Environmental drivers of the composition and distribution of larval fish assemblages off the south coast of South Africa
- Authors: Trassierra, Jaqueline Anne
- Date: 2019
- Subjects: Fishes -- Larvae -- South Africa -- Eastern Cape , Fishes -- Larvae -- Migration -- South Africa -- Eastern Cape , Fishes -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68154 , vital:29207
- Description: The species composition, distribution and patterns of vertical migration of larval fish assemblages were investigated in March and in September 2013 within two adjacent log spiral bays, Algoa Bay and St Francis Bay, on the south coast of South Africa. Fish larvae were collected by means of a boat towed bongo net (57 cm diameter; mesh aperture 500 μm). An onshore (2 km) and an offshore (3 km) station were each sampled twice during the daytime (06:00 – 18:00) with two horizontal tows: near the surface (0.5 m) and close to the bottom (12 m). Tows were repeated at night (18:00 – 23:00) for onshore sites. Larval catches included 16 fish families and 40 species. A multivariate analysis indicated that the species composition was significantly different between Algoa Bay and St Francis Bay, with Engraulidae, Blenniidae, Sparidae, Soleidae and Cynoglossidae making important contributions to the larval fish catch in Algoa Bay, while Blenniidae, Engraulidae, Tripterygiidae, Sparidae and Gobiesocidae contributed significantly in St Francis Bay. Differences in assemblage composition were noted between the Spring (September–October) and Autumn (March-April) months. The species composition of larval fish assemblages was related to wind speed, wave height, cloud cover, sea water temperature, depth, average current speed and direction. Wind speed, wave height, temperature and depth significantly contributed to the variation in larval fish densities. Abundances of larval fishes were greater offshore than onshore, larvae from pelagic eggs dominated catches offshore, while larvae from demersal eggs dominated onshore catches. Habitat structure strongly influenced the composition of larval fishes between the bays and abundances were significantly greater at night than during the day. Most larval fishes displayed a reverse diel vertical migration pattern and were most influenced by predators, wind speed and cloud cover. This study shows that larval fish assemblages are highly complex and patchy. Spawning mode, individual species behaviour, diel vertical migration, current structure, depth, temperature, wind speed, cloud cover and type of habitat substratum all influence larval fish composition and distribution in the nearshore waters of South Africa.
- Full Text:
- Authors: Trassierra, Jaqueline Anne
- Date: 2019
- Subjects: Fishes -- Larvae -- South Africa -- Eastern Cape , Fishes -- Larvae -- Migration -- South Africa -- Eastern Cape , Fishes -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/68154 , vital:29207
- Description: The species composition, distribution and patterns of vertical migration of larval fish assemblages were investigated in March and in September 2013 within two adjacent log spiral bays, Algoa Bay and St Francis Bay, on the south coast of South Africa. Fish larvae were collected by means of a boat towed bongo net (57 cm diameter; mesh aperture 500 μm). An onshore (2 km) and an offshore (3 km) station were each sampled twice during the daytime (06:00 – 18:00) with two horizontal tows: near the surface (0.5 m) and close to the bottom (12 m). Tows were repeated at night (18:00 – 23:00) for onshore sites. Larval catches included 16 fish families and 40 species. A multivariate analysis indicated that the species composition was significantly different between Algoa Bay and St Francis Bay, with Engraulidae, Blenniidae, Sparidae, Soleidae and Cynoglossidae making important contributions to the larval fish catch in Algoa Bay, while Blenniidae, Engraulidae, Tripterygiidae, Sparidae and Gobiesocidae contributed significantly in St Francis Bay. Differences in assemblage composition were noted between the Spring (September–October) and Autumn (March-April) months. The species composition of larval fish assemblages was related to wind speed, wave height, cloud cover, sea water temperature, depth, average current speed and direction. Wind speed, wave height, temperature and depth significantly contributed to the variation in larval fish densities. Abundances of larval fishes were greater offshore than onshore, larvae from pelagic eggs dominated catches offshore, while larvae from demersal eggs dominated onshore catches. Habitat structure strongly influenced the composition of larval fishes between the bays and abundances were significantly greater at night than during the day. Most larval fishes displayed a reverse diel vertical migration pattern and were most influenced by predators, wind speed and cloud cover. This study shows that larval fish assemblages are highly complex and patchy. Spawning mode, individual species behaviour, diel vertical migration, current structure, depth, temperature, wind speed, cloud cover and type of habitat substratum all influence larval fish composition and distribution in the nearshore waters of South Africa.
- Full Text:
Large scale spatio-temporal forcing of pelagic-coastal coupling: disentangling the effects of environmental change on intertidal invertebrate recruitment
- Authors: Muñiz, Carlota Fernández
- Date: 2019
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/75317 , vital:30400
- Description: Marine systems are driven by the relationships among organisms and environmental conditions. Anthropogenic-induced changes during the past decades have started to alter climatic drivers which have the potential to alter the physical, chemical and biological environment. In coastal systems, biogeography is influenced by the temporal variability in the conditions of the water mass. In addition, many marine benthic organisms develop in the water mass and rely on the conditions that link the pelagic and benthic systems for population maintenance. Such pelagic-coastal coupling indicates that changes in the trophic system during development can be transferred to the adult populations through changes in propagule supply. Thus, changes in environmental conditions can influence benthic populations directly (e.g. through larval advection) or indirectly, through their influence on the phytoplankton community (e.g. through the development of HABs). The South African coastline shows clear alongshore patterns of faunal biomass and species richness. On the south coast, strong longitudinal patterns of recruitment of intertidal organisms exist, with areas of particularly high recruitment. HABs of unprecedented spatio-temporal magnitude have recently developed along the south coast, including the areas where benthic recruitment is most intense. The present thesis used these blooms to study changes in intertidal recruitment directly or indirectly associated with their occurrence. Using a combination of remote sensing data to study the environmental conditions of the water mass in the innermost part of the Agulhas Bank, and estimates of mussel and barnacle recruitment rates to integrate the effects of conditions in the water mass during larval development, this thesis aimed to: (1) understand the conditions that triggered the development of an HAB of the dinoflagellate Lingulodinium polyedrum during summer of 2014, (2) determine the direct or indirect effects of that bloom on recruitment of intertidal organisms, and understand the factors that affect recruitment along the coast, (3) determine if the environmental factors during bloom development produced any carryover effects on recruit growth and mortality, and (4) determine the factors that drive changes in community biomass and composition along the south coast, the long-term trends in those factors, and possible changes experienced in recent years. Water column stability during spring, before the development of the red tide, followed by alternating periods of upwelling and relaxation during summer and autumn, seemed to promote the development and persistence of L. polyedrum. Recruitment of mussels and barnacles was estimated during the reproductive season of mussels in 2014, coinciding with the red tide, and during the following year. Alongshore patterns in recruitment were found, with higher mussel recruitment in the absence of the red tide and the opposite pattern in barnacles. Alongshore patterns in SST and chlorophyll matching those of recruitment were also found, with higher SSTs and lower chlorophyll during the red tide than the following year. Growth and mortality rates in barnacles did not differ between years during the first five months after settlement. This suggests that the factors which produced differences in recruitment between years did not produce carryover effects detectable at the temporal scales studied. Further analysis of 15 years of satellite-derived environmental data showed significant cooling trends potentially driven by a long-term seasonal acceleration of the Agulhas Current in autumn around two upwelling centres on the south coast, coinciding temporally with the reproductive period of mussels and barnacles, and spatially with the areas of highest recruitment. In addition, the comparison of SST and chl-a conditions during the first and the second half of the period of study showed that seasonality of both variables has changed in large areas over the shelf, with increasing importance of shorter-term variability, which would in turn decrease environmental predictability. Thus, the conditions observed during the present study, particularly during 2015, when upwelling seemed to be more intense, may presage the potential effects of identified long-term cooling trends at the upwelling centres. Although the general trend shows cooling around those areas, conditions can vary greatly among years, favouring different taxa. Changes in the Agulhas Current System are affected by changes in distant areas in the Indian Ocean basin. Such tele-connection is unlikely to be unique to this system and indicates the importance of understanding trends in major large scale climatic drivers and their regional effects in order to make predictions about coastal systems.
- Full Text:
- Authors: Muñiz, Carlota Fernández
- Date: 2019
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/75317 , vital:30400
- Description: Marine systems are driven by the relationships among organisms and environmental conditions. Anthropogenic-induced changes during the past decades have started to alter climatic drivers which have the potential to alter the physical, chemical and biological environment. In coastal systems, biogeography is influenced by the temporal variability in the conditions of the water mass. In addition, many marine benthic organisms develop in the water mass and rely on the conditions that link the pelagic and benthic systems for population maintenance. Such pelagic-coastal coupling indicates that changes in the trophic system during development can be transferred to the adult populations through changes in propagule supply. Thus, changes in environmental conditions can influence benthic populations directly (e.g. through larval advection) or indirectly, through their influence on the phytoplankton community (e.g. through the development of HABs). The South African coastline shows clear alongshore patterns of faunal biomass and species richness. On the south coast, strong longitudinal patterns of recruitment of intertidal organisms exist, with areas of particularly high recruitment. HABs of unprecedented spatio-temporal magnitude have recently developed along the south coast, including the areas where benthic recruitment is most intense. The present thesis used these blooms to study changes in intertidal recruitment directly or indirectly associated with their occurrence. Using a combination of remote sensing data to study the environmental conditions of the water mass in the innermost part of the Agulhas Bank, and estimates of mussel and barnacle recruitment rates to integrate the effects of conditions in the water mass during larval development, this thesis aimed to: (1) understand the conditions that triggered the development of an HAB of the dinoflagellate Lingulodinium polyedrum during summer of 2014, (2) determine the direct or indirect effects of that bloom on recruitment of intertidal organisms, and understand the factors that affect recruitment along the coast, (3) determine if the environmental factors during bloom development produced any carryover effects on recruit growth and mortality, and (4) determine the factors that drive changes in community biomass and composition along the south coast, the long-term trends in those factors, and possible changes experienced in recent years. Water column stability during spring, before the development of the red tide, followed by alternating periods of upwelling and relaxation during summer and autumn, seemed to promote the development and persistence of L. polyedrum. Recruitment of mussels and barnacles was estimated during the reproductive season of mussels in 2014, coinciding with the red tide, and during the following year. Alongshore patterns in recruitment were found, with higher mussel recruitment in the absence of the red tide and the opposite pattern in barnacles. Alongshore patterns in SST and chlorophyll matching those of recruitment were also found, with higher SSTs and lower chlorophyll during the red tide than the following year. Growth and mortality rates in barnacles did not differ between years during the first five months after settlement. This suggests that the factors which produced differences in recruitment between years did not produce carryover effects detectable at the temporal scales studied. Further analysis of 15 years of satellite-derived environmental data showed significant cooling trends potentially driven by a long-term seasonal acceleration of the Agulhas Current in autumn around two upwelling centres on the south coast, coinciding temporally with the reproductive period of mussels and barnacles, and spatially with the areas of highest recruitment. In addition, the comparison of SST and chl-a conditions during the first and the second half of the period of study showed that seasonality of both variables has changed in large areas over the shelf, with increasing importance of shorter-term variability, which would in turn decrease environmental predictability. Thus, the conditions observed during the present study, particularly during 2015, when upwelling seemed to be more intense, may presage the potential effects of identified long-term cooling trends at the upwelling centres. Although the general trend shows cooling around those areas, conditions can vary greatly among years, favouring different taxa. Changes in the Agulhas Current System are affected by changes in distant areas in the Indian Ocean basin. Such tele-connection is unlikely to be unique to this system and indicates the importance of understanding trends in major large scale climatic drivers and their regional effects in order to make predictions about coastal systems.
- Full Text:
Large scale spatio-temporal forcing of pelagic-coastal coupling: disentangling the effects of environmental change on intertidal invertebrate recruitment
- Authors: Muñiz, Carlota Fernández
- Date: 2019
- Subjects: Dinoflagellates -- South Africa , Coastal ecology -- South Africa , Climatic changes -- South Africa , Benthic ecology -- South Africa , Agulhas Current , Ocean temperature -- Agulhas Current , Ocean temperature -- Physiological effect
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/151541 , vital:39140
- Description: Marine systems are driven by the relationships among organisms and environmental conditions. Anthropogenic-induced changes during the past decades have started to alter climatic drivers which have the potential to alter the physical, chemical and biological environment. In coastal systems, biogeography is influenced by the temporal variability in the conditions of the water mass. In addition, many marine benthic organisms develop in the water mass and rely on the conditions that link the pelagic and benthic systems for population maintenance. Such pelagic-coastal coupling indicates that changes in the trophic system during development can be transferred to the adult populations through changes in propagule supply. Thus, changes in environmental conditions can influence benthic populations directly (e.g. through larval advection) or indirectly, through their influence on the phytoplankton community (e.g. through the development of HABs). The South African coastline shows clear alongshore patterns of faunal biomass and species richness. On the south coast, strong longitudinal patterns of recruitment of intertidal organisms exist, with areas of particularly high recruitment. HABs of unprecedented spatio-temporal magnitude have recently developed along the south coast, including the areas where benthic recruitment is most intense. The present thesis used these blooms to study changes in intertidal recruitment directly or indirectly associated with their occurrence. Using a combination of remote sensing data to study the environmental conditions of the water mass in the innermost part of the Agulhas Bank, and estimates of mussel and barnacle recruitment rates to integrate the effects of conditions in the water mass during larval development, this thesis aimed to: (1) understand the conditions that triggered the development of an HAB of the dinoflagellate Lingulodinium polyedrum during summer of 2014, (2) determine the direct or indirect effects of that bloom on recruitment of intertidal organisms, and understand the factors that affect recruitment along the coast, (3) determine if the environmental factors during bloom development produced any carryover effects on recruit growth and mortality, and (4) determine the factors that drive changes in community biomass and composition along the south coast, the long-term trends in those factors, and possible changes experienced in recent years. Water column stability during spring, before the development of the red tide, followed by alternating periods of upwelling and relaxation during summer and autumn, seemed to promote the development and persistence of L. polyedrum. Recruitment of mussels and barnacles was estimated during the reproductive season of mussels in 2014, coinciding with the red tide, and during the following year. Alongshore patterns in recruitment were found, with higher mussel recruitment in the absence of the red tide and the opposite pattern in barnacles. Alongshore patterns in SST and chlorophyll matching those of recruitment were also found, with higher SSTs and lower chlorophyll during the red tide than the following year. Growth and mortality rates in barnacles did not differ between years during the first five months after settlement. This suggests that the factors which produced differences in recruitment between years did not produce carryover effects detectable at the temporal scales studied. Further analysis of 15 years of satellite-derived environmental data showed significant cooling trends potentially driven by a long-term seasonal acceleration of the Agulhas Current in autumn around two upwelling centres on the south coast, coinciding temporally with the reproductive period of mussels and barnacles, and spatially with the areas of highest recruitment. In addition, the comparison of SST and chl-a conditions during the first and the second half of the period of study showed that seasonality of both variables has changed in large areas over the shelf, with increasing importance of shorter-term variability, which would in turn decrease environmental predictability. Thus, the conditions observed during the present study, particularly during 2015, when upwelling seemed to be more intense, may presage the potential effects of identified long-term cooling trends at the upwelling centres. Although the general trend shows cooling around those areas, conditions can vary greatly among years, favouring different taxa. Changes in the Agulhas Current System are affected by changes in distant areas in the Indian Ocean basin. Such tele-connection is unlikely to be unique to this system and indicates the importance of understanding trends in major large scale climatic drivers and their regional effects in order to make predictions about coastal systems.
