Mitochondrial DNA paradox: sex-specific genetic structure in a marine mussel despite maternal inheritance and passive dispersal
- Teske, Peter R, Papadopoulos, Isabelle, Barker, Nigel P, McQuaid, Christopher D
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D
- Date: 2012
- Language: English
- Type: Article
- Identifier: vital:6836 , http://hdl.handle.net/10962/d1010959
- Description: Background: When genetic structure is identified using mitochondrial DNA (mtDNA), but no structure is identified using biparentally-inherited nuclear DNA, the discordance is often attributed to differences in dispersal potential between the sexes. Results: We sampled the intertidal rocky shore mussel Perna perna in a South African bay and along the nearby open coast, and sequenced maternally-inherited mtDNA (there is no evidence for paternally-inherited mtDNA in this species) and a biparentally-inherited marker. By treating males and females as different populations, we identified significant genetic structure on the basis of mtDNA data in the females only. Conclusions: This is the first study to report sex-specific differences in genetic structure based on matrilineally-inherited mtDNA in a passively dispersing species that lacks social structure or sexual dimorphism. The observed pattern most likely stems from females being more vulnerable to selection in habitats from which they did not originate, which also manifests itself in a male-biased sex ratio. Our results have three important implications for the interpretation of population genetic data. First, even when mtDNA is inherited exclusively in the female line, it also contains information about males. For that reason, using it to identify sex-specific differences in genetic structure by contrasting it with biparentally-inherited markers is problematic. Second, the fact that sex-specific differences were found in a passively dispersing species in which sex-biased dispersal is unlikely highlights the fact that significant genetic structure is not necessarily a function of low dispersal potential or physical barriers. Third, even though mtDNA is typically used to study historical demographic processes, it also contains information about contemporary processes. Higher survival rates of males in non-native habitats can erase the genetic structure present in their mothers within a single generation.
- Full Text:
- Date Issued: 2012
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Barker, Nigel P , McQuaid, Christopher D
- Date: 2012
- Language: English
- Type: Article
- Identifier: vital:6836 , http://hdl.handle.net/10962/d1010959
- Description: Background: When genetic structure is identified using mitochondrial DNA (mtDNA), but no structure is identified using biparentally-inherited nuclear DNA, the discordance is often attributed to differences in dispersal potential between the sexes. Results: We sampled the intertidal rocky shore mussel Perna perna in a South African bay and along the nearby open coast, and sequenced maternally-inherited mtDNA (there is no evidence for paternally-inherited mtDNA in this species) and a biparentally-inherited marker. By treating males and females as different populations, we identified significant genetic structure on the basis of mtDNA data in the females only. Conclusions: This is the first study to report sex-specific differences in genetic structure based on matrilineally-inherited mtDNA in a passively dispersing species that lacks social structure or sexual dimorphism. The observed pattern most likely stems from females being more vulnerable to selection in habitats from which they did not originate, which also manifests itself in a male-biased sex ratio. Our results have three important implications for the interpretation of population genetic data. First, even when mtDNA is inherited exclusively in the female line, it also contains information about males. For that reason, using it to identify sex-specific differences in genetic structure by contrasting it with biparentally-inherited markers is problematic. Second, the fact that sex-specific differences were found in a passively dispersing species in which sex-biased dispersal is unlikely highlights the fact that significant genetic structure is not necessarily a function of low dispersal potential or physical barriers. Third, even though mtDNA is typically used to study historical demographic processes, it also contains information about contemporary processes. Higher survival rates of males in non-native habitats can erase the genetic structure present in their mothers within a single generation.
- Full Text:
- Date Issued: 2012
Hippocampus queenslandicus Horne, 2001–a new seahorse species or yet another synonym?
- Teske, Peter R, Lourie, Sara A, Matthee, Conrad A, Green, David M
- Authors: Teske, Peter R , Lourie, Sara A , Matthee, Conrad A , Green, David M
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445666 , vital:74412 , https://www.publish.csiro.au/zo/ZO07021
- Description: During the past six years, 15 new seahorse species (Syngnathidae: Hippocampus) have been described on the basis of morphological characters. This approach is known to be problematic, and most species names in Hippocampus are now considered to be synonyms. Genetic methods have great potential to resolve the confused taxonomy of the genus, but none have yet been incorporated into species descriptions. In the present study, mitochondrial control region and cytochrome b DNA sequences, as well as morphological data from the recently described Queensland seahorse, Hippocampus queenslandicus Horne, 2001, were compared with corresponding data from closely related seahorse species to determine whether there is strong support for distinction of this taxon. The haplotypes of H. queenslandicus were nested among haplotypes belonging to two of the three major Southeast Asian lineages of H. spinosissimus Weber, 1913. Although incomplete lineage sorting characteristic of very recently diverged species cannot be ruled out, the genetic results suggest that H. queenslandicus is paraphyletic. Morphometric analysis further fails to provide strong support for the species status of H. queenslandicus. We conclude that support for the distinctness of H. queenslandicus is weak, and indicate that it is a synonym of H. spinosissimus. The taxonomic validity of other recently described seahorse species should be similarly scrutinised using combined genetic and detailed morphological methods.
