Computational design for genome reduction of Lactococcus lactis towards microbial chassis development
- Authors: Hamese, Saltiel
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435321 , vital:73147
- Description: Access restricted. Expected release date 2026. , Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2024
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Developing a community of practice to promote the use of biological control in the integrated management of Prosopis in South Africa
- Authors: Van Staden, Gretha
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434998 , vital:73122
- Description: Prosopis spp. are non-native species present in the arid parts of southern Africa. These trees originated in the Americas and were first introduced as a source of fodder, shade, and wood, but have become invasive, negatively impacting local biodiversity, and disrupting the delivery of ecosystem services. Some species of Prosopis hybridise freely, complicating identification and subsequent control. The control of Prosopis in the Northern Cape Province of South Africa is still contentious, because of the perceived benefits to some landowners. The effectiveness of biological control agents to control the spread of Prosopis has been quantified, more damaging agents have been considered in recent years because of the continued increase in Prosopis density. Research into the establishment of a Community of Practice (CoP) to address the differences in perceptions regarding the control of Prosopis in the Northern Cape Province is considered an appropriate starting point to conceptualise the challenges to the successful integrated management of Prosopis. As farmers are the main stakeholders involved with Prosopis control, understanding the role of farmers and the functioning of farming enterprises in the Northern Cape is imperative for the development of both a CoP as well as the appropriate management of Prosopis. To foster engagement with as many stakeholders as possible, workshops dealing with biological control as part on an integrated approach to the control of Prosopis were held in towns in the Northern Cape Province: Groblershoop, Brandvlei, Kenhardt, Upington, Prieska and Williston. Some of the main concerns of the landusers include the host specificity of the released biocontrol agents, as well as increased transparency and communication. This is especially in regards to the research on present and future biological control agents that will possibly improve the perceptions of stakeholders. The mechanical harvesting and use of biomass as a control method was supported, especially where farmers were removing Prosopis from their properties, leaving large amounts of biomass in the veld. Continued research into Prosopis in the Northern Cape needs to consider the possibility of secondary invasions, especially in areas where native bush encroachment is already a concern. The impact of clearing in terms of natural grazing and animal improvement needs to be quantified, to conceptualise the importance of maintaining better veld quality versus using Prosopis for fodder. Biological control targeting not only the reproductive output of the trees, but also the standing biomass has support from the majority of the land users in the Northern Cape Province following these workshops and this study shows the importance of a socio-ecological approach to the control of landscape scale invasion. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2024
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Educators’ experiences of psychosocial support workshops during COVID-19 in Eastern Cape, South Africa
- Authors: Mabasa, Rendani Mirriam
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435457 , vital:73159
- Description: There is growing awareness of the value and central role of immediate and long-term mental health and psychosocial support (MHPSS) interventions, especially during times of crisis such as Covid-19. The World Health Organization has identified the education sector as a crucial intervention site for public mental health promotion. In collaboration with members of the Makhanda education community, the Rhodes University Community Engagement office identified psychosocial support for educators and educational practitioners as a key societal and educational challenge. Focusing specifically on the experiences of educators, this study sought to solicit their experiences of MHPSS workshops in a rural city of the Eastern Cape province of South Africa. Focus groups with educators and educational practitioners in non-government organisations, care centres and other educational settings who participated in the psychosocial support workshops were conducted. Data was analysed using community psychology’s social action framework. Four broad themes emerged from the data: the responsibilisation of educators during and post-Covid-19, educators’ resilience and support for each other, educators’ mental health promotion through psychosocial support workshops, and top-down intervention strategies that fall short in addressing educators’ and learners’ needs. This study demonstrates the value of university-community partnerships in education settings which are key sites for public mental health promotion. In this study, I advocate psychosocial support as a standard practice available for educational practitioners and show how professional training programmes in higher education can be responsive to societal challenges via collaborative approaches. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
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Elucidation of the roles of the carbonic anhydrase enzymes, CanA & CanB, in the physiology of Mycobacterium smegmatis
- Authors: Jackson, Gabriella Teresa
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435299 , vital:73145