- Full Text:
- Authors: Muñiz, Carlota Fernández
- Date: 2019
- Subjects: Dinoflagellates -- South Africa , Coastal ecology -- South Africa , Climatic changes -- South Africa , Benthic ecology -- South Africa , Agulhas Current , Ocean temperature -- Agulhas Current , Ocean temperature -- Physiological effect
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/151541 , vital:39140
- Description: Marine systems are driven by the relationships among organisms and environmental conditions. Anthropogenic-induced changes during the past decades have started to alter climatic drivers which have the potential to alter the physical, chemical and biological environment. In coastal systems, biogeography is influenced by the temporal variability in the conditions of the water mass. In addition, many marine benthic organisms develop in the water mass and rely on the conditions that link the pelagic and benthic systems for population maintenance. Such pelagic-coastal coupling indicates that changes in the trophic system during development can be transferred to the adult populations through changes in propagule supply. Thus, changes in environmental conditions can influence benthic populations directly (e.g. through larval advection) or indirectly, through their influence on the phytoplankton community (e.g. through the development of HABs). The South African coastline shows clear alongshore patterns of faunal biomass and species richness. On the south coast, strong longitudinal patterns of recruitment of intertidal organisms exist, with areas of particularly high recruitment. HABs of unprecedented spatio-temporal magnitude have recently developed along the south coast, including the areas where benthic recruitment is most intense. The present thesis used these blooms to study changes in intertidal recruitment directly or indirectly associated with their occurrence. Using a combination of remote sensing data to study the environmental conditions of the water mass in the innermost part of the Agulhas Bank, and estimates of mussel and barnacle recruitment rates to integrate the effects of conditions in the water mass during larval development, this thesis aimed to: (1) understand the conditions that triggered the development of an HAB of the dinoflagellate Lingulodinium polyedrum during summer of 2014, (2) determine the direct or indirect effects of that bloom on recruitment of intertidal organisms, and understand the factors that affect recruitment along the coast, (3) determine if the environmental factors during bloom development produced any carryover effects on recruit growth and mortality, and (4) determine the factors that drive changes in community biomass and composition along the south coast, the long-term trends in those factors, and possible changes experienced in recent years. Water column stability during spring, before the development of the red tide, followed by alternating periods of upwelling and relaxation during summer and autumn, seemed to promote the development and persistence of L. polyedrum. Recruitment of mussels and barnacles was estimated during the reproductive season of mussels in 2014, coinciding with the red tide, and during the following year. Alongshore patterns in recruitment were found, with higher mussel recruitment in the absence of the red tide and the opposite pattern in barnacles. Alongshore patterns in SST and chlorophyll matching those of recruitment were also found, with higher SSTs and lower chlorophyll during the red tide than the following year. Growth and mortality rates in barnacles did not differ between years during the first five months after settlement. This suggests that the factors which produced differences in recruitment between years did not produce carryover effects detectable at the temporal scales studied. Further analysis of 15 years of satellite-derived environmental data showed significant cooling trends potentially driven by a long-term seasonal acceleration of the Agulhas Current in autumn around two upwelling centres on the south coast, coinciding temporally with the reproductive period of mussels and barnacles, and spatially with the areas of highest recruitment. In addition, the comparison of SST and chl-a conditions during the first and the second half of the period of study showed that seasonality of both variables has changed in large areas over the shelf, with increasing importance of shorter-term variability, which would in turn decrease environmental predictability. Thus, the conditions observed during the present study, particularly during 2015, when upwelling seemed to be more intense, may presage the potential effects of identified long-term cooling trends at the upwelling centres. Although the general trend shows cooling around those areas, conditions can vary greatly among years, favouring different taxa. Changes in the Agulhas Current System are affected by changes in distant areas in the Indian Ocean basin. Such tele-connection is unlikely to be unique to this system and indicates the importance of understanding trends in major large scale climatic drivers and their regional effects in order to make predictions about coastal systems.
- Full Text:
Mesoscale alongshore and cross-shore transport and settlement of invertebrate larvae on the south east coast of South Africa
- Authors: Dyantyi, Siphelele Buntu
- Date: 2019
- Subjects: Marine invertebrates -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Benthic animals -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mexilhao mussel -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mytilus galloprovincialis -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Oysters -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/97007 , vital:31386
- Description: Pelagic larval stages of most marine benthic species are important in maintaining coastal populations of adults. Several physio-chemical factors such as currents, winds, larval behaviour and time have an influence on the dispersal and transport of larvae to the adult habitat but their role is however still poorly understood. The aim of this study was to investigate the alongshore and cross-shore transport and temporal delivery of invertebrate larvae at four sites (Kenton on Sea, Cannon Rocks, Schoenmakerskop and Cape St Francis) along the south east coast of Eastern Cape, South Africa. Larval distribution of several taxa was determined during two sampling periods, by collecting water samples at nearshore line transects (3 distances: 900m, 1500m and 2400m – perpendicular to the shore) and at three depths (surface, thermocline/middle, bottom), which ranged from 15m (inshore) to 50m (offshore). Physical properties (current speed and direction, dissolved oxygen, fluorescence, turbidity, temperature, salinity, pH, pressure, density and conductivity) were measured and coupled in order to further understand larval distribution. The larvae were analysed as both total abundance and separately as the abundances of a variety of taxa which were: Perna perna, Mytilus galloprovincialis, oysters, early and late nauplii and cyprids. Larval settlement and recruitment on the rocky shores were measured by monthly deployment and collection of 20 (10 each for barnacles and mussels) artificial collectors at each site, which were preserved in ethanol or frozen for further processing. Multiple Permutational Multivariate Analysis of Variance (PERMANOVA) analyses were used to test the effects of site, depth and distance from the shore for the nearshore larvae (taxa analysed separately). In addition, a distance based linear model (distLM) was performed to analyse the relationship between the total larval abundance and the above mentioned physical variables. Multiple two-way analyses of variance (ANOVA) were performed to test the effects of months and sites on the settlement and recruitment of the larvae (P. perna, M. galloprovincialis, other bivalves, cyprids and juvenile barnacles) arriving on the shore. For the nearshore larval distribution, results from the PERMANOVAs revealed that most taxa showed a significant site and depth interactions with the exception of ‘early nauplii’ taxon. Also nearly all taxa were found within the thermocline, besides ‘oyster’ and ‘cyprids’ which were located at thermocline or bottom. Larvae were also located at variable distances from the shore, with most occurring at the offshore stations. Furthermore, there was a geographical separation of larval abundance according to sites, with most larvae located at Cannon Rocks and Kenton on Sea and least at Schoenmakerskop and Cape St Francis. For the settlement and recruitment, most taxa showed a seasonal trend, with the highest abundance of settlers and recruits expectedly appearing during the summer months of the sampling period. Additionally there was a site effect for most taxa (P. perna, M. galloprovincialis, other bivalves and juvenile barnacles), where settlers and recruits were mostly found at Cannon Rocks. Significant differences in abundance of settlers and recruits amongst the four sites indicate spatial and temporal variability for the targeted 180km stretch of coast. Overall for this study, taxon and ontogenetic stage of larvae were important in the distribution and abundance of larvae. Throughout the time frame of nearshore and intertidal sampling, Cannon Rocks consistently resulted as a ‘hot spot’ for larval abundance, settlement and recruitment, while a broad west to east separation was also observed. These results hence highlight that within this stretch of c.180km coast, time, taxon, ontogeny and post-settlement factors influence early dynamics of benthic populations.
- Full Text:
- Authors: Dyantyi, Siphelele Buntu
- Date: 2019
- Subjects: Marine invertebrates -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Benthic animals -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mexilhao mussel -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Mytilus galloprovincialis -- Larvae -- Dispersal -- South Africa -- Eastern Cape , Oysters -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/97007 , vital:31386
- Description: Pelagic larval stages of most marine benthic species are important in maintaining coastal populations of adults. Several physio-chemical factors such as currents, winds, larval behaviour and time have an influence on the dispersal and transport of larvae to the adult habitat but their role is however still poorly understood. The aim of this study was to investigate the alongshore and cross-shore transport and temporal delivery of invertebrate larvae at four sites (Kenton on Sea, Cannon Rocks, Schoenmakerskop and Cape St Francis) along the south east coast of Eastern Cape, South Africa. Larval distribution of several taxa was determined during two sampling periods, by collecting water samples at nearshore line transects (3 distances: 900m, 1500m and 2400m – perpendicular to the shore) and at three depths (surface, thermocline/middle, bottom), which ranged from 15m (inshore) to 50m (offshore). Physical properties (current speed and direction, dissolved oxygen, fluorescence, turbidity, temperature, salinity, pH, pressure, density and conductivity) were measured and coupled in order to further understand larval distribution. The larvae were analysed as both total abundance and separately as the abundances of a variety of taxa which were: Perna perna, Mytilus galloprovincialis, oysters, early and late nauplii and cyprids. Larval settlement and recruitment on the rocky shores were measured by monthly deployment and collection of 20 (10 each for barnacles and mussels) artificial collectors at each site, which were preserved in ethanol or frozen for further processing. Multiple Permutational Multivariate Analysis of Variance (PERMANOVA) analyses were used to test the effects of site, depth and distance from the shore for the nearshore larvae (taxa analysed separately). In addition, a distance based linear model (distLM) was performed to analyse the relationship between the total larval abundance and the above mentioned physical variables. Multiple two-way analyses of variance (ANOVA) were performed to test the effects of months and sites on the settlement and recruitment of the larvae (P. perna, M. galloprovincialis, other bivalves, cyprids and juvenile barnacles) arriving on the shore. For the nearshore larval distribution, results from the PERMANOVAs revealed that most taxa showed a significant site and depth interactions with the exception of ‘early nauplii’ taxon. Also nearly all taxa were found within the thermocline, besides ‘oyster’ and ‘cyprids’ which were located at thermocline or bottom. Larvae were also located at variable distances from the shore, with most occurring at the offshore stations. Furthermore, there was a geographical separation of larval abundance according to sites, with most larvae located at Cannon Rocks and Kenton on Sea and least at Schoenmakerskop and Cape St Francis. For the settlement and recruitment, most taxa showed a seasonal trend, with the highest abundance of settlers and recruits expectedly appearing during the summer months of the sampling period. Additionally there was a site effect for most taxa (P. perna, M. galloprovincialis, other bivalves and juvenile barnacles), where settlers and recruits were mostly found at Cannon Rocks. Significant differences in abundance of settlers and recruits amongst the four sites indicate spatial and temporal variability for the targeted 180km stretch of coast. Overall for this study, taxon and ontogenetic stage of larvae were important in the distribution and abundance of larvae. Throughout the time frame of nearshore and intertidal sampling, Cannon Rocks consistently resulted as a ‘hot spot’ for larval abundance, settlement and recruitment, while a broad west to east separation was also observed. These results hence highlight that within this stretch of c.180km coast, time, taxon, ontogeny and post-settlement factors influence early dynamics of benthic populations.
- Full Text:
Using captive seabirds to assess knowledge gaps in stable isotope analysis of diets
- Authors: Micklem, Isabel Andrea
- Date: 2019
- Subjects: Stable isotopes -- Analysis African penguin -- South Africa Breeding
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/65101 , vital:28686
- Description: Stable isotope (SI) ratios of carbon (δ13C) and nitrogen (δ15N) are now widely used as biomarkers in ecological studies to provide information about food web structuring. However, understanding trophic relationships using SI analysis requires not only knowledge of SI values of predator and prey, but also accurate discrimination factors (DFs), which can differ among species and by physiological state. This thesis examined three questions using captive birds from the South African Foundation for the Conservation of Coastal Birds (SANCCOB). First, the effects of ontogeny on δ13C and δ15N ratios of African penguins (Spheniscus demersus) were assessed. Blood samples were collected from penguins in four age classes (P3 chicks, blues, juveniles and adults) concurrently with their diet (sardine (Sardinops sagax) and formula). Second, to assess the influence of breeding physiology on SI ratios, the blood of ten breeding pairs of penguins was sampled over a five-month period from June to October 2016. Following laying, each pair was categorised into one of three (four for whole blood) egg production phases (initial yolk deposition, rapid yolk deposition and post-laying) and their influences on SI ratios were tested. Third, species differences in DFs were evaluated for African penguins, kelp and Hartlaub’s gulls (Larus dominicanus and L. hartlaubii), greater crested terns (Thalasseus bergii) and Cape cormorants (Phalacrocorax capensis). Flying birds were mostly fed sardine with a small but unknown amount of sardinella (Sardinella aurita), DFs were therefore estimated for a 50:50 sardine:sardinella diet, a 75:25 sardine:sardinella diet and a 100% sardine diet for each flying bird species. The DFs were assessed for the whole blood (WB), red blood cells (RBC), plasma (PL) and delipidated plasma of the penguins, and only WB for the flying birds as well as flesh, whole fish, delipidated flesh and delipidated whole fish for fish species, and for formula. Results indicated that age influenced both the δ13C and δ15N of WB, only the δ15N of RBC and the δ13C of delipidated PL. The assessment of breeding physiology yielded a significant interaction between the effects of egg production phase and sex on the δ13C of WB; females had significantly lower δ13C in the rapid yolk deposition phase than the other two phases and all males. The δ13C of PL was affected only by sex, with females having a significantly lower δ13C value than males. Neither physiological state nor sex influenced the other blood components. Differences were found among the three DFs in the non-penguin species, but not for all consumer – prey tissue combinations. There were also significant differences among species with a DF calculated from a diet with the most probable prey proportions eaten. Depending on the combination of consumer and prey tissue used to calculate the DF, a different conclusion regarding trophic information can be reached. A literature review updated with the present data showed that no general pattern or grouping of similar species with regards to DF values could be drawn, highlighting the importance of determining species- and tissue-specific DFs. Thus age, egg production, tissue and species all influenced the SI values of bird blood and therefore their DFs. Not all physiological conditions affect all blood components in the same way, making different components more or less sensitive to physiological influences. Though their influence is at a small enough scale that it is unlikely to hamper correct conclusion in ecological studies, it is crucial that these factors are considered when using SI analysis (SIA). When uncertainties exist for some coefficients in wild studies, SIA should therefore be combined to other dietary techniques to determine the food web structure as best as possible.