- Full Text:
- Date Issued: 2007
- Authors: Teske, Peter R , Lourie, Sara A , Matthee, Conrad A , Green, David M
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445666 , vital:74412 , https://www.publish.csiro.au/zo/ZO07021
- Description: During the past six years, 15 new seahorse species (Syngnathidae: Hippocampus) have been described on the basis of morphological characters. This approach is known to be problematic, and most species names in Hippocampus are now considered to be synonyms. Genetic methods have great potential to resolve the confused taxonomy of the genus, but none have yet been incorporated into species descriptions. In the present study, mitochondrial control region and cytochrome b DNA sequences, as well as morphological data from the recently described Queensland seahorse, Hippocampus queenslandicus Horne, 2001, were compared with corresponding data from closely related seahorse species to determine whether there is strong support for distinction of this taxon. The haplotypes of H. queenslandicus were nested among haplotypes belonging to two of the three major Southeast Asian lineages of H. spinosissimus Weber, 1913. Although incomplete lineage sorting characteristic of very recently diverged species cannot be ruled out, the genetic results suggest that H. queenslandicus is paraphyletic. Morphometric analysis further fails to provide strong support for the species status of H. queenslandicus. We conclude that support for the distinctness of H. queenslandicus is weak, and indicate that it is a synonym of H. spinosissimus. The taxonomic validity of other recently described seahorse species should be similarly scrutinised using combined genetic and detailed morphological methods.
- Full Text:
- Date Issued: 2007
Lack of genetic differentiation among four sympatric southeast African intertidal limpets (Siphonariidae): phenotypic plasticity in a single species?
- Teske, Peter R, Barker, Nigel P, McQuaid, Christopher D
- Authors: Teske, Peter R , Barker, Nigel P , McQuaid, Christopher D
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445461 , vital:74390 , https://doi.org/10.1093/mollus/eym012
- Description: Specimens of four sympatric intertidal limpet species (Siphonaria dayi, S. tenuicostulata, S. anneae and S. nigerrima) were collected from four localities on the east coast of South Africa and southern Mozambique. Their phylogenetic relationships were investigated using sequences of the mitochondrial COI gene and the intron-containing nuclear ATPSβ gene. Two closely related lineages were recovered, which grouped specimens on the basis of geography rather than morphology. One lineage was associated with the subtropical coastline of South Africa's east coast and the other with the tropical coastline of northeastern South Africa and southern Mozambique. This genetic discontinuity coincides with a biogeographic boundary located in the vicinity of Cape St Lucia. Combined genetic diversity of the four species was lower than that of three other southern African congeners, and fell within the range determined for single southern African marine mollusc species. We suggest that the four limpet species are in fact different morphotypes of a single species.
- Full Text:
- Date Issued: 2007
- Authors: Teske, Peter R , Barker, Nigel P , McQuaid, Christopher D
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445461 , vital:74390 , https://doi.org/10.1093/mollus/eym012
- Description: Specimens of four sympatric intertidal limpet species (Siphonaria dayi, S. tenuicostulata, S. anneae and S. nigerrima) were collected from four localities on the east coast of South Africa and southern Mozambique. Their phylogenetic relationships were investigated using sequences of the mitochondrial COI gene and the intron-containing nuclear ATPSβ gene. Two closely related lineages were recovered, which grouped specimens on the basis of geography rather than morphology. One lineage was associated with the subtropical coastline of South Africa's east coast and the other with the tropical coastline of northeastern South Africa and southern Mozambique. This genetic discontinuity coincides with a biogeographic boundary located in the vicinity of Cape St Lucia. Combined genetic diversity of the four species was lower than that of three other southern African congeners, and fell within the range determined for single southern African marine mollusc species. We suggest that the four limpet species are in fact different morphotypes of a single species.
