
- Description: This article investigates the legal status of Double Taxation Agreements, and the relationship between Double Taxation Agreements, which are concluded in terms of section 108 of the Income Tax Act, and the provisions of the Income Tax Act (taking into account the provisions of the Constitution, and the national and international rules for the interpretation of statutes). An important conclusion reached was that as the Vienna Convention on the Law of Treaties represents customary international law and as such forms part of South African law, the principles contained in the treaty should be taken into account when interpreting South African legislation (including Double Taxation Agreements).The final conclusion of the research was that Double Taxation Agreements have a dual nature – forming part of domestic legislation and being classified as international agreements. The provisions of the Double Taxation Agreement should be taken as overriding any conflicting legislation in the Income Tax Act.
- Full Text:
- Date Issued: 2014
‘Unnatural’,‘un-African’and ‘ungodly’: homophobic discourse in democratic South Africa
- Vincent, Louise, Howell, Simon
- Authors: Vincent, Louise , Howell, Simon
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141570 , vital:37986 , DOI: 10.1177/1363460714524766
- Description: On 28 November 2006, South Africa’s legislature passed the Civil Union Act (No. 17, 2006), which legalised same-sex marriages or civil partnerships. While South Africa was fifth in the world to recognise the right of people of the same sex to marry, the country is by no means free of homophobic attitudes. However, we argue that an examination of the discourses embedded in the public discussion of gay marriage shows that the post-1994 period has not simply been a case of homophobia as usual. The altered context has given rise to the need for new ways of homophobic discourse to position itself. The rights enshrined in the Constitution represent a powerful set of ideas about the distinction between the democratic state and its apartheid predecessor. These ideas provide the dominant framework for political debate in the current context and it is therefore within this overarching framework that anti-gay sentiments must find a way to express themselves that has legitimacy. Our finding is that the reinscription of homophobia in an era of the ascendancy of human rights discourse has been chiefly in terms of three potent legitimising tropes – homosexuality as ‘unAfrican’, ‘unGodly’, and ‘unnatural’. It is only by deepening our understanding of the terms in which homophobia is being articulated in the current period that we can develop effective counter discourses.
- Full Text:
- Date Issued: 2014
- Authors: Vincent, Louise , Howell, Simon
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/141570 , vital:37986 , DOI: 10.1177/1363460714524766
- Description: On 28 November 2006, South Africa’s legislature passed the Civil Union Act (No. 17, 2006), which legalised same-sex marriages or civil partnerships. While South Africa was fifth in the world to recognise the right of people of the same sex to marry, the country is by no means free of homophobic attitudes. However, we argue that an examination of the discourses embedded in the public discussion of gay marriage shows that the post-1994 period has not simply been a case of homophobia as usual. The altered context has given rise to the need for new ways of homophobic discourse to position itself. The rights enshrined in the Constitution represent a powerful set of ideas about the distinction between the democratic state and its apartheid predecessor. These ideas provide the dominant framework for political debate in the current context and it is therefore within this overarching framework that anti-gay sentiments must find a way to express themselves that has legitimacy. Our finding is that the reinscription of homophobia in an era of the ascendancy of human rights discourse has been chiefly in terms of three potent legitimising tropes – homosexuality as ‘unAfrican’, ‘unGodly’, and ‘unnatural’. It is only by deepening our understanding of the terms in which homophobia is being articulated in the current period that we can develop effective counter discourses.