- Full Text:
- Authors: Micklem, Isabel Andrea
- Date: 2019
- Subjects: Stable isotopes -- Analysis African penguin -- South Africa Breeding
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/65101 , vital:28686
- Description: Stable isotope (SI) ratios of carbon (δ13C) and nitrogen (δ15N) are now widely used as biomarkers in ecological studies to provide information about food web structuring. However, understanding trophic relationships using SI analysis requires not only knowledge of SI values of predator and prey, but also accurate discrimination factors (DFs), which can differ among species and by physiological state. This thesis examined three questions using captive birds from the South African Foundation for the Conservation of Coastal Birds (SANCCOB). First, the effects of ontogeny on δ13C and δ15N ratios of African penguins (Spheniscus demersus) were assessed. Blood samples were collected from penguins in four age classes (P3 chicks, blues, juveniles and adults) concurrently with their diet (sardine (Sardinops sagax) and formula). Second, to assess the influence of breeding physiology on SI ratios, the blood of ten breeding pairs of penguins was sampled over a five-month period from June to October 2016. Following laying, each pair was categorised into one of three (four for whole blood) egg production phases (initial yolk deposition, rapid yolk deposition and post-laying) and their influences on SI ratios were tested. Third, species differences in DFs were evaluated for African penguins, kelp and Hartlaub’s gulls (Larus dominicanus and L. hartlaubii), greater crested terns (Thalasseus bergii) and Cape cormorants (Phalacrocorax capensis). Flying birds were mostly fed sardine with a small but unknown amount of sardinella (Sardinella aurita), DFs were therefore estimated for a 50:50 sardine:sardinella diet, a 75:25 sardine:sardinella diet and a 100% sardine diet for each flying bird species. The DFs were assessed for the whole blood (WB), red blood cells (RBC), plasma (PL) and delipidated plasma of the penguins, and only WB for the flying birds as well as flesh, whole fish, delipidated flesh and delipidated whole fish for fish species, and for formula. Results indicated that age influenced both the δ13C and δ15N of WB, only the δ15N of RBC and the δ13C of delipidated PL. The assessment of breeding physiology yielded a significant interaction between the effects of egg production phase and sex on the δ13C of WB; females had significantly lower δ13C in the rapid yolk deposition phase than the other two phases and all males. The δ13C of PL was affected only by sex, with females having a significantly lower δ13C value than males. Neither physiological state nor sex influenced the other blood components. Differences were found among the three DFs in the non-penguin species, but not for all consumer – prey tissue combinations. There were also significant differences among species with a DF calculated from a diet with the most probable prey proportions eaten. Depending on the combination of consumer and prey tissue used to calculate the DF, a different conclusion regarding trophic information can be reached. A literature review updated with the present data showed that no general pattern or grouping of similar species with regards to DF values could be drawn, highlighting the importance of determining species- and tissue-specific DFs. Thus age, egg production, tissue and species all influenced the SI values of bird blood and therefore their DFs. Not all physiological conditions affect all blood components in the same way, making different components more or less sensitive to physiological influences. Though their influence is at a small enough scale that it is unlikely to hamper correct conclusion in ecological studies, it is crucial that these factors are considered when using SI analysis (SIA). When uncertainties exist for some coefficients in wild studies, SIA should therefore be combined to other dietary techniques to determine the food web structure as best as possible.
- Full Text:
A community–wide trophic structure analysis in intertidal ecosystems on the south coast of South Africa
- Authors: Gusha, Molline Natanah C
- Date: 2018
- Subjects: Food chains (Ecology) , Coastal ecology -- South Africa , Intertidal ecology -- South Africa , Marine animals -- Climatic factors -- South Africa , Marine animals -- Food -- South Africa , Marine animals -- Habitat -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63312 , vital:28392
- Description: Coastal ecosystems are more than microhabitats for marine species. Acting as atmospheric carbon filters, species in coastal environments are directly and/or indirectly associated with transferring organic carbon to species at higher trophic levels. However, the progressing change in global climatic conditions has created the need to assess the consequences of the shifting conditions on both direct and indirect interactions of physical and biological parameters at species and/or community levels. From these perturbations, the effects of biotic homogenization on ecosystem functioning and resilience can also be realised. Herein, I discuss the effects of temperature, nutrients, biotic interactions and habitat characteristics on community dynamics within intertidal rock pool systems on the south coast of South Africa using complementary qualitative and quantitative analytical methods. Seasonality had a significant impact on rock pool species with changes in composition and higher richness in winter than summer. The first two axes of the Canonical Correspondence Analysis (CCA) of the plant and animal communities each explained ~20% of the relationship between physico-chemical parameters and biological variables. The CCA highlighted that seasonal shifts in chlorophyll-a, conductivity, salinity, water depth, surface area and substratum type indirectly influenced species composition. For example, pools with heterogenous substratum comprising a mixture of sand and rock exhibited higher species diversity than homogenously bedded pools. Furthermore, a Bayesian analysis of community structure based on stable isotope ratios was used to assess how trophic pathways of carbon and nitrogen elements reflected community composition and richness. Isotopic biplots showed an increase in food web size, food chain length and the trophic positions of fish and some gastropods in winter compared to summer. There was greater dietary overlap among species in larger pools. In addition, while isotopic nearest neighbour distance and species evenness also showed a positive increase with pool size in summer, the same metrics were almost constant across all pool sizes in winter. These changes in food web packing and species evenness suggest seasonal preferences or migration of species in summer from small pools to larger pools with stable physico-chemical parameters. Furthermore, the presence of fish was seen to promote trophic diversity within some pools. The results from laboratory microcosm grazing experiments demonstrated significant direct and indirect effects of temperature and nutrients within plankton communities. Copepod grazing had an indirect positive influence on phytoplankton biomass and size structure while the interactive effects of temperature and nutrients had contrasting effects on both phytoplankton communities and copepod biomass. Shifts in water chemistry and nutrient treatments were also observed in the presence of copepods. Phosphate addition had a recognisable impact on plankton communities. The presented synthesis of the literature mainly highlighted that positive effects at one trophic level do not always positively cascade into the next trophic level which is evidence of complex interactive biotic, habitat and water chemistry effects within these intertidal ecosystems. Thus, to further understand cascading effects or community structure functioning in general, there may be a need to incorporate and understand species functional traits and how they contribute to trophic diversity, community restructuring and functioning in coastal habitats.
- Full Text:
- Authors: Gusha, Molline Natanah C
- Date: 2018
- Subjects: Food chains (Ecology) , Coastal ecology -- South Africa , Intertidal ecology -- South Africa , Marine animals -- Climatic factors -- South Africa , Marine animals -- Food -- South Africa , Marine animals -- Habitat -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63312 , vital:28392
- Description: Coastal ecosystems are more than microhabitats for marine species. Acting as atmospheric carbon filters, species in coastal environments are directly and/or indirectly associated with transferring organic carbon to species at higher trophic levels. However, the progressing change in global climatic conditions has created the need to assess the consequences of the shifting conditions on both direct and indirect interactions of physical and biological parameters at species and/or community levels. From these perturbations, the effects of biotic homogenization on ecosystem functioning and resilience can also be realised. Herein, I discuss the effects of temperature, nutrients, biotic interactions and habitat characteristics on community dynamics within intertidal rock pool systems on the south coast of South Africa using complementary qualitative and quantitative analytical methods. Seasonality had a significant impact on rock pool species with changes in composition and higher richness in winter than summer. The first two axes of the Canonical Correspondence Analysis (CCA) of the plant and animal communities each explained ~20% of the relationship between physico-chemical parameters and biological variables. The CCA highlighted that seasonal shifts in chlorophyll-a, conductivity, salinity, water depth, surface area and substratum type indirectly influenced species composition. For example, pools with heterogenous substratum comprising a mixture of sand and rock exhibited higher species diversity than homogenously bedded pools. Furthermore, a Bayesian analysis of community structure based on stable isotope ratios was used to assess how trophic pathways of carbon and nitrogen elements reflected community composition and richness. Isotopic biplots showed an increase in food web size, food chain length and the trophic positions of fish and some gastropods in winter compared to summer. There was greater dietary overlap among species in larger pools. In addition, while isotopic nearest neighbour distance and species evenness also showed a positive increase with pool size in summer, the same metrics were almost constant across all pool sizes in winter. These changes in food web packing and species evenness suggest seasonal preferences or migration of species in summer from small pools to larger pools with stable physico-chemical parameters. Furthermore, the presence of fish was seen to promote trophic diversity within some pools. The results from laboratory microcosm grazing experiments demonstrated significant direct and indirect effects of temperature and nutrients within plankton communities. Copepod grazing had an indirect positive influence on phytoplankton biomass and size structure while the interactive effects of temperature and nutrients had contrasting effects on both phytoplankton communities and copepod biomass. Shifts in water chemistry and nutrient treatments were also observed in the presence of copepods. Phosphate addition had a recognisable impact on plankton communities. The presented synthesis of the literature mainly highlighted that positive effects at one trophic level do not always positively cascade into the next trophic level which is evidence of complex interactive biotic, habitat and water chemistry effects within these intertidal ecosystems. Thus, to further understand cascading effects or community structure functioning in general, there may be a need to incorporate and understand species functional traits and how they contribute to trophic diversity, community restructuring and functioning in coastal habitats.
- Full Text:
The role of upwelling in determining the composition, species distribution and genetic structure of intertidal communities in a time of climate change
- Lourenço, Carla Sofia Emídio Rodrigues
- Authors: Lourenço, Carla Sofia Emídio Rodrigues
- Date: 2018
- Subjects: Upwelling (Oceanography) , Intertidal organisms -- Morocco -- Atlantic Coast , Intertidal organisms -- Canary Current -- Effect of water currents on , Intertidal animals -- Canary Current -- Effect of water currents on , Intertidal animals -- Morocco -- Atlantic Coas , Mytilus galloprovincialis -- Morocco -- Atlantic Coast , Mytilus galloprovincialis -- Canary Current -- Effect of water currents on , Intertidal ecology -- Canary Current , Sea surface microlayer -- Morocco -- Atlantic Coast
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/61614 , vital:28042
- Description: Upwelling is an oceanographic process that strongly influences coastal species and the communities they belong to. In upwelling areas, colder, denser, nutrient-rich subsurface waters are transported to the nearshore surface, replacing warmer superficial waters that are advected offshore. Such effects influence the composition and dynamics of coastal communities, for example by affecting species abundance, recruitment, dispersal and distribution. Upwelling areas are key model regions to study the responses of coastal species to climate change because they are characterized by cooler conditions and experience lower warming rates than adjacent regions. In particular, intertidal rocky shore species are ideal coastal sentinel organisms to study distributional changes driven by climate warming because they inhabit the interface between marine and terrestrial habitats and are exposed to extremely severe environmental conditions. In fact, sharp distributional shifts have been reported for multiple intertidal species as a response to ocean warming. Although some studies have investigated the role of upwelling in influencing abundance and distribution of intertidal species, little is known about its potential as refugia against climate warming and the degree to which upwelling shapes species genetic structure is yet not fully understood. The aim of this thesis is to understand the influence of the Canary Current upwelling system on intertidal community composition, including species distribution and the genetic structure of intertidal species under current climate change. To do this, I investigated community structure of intertidal assemblages along the Atlantic shores of Morocco and Western Sahara, performed large scale surveys on species distribution, evaluated species abundance and frequency of parasitism and examined species genetic patterns. I further coupled biological data with upwelling indices, sea surface temperatures (SST) and the rate of SST warming. I demonstrate that strong upwelling influences abundance and distribution of intertidal rocky shore species and that upwelling cells can act as refugia from climate change by ameliorating thermal conditions. Upwelling cells also conserve the genetic diversity of the marine macroalga Fucus guiryi, promoting intraspecific genetic diversity by preserving unique genetic lineages. However, no evidence was found that upwelling affects the genetic structure for either F. guiryi or the brown mussel Perna perna. Instead, the genetic patterns presented in this thesis seem to result from a combination of species’ life history traits, population size and habitat suitability. My results also suggest that upwelling intensity affects the frequency of endolithic parasitism on the Mediterranean mussel Mytilus galloprovincialis. In times of climate change, upwelling events provide suitable environmental conditions for species to counter act climatic change. As upwelling is project to intensify in the future, its influence on benthic intertidal species might be greater than previously anticipated.
