- Title
- Microsatellite and morphometric analysis of chokka squid (Loligo reynaudi) from different spawning aggregations around the South African coast
- Creator
- Stonier, Terence Anthony
- ThesisAdvisor
- Sauer, Warwick
- ThesisAdvisor
- Shaw, Paul
- ThesisAdvisor
- Lipinski, Marek
- Date
- 2013
- Type
- Thesis
- Type
- Masters
- Type
- MSc
- Identifier
- vital:5344
- Identifier
- http://hdl.handle.net/10962/d1006779
- Description
- Accurate information on stock structure is very important to the effective management of any commercially exploited species (Angel et al. 1994), particularly in annual species like Loligo reynaudi. Previous molecular work on a number of fish and cephalopod species has shown that stock structuring may be more complex than originally believed and while much scientific work has been conducted on Loligo reynaudi to date, molecular work has been lacking and this species’ fishery is currently managed as a single stock. The primary aim of this project was to examine the population genetics of Loligo reynaudi on a molecular level, by looking at the levels of genetic variation between different spawning aggregations along the inshore distribution of the chokka squid, with particular attention being paid to any variation between Eastern Cape and Agulhas Bank groups. The secondary aim was to conduct a morphological analysis on samples from the same major areas in order to see if any genetic variation observed would be complemented by phenotypic variation. Two separate sample sets were collected; Genetic samples were collected from 6 different spawning sites along the South African Coast between April and July, 2006 and whole individuals for morphometric analysis were collected from 4 spawning sites between April and July 2007. Samples were screened for genetic variation between different spawning aggregations along the inshore distribution of chokka squid, from Port Alfred in the Eastern Cape, to the western Agulhas Bank. After this a morphometric analysis on samples from the same major areas, Eastern Cape, Agulhas Bank and Angola, was carried out. Genetic results showed significant variation between some of the sample groups. As expected, the Angolan outgroup consistently showed significant variation from other samples, while there was evidence of differentiation between the South African samples themselves. These results could have implications for the previously documented life cycle model of Loligo reynaudi and provide a basis for further study at a finer resolution into where exactly the boundaries of these different groupings can be found. This stock structuring has implications for the management of the species and warrants further genetic research with microsatellites proving to be a powerful tool in the explanation of stock structuring. Unfortunately, due to possible errors in taking measurements, morphometric analysis did not yield useful results which can be described and interpreted in this study. It is felt that further genetic study conducted on a finer scale, should be accompanied by a repeat of the morphometric analysis.
- Format
- 92 leaves, pdf
- Publisher
- Rhodes University, Faculty of Science, Ichthyology and Fisheries Science
- Language
- English
- Rights
- Stonier, Terence Anthony
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