- Description: The bacterial pathogen Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis (TB) and one of the leading infectious causes of death globally. The success of Mtb as a pathogen depends on its ability to detect and respond to a variety of physical and chemical stresses it encounters during infection of its human host. These environmental stresses include shifts in temperature, oxygen concentration, osmolarity and nutrient availability. Mtb is, in addition, exposed to changes in pH and CO2 concentration in the intracellular and extracellular environments it inhabits, which the bacterium has to adapt to in order to ensure its growth, survival and/or persistence during infection. Carbonic anhydrases (CAs) are a widely distributed family of enzymes that catalyse the reversible hydration of carbon dioxide (CO2) to bicarbonate (HCO3−) in the reaction: CO2 + H2O ⇄ HCO3− + H+. In microbes, CA activity is important for the activity of enzymes involved in carbon fixation as well as for maintaining pH homeostasis. Mtb is known to express three CAs, encoded by the Rv3588c, Rv1284 and Rv3273 genes (canA, canB and canC, respectively). The role(s) of these CA enzymes in the physiology of Mtb and other mycobacterial species, such as Mycobacterium smegmatis (Msm), has not been elucidated to date. To gain insights into the function of the CanA and CanB enzymes in mycobacterial species, we generated both canA and canB knockdown (KD) and knockout (KO) mutants in the fast-growing mycobacterial species, Msm, and analysed their growth phenotypes under several growth conditions where CA activity is known to be required. Notably, Msm lacks the CanC homologue, which makes it an ideal surrogate to focus on CanA and CanB. The Msm canA KD mutant was found to display a growth defect following anhydrotetracycline (ATc)-mediated gene silencing at atmospheric (low) CO2 concentrations [~0.035% CO2 (v/v)]. The growth defect could be rescued by incubating cells at physiological (high) CO2 concentrations [~5% CO2 (v/v)] or by supplementing the growth media with either HCO3− or the metabolic end-products of certain HCO3−-dependent-carboxylase enzymes at low CO2 concentrations. The ability of these compounds to rescue the growth of the canA KD mutants was, however, dependent on the extent of ATc-mediated gene silencing, suggesting that the canA gene is required for Msm growth at both low and high CO2 concentrations. This was confirmed by our findings that canA could only be genetically inactivated when a second copy of the gene was provided on the chromosome in trans, regardless of the CO2 concentration used. In contrast to our observations for canA, no differences in the growth phenotypes of the Msm wild type (WT) and canB KD or knockout (KO) mutant strains were observed following silencing or inactivation of the canB gene at either low or high CO2 concentrations or different pH values. These observations suggest that, in contrast to canA, the canB gene is dispensable for the growth of Msm under standard laboratory growth conditions. The canB KO mutant strain, nevertheless, displayed a slight decrease in its ability to form biofilms when compared to the WT strain, which could be restored by genetic complementation. CanB activity may, therefore, be required to promote bacterial growth and/or survival under biofilm conditions where CO2 diffusion into cells is limited, a phenomenon that has recently been observed in other microbes. Further studies are required to confirm the role of CanB in biofilm formation and to determine how the different CA enzymes cooperate to promote the growth and survival of mycobacterial species in the various environments they are known to inhabit. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2024
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English morphological awareness and reading comprehension in deaf and hearing grade 3 to 7 learners from Lesotho
- Authors: Tšehla, Puleng Magret
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/${Handle} , vital:73169
- Description: There is a noticeable literacy crisis observed in both Deaf and hearing learners from Lesotho. This study investigates the English Morphological Awareness and reading comprehension of 26 Deaf and 82 hearing learners enrolled in grades 3 to 7 in two schools in Lesotho. This study employs a correlational cross-sectional quantitative design. Each participant completed two literacy assessment tasks: a reading comprehension task and a Morphological Awareness task. The Morphological Awareness task encompassed five subtasks that assessed the learners’ inflectional, derivational, and compound awareness. The results of these assessments are analysed through appropriate statistical analyses. In addition, errors made by the Deaf and hearing learners on the literacy assessments are compared and analysed. This analysis determines the types of errors made by each group and identifies the factors that influence these errors. The performance of both groups in terms of task scores, in general, was low. Deaf learners and hearing learners’ performance on the tasks was similar. This outcome contradicts most previous studies, which indicate that Deaf learners typically exhibit lower levels of Morphological Awareness development and reading comprehension compared to their hearing counterparts. The results of this study also suggest that there is a statistically significant relationship between Morphological Awareness and reading comprehension in both groups. Finally, Deaf and hearing learners made similar errors on the tasks. There was some evidence of influence from both the Deaf and hearing learners’ first languages (Sesotho and Lesotho Sign Language, respectively). The study demonstrates the need for more explicit morphological instruction to improve both Deaf and hearing learners’ literacy. , Thesis (MA) -- Faculty of Humanities, Linguistics and Applied Language Studies, 2024
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Functional significance of mixed-species groups for zebra (Equus quagga) in savanna habitats
- Authors: Corry-Roberts, Carys Alexandra
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434925 , vital:73116