- Full Text:
- Authors: Lourenço, Carla Sofia Emídio Rodrigues
- Date: 2018
- Subjects: Upwelling (Oceanography) , Intertidal organisms -- Morocco -- Atlantic Coast , Intertidal organisms -- Canary Current -- Effect of water currents on , Intertidal animals -- Canary Current -- Effect of water currents on , Intertidal animals -- Morocco -- Atlantic Coas , Mytilus galloprovincialis -- Morocco -- Atlantic Coast , Mytilus galloprovincialis -- Canary Current -- Effect of water currents on , Intertidal ecology -- Canary Current , Sea surface microlayer -- Morocco -- Atlantic Coast
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/61614 , vital:28042
- Description: Upwelling is an oceanographic process that strongly influences coastal species and the communities they belong to. In upwelling areas, colder, denser, nutrient-rich subsurface waters are transported to the nearshore surface, replacing warmer superficial waters that are advected offshore. Such effects influence the composition and dynamics of coastal communities, for example by affecting species abundance, recruitment, dispersal and distribution. Upwelling areas are key model regions to study the responses of coastal species to climate change because they are characterized by cooler conditions and experience lower warming rates than adjacent regions. In particular, intertidal rocky shore species are ideal coastal sentinel organisms to study distributional changes driven by climate warming because they inhabit the interface between marine and terrestrial habitats and are exposed to extremely severe environmental conditions. In fact, sharp distributional shifts have been reported for multiple intertidal species as a response to ocean warming. Although some studies have investigated the role of upwelling in influencing abundance and distribution of intertidal species, little is known about its potential as refugia against climate warming and the degree to which upwelling shapes species genetic structure is yet not fully understood. The aim of this thesis is to understand the influence of the Canary Current upwelling system on intertidal community composition, including species distribution and the genetic structure of intertidal species under current climate change. To do this, I investigated community structure of intertidal assemblages along the Atlantic shores of Morocco and Western Sahara, performed large scale surveys on species distribution, evaluated species abundance and frequency of parasitism and examined species genetic patterns. I further coupled biological data with upwelling indices, sea surface temperatures (SST) and the rate of SST warming. I demonstrate that strong upwelling influences abundance and distribution of intertidal rocky shore species and that upwelling cells can act as refugia from climate change by ameliorating thermal conditions. Upwelling cells also conserve the genetic diversity of the marine macroalga Fucus guiryi, promoting intraspecific genetic diversity by preserving unique genetic lineages. However, no evidence was found that upwelling affects the genetic structure for either F. guiryi or the brown mussel Perna perna. Instead, the genetic patterns presented in this thesis seem to result from a combination of species’ life history traits, population size and habitat suitability. My results also suggest that upwelling intensity affects the frequency of endolithic parasitism on the Mediterranean mussel Mytilus galloprovincialis. In times of climate change, upwelling events provide suitable environmental conditions for species to counter act climatic change. As upwelling is project to intensify in the future, its influence on benthic intertidal species might be greater than previously anticipated.
- Full Text:
Oxygen limitation and thermal tolerance: a comparison of pulmonate and patellogastropod limpets
- Authors: Kankondi, Sebbi
- Date: 2017
- Subjects: Thermal tolerance (Physiology) , Limpets -- Physiology , Limpets -- Effect of temperature on , Oxygen consumption (Physiology)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7570 , vital:21274
- Description: Since the scientific community anticipates a general change in the global climate, it has become increasingly important to develop predictive models which encompass mechanisms to generate reliable forecasts of the effects this change on ecological communities and processes. To this end, the oxygen- and capacity- limited thermal tolerance (OCLTT) theory has been developed as a link between various physiological processes, the thermal aspect of climate change and the associated shifts at different levels of biological organization. This study set out to assess the general applicability of the OCLTT theory in eurythermal pulmonate and patellogastropod limpets, whose distributions overlap on the high shore rocks of the warm temperate, south-east coast of South Africa.This was done by determining their microhabitat use, median lethal temperatures and cardiac, Arrhenius breakpoint temperatures as measures of their upper thermal tolerance limits, in both air and water. The main hypotheses of the study were that the pulmonate limpets would be more common than the patellogastropods in warmer microhabitats during low tide and would have higher thermal limits than the patellogastropods in air and vice versa in water. This was based on the assumption that the two limpet groups have different capabilities of oxygen consumption in air and water, due to differences in their respiratory organs and that this would be reflected in their thermal tolerances based on predictions made by the OCLTT. This assumption was important because oxygen consumption was not measured in this study. Previous research (e.g. Garrity, 1984), showed that a thermal stress gradient exists among rocky intertidal microhabitats. From most to least thermally stressful the gradient is horizontal surfaces> slopes> vertical surfaces> tide pools> crevices. The current study found that, while the pulmonate limpets, Siphonaria capensis and S. serrata, preferred rock pools, sloped, vertical and horizontal rock surfaces, the patellogastropod limpets, Cellana capensis and Scutellastra granularis, preferred rock pools and vertical rock surfaces. Furthermore, the pulmonate limpets were only common on horizontal rock surfaces where specific ameliorating conditions would have mitigated thermal stress there. In addition, C. capensis had similar thermal tolerance limits to the pulmonate limpets in air and the pulmonate limpets had similar and/or higher thermal tolerance limits compared to S. granularis in water. This indicates that the pulmonate limpets did not necessarily prefer warmer microhabitats than the patellogastropod limpets and that there were no differences in the collective upper thermal tolerance limits between the two limpet groups in either medium.Consequently, there was no indication from this study that an assumed superior capacity for oxygen supply translates into greater thermal tolerance and that the hypotheses based on the OCLTT were not supported. Although this was an indirect test of the OCLTT theory, I conclude that this study does not support the notion of its general applicability and that mechanisms other than those outlined by the OCLTT theory may help explain the patterns of thermal limitation observed in the current study.
- Full Text:
- Authors: Kankondi, Sebbi
- Date: 2017
- Subjects: Thermal tolerance (Physiology) , Limpets -- Physiology , Limpets -- Effect of temperature on , Oxygen consumption (Physiology)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7570 , vital:21274
- Description: Since the scientific community anticipates a general change in the global climate, it has become increasingly important to develop predictive models which encompass mechanisms to generate reliable forecasts of the effects this change on ecological communities and processes. To this end, the oxygen- and capacity- limited thermal tolerance (OCLTT) theory has been developed as a link between various physiological processes, the thermal aspect of climate change and the associated shifts at different levels of biological organization. This study set out to assess the general applicability of the OCLTT theory in eurythermal pulmonate and patellogastropod limpets, whose distributions overlap on the high shore rocks of the warm temperate, south-east coast of South Africa.This was done by determining their microhabitat use, median lethal temperatures and cardiac, Arrhenius breakpoint temperatures as measures of their upper thermal tolerance limits, in both air and water. The main hypotheses of the study were that the pulmonate limpets would be more common than the patellogastropods in warmer microhabitats during low tide and would have higher thermal limits than the patellogastropods in air and vice versa in water. This was based on the assumption that the two limpet groups have different capabilities of oxygen consumption in air and water, due to differences in their respiratory organs and that this would be reflected in their thermal tolerances based on predictions made by the OCLTT. This assumption was important because oxygen consumption was not measured in this study. Previous research (e.g. Garrity, 1984), showed that a thermal stress gradient exists among rocky intertidal microhabitats. From most to least thermally stressful the gradient is horizontal surfaces> slopes> vertical surfaces> tide pools> crevices. The current study found that, while the pulmonate limpets, Siphonaria capensis and S. serrata, preferred rock pools, sloped, vertical and horizontal rock surfaces, the patellogastropod limpets, Cellana capensis and Scutellastra granularis, preferred rock pools and vertical rock surfaces. Furthermore, the pulmonate limpets were only common on horizontal rock surfaces where specific ameliorating conditions would have mitigated thermal stress there. In addition, C. capensis had similar thermal tolerance limits to the pulmonate limpets in air and the pulmonate limpets had similar and/or higher thermal tolerance limits compared to S. granularis in water. This indicates that the pulmonate limpets did not necessarily prefer warmer microhabitats than the patellogastropod limpets and that there were no differences in the collective upper thermal tolerance limits between the two limpet groups in either medium.Consequently, there was no indication from this study that an assumed superior capacity for oxygen supply translates into greater thermal tolerance and that the hypotheses based on the OCLTT were not supported. Although this was an indirect test of the OCLTT theory, I conclude that this study does not support the notion of its general applicability and that mechanisms other than those outlined by the OCLTT theory may help explain the patterns of thermal limitation observed in the current study.
- Full Text:
Assessing the impact of climate change on mangrove crabs: the role of ontogenetic macrophysiology and settlement in the persistence of central and marginal populations
- Authors: Mostert, Bruce Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/826 , vital:19994
- Description: After a brief respite in the mid to late 20th century, macro physiology has come to the fore in elucidating large scale ecological patterns and processes as physiological assumptions often form the backbone of many predictive theories associated with species distributions. Critically, macro physiological patterns are valuable in explaining physiological variation across multiple scales and provide insights into the effects of climate change on populations spanning a wide range of latitudes. This can assist in predicting possible distribution expansions, contractions or shifts in light of current climate change scenarios. From this perspective, investigating intra- and inter-specific physiological responses to environmental stress may contribute to better understanding and predicting the effects of climate change on geographical ranges. Further, investigating the physiological effects to environmental stresses across ontogenetic stages allows for the identification of weak links within the lifecycle of a species. Additionally, determining settlement characteristics along a latitudinal cline provides integrated indications of the sustainability of populations, highlighting vulnerable regions in terms of repopulation of viable habitats. In this context, the present study aimed at establishing how temperature, in a physiological context, may affect reproductive biology of two species of mangrove crab, Perisesarma guttatum and Uca urvillei at the centre (Kenya) and edge (South Africa) of their distributional range along the east coast of Africa and highlight possible consequences for range distributions. A third species, Neosarmatium africanum, only in South Africa, was included to provide additional interspecies comparisons. Furthermore, settlement characteristics of brachyuran populations at the centre and edge of their distributional range were considered in order to determine how settlement may contribute to population persistence. Physiological investigations at the centre and edge of distributional range and across ontogenetic stages (larvae, stage 2 and 4 embryos, non-gravid and gravid females) under the concept of oxygen and capacity limitation of thermal tolerance (OCLTT), revealed that, for both species, populations at the centre of their distribution (Kenya) were generally more robust to increasing temperatures and generally displayed greater physiological stability with increasing temperatures compared to their conspecifics in South Africa. Variability in physiological robustness between regions, did however, differ among ontogenetic stages and species but, overall, were evident throughout. Within and between regions, adaptation to oxygen extraction in both milieus (air or water) was displayed for present temperature conditions but aerial respiration largely alleviated increased thermal stress due to overcoming the limitations of reduced oxygen availability and diffusiveness in water for all bimodal ontogenetic stages. Brooding eggs proved to be a physiologically critical process with either heighted oxygen consumption for gravid females or collapse of physiological processes demonstrated by supressed oxygen consumption. The physiological cost of brooding eggs, referred to as maternal costs, was reflected in in both Perisesarma guttatum and Uca urvillei where, in most cases, maternal costs were negative. Again, aerial respiration was able to alleviated increased thermal stress, as shown by positive maternal costs indicating sustained maternal care, but this mechanism was species and regionally specific. Settlement patterns differed between the edge and centre of distribution of the species studied. This difference was predominantly driven by zonal preference within the mangal and/or effects of new and full moon (lunar phase). Overall, settlement dynamics were more widely variable in South Africa, both spatially and temporally, than in Kenya. Finally, empirical physiological data from ontogenetic stages present during the reproductive process (early and late stage embryos) and from non-gravid and gravid females were used in conjunction with data mined from the existing literature to parameterise an individual based model designed to simulate reproductive output at the centre and edge of distribution of Perisesarma guttatum. Physiological data indicate that, in terms of reproductive output across increasing temperatures, populations based at the centre of their distribution presently outperform their counterparts at the edge of the species’ distribution, but reproductive output stagnated as temperature rose. Edge of distribution populations consistently increased reproductive output with increasing temperatures to eventually outperform centre of distribution populations at higher simulated temperatures. Overall, results of the physiological and settlement studies suggest that with increased climate change there may be a contraction of distributional range of the study species from high latitudes to low latitudes, contrary to general poleward shifts/migrations seen in most species, with possible contractions of the entire ecosystem mirroring the disappearance of keystone mangrove macrofauna.
- Full Text:
- Authors: Mostert, Bruce Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/826 , vital:19994
- Description: After a brief respite in the mid to late 20th century, macro physiology has come to the fore in elucidating large scale ecological patterns and processes as physiological assumptions often form the backbone of many predictive theories associated with species distributions. Critically, macro physiological patterns are valuable in explaining physiological variation across multiple scales and provide insights into the effects of climate change on populations spanning a wide range of latitudes. This can assist in predicting possible distribution expansions, contractions or shifts in light of current climate change scenarios. From this perspective, investigating intra- and inter-specific physiological responses to environmental stress may contribute to better understanding and predicting the effects of climate change on geographical ranges. Further, investigating the physiological effects to environmental stresses across ontogenetic stages allows for the identification of weak links within the lifecycle of a species. Additionally, determining settlement characteristics along a latitudinal cline provides integrated indications of the sustainability of populations, highlighting vulnerable regions in terms of repopulation of viable habitats. In this context, the present study aimed at establishing how temperature, in a physiological context, may affect reproductive biology of two species of mangrove crab, Perisesarma guttatum and Uca urvillei at the centre (Kenya) and edge (South Africa) of their distributional range along the east coast of Africa and highlight possible consequences for range distributions. A third species, Neosarmatium africanum, only in South Africa, was included to provide additional interspecies comparisons. Furthermore, settlement characteristics of brachyuran populations at the centre and edge of their distributional range were considered in order to determine how settlement may contribute to population persistence. Physiological investigations at the centre and edge of distributional range and across ontogenetic stages (larvae, stage 2 and 4 embryos, non-gravid and gravid females) under the concept of oxygen and capacity limitation of thermal tolerance (OCLTT), revealed that, for both species, populations at the centre of their distribution (Kenya) were generally more robust to increasing temperatures and generally displayed greater physiological stability with increasing temperatures compared to their conspecifics in South Africa. Variability in physiological robustness between regions, did however, differ among ontogenetic stages and species but, overall, were evident throughout. Within and between regions, adaptation to oxygen extraction in both milieus (air or water) was displayed for present temperature conditions but aerial respiration largely alleviated increased thermal stress due to overcoming the limitations of reduced oxygen availability and diffusiveness in water for all bimodal ontogenetic stages. Brooding eggs proved to be a physiologically critical process with either heighted oxygen consumption for gravid females or collapse of physiological processes demonstrated by supressed oxygen consumption. The physiological cost of brooding eggs, referred to as maternal costs, was reflected in in both Perisesarma guttatum and Uca urvillei where, in most cases, maternal costs were negative. Again, aerial respiration was able to alleviated increased thermal stress, as shown by positive maternal costs indicating sustained maternal care, but this mechanism was species and regionally specific. Settlement patterns differed between the edge and centre of distribution of the species studied. This difference was predominantly driven by zonal preference within the mangal and/or effects of new and full moon (lunar phase). Overall, settlement dynamics were more widely variable in South Africa, both spatially and temporally, than in Kenya. Finally, empirical physiological data from ontogenetic stages present during the reproductive process (early and late stage embryos) and from non-gravid and gravid females were used in conjunction with data mined from the existing literature to parameterise an individual based model designed to simulate reproductive output at the centre and edge of distribution of Perisesarma guttatum. Physiological data indicate that, in terms of reproductive output across increasing temperatures, populations based at the centre of their distribution presently outperform their counterparts at the edge of the species’ distribution, but reproductive output stagnated as temperature rose. Edge of distribution populations consistently increased reproductive output with increasing temperatures to eventually outperform centre of distribution populations at higher simulated temperatures. Overall, results of the physiological and settlement studies suggest that with increased climate change there may be a contraction of distributional range of the study species from high latitudes to low latitudes, contrary to general poleward shifts/migrations seen in most species, with possible contractions of the entire ecosystem mirroring the disappearance of keystone mangrove macrofauna.