- Full Text:
- Date Issued: 2007
Phylogeographic structure of Octopus vulgaris in South Africa revisited: identification of a second lineage near Durban harbor
- Teske, Peter R, Oosthuizen, A, Papadopoulos, Isabelle, Barker, Nigel P
- Authors: Teske, Peter R , Oosthuizen, A , Papadopoulos, Isabelle , Barker, Nigel P
- Date: 2007
- Language: English
- Type: Article
- Identifier: vital:6544 , http://hdl.handle.net/10962/d1006000
- Description: In a previous study that investigated genetic structure of Octopus vulgaris along the South African coast by sequencing the mitochondrial cytochrome oxidase III gene (COIII), all sequences generated were identical. Such a finding is unusual, because mitochondrial DNA mutates quickly, and several marine invertebrates present in southern Africa show considerable genetic variation and structure. We reanalysed the samples using two different mitochondrial markers, namely cytochrome oxidase I (COI) and the large ribosomal subunit (16S rRNA). Sequences of both these markers showed variation. The conclusion of the previous study, that South Africa’s O. vulgaris population is characterised by a lack of genetic structure along the coast, is rejected. Some specimens from Durban (southeast Africa) were genetically more different from those found in the remainder of the country than were specimens from other regions (Tristan da Cunha and Senegal). We suggest that the lineage in Durban may have been recently introduced.
- Full Text:
- Date Issued: 2007
- Authors: Teske, Peter R , Oosthuizen, A , Papadopoulos, Isabelle , Barker, Nigel P
- Date: 2007
- Language: English
- Type: Article
- Identifier: vital:6544 , http://hdl.handle.net/10962/d1006000
- Description: In a previous study that investigated genetic structure of Octopus vulgaris along the South African coast by sequencing the mitochondrial cytochrome oxidase III gene (COIII), all sequences generated were identical. Such a finding is unusual, because mitochondrial DNA mutates quickly, and several marine invertebrates present in southern Africa show considerable genetic variation and structure. We reanalysed the samples using two different mitochondrial markers, namely cytochrome oxidase I (COI) and the large ribosomal subunit (16S rRNA). Sequences of both these markers showed variation. The conclusion of the previous study, that South Africa’s O. vulgaris population is characterised by a lack of genetic structure along the coast, is rejected. Some specimens from Durban (southeast Africa) were genetically more different from those found in the remainder of the country than were specimens from other regions (Tristan da Cunha and Senegal). We suggest that the lineage in Durban may have been recently introduced.
- Full Text:
- Date Issued: 2007
Phylogeographic structure of the caridean shrimp Palaemon peringueyi in South Africa: further evidence for intraspecific genetic units associated with marine biogeographic provinces
- Teske, Peter R, Froneman, P William, Barker, Nigel P, McQuaid, Christopher D
- Authors: Teske, Peter R , Froneman, P William , Barker, Nigel P , McQuaid, Christopher D
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445486 , vital:74392 , https://doi.org/10.2989/AJMS.2007.29.2.9.192
- Description: Recent genetic studies have shown that most widely distributed, passively dispersing invertebrates in southern Africa have regional intraspecific units that are associated with the three main marine biogeographic provinces (cool-temperate, warm-temperate and subtropical). The caridean shrimp Palaemon peringueyi also occurs in all three provinces, but the fact that it can disperse both actively and passively (i.e. larval drifting, adult walking/swimming and potential adult rafting by means of floating objects) suggests that the amount of gene flow between regions may be too high for evolutionary divergence to have taken place. Samples of P. peringueyi were collected throughout South Africa and an intraspecific phylogeny was reconstructed using mitochondrial COI and 16S rRNA sequences. Three major clades were recovered, which were broadly associated with the three biogeographic regions. This suggests that, even though P. peringueyi can disperse actively, the fact that neither larvae nor adults are strong swimmers has resulted in genetic subdivisons comparable to those of passively dispersing coastal invertebrates in southern Africa.
- Full Text:
- Date Issued: 2007
- Authors: Teske, Peter R , Froneman, P William , Barker, Nigel P , McQuaid, Christopher D
- Date: 2007
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445486 , vital:74392 , https://doi.org/10.2989/AJMS.2007.29.2.9.192
- Description: Recent genetic studies have shown that most widely distributed, passively dispersing invertebrates in southern Africa have regional intraspecific units that are associated with the three main marine biogeographic provinces (cool-temperate, warm-temperate and subtropical). The caridean shrimp Palaemon peringueyi also occurs in all three provinces, but the fact that it can disperse both actively and passively (i.e. larval drifting, adult walking/swimming and potential adult rafting by means of floating objects) suggests that the amount of gene flow between regions may be too high for evolutionary divergence to have taken place. Samples of P. peringueyi were collected throughout South Africa and an intraspecific phylogeny was reconstructed using mitochondrial COI and 16S rRNA sequences. Three major clades were recovered, which were broadly associated with the three biogeographic regions. This suggests that, even though P. peringueyi can disperse actively, the fact that neither larvae nor adults are strong swimmers has resulted in genetic subdivisons comparable to those of passively dispersing coastal invertebrates in southern Africa.
- Full Text:
- Date Issued: 2007
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