- Description: Globally, herbivore populations are facing decline, which threatens their crucial role within the ecosystems they inhabit. Herbivores are essential to ecosystem structure and function because they act as prey for higher trophic levels, cycle soil nutrients, and alter vegetation structure. Understanding the drivers that shape herbivore habitat use and selection are therefore critical for making informed conservation and management decisions. Like all prey species, herbivores must balance a trade-off between acquiring resources and avoiding predation which is influenced by a number of species-specific intrinsic traits and various ecological drivers. Herbivores can also track risk over space and time, and certain habitat structures and landscape features can influence risk perception; this is termed the landscape of fear. To mitigate the risk-reward trade-off, herbivores employ a suite of behavioural responses. Group formation is likely the most well-documented of these responses. However, grouping results in the information-competition trade-off, wherein group members may obtain valuable information regarding the location of resources and/or the risk of predation, but may suffer from increased competition, especially among larger group sizes. Mixed-species groups—an assemblage of two or more species in close spatial association—have the potential to mitigate some of the competitive costs of larger conspecific groups and enhance the anti-predator and/or foraging benefits of grouping. African savannas provide a particularly useful natural laboratory to study mixed-species groups, due to the high diversity of prey species and habitat heterogeneity present. Previous studies have investigated the mixed-species effect within these systems, but have yet to quantify some of the identity-dependent costs and benefits associated with mixed-species herding. Thus, the overall aim of my study was to quantify the functional significance of mixed-species groups for zebra (Equus quagga) herding with two of their most common herding partners, impala (Aepyceros melampus) and wildebeest (Connochaetes taurinus). My study was conducted at multiple spatial scales in the southern portion of the Kruger National Park, South Africa between 2021 and 2022. I found that mixed-species herding altered zebra landscape use, resulting in a quantifiable intensification of habitat use compared to when they herd with conspecifics. I did not observe significant habitat expansion for zebra in mixed-species herds compared to single-species herds, likely because the anti-predator benefits of mixed-species herding convey enhanced foraging opportunities in already-safe habitats. Zebra foraging with impala achieved greater foraging success and experienced lower levels of competition, compared to zebra foraging with wildebeest. However, compared to foraging with conspecifics, the levelled landscape of fear zebra experienced when foraging with wildebeest resulted in increased foraging success across the landscape. My findings highlight the context-dependency of the costs and benefits associated with different herding partners for zebra, and suggest that in mixed-species herds with wildebeest, zebra experience increased potential fitness benefits compared to herding with impala or conspecifics. Overall, the findings of my study suggest that mixed-species herding is an important tool in the suite of anti-predator behaviours employed by prey species, and one with significant implications for survivorship, habitat use, and ultimately, community level interactions. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2024
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High-altitude temporary systems and macroinvertebrate composition in La Nina cycle, Maloti-Drakensberg
- Authors: Moyo, Sibusisiwe
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434963 , vital:73119
- Description: The Maloti-Drakensberg Mountain is an important water catchment area for South Africa and Lesotho. It is rich in biodiversity in terms of endemic flora and fauna and has a high density of temporary wetlands in the form of Afromontane tarns and rock pools. There is, however, limited information on the distribution of macroinvertebrates in these ecosystems and environmental factors that drives their composition. To that end, this study investigated macroinvertebrate diversity and the effect of environmental factors on community assemblage in the Maloti-Drakensberg Mountain temporary wetlands, specifically tarns and rock pools. The main aims were to describe the abundance, diversity, and distribution of macroinvertebrates in temporary wetlands in the Maloti-Drakensberg Mountain. Furthermore, it aimed to investigate the effect of environmental variables on habitat structuring, spatial variations, and macroinvertebrate community composition in tarns and rockpools in the Maloti-Drakensberg Mountain. Seventy temporary wetlands (29 tarns and 41 rock pools) were surveyed over a once-off sampling (3 March – 7 April 2022). The wetlands were from 3 provinces including Eastern Cape, Free State, and KwaZulu-Natal. 15278 individual macroinvertebrates from 13 orders, 35 families, and 46 genera were collected and identified. Species accumulation curves incorporating both tarns and rock pools showed that observed results were significantly lower than Chao 1 and Chao 2 estimates meaning that the sampled sites were not enough to provide a comprehensive picture of the biodiversity in the region. This was also observed for rock pools when the temporary wetlands were analysed separately, however, the Chao 1 and Chao 2 values for tarns were almost equal to the observed values implying that sampled sites were enough to give a detailed picture of macroinvertebrate composition in tarns. Tarns and rock pools were significantly different in terms of species richness and Shannon-Wiener diversity index but showed no significant differences for relative abundance and Pielou’s evenness. Of the 35 families identified, 19 were considered core taxa with Dytiscidae and Corixidae being the most dominant. Additionally, there was moderate Nestedness metric based on Overlap and Decreasing Fill (NODF) value of 33.05369, with 32 out of 35 families being idiosyncratic. Predators were the dominant feeding group with omnivores being the least common. Non-Metric multi-Dimensional Scaling (NMDS) and PERMANOVA results showed that tarns