- Full Text:
Ecological engineering on rocky shores: grazing, predation, nutrient availability and their influence on epifaunal communities
- Authors: Ndhlovu, Aldwin
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3453 , vital:20500
- Description: “Ecosystem engineers modify, create/destroy habitat and directly/indirectly modulate availability of resources to other species by causing physical state changes to biotic and abiotic materials” (Jones et al, 1994, page 1). Previous studies have analysed top-down and bottom-up relationships to determine which form of regulation is key in controlling community composition. This study assessed the direct and indirect effects of top down and bottom up factors on the epifaunal communities of macro-algae. Epifauna are subject to the direct top-down effects of predation and bottom up effects of habitat availability. Habitat availability in turn experiences the direct top down effects of grazing and bottom up effects of nutrient availability due to upwelling. Grazing and upwelling may therefore have indirect effects on macro-algal epifauna. Four treatments (Procedural controls, Controls, Predator or Grazer exclusion) set out in a block design (n = 5) were monitored monthly for algal cover of the substratum for 12 months with the surface area of algal plants and epifaunal species composition and abundances assessed at the end of the experiment. The red alga Gelidium pristoides was selected as the ecosystem engineer as it is common, supports a diverse community of epiphytic animals and acts as a nursery for small epifaunal organisms. The experiment was run at two upwelling sites interspersed with two non-upwelling sites. Sites were separated on scales of 100km along approximately 500km of coastline. Dipping whole algae in dish washing liquid provided a strong relationship between their surface area and the weight of the film of dish washing liquid covering them. Surface area was strongly correlated to dry weight but neither surface area nor dry weight was correlated to algal cover of the substratum. Algal cover was influenced by the interactions of treatment with site (nested in upwelling) and upwelling. At all sites, treatments that allowed access to grazers, Grazer + and Control treatments, showed no significant differences and these two treatments had lower algal cover than Predator + and Closed treatments which did not differ from one another 3 [Grazer + = Control < Predator + = Closed]. A total of 44 epifaunal species were identified, with the predominant orders being Amphipoda and Isopoda. Primer results showed that only site had a significant effect on species composition, with sites that were further apart being more different. Site (nested in upwelling) had an effect on total epifaunal abundances when data were non-normalised. When total epifaunal abundances were normalised for algal cover of the substratum or algal surface area to provide density data, predation had no significant effect. Grazing did have a significant effect, but only when data were normalised to algal surface area, not cover, leading to the conclusion that indirect top-down factors through grazing of the sea weed are important in structuring epifaunal communities depending on how habitat availability is measured.
- Full Text:
- Authors: Ndhlovu, Aldwin
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3453 , vital:20500
- Description: “Ecosystem engineers modify, create/destroy habitat and directly/indirectly modulate availability of resources to other species by causing physical state changes to biotic and abiotic materials” (Jones et al, 1994, page 1). Previous studies have analysed top-down and bottom-up relationships to determine which form of regulation is key in controlling community composition. This study assessed the direct and indirect effects of top down and bottom up factors on the epifaunal communities of macro-algae. Epifauna are subject to the direct top-down effects of predation and bottom up effects of habitat availability. Habitat availability in turn experiences the direct top down effects of grazing and bottom up effects of nutrient availability due to upwelling. Grazing and upwelling may therefore have indirect effects on macro-algal epifauna. Four treatments (Procedural controls, Controls, Predator or Grazer exclusion) set out in a block design (n = 5) were monitored monthly for algal cover of the substratum for 12 months with the surface area of algal plants and epifaunal species composition and abundances assessed at the end of the experiment. The red alga Gelidium pristoides was selected as the ecosystem engineer as it is common, supports a diverse community of epiphytic animals and acts as a nursery for small epifaunal organisms. The experiment was run at two upwelling sites interspersed with two non-upwelling sites. Sites were separated on scales of 100km along approximately 500km of coastline. Dipping whole algae in dish washing liquid provided a strong relationship between their surface area and the weight of the film of dish washing liquid covering them. Surface area was strongly correlated to dry weight but neither surface area nor dry weight was correlated to algal cover of the substratum. Algal cover was influenced by the interactions of treatment with site (nested in upwelling) and upwelling. At all sites, treatments that allowed access to grazers, Grazer + and Control treatments, showed no significant differences and these two treatments had lower algal cover than Predator + and Closed treatments which did not differ from one another 3 [Grazer + = Control < Predator + = Closed]. A total of 44 epifaunal species were identified, with the predominant orders being Amphipoda and Isopoda. Primer results showed that only site had a significant effect on species composition, with sites that were further apart being more different. Site (nested in upwelling) had an effect on total epifaunal abundances when data were non-normalised. When total epifaunal abundances were normalised for algal cover of the substratum or algal surface area to provide density data, predation had no significant effect. Grazing did have a significant effect, but only when data were normalised to algal surface area, not cover, leading to the conclusion that indirect top-down factors through grazing of the sea weed are important in structuring epifaunal communities depending on how habitat availability is measured.
- Full Text:
Mesoscale mechanisms of larval transport and settlement in relation to physical factors off the south coast of South Africa: a topographic approach
- Authors: Mian, Shana Iva
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5947 , http://hdl.handle.net/10962/d1020844
- Description: The majority of benthic marine invertebrate life cycles include a meroplanktonic phase. Most marine biologists recognise that this stage could play an important role in dispersal, especially for sedentary or sessile organisms. Recent studies on larval dispersal have found that dispersal does not occur to the extent that was previously believed. Some larvae instead remain close to their natal populations through larval nearshore retention mechanisms, both active and passive. This study attempted to a) describe nearshore distribution patterns of several intertidal larvae in relation to nearshore hydrodynamics, b) infer whether larvae are active or passive in the water column and whether this differs among taxa and c) compare pelagic mussel larval abundance with settlement rates, at 2 bay and 2 open coast sites on the south coast of South Africa to note any topographical effects. At each of the four sites, pelagic samples were collected along 2 transects. Larvae and current speed data were collected at various depths (surface, mid-depth and bottom) at distances of 200, 400, 900 and 2400m offshore of the coast. Settlement samples were collected at sites that were onshore of the pelagic transects using plastic souring pads following previous studies. Pelagic larval distribution showed no effect of topography. Instead larval abundance was highly variable among sample periods and among different taxa. Slow swimming D-stage mussel larvae were found to be positively correlated with both upwelling and turbulence indices suggesting that they behave as passive particles in the water column. The abundances of larval taxa with faster swimming speeds than the D-larvae were negatively correlated with upwelling and did not correlate with turbulence. This suggests that these larvae are more active within the water column than the D-larvae which would theoretically allow them to maintain their position in the water column. Further analysis revealed that mean larval depth correlated with mean depth of shoreward moving water masses regardless of the state of upwelling. These results suggest that larvae were actively selecting the depth at which they were found presumably in order to associate themselves with shoreward moving currents. This interpretation was supported by ontogenetic patterns in the behaviour of barnacle larvae, the nauplii of which were found further offshore as they aged, and closer onshore again once they reach the faster swimming cyprid stage. Although there was no detectable effect of topography on the abundances of planktonic larvae, the settlement section of this study revealed an effect of topography, with higher settlement and recruitment rates at bay sites than at the open coast sites. Settlement rates were seen to be negatively correlated with turbulence at bay sites but not open coast sites. Recruitment rates for each sample event were positively correlated with upwelling at each site. This study found pelagic larvae to be generally active within the water column which allowed them to remain close to the shore regardless of topography and upwelling/turbulence regimes. Although meaningful correlation analyses between pelagic larval supply and settlement rates could not be conducted due to loss of settlement collectors, settlement rates were affected by local topography with higher settlement and recruitment in bay sites.
- Full Text:
- Authors: Mian, Shana Iva
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5947 , http://hdl.handle.net/10962/d1020844
- Description: The majority of benthic marine invertebrate life cycles include a meroplanktonic phase. Most marine biologists recognise that this stage could play an important role in dispersal, especially for sedentary or sessile organisms. Recent studies on larval dispersal have found that dispersal does not occur to the extent that was previously believed. Some larvae instead remain close to their natal populations through larval nearshore retention mechanisms, both active and passive. This study attempted to a) describe nearshore distribution patterns of several intertidal larvae in relation to nearshore hydrodynamics, b) infer whether larvae are active or passive in the water column and whether this differs among taxa and c) compare pelagic mussel larval abundance with settlement rates, at 2 bay and 2 open coast sites on the south coast of South Africa to note any topographical effects. At each of the four sites, pelagic samples were collected along 2 transects. Larvae and current speed data were collected at various depths (surface, mid-depth and bottom) at distances of 200, 400, 900 and 2400m offshore of the coast. Settlement samples were collected at sites that were onshore of the pelagic transects using plastic souring pads following previous studies. Pelagic larval distribution showed no effect of topography. Instead larval abundance was highly variable among sample periods and among different taxa. Slow swimming D-stage mussel larvae were found to be positively correlated with both upwelling and turbulence indices suggesting that they behave as passive particles in the water column. The abundances of larval taxa with faster swimming speeds than the D-larvae were negatively correlated with upwelling and did not correlate with turbulence. This suggests that these larvae are more active within the water column than the D-larvae which would theoretically allow them to maintain their position in the water column. Further analysis revealed that mean larval depth correlated with mean depth of shoreward moving water masses regardless of the state of upwelling. These results suggest that larvae were actively selecting the depth at which they were found presumably in order to associate themselves with shoreward moving currents. This interpretation was supported by ontogenetic patterns in the behaviour of barnacle larvae, the nauplii of which were found further offshore as they aged, and closer onshore again once they reach the faster swimming cyprid stage. Although there was no detectable effect of topography on the abundances of planktonic larvae, the settlement section of this study revealed an effect of topography, with higher settlement and recruitment rates at bay sites than at the open coast sites. Settlement rates were seen to be negatively correlated with turbulence at bay sites but not open coast sites. Recruitment rates for each sample event were positively correlated with upwelling at each site. This study found pelagic larvae to be generally active within the water column which allowed them to remain close to the shore regardless of topography and upwelling/turbulence regimes. Although meaningful correlation analyses between pelagic larval supply and settlement rates could not be conducted due to loss of settlement collectors, settlement rates were affected by local topography with higher settlement and recruitment in bay sites.
- Full Text:
Penguin parenting : assortative mating, nest attendance and sex-specific chick provisioning in the African Penguin (Spheniscus demersus)
- Authors: Smith, Diane Lauren
- Date: 2016
- Subjects: African penguin , Penguins -- South Africa , Penguins -- Sexual behavior , Parental behavior in animals
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5943 , http://hdl.handle.net/10962/d1019993
- Description: Animal behaviour is especially sensitive to environmental variability and prey availability during the breeding season, and this is particularly true for non-volant, central place foragers such as the endangered African Penguin (Spheniscus demersus). Individual sex and morphology, as well as the level of assortment within mated pairs can influence both the behaviour and the reproductive success of species exhibiting biparental care. This study made use of a large biometric database and nest attendance video footage to determine the influence of intrinsic (assortative mating, brood size and chick age) and extrinsic (environmental conditions, anthropic disturbance) factors on breeding behaviour and performance of African Penguins on Bird Island, Algoa Bay, during peak breeding (March - July) in 2013. While sexual dimorphism in African Penguins is subtle, the colony-specific discriminant functions presented here provide an accurate sexing tool when only bill and flipper length are available. Despite the premise that selection of a large, high-quality mate in this longlived, monogamous seabird governs lifetime fitness, only low levels of assortative mating were found, and this only for earlier breeders, when larger females (but not males) bred. The 2013 season was a particularly successful one, coinciding with above-average sardine and anchovy abundance, and almost 80 percent of monitored nests were double-brooded, with very low levels of mortality. A- and B-chicks of double broods and singleton chicks grew at similar rates and exhibited similar body condition indices. In these conditions, chick developmental rates were independent of parental size, assortment or provisioning behaviour. Females raising a double brood were significantly lighter and in poorer body condition than those raising a single chick, although the same trend was not evident in males. Offspring sex ratio in 2013 (2.27:1) favoured male chicks, suggesting that there is potential to over-produce the larger sex when resources are plentiful. Peak nest arrival and departure times of parents did not change over the course of monitored breeding attempts (March-June), nor were they different for disturbed and undisturbed nests or for a single or double brood. The increase in CCTV-observed provisioning rate as chicks grew larger was best explained by brood size, at-sea chlorophyll a concentration, and maximum air temperature, but was unrelated to parental morphology or assortative index. Importantly, parental absenteeism commenced earlier and was markedly greater in nests frequently handled by researchers than in undisturbed nests. Both the time spent together by parents, and absenteeism were measurably affected by maximum afternoon air temperatures, the effects of which are expected to be exacerbated by poorer foraging conditions and climate change. A third of manually-monitored nests shared chick-guarding duties unequally, although this phenomenon was independent of parental sex or morphology. The adaptive benefits of mating patterns and division of labour during chick-rearing may only become apparent in a year of below-average food availability and it is highly recommended that this study be repeated in a year of scarce food resources. These findings augment past foraging ecology studies and demonstrate that investigator disturbance and environmental conditions can affect the nesting behaviour of this highly threatened seabird.