- Full Text:
- Date Issued: 2014
Rhodes council imbizo input
- Authors: Badat, Saleem
- Date: 2013-06-12
- Language: English
- Type: Text
- Identifier: vital:7927 , http://hdl.handle.net/10962/d1016477
- Full Text:
- Date Issued: 2013-06-12
- Authors: Badat, Saleem
- Date: 2013-06-12
- Language: English
- Type: Text
- Identifier: vital:7927 , http://hdl.handle.net/10962/d1016477
- Full Text:
- Date Issued: 2013-06-12
Activism for social change
- Authors: Badat, Saleem
- Date: 2013-03-22
- Language: English
- Type: Text
- Identifier: vital:7906 , http://hdl.handle.net/10962/d1016456
- Full Text:
- Date Issued: 2013-03-22
- Authors: Badat, Saleem
- Date: 2013-03-22
- Language: English
- Type: Text
- Identifier: vital:7906 , http://hdl.handle.net/10962/d1016456
- Full Text:
- Date Issued: 2013-03-22
Rhodes: who we are, where we are today and where we want to be in 2020
- Authors: Badat, Saleem
- Date: 2013-01-28
- Language: English
- Type: Text
- Identifier: vital:7929 , http://hdl.handle.net/10962/d1016479
- Full Text:
- Date Issued: 2013-01-28
- Authors: Badat, Saleem
- Date: 2013-01-28
- Language: English
- Type: Text
- Identifier: vital:7929 , http://hdl.handle.net/10962/d1016479
- Full Text:
- Date Issued: 2013-01-28
A tale of two neglected systems-structure and function of the thin- and thick-walled sieve tubes in monocotyledonous leaves
- Authors: Botha, Christiaan E J
- Date: 2013
- Language: English
- Type: Article , text
- Identifier: vital:6499 , http://hdl.handle.net/10962/d1004514 , http://dx.doi.org/10.3389/fpls.2013.00297
- Description: There is a large body of information relating to the ontogeny, development and the vasculature of eudicotyledonous leaves. However, there is less information available concerning the vascular anatomy of monocotyledonous leaves. This is surprising, given that there are two uniquely different phloem systems present in large groups such as grasses and sedges. Monocotyledonous leaves contain marginal, large, intermediate, and small longitudinal veins that are interconnected by numerous transverse veins. The longitudinal veins contain two metaphloem sieve tube types, which, based upon their ontogeny and position within the phloem, are termed early (thin-walled) and late (thick-walled) sieve tubes. Early metaphloem comprises sieve tubes, companion cells and vascular parenchyma (VP) cells, whilst the late metaphloem, contains thick-walled sieve tubes (TSTs) that lack companion cells. TSTs are generally adjacent to, or no more than one cell removed from the metaxylem. Unlike thin-walled sieve tube (ST) -companion cell complexes, TSTs are connected to parenchyma by pore-plasmodesma units and are generally symplasmically isolated from the STs. This paper addresses key structural and functional differences between thin- and thick-walled sieve tubes and explores the unique advantages of alternate transport strategies that this 5–7 million years old dual system may offer. It would seem that these two systems may enhance, add to, or play a significant role in increasing the efficiency of solute retrieval as well as of assimilate transfer.
- Full Text:
- Date Issued: 2013
- Authors: Botha, Christiaan E J
- Date: 2013
- Language: English
- Type: Article , text
- Identifier: vital:6499 , http://hdl.handle.net/10962/d1004514 , http://dx.doi.org/10.3389/fpls.2013.00297
- Description: There is a large body of information relating to the ontogeny, development and the vasculature of eudicotyledonous leaves. However, there is less information available concerning the vascular anatomy of monocotyledonous leaves. This is surprising, given that there are two uniquely different phloem systems present in large groups such as grasses and sedges. Monocotyledonous leaves contain marginal, large, intermediate, and small longitudinal veins that are interconnected by numerous transverse veins. The longitudinal veins contain two metaphloem sieve tube types, which, based upon their ontogeny and position within the phloem, are termed early (thin-walled) and late (thick-walled) sieve tubes. Early metaphloem comprises sieve tubes, companion cells and vascular parenchyma (VP) cells, whilst the late metaphloem, contains thick-walled sieve tubes (TSTs) that lack companion cells. TSTs are generally adjacent to, or no more than one cell removed from the metaxylem. Unlike thin-walled sieve tube (ST) -companion cell complexes, TSTs are connected to parenchyma by pore-plasmodesma units and are generally symplasmically isolated from the STs. This paper addresses key structural and functional differences between thin- and thick-walled sieve tubes and explores the unique advantages of alternate transport strategies that this 5–7 million years old dual system may offer. It would seem that these two systems may enhance, add to, or play a significant role in increasing the efficiency of solute retrieval as well as of assimilate transfer.
- Full Text:
- Date Issued: 2013
Deagrarianisation and forest revegetation in a biodiversity hotspot on the Wild Coast, South Africa
- Shackleton, Ross T, Shackleton, Charlie M, Shackleton, Sheona E, Gambiza, James
- Authors: Shackleton, Ross T , Shackleton, Charlie M , Shackleton, Sheona E , Gambiza, James
- Date: 2013
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/60984 , vital:27905 , doi:10.1371/journal.pone.0076939
- Description: Deagraianisation is a worldwide phenomenon with widespread social, ecological and economic effects yet with little consensus on the local or higher level causes. There have been contested views on the causes and consequences of deagrarianisation on South Africa’s Wild Coast, which is an international biodiversity hotspot. Using GIS, household interviews and ecological sampling, we compared the perspectives of current and former cultivators as to why some have abandoned farming, whilst also tracking the uses and woody plant cover and composition of fields abandoned at different periods. The GIS analysis showed that field abandonment had been ongoing over several decades, with a decline from 12.5 % field cover in 1961 to 2.7 % in 2009. The area of forests and woodlands almost doubled in the corresponding period. There was a distinct peak in field abandonment during the time of political transition at the national level in the early 1990s. This political change led to a decrease in government support for livestock farming, which in turn resulted in reduced animal draught power at the household and community level, and hence reduced cropping. The study showed it is largely the wealthier households that have remained in arable agriculture and that the poorer households have abandoned farming. The abandoned fields show a distinct trend of increasing woody biomass and species richness with length of time since abandonment, with approximately three woody plant species added per decade. Most local respondents dislike the increases in forest and woodland extent and density because of anxiety about wild animals causing harm to crops and even humans, and the loss of an agricultural identity to livelihoods and the landscape.
- Full Text:
- Date Issued: 2013
- Authors: Shackleton, Ross T , Shackleton, Charlie M , Shackleton, Sheona E , Gambiza, James
- Date: 2013
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/60984 , vital:27905 , doi:10.1371/journal.pone.0076939
- Description: Deagraianisation is a worldwide phenomenon with widespread social, ecological and economic effects yet with little consensus on the local or higher level causes. There have been contested views on the causes and consequences of deagrarianisation on South Africa’s Wild Coast, which is an international biodiversity hotspot. Using GIS, household interviews and ecological sampling, we compared the perspectives of current and former cultivators as to why some have abandoned farming, whilst also tracking the uses and woody plant cover and composition of fields abandoned at different periods. The GIS analysis showed that field abandonment had been ongoing over several decades, with a decline from 12.5 % field cover in 1961 to 2.7 % in 2009. The area of forests and woodlands almost doubled in the corresponding period. There was a distinct peak in field abandonment during the time of political transition at the national level in the early 1990s. This political change led to a decrease in government support for livestock farming, which in turn resulted in reduced animal draught power at the household and community level, and hence reduced cropping. The study showed it is largely the wealthier households that have remained in arable agriculture and that the poorer households have abandoned farming. The abandoned fields show a distinct trend of increasing woody biomass and species richness with length of time since abandonment, with approximately three woody plant species added per decade. Most local respondents dislike the increases in forest and woodland extent and density because of anxiety about wild animals causing harm to crops and even humans, and the loss of an agricultural identity to livelihoods and the landscape.
- Full Text:
- Date Issued: 2013
Epidemic transmission of intestinal schistosomiasis in the seasonal part of the Okavango Delta, Botswana:
- Appleton, C C, Ellery, William F N, Byskov, Jens, Mogkweetsinyana, S S
- Authors: Appleton, C C , Ellery, William F N , Byskov, Jens , Mogkweetsinyana, S S
- Date: 2013
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144364 , vital:38339 , DOI: 10.1179/136485908X311867
- Description: A well documented epidemic of human intestinal schistosomiasis caused by Schistosoma mansoni occurred at Maun in the seasonal part of the Okavango Delta, Botswana, building from very few cases in the 1950s and early 1960s to a peak prevalence of greater than80% in the 1980s. A retrospective analysis was performed on all available records of the prevalence of S. mansoni in the Maun area and the corresponding flow records of the Thamalakane River. These revealed a statistically significant correlation between prevalence and flow, but only when a lag period was introduced. The correlation was greatest with a lag period of 5–6 years between the rise and fall of discharge and the rise and fall of transmission. Since the hydrological events in the delta follow a cyclical pattern, another epidemic around 2020 appears likely.
- Full Text:
- Date Issued: 2013
- Authors: Appleton, C C , Ellery, William F N , Byskov, Jens , Mogkweetsinyana, S S
- Date: 2013
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144364 , vital:38339 , DOI: 10.1179/136485908X311867
- Description: A well documented epidemic of human intestinal schistosomiasis caused by Schistosoma mansoni occurred at Maun in the seasonal part of the Okavango Delta, Botswana, building from very few cases in the 1950s and early 1960s to a peak prevalence of greater than80% in the 1980s. A retrospective analysis was performed on all available records of the prevalence of S. mansoni in the Maun area and the corresponding flow records of the Thamalakane River. These revealed a statistically significant correlation between prevalence and flow, but only when a lag period was introduced. The correlation was greatest with a lag period of 5–6 years between the rise and fall of discharge and the rise and fall of transmission. Since the hydrological events in the delta follow a cyclical pattern, another epidemic around 2020 appears likely.
- Full Text:
- Date Issued: 2013