and rock pools supported distinctly different macroinvertebrate communities per wetland type and location respectively. Physicochemically, tarns and rock pools were significantly different in terms of water temperature, depth, area, and chlorophyll-a concentration with tarns exhibiting higher values. Temporary wetlands in the sampled localities differed in terms of pH, EC, DO, water temperature, altitude, and phosphate. Principal Component Analysis showed that tarns were positively associated with area and depth whereas rock pools with phosphate. Akaike’s Information Criterion (AICc) selection showed that area, pH, and water temperature were significantly influencing community assemblage in temporary wetlands. Furthermore, area significantly influenced all four measured biodiversity indices: relative abundance, species richness, Pielou’s evenness and Shannon-Wiener Index, with water temperature also influencing relative abundance and altitude, species richness. Overall, the species composition showed that the sites were sampled later in the hydroperiod as evidenced by the dominance of active dispersers. The extended distribution of Prosthetops gladiator in the Eastern Cape highlights the need for extensive surveys to provide valuable insight into the distribution patterns of macroinvertebrates in the region. Furthermore, the interplay between physicochemical variables and biodiversity indices emphasized area, water temperature and pH as significant factors. However, their limited explanatory power suggests that obscure factors also influence the diversity cementing the need for further exploration of these enigmatic systems. Taxonomic challenges, especially regarding large branchiopods, hindered precise species distribution and conservation status determination. This study is the first to provide a comprehensive list of macroinvertebrates from temporary wetlands in the Maloti-Drakensberg Mountain. These results establish a valuable baseline for future biological monitoring studies, particularly in assessing species composition and responses to anthropogenic activities. It is a timeous study considering the sensitivity of these systems to climate change as they act as sentinel sites hence the need for foundational data on which to make future projections. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2024
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Home is in the wandering
- Authors: Purdon, Bradley Michael
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435547 , vital:73167
- Description: Submitted in partial fulfilment of the requirements for the degree of Master of Arts in Creative Writing , Thesis (MA) -- Faculty of Humanities, School of Languages and Literatures, 2024
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Identifying the factors that influence parents and caregivers to commit child maltreatment: systematic review
- Authors: Dipholo, Mamdlalose Emily
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435421 , vital:73156
- Description: Child maltreatment, encompassing various forms of abuse and neglect, poses a significant global public health concern. This study provides a comprehensive examination of the multifaceted dimensions of child maltreatment, including physical, emotional, and sexual abuse, as well as neglect. The impact of maltreatment on the developing child is profound, resulting in a range of adverse physical and mental health outcomes, developmental delays, behavioural challenges, and social difficulties. The aim of this study was to comprehensively review and synthesise peer-reviewed research on the factors influencing parents and caregivers in committing child maltreatment. This systematic review identified the multifaceted factors influencing parents and caregivers to engage in child maltreatment. Using a social ecological framework, ten key themes emerged, namely poverty and lack of access to services, intergenerational transmission of abuse, childhood trauma, substance abuse, domestic violence, neighbourhood violence, cultural practices, social factors, children’s individual factors, and caregivers' mental health concerns. Personal history, caregiver’s mental health, substance abuse, poor awareness of self-protection, and gender emerged as significant individual-level contributors. Non biological caregivers and domestic violence were identified as relationship-level factors. At the community level, poverty, lack of access to services, unemployment, and neighbourhood violence were found to impact child maltreatment. Cultural values and the intergenerational transmission of abuse were reported as influential societal-level factors. The study underscores the complex interplay of personal, environmental, and cultural influences in child maltreatment, highlighting the need for comprehensive strategies to address this critical issue. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
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Ingqiqo yamanina kuxanduva lokusiphula neengcambu ugonyamelo nokuxhatshazwa: Uhlalutyo lweetekisi ZesiXhosa ezicatshulwe kuncwadi olubhalwe ngamanina (1976-2015)
- Authors: Bilatyi, Katy Nomthandazo
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: Xhosa
- Type: Academic theses , Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/435582 , vital:73170 , DOI 10.21504/10962/435582
- Description: Uphando luza kuqwalasela ingqiqo yamanina kuxanduva lokusiphula neengcambu ugonyamelo nokuxhatshazwa kwawo ngamadoda. Ingxoxo iza kugxila kubabhali abangamanina beencwadi zesiXhosa ezicatshulweyo kolu phando, nalapho kuqwalaselwa indlela ababazoba ngayo abalinganiswa babo abangamanina. Kule ngxoxo kuqwalaselwa indlela ababhali abangamanina abafana noBelebesi (1976), Dazela (1988), Magadla (1992) Madolo (1998), Mayosi (2003), Magqashela (2006) kunye noBuzani (2015) abathe babazoba ngayo abalinganiswa abangamanina kwiincwadi zesiXhosa ezicatshuliweyo. Oku kukutyhila ubukrelekrele bababhali ekusebenziseni uncwadi ukuzisa izisombululo kwimingeni ajamelene nayo amanina efana nogonyamelo kunye noxhatshwazo. Obu bukrelekrele baba babhali bujongwa ngokweembali ezimbini, imbali yaphambi kozuzo lwenkululeko emva kongenelelo lobuKoloniyali kunye neyasemva kozuzo lwenkululeko yaseMzantsi Afrika. Iincwadi ezikhethiweyo zibhalwe phakathi kweminyaka ye-1976 ukuya kwiminyaka yama-2015. Uphando luya kujonga ukuba lungaba lukhona utshintsho kusini na kwindlela la manina ababazoba ngayo abalinganiswa ngokwezi mbali zahlukileyo kananjalo naxa bezotywa ngababhali abangamadoda. Uphando luya kutyhila kananjalo imixholo nemixholwana abayikhethayo nedlulisa iimvakalelo zabo bengamanina kumbandela wogonyamelo olukhatshwa yipatriyakhi kunye noxhatshazo abalufumana kumadoda. Xa kuphendlwa le mixholo yaba babhali bahlukileyo baneemvelaphi ezahlukileyo ngokwemontlalo bebhala ngokwamaxesha okanye iimbhali ezahlukileyo, kuya kucaca ukuba amava abo ayafana nokuba linina okanye ibhinqa. Loo mava abo anele ukuba bajikeleze kwimixholo ebizwa ngokuba yifeminist themes nakubeni izimbo zabo zokubhala zahlukile nje. Injongo kukubonisa ukuba nangona amanina aphila phantsi kweemeko neemontlalo ezahlukileyo nje, iinzima neentlungu zawo azisombulula ngendlela efanayo ngokusebenzisa usiba. Le ngxoxo ikhatshwa ziithiyori ezifana nefemayinizimu, ngakumbi ifemayinizimu yaseAfrika kunye kunye nangokoMzantsi Afrika iquka iMotherism kunye nenkcubeko ephehlelelwe phantsi kwePatriyakhi. Ezi thiyori ziludondolo lokuphendla nokuhlalutya ezi ncwadi zikhethiweyo zesiXhosa ukuze sicacelwe yeyona ndima idlalwa ngamanina kuluntu nanjengoko sisazi ukuba apha eMzantsi Afrika adlale eyona ndima yokuncedisa ekuziseni utshintsho kwimibandela yengcinezelo nasekuzuzweni kwenkululeko. Yiyo loo nto kufuneka nawo abonakale exhamla ngokulinganayo namadoda kwinkululeko ayisebenzeleyo ngokususa ugonyamelo, uxhatshazo nokubulawa kwawo ngamadoda. , Thesis (PhD) -- Humanities, School of Languages and Literatures, 2024
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Insights: elucidation of squalene monooxygenase inhibitors for lowering cholesterol in cardiovascular diseases
- Authors: Leoma, Mofeli Benedict
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434861 , vital:73111
- Description: Statins have been used to lower high cholesterol levels in the past few decades. However, several studies have shown that some people taking statins experience side effects over time, especially elderly patients, women of childbirth possibility, and children. Several studies have shown that the majority of people with underlying cardiovascular complications caused by high cholesterol are at a greater risk of fatality due to COVID-19, regardless of age and sex. The literature suggests that antimycotic squalene monooxygenase inhibitors, terbinafine and its derivatives, and anticholesterolemic squalene monooxygenase (SM) inhibitors could be another option and a safer remedy for lowering cholesterol in mammals. Molecular docking calculations, molecular dynamics (MD) simulations, molecular mechanics generalized born surface area (MM-GBSA) calculations, quantum mechanics/molecular mechanics calculations (QM/MM), and density functional theory (DFT) calculations were used in this study. An early stage in drug discovery, in which small molecular hits from high- throughput screening (HTS) are evaluated and undergo limited optimization to identify promising lead compounds, is referred to as lead generation. To address the first step of lead generation, the number of compounds to be tested was narrowed down, and the hit compounds that could be taken for further tests were obtained. Thus, the molecular docking technique was taken advantage of, which assisted us in identifying the antimycotic ligand SDZ 18, which had a good binding affinity of about -8,4 kcal mol−1. Another widely employed strategy, the molecular mechanics-generalized born surface area (MM-GBSA), was used to investigate the binding free energies of the protein-ligand complexes to validate the binding affinities obtained from molecular docking. Despite the excellent docking results, it must be emphasized that the stability of the ligand in the binding pocket must be investigated. To address this, the protein-ligand complexes were then taken through molecular dynamics for 100 ns simulations calculations which showed that the inhibitors stayed in the binding pocket with the RMSD values below 3.5 Å for most systems. This provided insight into a realistic model because the docked complexes were placed in conditions closer to the physiological environment at 300 K and 1.01325 bar, and in an explicitly solvated dynamic environment. Density functional theory (DFT) at the B3LPY level of theory using the standard 6-31G(d,p) basis set was used to assess the reactivity and other properties of the SM inhibitors. ONIOM calculations were performed to explain what was happening at the microscopic level by calculating the total energy of the complex. The aim of this project was to efficiently uncover the non-physical aspects of SM inhibitors with the help of computational techniques to identify new drugs that can lower high cholesterol levels. From a theoretical perspective, the results obtained from docking indicated that the antimycotic ligands SDZ SBA 586 18 and TNSA 84 (trisnor-squalene alcohol ) have good binding affinities, and the MM-GBSA method provided free energy calculations. MD results indicated that the stability of the ligand in the binding pocket was achieved during the 100 ns simulations. The HOMO-LUMO energy gaps obtained from DFT calculations provided information on the reactivity of the ligands. Other insights into the protein-ligand complexes were obtained from a hybrid ONIOM QM/MM study. , Thesis (MSc) -- Faculty of Science, Chemistry, 2024
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Interlingual and intercultural communication discordances as impediments to the provision of quality public healthcare services: cases of Cecilia Makiwane Hospital, Nkqubela Chest Hospital and Frere Hospital
- Authors: Hlitane, Nkosekaya
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435501 , vital:73163
- Description: This study seeks to explore interlingual and intercultural discordances between clinicians and patients during treatment processes in selected public hospitals in the Eastern Cape. The two languages under investigation are English and isiXhosa. Intercultural communication refers to a phenomenon in which people who speak different native languages are engaged in a conversation (Gudykunst 1993). , Thesis (MA) -- Faculty of Humanities, School of Languages and Literatures, 2024
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Investigating changes in pineapple (Aananas comosus) cultivation in the Eastern Cape, South Africa, from 1984 to 2020
- Authors: Marriner, Paul Joseph
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435354 , vital:73150
- Description: Land use and land cover change (LULCC) resulting from agricultural activities have significantly impacted landscape transformation and fragmentation. The Albany Thicket Biome in the Eastern Cape Province stands out for its exceptional vegetation diversity and remarkable rates of species endemism. However, the relationship between agricultural activities and the Albany Thicket Biome has not received sufficient attention in the literature, creating a significant gap in understanding the extent of landscape transformation and the vegetation's recovery rate. This study aims to address this gap by utilising remote sensing technologies to investigate the LULCC specifically caused by pineapple cultivation in the Lower Albany area between 1984 and 2020. Analysis, using remotely sensed imagery and spatial analytical tools, provide accurate identification of pineapple fields and enable monitoring of their effects on LULCC dynamics across a wide spatial and temporal scale. Complementary field assessments examined the impacts of pineapple cultivation on land use and cover. Twelve image classifiers were tested to identify the most appropriate technique for mapping pineapple fields, and the Supervised Pixel-based Support Vector Machine (SVM) image classifier was found to be the most suitable. Utilising Landsat 4, 5, 7, and 8 satellite imagery, 27 land cover maps were created, spanning the period from 1984 to 2020. Additionally, field verification was conducted at 59 randomly generated sites to validate the findings. Spatial analysis of the data revealed that the pineapple industry in the study area has expanded by 733 hectares since 1984. Significant land use changes were observed, including converting land to wildlife ranches, grazing areas, and alternative agricultural practices. The land cover analysis identified the emergence of pioneer species in former pineapple fields, suggesting the potential for Albany Thicket regrowth if appropriately managed. This research contributes to a better understanding of the impacts of pineapple cultivation on the Albany Thicket Biome and provides valuable insights for land use planning and monitoring efforts. A comprehensive assessment of LULCC dynamics can be achieved by utilising remote sensing techniques, informing sustainable land management practices in the study area and beyond. , Thesis (MSc) -- Faculty of Science, Geography, 2024
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Investigating playing-related musculoskeletal disorders in South African instrumental musicians
- Authors: Green, Erryn Mae
- Date: 2024-04-04
- Subjects: Musculoskeletal disorder , Musculoskeletal system Diseases , Musicians Wounds and injuries , Musicians Health and hygiene , Human engineering South Africa , Musicians Health risk assessment , Biomechanics , Musical instruments , Music genre
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435310 , vital:73146
- Description: This study, one of the first studies in SA to investigate PRMD in a wideranging sample of instrumental musicians using a validated self-report tool, shows that PRMDs are highly prevalent among a range of SA musicians and have a considerably negative effect on musicians’ performance ability and quality of life. However, making inferences about most affected genre or instrumental group was challenging due to the small sample sizes in some categories. The results from this study confirm that the nature of PRMD development is indeed multi-factorial, with factors numerous individual and playing-related factors playing a role in the development of PRMDs in SA musicians. Better support and education on health promotion for musicians, including awareness of and prevention strategies for PRMDs in the SA context are needed which may reduce the prevalence of PRMDs. , Thesis (MSc) -- Faculty of Science, Human Kinetics and Ergonomics, 2024
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Investigating unimodal isolated signer-independent sign language recognition
- Authors: Marais, Marc Jason
- Date: 2024-04-04
- Subjects: Convolutional neural network , Sign language recognition , Human activity recognition , Pattern recognition systems , Neural networks (Computer science)
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435343 , vital:73149
- Description: Sign language serves as the mode of communication for the Deaf and Hard of Hearing community, embodying a rich linguistic and cultural heritage. Recent Sign Language Recognition (SLR) system developments aim to facilitate seamless communication between the Deaf community and the broader society. However, most existing systems are limited by signer-dependent models, hindering their adaptability to diverse signing styles and signers, thus impeding their practical implementation in real-world scenarios. This research explores various unimodal approaches, both pose-based and vision-based, for isolated signer-independent SLR using RGB video input on the LSA64 and AUTSL datasets. The unimodal RGB-only input strategy provides a realistic SLR setting where alternative data sources are either unavailable or necessitate specialised equipment. Through systematic testing scenarios, isolated signer-independent SLR experiments are conducted on both datasets, primarily focusing on AUTSL – a signer-independent dataset. The vision-based R(2+1)D-18 model emerged as the top performer, achieving 90.64% accuracy on the unseen AUTSL dataset test split, closely followed by the pose-based Spatio- Temporal Graph Convolutional Network (ST-GCN) model with an accuracy of 89.95%. Furthermore, these models achieved comparable accuracies at a significantly lower computational demand. Notably, the pose-based approach demonstrates robust generalisation to substantial background and signer variation. Moreover, the pose-based approach demands significantly less computational power and training time than vision-based approaches. The proposed unimodal pose-based and vision-based systems were concluded to both be effective at classifying sign classes in the LSA64 and AUTSL datasets. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2024
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It's all in your head
- Authors: Namukuta, Sonia Charity Sajjabi
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435536 , vital:73166
- Description: My thesis is a collection of short stories that delve into the multifaceted nature of death, with a specific emphasis on murder, violence, death and their profound aftermath, including themes of loss, grief, and trauma. These stories offer diverse perspectives, narrated by perpetrators, voiceless victims, and those left to pick up the shattered pieces. Additionally, some stories are seen through the eyes of those tasked with handling the bodies. Often set in unnamed locations, they delve into imaginary and fantastical worlds, while remaining grounded in recognisable situations and spaces. I draw inspiration from popular and genre fiction such as horror, crime fiction and true crime stories, but approach my writing from a psychological lens, employing stylistic experimentation to challenge readers' expectations. The power of silence is a recurring motif. Rather than focusing on unearthing facts or revealing the "truth" like crime fiction often does, my narratives delve into what isn't or at times cannot be told — the unsayable. Some of my stories explore silence inherent in violence, grief, and the inability to articulate one's experience in the face of a violent act or a life prematurely ended. Others delve into the silence of untold stories and the dark secrets of the perpetrators. By exploring these contrasting perspectives, I aim to offer a nuanced exploration of death and its aftermath. The writing styles of Stephen Graham Jones, Lydia Davis, and Kuzhali Manickavel influence my work. Lydia Davis, known for her mastery of very short, flash fiction, ranging from single sentences to a paragraph or two, inspires me with her precise observations of the human condition. Her minimalist prose, carefully selecting and arranging words and sentences, encapsulates the power of less-is-more storytelling. Manickavel creates surreal yet tangible worlds, combining idiosyncratic, intense and eerie elements with unfiltered expression. Drawing from her ability to blur the lines between the surreal and the real, I infuse my stories with a sense of disquieting authenticity. Stephen Graham Jones stands out for his ability to explore morbid themes in a compelling and unconventional manner. His experimentation with horror fiction tropes, the visceral realism of his prose, and his complex characters inspire me to capture the unsettling feeling that something dreadful has occurred without explicitly detailing the facts and intricacies. , Thesis (MA) -- Faculty of Humanities, School of Languages and Literatures, 2024
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Lemons or Lemonade? Examining the economic and social outcomes of engaging in the export-driven citrus value chain of South Africa for selected commercial citrus farmers and farm workers in the Raymond Mhlaba Municipal District, Eastern Cape
- Authors: Sizani, Simbulele
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435553 , vital:73168
- Description: This study examines the economic and social outcomes of participating in a global citrus value chain for selected commercial farmers and farm workers in Raymond Mhlaba Municipal District in the Eastern Cape, South Africa. A global chain refers to international production sharing through cross-border trade. Multilateral organizations (and some prominent global chain scholars) that support neoliberal economic globalization perceive global chains as ideal channels of economic and social upgrading for participants, particularly those from the global South. From the abovementioned perspective, global chains enhance efficiency through inter-firm relations that promote the distribution of technology and access to capital, thus leading to economic and social upgrading in developing countries. Economic upgrading, on the one hand, can briefly be described as the movement of supplier firms from lower to higher-value activities in global chains. Social upgrading, on the other hand, is the improvement of employment conditions and outcomes of workers employed by supplier firms at the production node of global chains. This study adopts the dual theoretical framework (Global Chain Framework and Labour Process Theory) proposed by Newsome, Taylor, Bair and Rainnie (2015) in their seminal book ‘Putting Labour in its Place: Labour Process Analysis and Global Value Chains’. This dual framework is ideal because it conceptualizes the spheres of trade exchange and production, which are the primary research sites of this study. Qualitative research methods were adopted and utilized to collect and analyse data in this study. These methods were ideal for this study, as they captured the subjective accounts of the selected commercial citrus farmers and farm workers in the Raymond Mhlaba Municipal District in the Eastern Cape, South Africa. The findings in this study showed that the outcomes of these selected commercial citrus farmers and farm workers in this region are variegated, meaning that, there is evidence of economic upgrading, social upgrading and social downgrading as well. Amongst farm workers in the region, only a small group of (mostly older male) farm workers enjoyed social upgrading, whilst the majority of seasonal (mostly female) farm workers experiences social downgrading. The findings in this study showed that the variegated economic and social outcomes of the selected commercial farmers and farm workers were primarily determined by their economic class and position within the citrus value chain of South Africa. These findings highlight the importance of positionality in determining the fate of participants in global chains. , Thesis (MA) -- Faculty of Humanities, Sociology, 2024