- Full Text:
- Authors: Smith, Diane Lauren
- Date: 2016
- Subjects: African penguin , Penguins -- South Africa , Penguins -- Sexual behavior , Parental behavior in animals
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5943 , http://hdl.handle.net/10962/d1019993
- Description: Animal behaviour is especially sensitive to environmental variability and prey availability during the breeding season, and this is particularly true for non-volant, central place foragers such as the endangered African Penguin (Spheniscus demersus). Individual sex and morphology, as well as the level of assortment within mated pairs can influence both the behaviour and the reproductive success of species exhibiting biparental care. This study made use of a large biometric database and nest attendance video footage to determine the influence of intrinsic (assortative mating, brood size and chick age) and extrinsic (environmental conditions, anthropic disturbance) factors on breeding behaviour and performance of African Penguins on Bird Island, Algoa Bay, during peak breeding (March - July) in 2013. While sexual dimorphism in African Penguins is subtle, the colony-specific discriminant functions presented here provide an accurate sexing tool when only bill and flipper length are available. Despite the premise that selection of a large, high-quality mate in this longlived, monogamous seabird governs lifetime fitness, only low levels of assortative mating were found, and this only for earlier breeders, when larger females (but not males) bred. The 2013 season was a particularly successful one, coinciding with above-average sardine and anchovy abundance, and almost 80 percent of monitored nests were double-brooded, with very low levels of mortality. A- and B-chicks of double broods and singleton chicks grew at similar rates and exhibited similar body condition indices. In these conditions, chick developmental rates were independent of parental size, assortment or provisioning behaviour. Females raising a double brood were significantly lighter and in poorer body condition than those raising a single chick, although the same trend was not evident in males. Offspring sex ratio in 2013 (2.27:1) favoured male chicks, suggesting that there is potential to over-produce the larger sex when resources are plentiful. Peak nest arrival and departure times of parents did not change over the course of monitored breeding attempts (March-June), nor were they different for disturbed and undisturbed nests or for a single or double brood. The increase in CCTV-observed provisioning rate as chicks grew larger was best explained by brood size, at-sea chlorophyll a concentration, and maximum air temperature, but was unrelated to parental morphology or assortative index. Importantly, parental absenteeism commenced earlier and was markedly greater in nests frequently handled by researchers than in undisturbed nests. Both the time spent together by parents, and absenteeism were measurably affected by maximum afternoon air temperatures, the effects of which are expected to be exacerbated by poorer foraging conditions and climate change. A third of manually-monitored nests shared chick-guarding duties unequally, although this phenomenon was independent of parental sex or morphology. The adaptive benefits of mating patterns and division of labour during chick-rearing may only become apparent in a year of below-average food availability and it is highly recommended that this study be repeated in a year of scarce food resources. These findings augment past foraging ecology studies and demonstrate that investigator disturbance and environmental conditions can affect the nesting behaviour of this highly threatened seabird.
- Full Text:
Diet of coastal filter feeders : impact of factors operating at different scales
- Authors: Puccinelli, Eleonora
- Date: 2015
- Subjects: Benthic animals -- Ecology -- South Africa , Benthic animals -- Nutrition
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5929 , http://hdl.handle.net/10962/d1017807
- Description: Benthic filter feeders have a key functional role in the dynamics of coastal food web as an intermediate trophic level and bioengineers. A wide variety of factors, operating across multiple spatial scales (e.g. hydrographic regime, human activities), can affect the composition of the water column and thus the availability of food for benthic populations. Food availability in turn affects the growth, reproductive rates and survival of benthic organisms, and consequently, can influence the functioning of the entire ecosystem. This study aims to evaluate how various environmental factors may modify the diet of intertidal filter feeders living along the South African coast. Specifically, the effects of biogeography, upwelling, urbanization and freshwater input on the dietary regimes of five species of filter feeders (two mussel and three barnacle species) were investigated using fatty acid (FA) and stable isotope (SI) analyses.Strong interspecific differences were found among the five species considered. However, all species responded to factors operating at large (100s km) and meso (10s- 100s km) scales (i.e. biogeography and upwelling respectively). The barnacles exhibit habitat segregation and showed different FA and SI signatures from each other, while the two mussel species, an invasive and native species that co-occur in the same mussel beds, had partially overlapping diets. Differences in their diets were found only using FA analysis, while their SI signatures differed on only one occasion. This highlights the importance of using the appropriate tool, and ideally combined techniques, to investigate diets.FA and SI signatures of all species considered changed among the three biographical provinces (west, south and east coasts of South Africa) exhibiting similar patterns that reflect the two oceanographic regimes that characterize the coastline: the eutrophic Benguela Current on the west coast and the oligotrophic Agulhas Current on the other two coasts. Upwelling had a significant effect on FA and SI signatures, with stronger effects on the west coast than the south coast. The results indicate that benthic filter feeders at upwelling areas consumed a mix of coastal macroalgal detritus and phytoplankton, which was probably brought onshore during downwelling events. At smaller spatialscales and using repeated sampling, the influence of upwelling on the west coast was found to be pervasive, rather than discrete, so that it may be more appropriate to categorize upwelling by referring to upwelling centres and downstream areas. SI underlined a significant effect of urbanization on the diet of filter feeders with an enrichment in the δ¹⁵N being characteristic of anthropogenic effect. Although a large number of rivers characterize the South African coast, no distinct effect of freshwater input was found for either the SI or FA signatures of the filter feeders. This contrasts with earlier work on demersal species and suggests that freshwater input does not significantly affect food availability for intertidal filter feeders, and that other factors (e.g. hydrogeography) are more important in determining the diet of these populations. These results highlight that environmental and anthropogenic factors operating at different spatial and temporal scales have a profound effect on benthic ecosystems, and that they control the relationship between primary production and primary consumers in coastal areas. Above all, this work highlights the importance of understanding the spatial and temporal scales at which different factors affect feeding regimes, and their critical role in coastal food webs.
- Full Text:
- Authors: Puccinelli, Eleonora
- Date: 2015
- Subjects: Benthic animals -- Ecology -- South Africa , Benthic animals -- Nutrition
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5929 , http://hdl.handle.net/10962/d1017807
- Description: Benthic filter feeders have a key functional role in the dynamics of coastal food web as an intermediate trophic level and bioengineers. A wide variety of factors, operating across multiple spatial scales (e.g. hydrographic regime, human activities), can affect the composition of the water column and thus the availability of food for benthic populations. Food availability in turn affects the growth, reproductive rates and survival of benthic organisms, and consequently, can influence the functioning of the entire ecosystem. This study aims to evaluate how various environmental factors may modify the diet of intertidal filter feeders living along the South African coast. Specifically, the effects of biogeography, upwelling, urbanization and freshwater input on the dietary regimes of five species of filter feeders (two mussel and three barnacle species) were investigated using fatty acid (FA) and stable isotope (SI) analyses.Strong interspecific differences were found among the five species considered. However, all species responded to factors operating at large (100s km) and meso (10s- 100s km) scales (i.e. biogeography and upwelling respectively). The barnacles exhibit habitat segregation and showed different FA and SI signatures from each other, while the two mussel species, an invasive and native species that co-occur in the same mussel beds, had partially overlapping diets. Differences in their diets were found only using FA analysis, while their SI signatures differed on only one occasion. This highlights the importance of using the appropriate tool, and ideally combined techniques, to investigate diets.FA and SI signatures of all species considered changed among the three biographical provinces (west, south and east coasts of South Africa) exhibiting similar patterns that reflect the two oceanographic regimes that characterize the coastline: the eutrophic Benguela Current on the west coast and the oligotrophic Agulhas Current on the other two coasts. Upwelling had a significant effect on FA and SI signatures, with stronger effects on the west coast than the south coast. The results indicate that benthic filter feeders at upwelling areas consumed a mix of coastal macroalgal detritus and phytoplankton, which was probably brought onshore during downwelling events. At smaller spatialscales and using repeated sampling, the influence of upwelling on the west coast was found to be pervasive, rather than discrete, so that it may be more appropriate to categorize upwelling by referring to upwelling centres and downstream areas. SI underlined a significant effect of urbanization on the diet of filter feeders with an enrichment in the δ¹⁵N being characteristic of anthropogenic effect. Although a large number of rivers characterize the South African coast, no distinct effect of freshwater input was found for either the SI or FA signatures of the filter feeders. This contrasts with earlier work on demersal species and suggests that freshwater input does not significantly affect food availability for intertidal filter feeders, and that other factors (e.g. hydrogeography) are more important in determining the diet of these populations. These results highlight that environmental and anthropogenic factors operating at different spatial and temporal scales have a profound effect on benthic ecosystems, and that they control the relationship between primary production and primary consumers in coastal areas. Above all, this work highlights the importance of understanding the spatial and temporal scales at which different factors affect feeding regimes, and their critical role in coastal food webs.
- Full Text:
The influence of the physical environment, topography and time on the inshore distribution of invertebrate larvae : a multi-taxon approach
- Authors: Duna, Oliver Olwethu
- Date: 2015
- Subjects: Benthic animals -- Larvae , Benthic animals -- Ecology , Plankton -- Larvae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5926 , http://hdl.handle.net/10962/d1017804
- Description: Coastal hydrodynamics regulate population dynamics through the distribution and dispersal of the meroplankton of many benthic invertebrates. I examined the hydrodynamics at four different sites on the south-east coast of South Africa and coupled them with larval sampling done at high temporal and spatial resolution. Day and night sampling was done at all four sites and a continuous 24 hour study was done in one site, both forms of sampling were carried out in autumn and spring. Samples were taken at two stations, 900 metres offshore and 300 metres apart, within each site. Water properties measured were depth, temperature and current velocity and direction. Plankton samples were collected using a plankton pump at various depths, from the surface, bottom and either side of the thermocline when present. A wide range of taxa (mostly bryozoans, bivalves, barnacles and decapods) was examined. 2-way ANOVAs were used to test the effects of time and depth on each taxon. In addition, multiple regression analyses were performed on each taxon to investigate the effects of hydrodynamics on the distribution of larvae. Bryozoanlarvae proved to be positively phototactic whilst bivalve veligers, barnacle larvae and decapod zoeae performed diel vertical migration. Turbulence and temperature had an effect on the vertical distribution/migration of decapod zoeae. These results highlight the role of taxon-specific responses to flow and the potential differential effects on larval retention and ultimately connectivity of benthic populations.
- Full Text:
- Authors: Duna, Oliver Olwethu
- Date: 2015
- Subjects: Benthic animals -- Larvae , Benthic animals -- Ecology , Plankton -- Larvae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5926 , http://hdl.handle.net/10962/d1017804
- Description: Coastal hydrodynamics regulate population dynamics through the distribution and dispersal of the meroplankton of many benthic invertebrates. I examined the hydrodynamics at four different sites on the south-east coast of South Africa and coupled them with larval sampling done at high temporal and spatial resolution. Day and night sampling was done at all four sites and a continuous 24 hour study was done in one site, both forms of sampling were carried out in autumn and spring. Samples were taken at two stations, 900 metres offshore and 300 metres apart, within each site. Water properties measured were depth, temperature and current velocity and direction. Plankton samples were collected using a plankton pump at various depths, from the surface, bottom and either side of the thermocline when present. A wide range of taxa (mostly bryozoans, bivalves, barnacles and decapods) was examined. 2-way ANOVAs were used to test the effects of time and depth on each taxon. In addition, multiple regression analyses were performed on each taxon to investigate the effects of hydrodynamics on the distribution of larvae. Bryozoanlarvae proved to be positively phototactic whilst bivalve veligers, barnacle larvae and decapod zoeae performed diel vertical migration. Turbulence and temperature had an effect on the vertical distribution/migration of decapod zoeae. These results highlight the role of taxon-specific responses to flow and the potential differential effects on larval retention and ultimately connectivity of benthic populations.
- Full Text:
The trophic ecology of the endangered endemic Barau's Petrel (Pterodroma baraui) from Reunion Island, south-western Indian Ocean
- Authors: Danckwerts, Daniel Keith
- Date: 2015
- Subjects: Petrels -- Réunion , Pterodroma baraui , Ecology -- Réunion
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5925 , http://hdl.handle.net/10962/d1017803
- Description: Réunion is the only tropical island that supports two endemic gadfly petrels. Population modelling has indicated that the current threats to the Barau’s Petrel (Pterodroma baraui) may drive it to extinction; this fate is almost definite for the Mascarene Petrel (Pseudobulweria aterrima). Management interventions have therefore been implemented, but conservation potential is handicapped since virtually nothing is known about the former species’ at-sea biology. Thus, following numerous recommendations, this study aimed to combine stomach content, stable isotope, and fatty acid analyses so to provide new information on the at-sea ecology of Barau’s Petrel. Breeding colonies were repeatedly visited over the same season and samples gathered from adults, fledglings, and downy chicks. Stomach contents consisted mostly of accumulated cephalopod beaks whereas structures from fishes, molluscs, arthropods, and crustaceans were less frequently encountered. Fatty acid profiles of blood varied greatly among individuals and the lowincidences of monounsaturated and n-3 fatty acids discounted fish as an important dietary component. δ¹⁵N of blood indicated a niche between the fourth and fifth trophic levels, which proposes that these birds scavenge to a greater degree than other sympatric seabirds and suggests that adults are also reliant on their endogenous reserves during breeding. δ¹³C values confirmed the migratory behaviour of adults since birds returning from the non-breeding grounds were enriched relative to individuals sampled through the breeding period. Significant intra-breeding season variations in δ13C were also observed, which matched this species’ patterns of habitat use as have recently described. These results collectively indicate an opportunistic behaviour, which implies some degree of resilience against shifts in prey availability/accessibility, and suggest that this species’ reproduction isdependent on distant foraging areas. This breeding strategy is synonymous with great vulnerability as over-investing into a single breeding episode may jeopardize future survival and fecundity. Thus, in light of environmental conditions that are becoming increasingly more susceptible to dramatic changes, the birds could rather be prioritising adult survival, over reproductive output. Further work is obviously necessary and should benefit from databases of fatty acid profiles and isotope signatures of potential prey species.
- Full Text:
- Authors: Danckwerts, Daniel Keith
- Date: 2015
- Subjects: Petrels -- Réunion , Pterodroma baraui , Ecology -- Réunion
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5925 , http://hdl.handle.net/10962/d1017803
- Description: Réunion is the only tropical island that supports two endemic gadfly petrels. Population modelling has indicated that the current threats to the Barau’s Petrel (Pterodroma baraui) may drive it to extinction; this fate is almost definite for the Mascarene Petrel (Pseudobulweria aterrima). Management interventions have therefore been implemented, but conservation potential is handicapped since virtually nothing is known about the former species’ at-sea biology. Thus, following numerous recommendations, this study aimed to combine stomach content, stable isotope, and fatty acid analyses so to provide new information on the at-sea ecology of Barau’s Petrel. Breeding colonies were repeatedly visited over the same season and samples gathered from adults, fledglings, and downy chicks. Stomach contents consisted mostly of accumulated cephalopod beaks whereas structures from fishes, molluscs, arthropods, and crustaceans were less frequently encountered. Fatty acid profiles of blood varied greatly among individuals and the lowincidences of monounsaturated and n-3 fatty acids discounted fish as an important dietary component. δ¹⁵N of blood indicated a niche between the fourth and fifth trophic levels, which proposes that these birds scavenge to a greater degree than other sympatric seabirds and suggests that adults are also reliant on their endogenous reserves during breeding. δ¹³C values confirmed the migratory behaviour of adults since birds returning from the non-breeding grounds were enriched relative to individuals sampled through the breeding period. Significant intra-breeding season variations in δ13C were also observed, which matched this species’ patterns of habitat use as have recently described. These results collectively indicate an opportunistic behaviour, which implies some degree of resilience against shifts in prey availability/accessibility, and suggest that this species’ reproduction isdependent on distant foraging areas. This breeding strategy is synonymous with great vulnerability as over-investing into a single breeding episode may jeopardize future survival and fecundity. Thus, in light of environmental conditions that are becoming increasingly more susceptible to dramatic changes, the birds could rather be prioritising adult survival, over reproductive output. Further work is obviously necessary and should benefit from databases of fatty acid profiles and isotope signatures of potential prey species.
- Full Text:
What limits an invasive biotic and abiotic effects on the distribution of the invasive mussel mytilus galloprovincialis on the South African coastline
- Authors: Hall, Madison
- Date: 2015
- Subjects: Perna , Mytilus galloprovincialis , Mussels -- South Africa , Introduced organisms -- Environmental aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5927 , http://hdl.handle.net/10962/d1017805
- Full Text:
- Authors: Hall, Madison
- Date: 2015
- Subjects: Perna , Mytilus galloprovincialis , Mussels -- South Africa , Introduced organisms -- Environmental aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5927 , http://hdl.handle.net/10962/d1017805
- Full Text:
Fishing for resilience : herbivore and algal dynamics on coral reefs in Kenya.
- Authors: Humphries, Austin Turner
- Date: 2014
- Subjects: Coral reef conservation -- Kenya , Coral reef ecology -- Kenya , Coral reef biology -- Kenya , Coral reef fishes -- Kenya , Herbivores -- Kenya , Algae -- Control -- Kenya , Fishery management -- Kenya
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5877 , http://hdl.handle.net/10962/d1013147
- Description: Herbivory is a key process that mediates the abundance of primary producers and community composition in both terrestrial and aquatic ecosystems. On tropical coral reefs, changes in herbivory are often related to phase shifts between coral-dominance and dominance by seaweeds, or foliose macroalgae. Resilience or capacity to resist and reverse such phase shifts is, therefore, viewed as a critical function on coral reefs. This thesis used grazer exclusion and assay experiments at six sites within three different fisheries management regimes in Kenya to identify the impacts of herbivores (sea urchins and fishes) on algal dynamics in the context of coral reef resilience. First, I examined the grazing rates necessary to prevent phase shifts by quantifying consumption and algal production. Here, I found that, over a 390-day experiment, at least 50 percent of algal production must be consumed to avoid accumulation of algal biomass. Using video observations, I also showed that scraping parrotfishes remove more algae (per unit of fish biomass) than previously assumed, and that sea urchins, if released from predation, have similar impacts to fishes. Then I focused on algal succession, and found that sea urchins and fishes have different effects that are mediated by their abundances and species composition. Where sea urchins were less abundant and parrotfishes absent (e.g. young fisheries closures), progression of algae from turfs to early and then late successional macroalgae occurred rapidly and within 100 days. I then turned my focus to the removal of already established macroalgae (grown for > 1 yr in the absence of herbivores) and showed that sea urchins and browsing fishes were able to remove significant amounts of macroalgae where either herbivore was abundant. However, using multiple-choice selectivity assays and in situ video recordings, I found that browsing fishes fed very selectively with low overlap in diet among species, leading to low functional redundancy within a high diversity system. Finally, using long-term survey data (from 28 sites) to build a 43-year chronosequence, I showed that it is possible that the effects of herbivory will not be constant across transitions from open fishing to fishery closures through non-linear grazing intensity. Therefore, increases in herbivory within fisheries closures may not be immediate and may allow a window of opportunity for algae to go from turf to unpalatable macroalgae until scraping and browsing fishes fully recover from fishing (~ 20 years). The findings in this thesis are novel and raise concern over the potential implications of the slow recovery of parrotfishes or, given lower than expected functional redundancy in grazing effects, the absence of even one browsing fish species in fisheries closures. Overall, this thesis highlights the importance of herbivore community dynamics in mediating interactions among algae, and provides new insights for conservation and management actions that attempt to bolster the resilience of coral reefs.
- Full Text:
- Authors: Humphries, Austin Turner
- Date: 2014
- Subjects: Coral reef conservation -- Kenya , Coral reef ecology -- Kenya , Coral reef biology -- Kenya , Coral reef fishes -- Kenya , Herbivores -- Kenya , Algae -- Control -- Kenya , Fishery management -- Kenya
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5877 , http://hdl.handle.net/10962/d1013147
- Description: Herbivory is a key process that mediates the abundance of primary producers and community composition in both terrestrial and aquatic ecosystems. On tropical coral reefs, changes in herbivory are often related to phase shifts between coral-dominance and dominance by seaweeds, or foliose macroalgae. Resilience or capacity to resist and reverse such phase shifts is, therefore, viewed as a critical function on coral reefs. This thesis used grazer exclusion and assay experiments at six sites within three different fisheries management regimes in Kenya to identify the impacts of herbivores (sea urchins and fishes) on algal dynamics in the context of coral reef resilience. First, I examined the grazing rates necessary to prevent phase shifts by quantifying consumption and algal production. Here, I found that, over a 390-day experiment, at least 50 percent of algal production must be consumed to avoid accumulation of algal biomass. Using video observations, I also showed that scraping parrotfishes remove more algae (per unit of fish biomass) than previously assumed, and that sea urchins, if released from predation, have similar impacts to fishes. Then I focused on algal succession, and found that sea urchins and fishes have different effects that are mediated by their abundances and species composition. Where sea urchins were less abundant and parrotfishes absent (e.g. young fisheries closures), progression of algae from turfs to early and then late successional macroalgae occurred rapidly and within 100 days. I then turned my focus to the removal of already established macroalgae (grown for > 1 yr in the absence of herbivores) and showed that sea urchins and browsing fishes were able to remove significant amounts of macroalgae where either herbivore was abundant. However, using multiple-choice selectivity assays and in situ video recordings, I found that browsing fishes fed very selectively with low overlap in diet among species, leading to low functional redundancy within a high diversity system. Finally, using long-term survey data (from 28 sites) to build a 43-year chronosequence, I showed that it is possible that the effects of herbivory will not be constant across transitions from open fishing to fishery closures through non-linear grazing intensity. Therefore, increases in herbivory within fisheries closures may not be immediate and may allow a window of opportunity for algae to go from turf to unpalatable macroalgae until scraping and browsing fishes fully recover from fishing (~ 20 years). The findings in this thesis are novel and raise concern over the potential implications of the slow recovery of parrotfishes or, given lower than expected functional redundancy in grazing effects, the absence of even one browsing fish species in fisheries closures. Overall, this thesis highlights the importance of herbivore community dynamics in mediating interactions among algae, and provides new insights for conservation and management actions that attempt to bolster the resilience of coral reefs.
- Full Text:
Inter-individual variability and phenotypic plasticity : the effect of the environment on the biogeography, population structure, ecophysiology and reproduction of the sandhoppers Talorchestia capensis and Africorchestia quadrispinosa
- Authors: Baldanzi, Simone
- Date: 2014
- Subjects: Phenotypic plasticity -- Research -- Africa, Southern Talitridae -- Research -- Africa, Southern Amphipoda -- Research -- Africa, Southern Climatic changes -- Environmental aspects -- Africa, Southern Marine biology -- Africa, Southern Adaptation (Biology) -- Africa, Southern
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5846 , http://hdl.handle.net/10962/d1011447
- Description: Climatic envelope models focus on the climatic variables affecting species or species assemblages, and are important tools to investigate the effect of climate change on their geographical ranges. These models have largely been proposed in order to make successful predictions on species‘ persistence, determining which variables are likely to induce range expansion, contraction, or shifting. More recent models, including the ability and the cost for individuals to respond promptly to an environmental stimulus, have revealed that species may express phenotypic plasticity able to induce adaptation to the new environment. Consequently, understanding how species evolve to a changing climate is fundamental. From this perspective, investigating intraspecific responses to an environmental variable may contribute to better understanding and prediction of the effect of climate change on the geographical range and evolution of species, particularly in the case of widespread species. In this context, the present study aimed at establishing how environmental variables (focussing mainly on temperature) may have contributed to shape the spatial distribution, physiology, reproductive biology and connectivity of two species of Southern African sandhoppers (Talorchestia capensis and Africorchestia quadrispinosa, Amphipoda, Talitridae). Most of the work was carried out on T. capensis, due to its widespread spatial distribution. A first investigation of the biogeography of T. capensis and A. quadrispinosa, revealed that, for both species, spatial patterns of abundance, size and sex ratio were not explained by the Abundant Centre Hypothesis (greater abundance at the core of a spatial range), but rather guided by bio-physical forces. Precisely, the abundance of sandhoppers was driven by the morphodynamic state of the beach, salinity and temperatures, with strong differentiation among sites that reflected local environmental conditions. In support of these findings, strong population structure in the genetics of T. capensis was found (three main groups) when investigating its phylogeography and genetic connectivity. Although such defined structure may suggests cryptic speciation, the concomitant within-population variation in the COX1 region of mtDNA, also highlighted the importance of individual genetic variability. High individual variability was also found in the response of T. capensis to temperature, both in its physiology (thermal plasticity) and its reproductive biology (maternal effects). Since temperature is one of the main variables affecting the coastal marine systems of southern Africa and the metabolism of animals in general, its effect on the physiology and reproduction of T. capensis was therefore investigated. Thermal responses to increasing/decreasing temperatures were assessed for separated populations of T. capensis. Individual variability was reported in the oxygen consumption of T. capensis in response to temperature (high variation around the means, especially for increasing temperatures). Among population differences in thermal sensitivity were significantly correlated with air temperature variability experienced over the past 23 years, highlighting the importance of historical temperature fluctuations to the current thermal physiology of these sandhoppers. Temperature also had an important effect on the reproductive plasticity of T. capensis. Different temperatures induced mothers to adjust the size of their offspring (i.e. egg size), with larger eggs produced at lower temperatures. Interestingly, females showed strongly significant among individual variation in the size of the eggs. Given the importance of understanding rapid responses of organisms to climate change and considering the fundamental role played by phenotypic plasticity in evolution, the overall study revealed the significance of individual plasticity and variability in response to the environment and highlighted its importance. Particularly, studying the thermal physiology of separated populations and understanding within population reproductive plasticity in response to temperature, helped to clarify how differences among individual responses have important consequences at the population level, possibly explaining the widespread distribution of T. capensis.
- Full Text:
- Authors: Baldanzi, Simone
- Date: 2014
- Subjects: Phenotypic plasticity -- Research -- Africa, Southern Talitridae -- Research -- Africa, Southern Amphipoda -- Research -- Africa, Southern Climatic changes -- Environmental aspects -- Africa, Southern Marine biology -- Africa, Southern Adaptation (Biology) -- Africa, Southern
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5846 , http://hdl.handle.net/10962/d1011447
- Description: Climatic envelope models focus on the climatic variables affecting species or species assemblages, and are important tools to investigate the effect of climate change on their geographical ranges. These models have largely been proposed in order to make successful predictions on species‘ persistence, determining which variables are likely to induce range expansion, contraction, or shifting. More recent models, including the ability and the cost for individuals to respond promptly to an environmental stimulus, have revealed that species may express phenotypic plasticity able to induce adaptation to the new environment. Consequently, understanding how species evolve to a changing climate is fundamental. From this perspective, investigating intraspecific responses to an environmental variable may contribute to better understanding and prediction of the effect of climate change on the geographical range and evolution of species, particularly in the case of widespread species. In this context, the present study aimed at establishing how environmental variables (focussing mainly on temperature) may have contributed to shape the spatial distribution, physiology, reproductive biology and connectivity of two species of Southern African sandhoppers (Talorchestia capensis and Africorchestia quadrispinosa, Amphipoda, Talitridae). Most of the work was carried out on T. capensis, due to its widespread spatial distribution. A first investigation of the biogeography of T. capensis and A. quadrispinosa, revealed that, for both species, spatial patterns of abundance, size and sex ratio were not explained by the Abundant Centre Hypothesis (greater abundance at the core of a spatial range), but rather guided by bio-physical forces. Precisely, the abundance of sandhoppers was driven by the morphodynamic state of the beach, salinity and temperatures, with strong differentiation among sites that reflected local environmental conditions. In support of these findings, strong population structure in the genetics of T. capensis was found (three main groups) when investigating its phylogeography and genetic connectivity. Although such defined structure may suggests cryptic speciation, the concomitant within-population variation in the COX1 region of mtDNA, also highlighted the importance of individual genetic variability. High individual variability was also found in the response of T. capensis to temperature, both in its physiology (thermal plasticity) and its reproductive biology (maternal effects). Since temperature is one of the main variables affecting the coastal marine systems of southern Africa and the metabolism of animals in general, its effect on the physiology and reproduction of T. capensis was therefore investigated. Thermal responses to increasing/decreasing temperatures were assessed for separated populations of T. capensis. Individual variability was reported in the oxygen consumption of T. capensis in response to temperature (high variation around the means, especially for increasing temperatures). Among population differences in thermal sensitivity were significantly correlated with air temperature variability experienced over the past 23 years, highlighting the importance of historical temperature fluctuations to the current thermal physiology of these sandhoppers. Temperature also had an important effect on the reproductive plasticity of T. capensis. Different temperatures induced mothers to adjust the size of their offspring (i.e. egg size), with larger eggs produced at lower temperatures. Interestingly, females showed strongly significant among individual variation in the size of the eggs. Given the importance of understanding rapid responses of organisms to climate change and considering the fundamental role played by phenotypic plasticity in evolution, the overall study revealed the significance of individual plasticity and variability in response to the environment and highlighted its importance. Particularly, studying the thermal physiology of separated populations and understanding within population reproductive plasticity in response to temperature, helped to clarify how differences among individual responses have important consequences at the population level, possibly explaining the widespread distribution of T. capensis.