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Managing releases of Anagyrus vladimiri (Triapitsyn) to augment biocontrol of the citrus mealybug Planococcus citri (Risso) in South African citrus orchards
- Authors: Mommsen, Wayne Trevor
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/434952 , vital:73118
- Description: In May 2019, South Korean inspectors rejected numerous grapefruit consignments from Letsitele, Hoedspruit and Onderberg in South Arica, because of live mealybug found on fruit. Growers expressed deep concern as mealybug management to a phytosanitary level was almost unattainable. Regular spray interventions for control of citrus black spot fungus, Phyllosticta citricarpa, and citrus thrips, Scirtothrips aurantii, cause repercussions in mealybug populations because they undermine the naturally occurring biocontrol complex. As part of an Integrated Pest Management (IPM) strategy, release of commercially produced parasitoids is common practice, to augment the naturally occurring beneficial insect populations. Prior knowledge of the harmful effects of insecticides on parasitoids is essential to IPM planning and the success of the biocontrol component in such a programme. Timing of augmentative releases to coincide with the phenology of citrus and the mealybug pest is also considered important for the successful establishment and control. Consequently, field trials were conducted to compare efficacy of early vs. late releases of Anagyrus vladimiri (Triapitsyn), an effective parasitoid of the citrus mealybug, Planococcus citri (Risso). Semi-field bioassays were conducted concurrently to determine the impact of various thripicides on A. vladimiri. The impact of sulfoxaflor, spinetoram, spirotetramat and prothiofos were rated harmless, as A. vladimiri mortality was lower than 25% after coming into contact with aged residues between 7 and 14 days old. October and November releases of A. vladimiri resulted in early parasitism and lowered peak-infestation of mealybug. January releases are possibly too late in grapefruit and lemon, open field, orchards, considering parasitism by A. vladimiri peaked in February. In mandarin orchards under net, percentage parasitism of 3rd instar mealybug increased a month later. Notably, at harvest, the difference in efficacy between treatments was not clear. This could be explained by high levels of natural parasitism observed in the treated and untreated orchards, which emphasises the importance of conservation biocontrol. In a second season, the proportion of hyperparasitoids captured (61%) from samples of mealybug-infested fruit was larger than the proportion of primary parasitoids, Anagyrus vladimiri, Coccidoxenoides perminutus (Girault) and Leptomastix dactylopii (Howard) (39%), which was far lower than the captures of eclosing primary parasitoids the previous season, which was 60%. The new discovery of Pseudaphycus sp. in citrus orchards in South Africa could be a key in explaining the uncontrollable levels of mealybug experienced and has drawn attention to a need for further understanding of ecological factors that influence biological control in citrus. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2024
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MeerKAT observations of the Abell 141 galaxy cluster
- Authors: Stanbury, Savannah Mae
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435378 , vital:73152
- Description: This study is aimed at being an overview and investigation of the behaviour and morphology of radio quiet (RQ) active galactic nuclei (AGN) in the radio and optical/near-infrared (NIR) bands. It is hoped that a concise description of the relation that exists between accretion activity and star formation (SF) will be achieved through utilization of multiwavelength astronomy analysis. This analysis includes the processing of data acquired from the MeerKAT International GHz Tiered Extragalactic Exploration survey (MIGHTEE), the Southern African Large Telescope (SALT), the Hyper Suprime Camera (HSC) mounted on the Subaru telescope and the VISTA telescope. In this thesis, several targets were observed using SALT spectroscopy, but a redshift of only one of them was obtained. Lastly, it was established that for the sample of RQ AGN studied, the AGN contribute a large fraction of the radio emission observed. , Thesis (MSc) -- Faculty of Science, Physics and Electronics, 2024
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Paul and the soul: an analysis of the Apostle’s anthropology
- Authors: Pluke, Dylan Hay
- Date: 2024-04-04
- Subjects: Uncatalogued
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/435506 , vital:73164
- Description: It may be no exaggeration to say that every aspect of the Apostle Paul’s thought is debated. This is certainly the case for his anthropology, which is to say his beliefs regarding the nature of the human person. There is intense debate concerning what Paul believed about the human person. This is especially so when arguing about whether or not Paul believed in a human soul. In the thesis that follows, I use a linguistic analysis of Paul’s writings as well as those of two of his putative backgrounds, to determine what he believed regarding the nature of the human soul. The results of this analysis are that, of the potential backgrounds that may have influenced the Apostle, the Jewish background into which he was born is the most pertinent, and that neither of the two words that Paul uses mean soul, in the sense of something which is immaterial and survives death. Rather, the psyche refers to one’s life, and the pneuma to the part of the person that connects one with God and which will replace the psyche and animate the person in the new age to come. , Thesis (MA) -- Faculty of Humanities, School of Languages and Literatures, 2024
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