- Full Text:
Molecular phylogeny, phylogeography and evolutionary adaptation of foraging behaviour amongst sympatric patellid limpets along the southern African shoreline
- Authors: Mmonwa, Kolobe Lucas
- Date: 2014
- Subjects: Limpets -- South Africa -- Adaptation , Limpets -- South Africa -- Ecology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5882 , http://hdl.handle.net/10962/d1013222
- Description: The southern African shoreline is inhabited by a great diversity of patellid limpets of which most are endemic to South Africa. These limpets have evolved foraging mechanisms that partition ecological resources and reduce interspecific competition, resulting in ecological specialists and generalists. The evolution of ecological specialization or generalization remains poorly understood and there is no agreement on how such evolutionary transitions are correlated with levels of genetic diversity. This study investigated evolutionary correlations between territoriality in foraging and genetic structure of southern African patellid limpets (Cymbula and Scutellastra spp.) using stable δ13C and δ15N ratios, mitochondrial and nuclear DNA markers. The outcomes of the study were best rationalized and understood in the context of the scale of analysis in terms of both space and taxonomy. At biogeographic scales and the interspecific level, the stable isotope signatures and genetic structure of these limpets are determined by extrinsic factors such as biogeography and oceanography. However, at the smallest site scales and the intraspecific level, the isotope signatures and genetic diversity of these limpets are significantly correlated to their foraging traits. At large scales, there are no correlations between foraging behaviour and either genetic structure or isotope signature. At smaller scales, territorial Scutellastra foragers display both isotopic enrichment and greater haplotype diversity than congeneric non-territorial foragers. Thus, the isotope signatures and genetic structure of these limpets are determined by intrinsic species-specific response linked to their foraging behaviour. However, this pattern was intriguing as differences between territorial and non-territorial limpets in both isotopic signature and genetic diversity were observed only along the south coast when the same species were compared in other biogeographic regions. The significant interaction effect between foraging behaviour and stable isotope signatures was only observed from the sites within the Agulhas Bank or which are strongly influenced by the Agulhas current. This south enrichment in isotopic ratios is due to the mixing differences between onshore and offshore waters as the Agulhas current moves from east to south. At the generic level, the correlation between foraging behaviour and isotope signatures and genetic structure were particularly profound for Scutellastra species. The molecular phylogeny revealed deep evolutionary divergence between territorial and non-territorial Scutellastra spp. This divergence was concordant with morphological differences in shell shape and radula anatomy between territorial and non-territorial species. A taxonomic review of the scutellastrid spp. is proposed, suggesting possible re-consideration of the genus as two genera characterized by either territoriality or non-territoriality. The divergence between territorial and non-territorial species in both Scutellastra and Cymbula took place approximately in the early Oligocene. Major climatic cooling and decreases in sea level occurred during the Oligocene and this probably exposed much of the lower intertidal zone, increasing new potential habitats and algal availability. The Oligocene exposure of rocky shores and algal abundance in the lower intertidal zone probably elicited resource partitioning amongst these patellid limpets and subsequently, the evolution of territorial and non-territorial species. Analyses of the demographic history of these patellid limpets revealed evidence of post-glacial spatial expansion around the Pleistocene, implying these limpets were at population equilibrium during the dramatic LGM sea temperatures. Thus, these limpets managed to expand their range during dynamic oceanographic oscillations and dramatic sea-level changes in the Pleistocene. This study highlighted the importance of applying ecological traits as a subject to investigate and comprehend the evolutionary ecology of marine herbivores. The foraging traits of these true limpets are reflected in both their stable isotope ratios and genealogy, presumably as an evolutionary consequence of competition.
- Full Text:
- Authors: Mmonwa, Kolobe Lucas
- Date: 2014
- Subjects: Limpets -- South Africa -- Adaptation , Limpets -- South Africa -- Ecology
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5882 , http://hdl.handle.net/10962/d1013222
- Description: The southern African shoreline is inhabited by a great diversity of patellid limpets of which most are endemic to South Africa. These limpets have evolved foraging mechanisms that partition ecological resources and reduce interspecific competition, resulting in ecological specialists and generalists. The evolution of ecological specialization or generalization remains poorly understood and there is no agreement on how such evolutionary transitions are correlated with levels of genetic diversity. This study investigated evolutionary correlations between territoriality in foraging and genetic structure of southern African patellid limpets (Cymbula and Scutellastra spp.) using stable δ13C and δ15N ratios, mitochondrial and nuclear DNA markers. The outcomes of the study were best rationalized and understood in the context of the scale of analysis in terms of both space and taxonomy. At biogeographic scales and the interspecific level, the stable isotope signatures and genetic structure of these limpets are determined by extrinsic factors such as biogeography and oceanography. However, at the smallest site scales and the intraspecific level, the isotope signatures and genetic diversity of these limpets are significantly correlated to their foraging traits. At large scales, there are no correlations between foraging behaviour and either genetic structure or isotope signature. At smaller scales, territorial Scutellastra foragers display both isotopic enrichment and greater haplotype diversity than congeneric non-territorial foragers. Thus, the isotope signatures and genetic structure of these limpets are determined by intrinsic species-specific response linked to their foraging behaviour. However, this pattern was intriguing as differences between territorial and non-territorial limpets in both isotopic signature and genetic diversity were observed only along the south coast when the same species were compared in other biogeographic regions. The significant interaction effect between foraging behaviour and stable isotope signatures was only observed from the sites within the Agulhas Bank or which are strongly influenced by the Agulhas current. This south enrichment in isotopic ratios is due to the mixing differences between onshore and offshore waters as the Agulhas current moves from east to south. At the generic level, the correlation between foraging behaviour and isotope signatures and genetic structure were particularly profound for Scutellastra species. The molecular phylogeny revealed deep evolutionary divergence between territorial and non-territorial Scutellastra spp. This divergence was concordant with morphological differences in shell shape and radula anatomy between territorial and non-territorial species. A taxonomic review of the scutellastrid spp. is proposed, suggesting possible re-consideration of the genus as two genera characterized by either territoriality or non-territoriality. The divergence between territorial and non-territorial species in both Scutellastra and Cymbula took place approximately in the early Oligocene. Major climatic cooling and decreases in sea level occurred during the Oligocene and this probably exposed much of the lower intertidal zone, increasing new potential habitats and algal availability. The Oligocene exposure of rocky shores and algal abundance in the lower intertidal zone probably elicited resource partitioning amongst these patellid limpets and subsequently, the evolution of territorial and non-territorial species. Analyses of the demographic history of these patellid limpets revealed evidence of post-glacial spatial expansion around the Pleistocene, implying these limpets were at population equilibrium during the dramatic LGM sea temperatures. Thus, these limpets managed to expand their range during dynamic oceanographic oscillations and dramatic sea-level changes in the Pleistocene. This study highlighted the importance of applying ecological traits as a subject to investigate and comprehend the evolutionary ecology of marine herbivores. The foraging traits of these true limpets are reflected in both their stable isotope ratios and genealogy, presumably as an evolutionary consequence of competition.
- Full Text:
The epibiotic relationship between mussels and barnacles
- Authors: Bell, Caroline Margaret
- Date: 2014
- Subjects: Epibiosis , Mussels -- Ecology -- South Africa , Mussels -- Behavior -- South Africa , Mussels -- Habitat -- South Africa , Barnacles -- Ecology -- South Africa , Barnacles -- Behavior -- South Africa , Barnacles -- Habitat -- South Africa , Perna -- Behavior -- South Africa , Mytilus galloprovincialis -- Behavior -- South Africa , Marine biodiversity -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5847 , http://hdl.handle.net/10962/d1011460 , Epibiosis , Mussels -- Ecology -- South Africa , Mussels -- Behavior -- South Africa , Mussels -- Habitat -- South Africa , Barnacles -- Ecology -- South Africa , Barnacles -- Behavior -- South Africa , Barnacles -- Habitat -- South Africa , Perna -- Behavior -- South Africa , Mytilus galloprovincialis -- Behavior -- South Africa , Marine biodiversity -- South Africa
- Description: Epibiosis is an ecological relationship that has been described as one of the closest possible associations in marine ecosystems. In the space limited rocky intertidal, mussel beds provide important secondary space for barnacles. The epibiotic relationship between mussels and barnacles on the south-east coast of South Africa was considered at different scales, from large-scale, natural patterns of epibiosis on the rocky shore, to fine-scale settlement choices of barnacles and the effects on the condition and growth rates of individual mussels. Mussel and barnacle assemblages were generally stable over a 12-month period. The tracking of individual mussels with and without barnacle epibionts resulted in a significant increase in mortality rate of mussels with epibionts over 12 months (two-way ANOVA, p = 0.028). Barnacles on rocks, as well as on mussels, were also tracked with no significant effect of substratum on mortality of barnacles (two-way ANOVA, p = 0.119). Prevalence and intensity of barnacle infestations was also examined in relation to coastline topography on two co-occurring mussel species, the indigenous Perna perna and invasive Mytilus galloprovincialis. The results were complex, but bay status had significant effects on prevalence and intensity for both mussel species, depending on the time and zone. The effect of bay in relation to time was particularly relevant for M. galloprovincialis (four-way nested ANOVA, Season X Site(Bay): p = 0.0002), where summer prevalence was higher than that of winter in bays, regardless of zone, while in open coast sites, the effect of season was only significant in the mid zone. Patterns of intensity generally showed higher values in summer. Substratum preference by barnacles was investigated by recording settlement, survival and mortality of Chthamalus dentatus barnacles on various treatments. There was a strong preference for the rock-like plastic substratum by primary settlers (pair-wise tests of PERMANOVA: Dead < Rock mimic (p = 0.0001); Replica < Rock mimic (p = 0.019) and Live < Rock mimic (p = 0.0001)). This indicates that barnacles settle on mussel shells only as a secondary choice and that micro-topography is an important variable in barnacle settlement. The effect of barnacle epibiosis on condition index and growth of P. perna and M. galloprovincialis was also examined as a direct indication of the health of mussels subjected to the biological stress of epibiosis. Although not significant (PERMANOVA: P. perna: p(perm) = 0.890; M. galloprovincialis: p(perm) = 0.395), growth for both mussel species was slower for barnacle-infested individuals in summer, which is the main growing season for mussels in the region. Results from condition index calculations, however, showed no negative impacts of epibiotic barnacles (three-way ANCOVA: P. perna: p = 0.372; M. galloprovincialis: p = 0.762). Barnacle epibionts create a new interface between the mussel and its environment and this interaction can affect other members of the community. The possibility of the barnacle epibiont causing increased drag also needs further investigation. Biological processes operating within a wide range of physical stressors drive the interactions on the rocky shore, such as epibiosis. Overall, the results of this study suggest that the epibiotic relationship between mussels and barnacles on the south-east coast of South Africa does not significantly affect the mussel species present and that barnacles only use mussel shells as a secondary choice of substratum.
- Full Text:
- Authors: Bell, Caroline Margaret
- Date: 2014
- Subjects: Epibiosis , Mussels -- Ecology -- South Africa , Mussels -- Behavior -- South Africa , Mussels -- Habitat -- South Africa , Barnacles -- Ecology -- South Africa , Barnacles -- Behavior -- South Africa , Barnacles -- Habitat -- South Africa , Perna -- Behavior -- South Africa , Mytilus galloprovincialis -- Behavior -- South Africa , Marine biodiversity -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5847 , http://hdl.handle.net/10962/d1011460 , Epibiosis , Mussels -- Ecology -- South Africa , Mussels -- Behavior -- South Africa , Mussels -- Habitat -- South Africa , Barnacles -- Ecology -- South Africa , Barnacles -- Behavior -- South Africa , Barnacles -- Habitat -- South Africa , Perna -- Behavior -- South Africa , Mytilus galloprovincialis -- Behavior -- South Africa , Marine biodiversity -- South Africa
- Description: Epibiosis is an ecological relationship that has been described as one of the closest possible associations in marine ecosystems. In the space limited rocky intertidal, mussel beds provide important secondary space for barnacles. The epibiotic relationship between mussels and barnacles on the south-east coast of South Africa was considered at different scales, from large-scale, natural patterns of epibiosis on the rocky shore, to fine-scale settlement choices of barnacles and the effects on the condition and growth rates of individual mussels. Mussel and barnacle assemblages were generally stable over a 12-month period. The tracking of individual mussels with and without barnacle epibionts resulted in a significant increase in mortality rate of mussels with epibionts over 12 months (two-way ANOVA, p = 0.028). Barnacles on rocks, as well as on mussels, were also tracked with no significant effect of substratum on mortality of barnacles (two-way ANOVA, p = 0.119). Prevalence and intensity of barnacle infestations was also examined in relation to coastline topography on two co-occurring mussel species, the indigenous Perna perna and invasive Mytilus galloprovincialis. The results were complex, but bay status had significant effects on prevalence and intensity for both mussel species, depending on the time and zone. The effect of bay in relation to time was particularly relevant for M. galloprovincialis (four-way nested ANOVA, Season X Site(Bay): p = 0.0002), where summer prevalence was higher than that of winter in bays, regardless of zone, while in open coast sites, the effect of season was only significant in the mid zone. Patterns of intensity generally showed higher values in summer. Substratum preference by barnacles was investigated by recording settlement, survival and mortality of Chthamalus dentatus barnacles on various treatments. There was a strong preference for the rock-like plastic substratum by primary settlers (pair-wise tests of PERMANOVA: Dead < Rock mimic (p = 0.0001); Replica < Rock mimic (p = 0.019) and Live < Rock mimic (p = 0.0001)). This indicates that barnacles settle on mussel shells only as a secondary choice and that micro-topography is an important variable in barnacle settlement. The effect of barnacle epibiosis on condition index and growth of P. perna and M. galloprovincialis was also examined as a direct indication of the health of mussels subjected to the biological stress of epibiosis. Although not significant (PERMANOVA: P. perna: p(perm) = 0.890; M. galloprovincialis: p(perm) = 0.395), growth for both mussel species was slower for barnacle-infested individuals in summer, which is the main growing season for mussels in the region. Results from condition index calculations, however, showed no negative impacts of epibiotic barnacles (three-way ANCOVA: P. perna: p = 0.372; M. galloprovincialis: p = 0.762). Barnacle epibionts create a new interface between the mussel and its environment and this interaction can affect other members of the community. The possibility of the barnacle epibiont causing increased drag also needs further investigation. Biological processes operating within a wide range of physical stressors drive the interactions on the rocky shore, such as epibiosis. Overall, the results of this study suggest that the epibiotic relationship between mussels and barnacles on the south-east coast of South Africa does not significantly affect the mussel species present and that barnacles only use mussel shells as a secondary choice of substratum.
- Full Text: