Bluetooth audio and video streaming on the J2ME platform
- Authors: Sahd, Curtis Lee
- Date: 2011 , 2010-09-09
- Subjects: Bluetooth technology , Mobile communication systems , Communication -- Technological innovations , Communication -- Network analysis , Wireless communication systems , L2TP (Computer network protocol) , Computer network protocols , Streaming audio , Streaming video
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4633 , http://hdl.handle.net/10962/d1006521 , Bluetooth technology , Mobile communication systems , Communication -- Technological innovations , Communication -- Network analysis , Wireless communication systems , L2TP (Computer network protocol) , Computer network protocols , Streaming audio , Streaming video
- Description: With the increase in bandwidth, more widespread distribution of media, and increased capability of mobile devices, multimedia streaming has not only become feasible, but more economical in terms of space occupied by the media file and the costs involved in attaining it. Although much attention has been paid to peer to peer media streaming over the Internet using HTTP and RTSP, little research has focussed on the use of the Bluetooth protocol for streaming audio and video between mobile devices. This project investigates the feasibility of Bluetooth as a protocol for audio and video streaming between mobile phones using the J2ME platform, through the analysis of Bluetooth protocols, media formats, optimum packet sizes, and the effects of distance on transfer speed. A comparison was made between RFCOMM and L2CAP to determine which protocol could support the fastest transfer speed between two mobile devices. The L2CAP protocol proved to be the most suitable, providing average transfer rates of 136.17 KBps. Using this protocol a second experiment was undertaken to determine the most suitable media format for streaming in terms of: file size, bandwidth usage, quality, and ease of implementation. Out of the eight media formats investigated, the MP3 format provided the smallest file size, smallest bandwidth usage, best quality and highest ease of implementation. Another experiment was conducted to determine the optimum packet size for transfer between devices. A tradeoff was found between packet size and the quality of the sound file, with highest transfer rates being recorded with the MTU size of 668 bytes (136.58 KBps). The class of Bluetooth transmitter typically used in mobile devices (class 2) is considered a weak signal and is adversely affected by distance. As such, the final investigation that was undertaken was aimed at determining the effects of distance on audio streaming and playback. As can be expected, when devices were situated close to each other, the transfer speeds obtained were higher than when devices were far apart. Readings were taken at varying distances (1-15 metres), with erratic transfer speeds observed from 7 metres onwards. This research showed that audio streaming on the J2ME platform is feasible, however using the currently available class of Bluetooth transmitter, video streaming is not feasible. Video files were only playable once the entire media file had been transferred.
- Full Text:
- Date Issued: 2011
- Authors: Sahd, Curtis Lee
- Date: 2011 , 2010-09-09
- Subjects: Bluetooth technology , Mobile communication systems , Communication -- Technological innovations , Communication -- Network analysis , Wireless communication systems , L2TP (Computer network protocol) , Computer network protocols , Streaming audio , Streaming video
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4633 , http://hdl.handle.net/10962/d1006521 , Bluetooth technology , Mobile communication systems , Communication -- Technological innovations , Communication -- Network analysis , Wireless communication systems , L2TP (Computer network protocol) , Computer network protocols , Streaming audio , Streaming video
- Description: With the increase in bandwidth, more widespread distribution of media, and increased capability of mobile devices, multimedia streaming has not only become feasible, but more economical in terms of space occupied by the media file and the costs involved in attaining it. Although much attention has been paid to peer to peer media streaming over the Internet using HTTP and RTSP, little research has focussed on the use of the Bluetooth protocol for streaming audio and video between mobile devices. This project investigates the feasibility of Bluetooth as a protocol for audio and video streaming between mobile phones using the J2ME platform, through the analysis of Bluetooth protocols, media formats, optimum packet sizes, and the effects of distance on transfer speed. A comparison was made between RFCOMM and L2CAP to determine which protocol could support the fastest transfer speed between two mobile devices. The L2CAP protocol proved to be the most suitable, providing average transfer rates of 136.17 KBps. Using this protocol a second experiment was undertaken to determine the most suitable media format for streaming in terms of: file size, bandwidth usage, quality, and ease of implementation. Out of the eight media formats investigated, the MP3 format provided the smallest file size, smallest bandwidth usage, best quality and highest ease of implementation. Another experiment was conducted to determine the optimum packet size for transfer between devices. A tradeoff was found between packet size and the quality of the sound file, with highest transfer rates being recorded with the MTU size of 668 bytes (136.58 KBps). The class of Bluetooth transmitter typically used in mobile devices (class 2) is considered a weak signal and is adversely affected by distance. As such, the final investigation that was undertaken was aimed at determining the effects of distance on audio streaming and playback. As can be expected, when devices were situated close to each other, the transfer speeds obtained were higher than when devices were far apart. Readings were taken at varying distances (1-15 metres), with erratic transfer speeds observed from 7 metres onwards. This research showed that audio streaming on the J2ME platform is feasible, however using the currently available class of Bluetooth transmitter, video streaming is not feasible. Video files were only playable once the entire media file had been transferred.
- Full Text:
- Date Issued: 2011
Characterization of stratified L-topological spaces by convergence of stratified L-filters
- Authors: Orpen, David Lisle
- Date: 2011
- Subjects: Topology , Generalized spaces , Filters (Mathematics) , Topological spaces
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5402 , http://hdl.handle.net/10962/d1005216 , Topology , Generalized spaces , Filters (Mathematics) , Topological spaces
- Description: For the case where L is an ecl-premonoid, we explore various characterizations of SL-topological spaces, in particular characterization in terms of a convergence function lim: FS L(X) ! LX. We find we have to introduce a new axiom , L on the lim function in order to completely describe SL-topological spaces, which is not required in the case where L is a frame. We generalize the classical Kowalski and Fischer axioms to the lattice context and examine their relationship to the convergence axioms. We define the category of stratified L-generalized convergence spaces, as a generalization of the classical convergence spaces and investigate conditions under which it contains the category of stratified L-topological spaces as a reflective subcategory. We investigate some subcategories of the category of stratified L-generalized convergence spaces obtained by generalizing various classical convergence axioms.
- Full Text:
- Date Issued: 2011
- Authors: Orpen, David Lisle
- Date: 2011
- Subjects: Topology , Generalized spaces , Filters (Mathematics) , Topological spaces
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5402 , http://hdl.handle.net/10962/d1005216 , Topology , Generalized spaces , Filters (Mathematics) , Topological spaces
- Description: For the case where L is an ecl-premonoid, we explore various characterizations of SL-topological spaces, in particular characterization in terms of a convergence function lim: FS L(X) ! LX. We find we have to introduce a new axiom , L on the lim function in order to completely describe SL-topological spaces, which is not required in the case where L is a frame. We generalize the classical Kowalski and Fischer axioms to the lattice context and examine their relationship to the convergence axioms. We define the category of stratified L-generalized convergence spaces, as a generalization of the classical convergence spaces and investigate conditions under which it contains the category of stratified L-topological spaces as a reflective subcategory. We investigate some subcategories of the category of stratified L-generalized convergence spaces obtained by generalizing various classical convergence axioms.
- Full Text:
- Date Issued: 2011
Co-utilisation of microalgae for wastewater treatment and the production of animal feed supplements
- Authors: Johnson, Hailey E
- Date: 2011
- Subjects: Microalgae -- Biotechnology , Algae culture , Algae products , Waste products as feed , Sewage -- Purification , Organic wastes -- Recycling , Food industry and trade -- Waste disposal , Agriculture -- Waste disposal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3940 , http://hdl.handle.net/10962/d1003999 , Microalgae -- Biotechnology , Algae culture , Algae products , Waste products as feed , Sewage -- Purification , Organic wastes -- Recycling , Food industry and trade -- Waste disposal , Agriculture -- Waste disposal
- Description: Microalgae have a variety of commercial applications, the oldest of which include utilisation as a food source and for use in wastewater treatment. These applications, however, are seldom combined due to toxicity concerns, for ethical reasons, and generally the requirement for cultivation of a single algae species for use as a feed supplement. These problems might be negated if a “safer” wastewater such as that from agricultural and/or commercial food production facilities were to be utilised and if a stable algae population can be maintained. In this investigation preliminary studies were carried out using an Integrated Algae Pond System (IAPS) for domestic wastewater treatment to determine the species composition in the associated High Rate Algae Ponds (HRAPs). The effect of different modes of operation, continuous versus batch, on nutrient removal, productivity and species composition was also investigated. Furthermore, indigenous species in the HRAP were isolated and molecularly identified as, Chlorella, Micractinium, Scenedesmus and Pediastrum. Additionally, the effect of the nor amino acid, 2-hydroxy-4-(methylthio)-butanoic acid (HMTBA) and its Cu-chelated derivative, on the growth and biochemical composition of Chlorella, Micractinium, Scenedesmus, Pediastrum and Spirulina was investigated. Species composition in the HRAP was stable under continuous operation with Micractinium dominating > 90% of the algae population. Under batch operation the population dynamic shifted; Chlorella outcompeted Micractinium possibly due to nutrient depletion and selective grazing pressures caused by proliferation of Daphnia. Higher species diversity was observed during batch mode as slower growing algae were able to establish in the HRAP. Nutrient removal efficiency and biomass productivity was higher in continuous mode, however lower nutrient levels were obtained in batch operation. HMTBA did not significantly affect growth rate, however treatment with 10 mg.L-1 resulted in slightly increased growth rate in Micractinium and increased final biomass concentrations in Chlorella, Micractinium and Spirulina (although this was not statistically significant for Micractinium and Spirulina), which are known mixotrophic species. Algae treated with Cu-HMTBA, showed reduced final biomass concentration with 10 mg.L-1, caused by Cu toxicity. Biochemical composition of the algae was species-specific and differed through the growth cycle, with high protein observed during early growth and high carbohydrate during late growth/early stationary phase. Additionally, 0.1 mg.L-1 HMTBA and Cu-HMTBA significantly reduced protein content in Chlorella, Micractinium, Scenedesmus and Pediastrum. In conclusion, operation of the HRAP in continuous culture provided suitable wastewater treatment with high productivity of an ideal species, Micractinium, for use in animal feed supplementation. This species had 40% protein content during growth (higher than the other species tested) and dominated the HRAP at > 90% of the algae population during continuous mode. Addition of HMTBA (> 1 mg.L-1) to algae cultivation systems and those treating wastewater, has the potential to improve productivity and the value of the biomass by enhancing protein content. Overall, the co-utilisation of microalgae for wastewater treatment and the generation of a biomass rich in protein, for incorporation into formulated animal feed supplements, represents a closed ecosystem which conserves nutrients and regenerates a most valuable resource, water.
- Full Text:
- Date Issued: 2011
- Authors: Johnson, Hailey E
- Date: 2011
- Subjects: Microalgae -- Biotechnology , Algae culture , Algae products , Waste products as feed , Sewage -- Purification , Organic wastes -- Recycling , Food industry and trade -- Waste disposal , Agriculture -- Waste disposal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3940 , http://hdl.handle.net/10962/d1003999 , Microalgae -- Biotechnology , Algae culture , Algae products , Waste products as feed , Sewage -- Purification , Organic wastes -- Recycling , Food industry and trade -- Waste disposal , Agriculture -- Waste disposal
- Description: Microalgae have a variety of commercial applications, the oldest of which include utilisation as a food source and for use in wastewater treatment. These applications, however, are seldom combined due to toxicity concerns, for ethical reasons, and generally the requirement for cultivation of a single algae species for use as a feed supplement. These problems might be negated if a “safer” wastewater such as that from agricultural and/or commercial food production facilities were to be utilised and if a stable algae population can be maintained. In this investigation preliminary studies were carried out using an Integrated Algae Pond System (IAPS) for domestic wastewater treatment to determine the species composition in the associated High Rate Algae Ponds (HRAPs). The effect of different modes of operation, continuous versus batch, on nutrient removal, productivity and species composition was also investigated. Furthermore, indigenous species in the HRAP were isolated and molecularly identified as, Chlorella, Micractinium, Scenedesmus and Pediastrum. Additionally, the effect of the nor amino acid, 2-hydroxy-4-(methylthio)-butanoic acid (HMTBA) and its Cu-chelated derivative, on the growth and biochemical composition of Chlorella, Micractinium, Scenedesmus, Pediastrum and Spirulina was investigated. Species composition in the HRAP was stable under continuous operation with Micractinium dominating > 90% of the algae population. Under batch operation the population dynamic shifted; Chlorella outcompeted Micractinium possibly due to nutrient depletion and selective grazing pressures caused by proliferation of Daphnia. Higher species diversity was observed during batch mode as slower growing algae were able to establish in the HRAP. Nutrient removal efficiency and biomass productivity was higher in continuous mode, however lower nutrient levels were obtained in batch operation. HMTBA did not significantly affect growth rate, however treatment with 10 mg.L-1 resulted in slightly increased growth rate in Micractinium and increased final biomass concentrations in Chlorella, Micractinium and Spirulina (although this was not statistically significant for Micractinium and Spirulina), which are known mixotrophic species. Algae treated with Cu-HMTBA, showed reduced final biomass concentration with 10 mg.L-1, caused by Cu toxicity. Biochemical composition of the algae was species-specific and differed through the growth cycle, with high protein observed during early growth and high carbohydrate during late growth/early stationary phase. Additionally, 0.1 mg.L-1 HMTBA and Cu-HMTBA significantly reduced protein content in Chlorella, Micractinium, Scenedesmus and Pediastrum. In conclusion, operation of the HRAP in continuous culture provided suitable wastewater treatment with high productivity of an ideal species, Micractinium, for use in animal feed supplementation. This species had 40% protein content during growth (higher than the other species tested) and dominated the HRAP at > 90% of the algae population during continuous mode. Addition of HMTBA (> 1 mg.L-1) to algae cultivation systems and those treating wastewater, has the potential to improve productivity and the value of the biomass by enhancing protein content. Overall, the co-utilisation of microalgae for wastewater treatment and the generation of a biomass rich in protein, for incorporation into formulated animal feed supplements, represents a closed ecosystem which conserves nutrients and regenerates a most valuable resource, water.
- Full Text:
- Date Issued: 2011
Constructability effects of green buildings
- Authors: Hurbissoon, Roneesh Mehta
- Date: 2011
- Subjects: Sustainable construction , Architecture and energy conservation , Construction industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9722 , http://hdl.handle.net/10948/1379 , Sustainable construction , Architecture and energy conservation , Construction industry
- Description: The Earth's health is deteriorating and will deteriorate even more rapidly unless people adopt eco-friendly policies. Green building has long been a concept but it has not yet been universally applied in practice. The concept of sustainability emerged in the 1970s and can be associated with the energy crisis and environmental pollution concerns. This research is aimed at investigating whether building “green” is more demanding than non-green buildings in terms of cost and the use of green materials against traditional materials; whether professionals in the construction industry are knowledgeable in terms of green buildings; and lastly, to determine whether green buildings are contributing significantly to the environment. The literature reviewed and results of quantitative research amongst professionals from the Island of Mauritius formed the basis of the study. The study revealed that green building is expensive relative to traditional buildings considering. However, the concepts employed (for example: lower energy use, less waste disposal, lower water usage, and sustainable design) provide green buildings with long term savings. Furthermore, the scarcity of natural materials makes it expensive. The study also showed that contractors and professionals have a preference for traditional materials over green materials thus making them more familiar with traditional materials. Contractors and professionals are believed to understand green materials only on a limited basis. This may be attributed to the specific environmental issues involved; however, the research revealed that the professionals are familiar with the basic concepts of green buildings. Lastly, the research showed that green building is still at its infancy but the benefits of green buildings are understood; resulting in green buildings having a good growth potential. The study should be valuable to construction industry professional and clients.
- Full Text:
- Date Issued: 2011
- Authors: Hurbissoon, Roneesh Mehta
- Date: 2011
- Subjects: Sustainable construction , Architecture and energy conservation , Construction industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9722 , http://hdl.handle.net/10948/1379 , Sustainable construction , Architecture and energy conservation , Construction industry
- Description: The Earth's health is deteriorating and will deteriorate even more rapidly unless people adopt eco-friendly policies. Green building has long been a concept but it has not yet been universally applied in practice. The concept of sustainability emerged in the 1970s and can be associated with the energy crisis and environmental pollution concerns. This research is aimed at investigating whether building “green” is more demanding than non-green buildings in terms of cost and the use of green materials against traditional materials; whether professionals in the construction industry are knowledgeable in terms of green buildings; and lastly, to determine whether green buildings are contributing significantly to the environment. The literature reviewed and results of quantitative research amongst professionals from the Island of Mauritius formed the basis of the study. The study revealed that green building is expensive relative to traditional buildings considering. However, the concepts employed (for example: lower energy use, less waste disposal, lower water usage, and sustainable design) provide green buildings with long term savings. Furthermore, the scarcity of natural materials makes it expensive. The study also showed that contractors and professionals have a preference for traditional materials over green materials thus making them more familiar with traditional materials. Contractors and professionals are believed to understand green materials only on a limited basis. This may be attributed to the specific environmental issues involved; however, the research revealed that the professionals are familiar with the basic concepts of green buildings. Lastly, the research showed that green building is still at its infancy but the benefits of green buildings are understood; resulting in green buildings having a good growth potential. The study should be valuable to construction industry professional and clients.
- Full Text:
- Date Issued: 2011
Development of techniques for the isolation of a granulovirus from potato tuber moth, phthorimaea operculella (Zeller)
- Authors: King, Shirley Anne
- Date: 2011
- Subjects: Potato tuberworm -- Larvae , Agricultural pests -- Biological control , Potato tuberworm , Baculoviruses
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5910 , http://hdl.handle.net/10962/d1015202
- Description: Phthorimaea operculella, commonly known as the Potato Tuber Moth, is an economically important agricultural pest worldwide. The baculovirus, Phthorimaea operculella granulovirus (PhoGV) has been considered as a means of control alternative to chemical control because of its host specificity and harmless impact on other organisms and ecosystems. An isolate of PhoGV obtained from a South African PTM population would be beneficial in the production of a biopesticide, which is not yet available. An efficient and cost-effective rearing method would be advantageous for potential commercial production. Commercial table and seed potato plantations and storage facilities located in Patensie, Bathurst, Howick and Ivanhoe were surveyed for PTM infestations. Patensie was the only site where milky discoloured larvae were found, a potential symptom of PhoGV infection. TEM analysis revealed no virus in these samples. Since no virus was found in the field-collected samples, PTM insects were collected to initiate rearing in the laboratory. PTM was raised by three different methods in the laboratory. A cost/benefit analysis, survival rate, fertility and sex ratio were recorded for each rearing method. Rearing method one was deemed unsuccessful for efficient commercial rearing, as survival percentage and fertility were low. Rearing methods two and three had high survival rates and high fertility, and were efficient and less labour intensive than rearing method one. Rearing method three was the most productive technique, but for commercial production rearing method two was considered the most manageable and efficient. The sex ratio was 1:1 for all three cultures. The cost analysis revealed that rearing methods two and three were less expensive than rearing method one because less labour was required to monitor insects. The success of rearing PTM for 19 months will enable these cultures to be up-scaled to a large production facility for mass rearing. Virus was not found in the field surveys or in laboratory cultures, therefore chemical, temperature, humidity and carbon dioxide stressors were used in an attempt to initiate a baculoviral infection. Symptoms were exhibited in larvae subjected to chemical, temperature and humidity treatments, but these were confirmed by TEM analysis not to be a result of PhoGV infection. The success of rearing PTM in the laboratory suggests that the method could be used in the commercial rearing of the insects in a large mass-rearing facility. The data obtained from induction protocols have allowed for better understanding for future induction for PhoGV and other baculoviruses in other insect species. The failure to isolate a South African PhoGV strain for developing a biopesticide against PTM has motivated further studies in obtaining a baculovirus in order for South Africa to develop a commercial product against this pest.
- Full Text:
- Date Issued: 2011
- Authors: King, Shirley Anne
- Date: 2011
- Subjects: Potato tuberworm -- Larvae , Agricultural pests -- Biological control , Potato tuberworm , Baculoviruses
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5910 , http://hdl.handle.net/10962/d1015202
- Description: Phthorimaea operculella, commonly known as the Potato Tuber Moth, is an economically important agricultural pest worldwide. The baculovirus, Phthorimaea operculella granulovirus (PhoGV) has been considered as a means of control alternative to chemical control because of its host specificity and harmless impact on other organisms and ecosystems. An isolate of PhoGV obtained from a South African PTM population would be beneficial in the production of a biopesticide, which is not yet available. An efficient and cost-effective rearing method would be advantageous for potential commercial production. Commercial table and seed potato plantations and storage facilities located in Patensie, Bathurst, Howick and Ivanhoe were surveyed for PTM infestations. Patensie was the only site where milky discoloured larvae were found, a potential symptom of PhoGV infection. TEM analysis revealed no virus in these samples. Since no virus was found in the field-collected samples, PTM insects were collected to initiate rearing in the laboratory. PTM was raised by three different methods in the laboratory. A cost/benefit analysis, survival rate, fertility and sex ratio were recorded for each rearing method. Rearing method one was deemed unsuccessful for efficient commercial rearing, as survival percentage and fertility were low. Rearing methods two and three had high survival rates and high fertility, and were efficient and less labour intensive than rearing method one. Rearing method three was the most productive technique, but for commercial production rearing method two was considered the most manageable and efficient. The sex ratio was 1:1 for all three cultures. The cost analysis revealed that rearing methods two and three were less expensive than rearing method one because less labour was required to monitor insects. The success of rearing PTM for 19 months will enable these cultures to be up-scaled to a large production facility for mass rearing. Virus was not found in the field surveys or in laboratory cultures, therefore chemical, temperature, humidity and carbon dioxide stressors were used in an attempt to initiate a baculoviral infection. Symptoms were exhibited in larvae subjected to chemical, temperature and humidity treatments, but these were confirmed by TEM analysis not to be a result of PhoGV infection. The success of rearing PTM in the laboratory suggests that the method could be used in the commercial rearing of the insects in a large mass-rearing facility. The data obtained from induction protocols have allowed for better understanding for future induction for PhoGV and other baculoviruses in other insect species. The failure to isolate a South African PhoGV strain for developing a biopesticide against PTM has motivated further studies in obtaining a baculovirus in order for South Africa to develop a commercial product against this pest.
- Full Text:
- Date Issued: 2011
Development, manufacture and assessment of Clobetasol 17-propionate cream formulations
- Fauzee, Ayeshah Fateemah Beebee
- Authors: Fauzee, Ayeshah Fateemah Beebee
- Date: 2011
- Subjects: Adrenocortical hormones , Adrenocortical hormones -- Physiological effect , Adrenocortical hormones -- Testing , Drugs -- Testing , Drugs -- Development , Dermatopharmacology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3856 , http://hdl.handle.net/10962/d1013324
- Description: Eczema or dermatitis is the most common dermatological condition accounting for one-third of all diagnoses in the total population surveyed in South Africa. The prevalence of seborrhoeic dermatitis, extreme photodermatitis and severe psoriasis has increased markedly over the last decade and this increase may be ascribed to the HIV epidemic, first diagnosed in South Africa in 1982. Potent innovator corticosteroids, such as clobetasol 17-propionate (CP) that are used to treat skin disorders, are expensive and there is therefore a need for the production of generic topical corticosteroid products. Formulation and manufacturing processes can be challenging aspects for formulation scientists to produce a robust product that will elicit an appropriate and desirable pharmacokinetic-pharmacodynamic profile. Laboratory scale CP creams were manufactured using different concentrations of Gelot® 64 and propylene glycol in order to establish a composition that would produce a formulation, with similar physical and chemical characteristics and in vitro release profile as an innovator product, Dermovate®. These formulations were assessed in terms of their viscosity, spreadability, pH, content uniformity and in vitro release characteristics using a Franz diffusion cell apparatus. A formulation containing 3% w/w Gelot® 64 and 46% v/v propylene glycol (CPLS-02) was found to exhibit similar viscosity and spreadability characteristics and released CP in a manner similar to Dermovate®. The mechanism of drug release was evaluated using mathematical models such as zero order, first order and Higuchi models. In addition, the in vitro release profiles were characterised by use of difference (f1) and similarity (f2 and Sd) factors. A scale-up formulation with the same % w/w composition as the laboratory scale was also investigated following manufacture using a Wintech® cream/ointment mixer. A Central Composite Design approach was used to investigate the effect of process variables on the performance of the scale-up cream formulations. The homogenisation speed, anchor speed, homogenisation time and cooling time were the process variables investigated. Thirty scale-up batches were manufactured and analysed in terms of their viscosity, spreadability, pH, % drug content and cumulative % drug released per unit area over 72 hours. Model fitting using Design-Expert® software was undertaken and revealed that a correlation between the process variables and the cream responses was most suitably described by quadratic polynomial relationships. The homogenisation speed had the most significant effect on the quality of the scale-up formulations, whereas the anchor speed had a secondary effect on the measured responses, for the formulations investigated. The qualitative interpretation and statistical analysis of the in vitro release data from the scale-up formulations using ANOVA and the f1, f2 and Sd factors revealed that one scale-up batch (CPSU-04), for which the process variables were a homogenisation speed of 1900 rpm, an anchor speed of 35 rpm, a homogenisation time of 100 minutes and a cooling time of 100 minutes, released CP at a similar rate and extent to Dermovate®. A diffusion-controlled mechanism appeared to be predominant in these formulations. A human skin blanching study, using both visual and chromameter assessments, was performed to establish whether batch CPSU-04 was bioequivalent to Dermovate®. The bioequivalence of the selected scale-up formulation to Dermovate® was confirmed, following the calculation of a 90% CI.
- Full Text:
- Date Issued: 2011
- Authors: Fauzee, Ayeshah Fateemah Beebee
- Date: 2011
- Subjects: Adrenocortical hormones , Adrenocortical hormones -- Physiological effect , Adrenocortical hormones -- Testing , Drugs -- Testing , Drugs -- Development , Dermatopharmacology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3856 , http://hdl.handle.net/10962/d1013324
- Description: Eczema or dermatitis is the most common dermatological condition accounting for one-third of all diagnoses in the total population surveyed in South Africa. The prevalence of seborrhoeic dermatitis, extreme photodermatitis and severe psoriasis has increased markedly over the last decade and this increase may be ascribed to the HIV epidemic, first diagnosed in South Africa in 1982. Potent innovator corticosteroids, such as clobetasol 17-propionate (CP) that are used to treat skin disorders, are expensive and there is therefore a need for the production of generic topical corticosteroid products. Formulation and manufacturing processes can be challenging aspects for formulation scientists to produce a robust product that will elicit an appropriate and desirable pharmacokinetic-pharmacodynamic profile. Laboratory scale CP creams were manufactured using different concentrations of Gelot® 64 and propylene glycol in order to establish a composition that would produce a formulation, with similar physical and chemical characteristics and in vitro release profile as an innovator product, Dermovate®. These formulations were assessed in terms of their viscosity, spreadability, pH, content uniformity and in vitro release characteristics using a Franz diffusion cell apparatus. A formulation containing 3% w/w Gelot® 64 and 46% v/v propylene glycol (CPLS-02) was found to exhibit similar viscosity and spreadability characteristics and released CP in a manner similar to Dermovate®. The mechanism of drug release was evaluated using mathematical models such as zero order, first order and Higuchi models. In addition, the in vitro release profiles were characterised by use of difference (f1) and similarity (f2 and Sd) factors. A scale-up formulation with the same % w/w composition as the laboratory scale was also investigated following manufacture using a Wintech® cream/ointment mixer. A Central Composite Design approach was used to investigate the effect of process variables on the performance of the scale-up cream formulations. The homogenisation speed, anchor speed, homogenisation time and cooling time were the process variables investigated. Thirty scale-up batches were manufactured and analysed in terms of their viscosity, spreadability, pH, % drug content and cumulative % drug released per unit area over 72 hours. Model fitting using Design-Expert® software was undertaken and revealed that a correlation between the process variables and the cream responses was most suitably described by quadratic polynomial relationships. The homogenisation speed had the most significant effect on the quality of the scale-up formulations, whereas the anchor speed had a secondary effect on the measured responses, for the formulations investigated. The qualitative interpretation and statistical analysis of the in vitro release data from the scale-up formulations using ANOVA and the f1, f2 and Sd factors revealed that one scale-up batch (CPSU-04), for which the process variables were a homogenisation speed of 1900 rpm, an anchor speed of 35 rpm, a homogenisation time of 100 minutes and a cooling time of 100 minutes, released CP at a similar rate and extent to Dermovate®. A diffusion-controlled mechanism appeared to be predominant in these formulations. A human skin blanching study, using both visual and chromameter assessments, was performed to establish whether batch CPSU-04 was bioequivalent to Dermovate®. The bioequivalence of the selected scale-up formulation to Dermovate® was confirmed, following the calculation of a 90% CI.
- Full Text:
- Date Issued: 2011
Effects of colours, shapes and icons on performance and familiarity
- Authors: Dambuza, Inga Yola
- Date: 2011
- Subjects: Industrial hygiene -- Research -- South Africa , Industrial safety -- Research -- South Africa , Industrial hygiene -- Standards -- South Africa , Human engineering -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5117 , http://hdl.handle.net/10962/d1005195 , Industrial hygiene -- Research -- South Africa , Industrial safety -- Research -- South Africa , Industrial hygiene -- Standards -- South Africa , Human engineering -- Research -- South Africa
- Description: Occupational injuries and illnesses remain to be a heavy burden on workers and employees in industrial developing and industrially developed societies, and health and safety in workplaces continues to be an important issue for ergonomists. Steps are being taken to stimulate health and safety agendas and to discover ways in which health and safety in industries can be improved. The main responsibility of employers is to provide employees with information, instructions and training that they required to carry out their work tasks in a healthy, practical and safe manner. The role of education as a countermeasure to occupational injury and illness is being re-examined by health and safety practitioners and safety training is being considered as a vital part of accident prevention strategies. Effective training programmes should guarantee that workers possess the skills they require to complete their tasks in a safe and healthy manner. Very little is known about the type and quality of training workers undergo and how that training affects the safety outcomes of companies. There has been an attempt over the past 20 years to increase the research on safety communications and a great deal of this research has been focused on safety warnings; with the greatest attention been placed on the components of safety signs, such as colours, size, shapes and icons. The effects of these components on comprehension with relation to age and education have not received the same amount of attention. The impact of familiarity on safety warnings with respect to age and education has also received very little attention; despite the knowledge that familiarity has been shown to increase the noticing of warnings and the comprehension of safety information. Despite the increase in the research on safety communication, the literature and research in South Africa is scarce. Studies present in South Africa do not encompass the comprehension of safety signs or the ability of individuals with different age and education levels to learn the information included in the signs. Due to the multi-linguistic nature of South Africa and the fact that South Africa is an Industrially Developing Country (IDC) with high levels of illiteracy, issues such as the comprehension of safety information must be addressed. Therefore, the objectives of this study were to investigate the effects of safety sign attributes on learning and familiarity, in subjects that differed in age and education levels. These effects were investigated through measuring the reaction and response times of the different subject groups, as well as the number of components in the safety signs that were recalled correctly. The combined results of these responses were used as a measure for familiarity. A set of signs was designed for the study by the researcher using three different colours, three different shapes, three different icons and text. Certain variables were omitted from some signs to create the test pool and the eight conditions that were tested in a laboratory setting. Each condition contained different components of the designed signs and 60 subjects were used to test these conditions. The subjects were placed in groups according to their age and level of education. Subjects were required to learn a set of 64 signs, either “With Occlusion” or “Without Occlusion”, and asked to recall the meanings of the components in the signs. Reaction time, response time and error rate were measured from the responses. The results showed that the conditions resulted in different reaction times, response times and error rates for all subjects. The signs containing a combination of shapes and text resulted in the best performance. Age and education were found to have a significant effect on various performance criteria as did the method in which the signs were displayed (Occlusion and No Occlusion). The increased repetitions and sessions elicited lower reaction times, response times and error rates. The conclusions drawn from this study suggest that different attributes be considered carefully when subjects are expected to learn and recall information in safety signs. The results also highlighted the need to increase the exposure of individuals to safety signs in order to increase familiarity and ultimately improve the recall and comprehension of the attributes.
- Full Text:
- Date Issued: 2011
- Authors: Dambuza, Inga Yola
- Date: 2011
- Subjects: Industrial hygiene -- Research -- South Africa , Industrial safety -- Research -- South Africa , Industrial hygiene -- Standards -- South Africa , Human engineering -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5117 , http://hdl.handle.net/10962/d1005195 , Industrial hygiene -- Research -- South Africa , Industrial safety -- Research -- South Africa , Industrial hygiene -- Standards -- South Africa , Human engineering -- Research -- South Africa
- Description: Occupational injuries and illnesses remain to be a heavy burden on workers and employees in industrial developing and industrially developed societies, and health and safety in workplaces continues to be an important issue for ergonomists. Steps are being taken to stimulate health and safety agendas and to discover ways in which health and safety in industries can be improved. The main responsibility of employers is to provide employees with information, instructions and training that they required to carry out their work tasks in a healthy, practical and safe manner. The role of education as a countermeasure to occupational injury and illness is being re-examined by health and safety practitioners and safety training is being considered as a vital part of accident prevention strategies. Effective training programmes should guarantee that workers possess the skills they require to complete their tasks in a safe and healthy manner. Very little is known about the type and quality of training workers undergo and how that training affects the safety outcomes of companies. There has been an attempt over the past 20 years to increase the research on safety communications and a great deal of this research has been focused on safety warnings; with the greatest attention been placed on the components of safety signs, such as colours, size, shapes and icons. The effects of these components on comprehension with relation to age and education have not received the same amount of attention. The impact of familiarity on safety warnings with respect to age and education has also received very little attention; despite the knowledge that familiarity has been shown to increase the noticing of warnings and the comprehension of safety information. Despite the increase in the research on safety communication, the literature and research in South Africa is scarce. Studies present in South Africa do not encompass the comprehension of safety signs or the ability of individuals with different age and education levels to learn the information included in the signs. Due to the multi-linguistic nature of South Africa and the fact that South Africa is an Industrially Developing Country (IDC) with high levels of illiteracy, issues such as the comprehension of safety information must be addressed. Therefore, the objectives of this study were to investigate the effects of safety sign attributes on learning and familiarity, in subjects that differed in age and education levels. These effects were investigated through measuring the reaction and response times of the different subject groups, as well as the number of components in the safety signs that were recalled correctly. The combined results of these responses were used as a measure for familiarity. A set of signs was designed for the study by the researcher using three different colours, three different shapes, three different icons and text. Certain variables were omitted from some signs to create the test pool and the eight conditions that were tested in a laboratory setting. Each condition contained different components of the designed signs and 60 subjects were used to test these conditions. The subjects were placed in groups according to their age and level of education. Subjects were required to learn a set of 64 signs, either “With Occlusion” or “Without Occlusion”, and asked to recall the meanings of the components in the signs. Reaction time, response time and error rate were measured from the responses. The results showed that the conditions resulted in different reaction times, response times and error rates for all subjects. The signs containing a combination of shapes and text resulted in the best performance. Age and education were found to have a significant effect on various performance criteria as did the method in which the signs were displayed (Occlusion and No Occlusion). The increased repetitions and sessions elicited lower reaction times, response times and error rates. The conclusions drawn from this study suggest that different attributes be considered carefully when subjects are expected to learn and recall information in safety signs. The results also highlighted the need to increase the exposure of individuals to safety signs in order to increase familiarity and ultimately improve the recall and comprehension of the attributes.
- Full Text:
- Date Issued: 2011
Effects of habitat patch size and isolation on the population structure of two siphonarian limpets
- Authors: Johnson, Linda Gail
- Date: 2011
- Subjects: Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5679 , http://hdl.handle.net/10962/d1005364 , Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Description: Habitat fragmentation is a fundamental process that determines trends and patterns of distribution and density of organisms. These patterns and trends have been the focus of numerous terrestrial and marine studies and have led to the development of several explanatory hypotheses. Systems and organisms are dynamic and no single hypothesis has adequately accounted for these observed trends. It is therefore important to understand the interaction of these processes and patterns to explain the mechanisms controlling population dynamics. The main aim of this thesis was to test the effect of patch size and isolation on organisms with different modes of dispersal. Mode of dispersal has previously been examined as a factor influencing the effects that habitat fragmentation has on organisms. Very few studies have, however, examined the mode of dispersal of marine organisms because it has long been assumed that marine animals are not directly influenced by habitat fragmentation because of large-scale dispersal. I used two co-occurring species of siphonariid limpets with different modes of dispersal to highlight that not only are marine organisms affected by habitat fragmentation but that they are affected in different ways. The two species of limpet, Siphonaria serrata and Siphonaria concinna, are found within the same habitat and have the same geographic range along the South African coastline, however, they have different modes of dispersal and development. The effect of patch size on organism density has been examined to a great extent with varied results. This study investigated whether habitat patch size played a key role in determining population density and limpet body sizes. The two species are found on the eastern and southern coasts of South Africa were examined across this entire biogeographic range. Patch size was found to have a significant effect on population density of the pelagic developer, S. concinna, but not the direct developing S. serrata. Patch size did play a role in determining limpet body size for both species. S. concinna body size was proposed to be effected directly by patch size whilst S. serrata body size was proposed to be affected indirectly by the effects of the S. concinna densities. The same patterns and trends were observed at five of the seven examined regions across the biogeographic range. The trends observed for S. concinna with respect to patch size conform to the source-sink hypothesis with large habitat patches acting as the source populations whilst the small habitat patches acted as the sink populations. Many previous studies have focused on the effects of habitat patch size at one point in time or over one season. I tested the influence of habitat patch size on the two species of limpets over a period of twelve months to determine whether the trends observed were consistent over time or whether populations varied with time. S. concinna showed a consistently significant difference between small and large patches; whilst S. serrata did not follow a consistent pattern. The mode of dispersal for the two limpets was used to explain the different trends shown by the two species. This examination allowed for the determining of source and sink populations for S. concinna through the examination of fluctuations in limpet body sizes and population densities at small and large habitat patches over twelve months. The direct developing S. serrata trends could not be explained using source-sink theory, as populations were independent from one another. S. serrata demonstrated body size differences at small and large patches which, may be explained by interspecific and intraspecific competition. Habitat isolation is known to play an important role in determining the structure of assemblages and the densities of populations. In this study the population density of the pelagic developing S. concinna showed a weak influence of degree of isolation whilst that of the direct developing S. serrata did not, which may be because of habitat patches along the South African coastline not having great enough degrees of isolation. The population size-structure was influenced directly influenced by isolation for S. concinna, whilst the different population size structure for S. serrata may be explained by assemblage co-dependence. The mode of dispersal showed effects on the relationship of population density and population size-structure with habitat size and isolation. This study indicates the importance of investigating patterns and processes across a range of spatial and temporal scales to gain a comprehensive understanding of factors effecting intertidal organisms.
- Full Text:
- Date Issued: 2011
- Authors: Johnson, Linda Gail
- Date: 2011
- Subjects: Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5679 , http://hdl.handle.net/10962/d1005364 , Siphonaria , Limpets , Population biology , Marine ecology , Habitat selection , Animals -- Dispersal , Ecological heterogeneity , Animal populations , Biodiversity
- Description: Habitat fragmentation is a fundamental process that determines trends and patterns of distribution and density of organisms. These patterns and trends have been the focus of numerous terrestrial and marine studies and have led to the development of several explanatory hypotheses. Systems and organisms are dynamic and no single hypothesis has adequately accounted for these observed trends. It is therefore important to understand the interaction of these processes and patterns to explain the mechanisms controlling population dynamics. The main aim of this thesis was to test the effect of patch size and isolation on organisms with different modes of dispersal. Mode of dispersal has previously been examined as a factor influencing the effects that habitat fragmentation has on organisms. Very few studies have, however, examined the mode of dispersal of marine organisms because it has long been assumed that marine animals are not directly influenced by habitat fragmentation because of large-scale dispersal. I used two co-occurring species of siphonariid limpets with different modes of dispersal to highlight that not only are marine organisms affected by habitat fragmentation but that they are affected in different ways. The two species of limpet, Siphonaria serrata and Siphonaria concinna, are found within the same habitat and have the same geographic range along the South African coastline, however, they have different modes of dispersal and development. The effect of patch size on organism density has been examined to a great extent with varied results. This study investigated whether habitat patch size played a key role in determining population density and limpet body sizes. The two species are found on the eastern and southern coasts of South Africa were examined across this entire biogeographic range. Patch size was found to have a significant effect on population density of the pelagic developer, S. concinna, but not the direct developing S. serrata. Patch size did play a role in determining limpet body size for both species. S. concinna body size was proposed to be effected directly by patch size whilst S. serrata body size was proposed to be affected indirectly by the effects of the S. concinna densities. The same patterns and trends were observed at five of the seven examined regions across the biogeographic range. The trends observed for S. concinna with respect to patch size conform to the source-sink hypothesis with large habitat patches acting as the source populations whilst the small habitat patches acted as the sink populations. Many previous studies have focused on the effects of habitat patch size at one point in time or over one season. I tested the influence of habitat patch size on the two species of limpets over a period of twelve months to determine whether the trends observed were consistent over time or whether populations varied with time. S. concinna showed a consistently significant difference between small and large patches; whilst S. serrata did not follow a consistent pattern. The mode of dispersal for the two limpets was used to explain the different trends shown by the two species. This examination allowed for the determining of source and sink populations for S. concinna through the examination of fluctuations in limpet body sizes and population densities at small and large habitat patches over twelve months. The direct developing S. serrata trends could not be explained using source-sink theory, as populations were independent from one another. S. serrata demonstrated body size differences at small and large patches which, may be explained by interspecific and intraspecific competition. Habitat isolation is known to play an important role in determining the structure of assemblages and the densities of populations. In this study the population density of the pelagic developing S. concinna showed a weak influence of degree of isolation whilst that of the direct developing S. serrata did not, which may be because of habitat patches along the South African coastline not having great enough degrees of isolation. The population size-structure was influenced directly influenced by isolation for S. concinna, whilst the different population size structure for S. serrata may be explained by assemblage co-dependence. The mode of dispersal showed effects on the relationship of population density and population size-structure with habitat size and isolation. This study indicates the importance of investigating patterns and processes across a range of spatial and temporal scales to gain a comprehensive understanding of factors effecting intertidal organisms.
- Full Text:
- Date Issued: 2011
Emplacement of the 2.44 Ga ultramafic layered Kemi intrusion, Finland PGE, geochemical and Sm-Nd isotopic implications
- Authors: Linkermann, Sean Aaron
- Date: 2011
- Subjects: Chromite -- Finland -- Kemi , Mining geology -- Finland -- Kemi , Geochemistry -- Finland -- Kemi , Petrology -- Finland -- Kemi
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4940 , http://hdl.handle.net/10962/d1005552 , Chromite -- Finland -- Kemi , Mining geology -- Finland -- Kemi , Geochemistry -- Finland -- Kemi , Petrology -- Finland -- Kemi
- Description: Europe’s largest chrome deposit is hosted by the 2.44 Ga Kemi ultramafic layered intrusion. The lower half of the intrusion consists of peridotites, pyroxenites and chromitite layers while the upper half consists of websterites, gabbronorites and leucogabbros. The mafic minerals of the lower and upper parts of the intrusion are altered to serpentine, chlorite, talc, amphiboles and carbonates. However, the original mineralogy is still preserved in the middle part of the intrusion. Earlier work on the Kemi intrusion concentrated mainly on the economically important chromitite layers and suggested that these layers were formed through contamination of a single pulse of primitive magma by underlying Archaean basement crustal material. The broad variations of the major element concentrations reflect variations in the mode of the Kemi rocks. The petrology, which shows olivine- and orthopyroxene-dominated rocks in the lower portion of the intrusion to plagioclase- and clinopyroxene-dominated rocks in the upper portion, shows a gross consistency with a fractional crystallization process.The incompatible elements are relatively enriched in the lower portion of the intrusion which is not consistent with a broad fractional crystallization process. These variations suggest that the ultramafic portion of the KemiIntrusion is relatively enriched in trapped liquid compared to the mafic portion.ε2.44 Nd values ranges from +4 (consistent with depleted mantle source) to -10 (indicating a contribution from Archaean crust). The lower peridotites, pyroxenites and websterites have ε2.44 Nd values ranging between depleted mantle signatures and -2, whereas the gabbroic cumulates have ε2.44 Nd values which cover a range from around -5 to -10. Nd isotopic variation in the lower part of the profile is punctuated by distinct spikes to lower ε2.44 Nd corresponding to the chromitite horizons. Both the lower and upper portions of the Kemi Intrusion show enrichment of LREEC1 relative to HREEC1. The LREEC1 enriched values start to increase markedly from about the 1000 meter mark and continue to increase in value towards the roof of the intrusion.The main enrichment of PGE (ΣPPGE = 55 to 148 ppb) occurs approximately 90 to 160 m above the basal contact, beginning within andcontinuing above the main chromitite ore horizon. The mantle-normalized PGE abundances of the main chromitite horizon and the peridotites and pyroxenites below it show enrichment of IPGEPM (Os + Ir + Ru) relative to PPGEPM (Rh + Pd + Pt). In contrast, the overlying rocks are characterised by enrichment of PPGEPM relative to IPGEPM. These PGE-patterns suggest the influence of two distinct controlling processes above and below the main chromitite reef.The isotopic data are consistent with the initial introduction of multiple pulses of depleted mantle-derived magma crystallising olivine and pyroxene. Before the parent magma was fed into the Kemi magma chamber, it underwent crustal contamination and assimilation in a staging chamber within the lower crust. Some of these pulses were “critically crustally contaminated”, inducing chromite saturation and precipitation. The modelling also predicts minor in-situ contamination of the parent magma in the Kemi chamber with its wall and roof rocks. Above the main chromitite layer (about 160 m above the basal contact), the chromite content decreases and the PPGEPM/IPGEPM values increase which is consistent with scavenging of the IPGE into the lowermost layers and/or evolving magma compositions. Above 1000 m, the isotopic and REE data indicate a new magma pulse which has also been extensively contaminated in the staging magma chamber before emplacement into the Kemi magma chamber. The contamination in the staging magma chamber increased which is reflected in a progressively larger crustal component towards the top of the Kemi Intrusion
- Full Text:
- Date Issued: 2011
- Authors: Linkermann, Sean Aaron
- Date: 2011
- Subjects: Chromite -- Finland -- Kemi , Mining geology -- Finland -- Kemi , Geochemistry -- Finland -- Kemi , Petrology -- Finland -- Kemi
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4940 , http://hdl.handle.net/10962/d1005552 , Chromite -- Finland -- Kemi , Mining geology -- Finland -- Kemi , Geochemistry -- Finland -- Kemi , Petrology -- Finland -- Kemi
- Description: Europe’s largest chrome deposit is hosted by the 2.44 Ga Kemi ultramafic layered intrusion. The lower half of the intrusion consists of peridotites, pyroxenites and chromitite layers while the upper half consists of websterites, gabbronorites and leucogabbros. The mafic minerals of the lower and upper parts of the intrusion are altered to serpentine, chlorite, talc, amphiboles and carbonates. However, the original mineralogy is still preserved in the middle part of the intrusion. Earlier work on the Kemi intrusion concentrated mainly on the economically important chromitite layers and suggested that these layers were formed through contamination of a single pulse of primitive magma by underlying Archaean basement crustal material. The broad variations of the major element concentrations reflect variations in the mode of the Kemi rocks. The petrology, which shows olivine- and orthopyroxene-dominated rocks in the lower portion of the intrusion to plagioclase- and clinopyroxene-dominated rocks in the upper portion, shows a gross consistency with a fractional crystallization process.The incompatible elements are relatively enriched in the lower portion of the intrusion which is not consistent with a broad fractional crystallization process. These variations suggest that the ultramafic portion of the KemiIntrusion is relatively enriched in trapped liquid compared to the mafic portion.ε2.44 Nd values ranges from +4 (consistent with depleted mantle source) to -10 (indicating a contribution from Archaean crust). The lower peridotites, pyroxenites and websterites have ε2.44 Nd values ranging between depleted mantle signatures and -2, whereas the gabbroic cumulates have ε2.44 Nd values which cover a range from around -5 to -10. Nd isotopic variation in the lower part of the profile is punctuated by distinct spikes to lower ε2.44 Nd corresponding to the chromitite horizons. Both the lower and upper portions of the Kemi Intrusion show enrichment of LREEC1 relative to HREEC1. The LREEC1 enriched values start to increase markedly from about the 1000 meter mark and continue to increase in value towards the roof of the intrusion.The main enrichment of PGE (ΣPPGE = 55 to 148 ppb) occurs approximately 90 to 160 m above the basal contact, beginning within andcontinuing above the main chromitite ore horizon. The mantle-normalized PGE abundances of the main chromitite horizon and the peridotites and pyroxenites below it show enrichment of IPGEPM (Os + Ir + Ru) relative to PPGEPM (Rh + Pd + Pt). In contrast, the overlying rocks are characterised by enrichment of PPGEPM relative to IPGEPM. These PGE-patterns suggest the influence of two distinct controlling processes above and below the main chromitite reef.The isotopic data are consistent with the initial introduction of multiple pulses of depleted mantle-derived magma crystallising olivine and pyroxene. Before the parent magma was fed into the Kemi magma chamber, it underwent crustal contamination and assimilation in a staging chamber within the lower crust. Some of these pulses were “critically crustally contaminated”, inducing chromite saturation and precipitation. The modelling also predicts minor in-situ contamination of the parent magma in the Kemi chamber with its wall and roof rocks. Above the main chromitite layer (about 160 m above the basal contact), the chromite content decreases and the PPGEPM/IPGEPM values increase which is consistent with scavenging of the IPGE into the lowermost layers and/or evolving magma compositions. Above 1000 m, the isotopic and REE data indicate a new magma pulse which has also been extensively contaminated in the staging magma chamber before emplacement into the Kemi magma chamber. The contamination in the staging magma chamber increased which is reflected in a progressively larger crustal component towards the top of the Kemi Intrusion
- Full Text:
- Date Issued: 2011
Ericoid mycorrhizal fungi and potential for inoculation of commercial berry species (Vaccinium corymbosium L.)
- Authors: Bizabani, Christine
- Date: 2011
- Subjects: Ericaceae , Mycorrhizas , Fynbos
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4136 , http://hdl.handle.net/10962/d1016127
- Description: Ericaceous plants are the richest growth form of the fynbos vegetation of South Africa. The fynbos is characterized by highly leached acidic soils, low mineral nutrients and climatically it is a winter rainfall and dry summer region. Ericoid mycorrhizal fungi associate with Erica species enhancing their ability to access essential nutrients for survival under unfavourable growth conditions. The aim of this study was to select local Ericaceae plant species and to isolate, identify and characterize the ericoid endophytes and assess these isolates as potential inocula for commercial berry species. Two ericaceous plants Erica cerinthoides L. and Erica demmissa Klotzsch ex Benth. were identified from the Mountain Drive area of Grahamstown, Eastern Cape. Root staining was used to confirm the mycorrhizal status of both plants. Hyphal coils typical of ericoid association were observed within the epidermal cells of the hair roots under a light microscope. The endophytes were successfully isolated in pure culture on 2% malt extract agar (MEA) and modified Fontana medium. Cultural morphology and microscopy were used for initial identification. Two slow growing isolates were selected. These isolates were further subjected to molecular identification; extracted DNA was amplified using ITS1 and ITS4 fungal primers. The rDNA gene internal transcriber spacer (ITS) was then sequenced and analyzed by comparison to sequences in the GenBank. On the basis of percentage sequence identity Lachnum Retz. species and Cadophora Lagerb. & Melin species were identified as the ericoid endophytes of E. cerinthoides and E. demmissa respectively. The optimum growth parameters of the fungal isolates were determined in 2% MEA incubated at varying temperatures and pH. It was established that both species had optimum growth at 27⁰C and pH 5. The Ericaceae species are sometimes found in metal contaminated sites were ericoid fungi have been proved to alleviate toxicity of their host. The fungal isolates were grown in increasing concentration of Cu²⁺ and Zn²⁺ in 2% MEA. The growth of Lachnum species decreased with increasing Zn²⁺ ions above 2.7 mM while Cadophora species showed a change in morphology and also decreased in growth with increased ion concentration. However there were no significant differences recorded in the growth of Cadophora and Lachnum species on increasing Cu²⁺ concentration. Lachnum and Cadophora isolates were formulated into a semi solid inoculum and inoculated onto micropropagated Vaccinni corymbosum L. plantlets of 5 different varieties. Colonization was low for all varieties, Elliott and Brightwell varieties recorded the highest colonization of 35% and 31% respectively. Lachnum species infected roots showed potential ericoid structures while the Cadophora inoculated plantlets had hyphal coils within the cortical cells typical of ericoid mycorrhizas. Inoculation significantly enhanced the shoot growth of Brightwell and Elliott varieties. The Chandler variety inoculated with Lachnum species showed improved shoot dry weight. The Bluecrop and Elliott varieties inoculated with Cadophora and Lachnum accumulated more root biomass. All inoculated Bluecrop plantlets had an improved canopy growth index. Brightwell plantlets inoculated with Lachnum species also had an enhanced canopy growth index. The growth responses were variable within varieties and between varieties. Treatments with the Cadophora and Lachnum have shown potential in the promotion of growth of the Blueberry species. The findings indicate the need to conduct trials under conditions which simulate the commercial growth conditions so as explore the optimum potential of the isolates.
- Full Text:
- Date Issued: 2011
- Authors: Bizabani, Christine
- Date: 2011
- Subjects: Ericaceae , Mycorrhizas , Fynbos
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4136 , http://hdl.handle.net/10962/d1016127
- Description: Ericaceous plants are the richest growth form of the fynbos vegetation of South Africa. The fynbos is characterized by highly leached acidic soils, low mineral nutrients and climatically it is a winter rainfall and dry summer region. Ericoid mycorrhizal fungi associate with Erica species enhancing their ability to access essential nutrients for survival under unfavourable growth conditions. The aim of this study was to select local Ericaceae plant species and to isolate, identify and characterize the ericoid endophytes and assess these isolates as potential inocula for commercial berry species. Two ericaceous plants Erica cerinthoides L. and Erica demmissa Klotzsch ex Benth. were identified from the Mountain Drive area of Grahamstown, Eastern Cape. Root staining was used to confirm the mycorrhizal status of both plants. Hyphal coils typical of ericoid association were observed within the epidermal cells of the hair roots under a light microscope. The endophytes were successfully isolated in pure culture on 2% malt extract agar (MEA) and modified Fontana medium. Cultural morphology and microscopy were used for initial identification. Two slow growing isolates were selected. These isolates were further subjected to molecular identification; extracted DNA was amplified using ITS1 and ITS4 fungal primers. The rDNA gene internal transcriber spacer (ITS) was then sequenced and analyzed by comparison to sequences in the GenBank. On the basis of percentage sequence identity Lachnum Retz. species and Cadophora Lagerb. & Melin species were identified as the ericoid endophytes of E. cerinthoides and E. demmissa respectively. The optimum growth parameters of the fungal isolates were determined in 2% MEA incubated at varying temperatures and pH. It was established that both species had optimum growth at 27⁰C and pH 5. The Ericaceae species are sometimes found in metal contaminated sites were ericoid fungi have been proved to alleviate toxicity of their host. The fungal isolates were grown in increasing concentration of Cu²⁺ and Zn²⁺ in 2% MEA. The growth of Lachnum species decreased with increasing Zn²⁺ ions above 2.7 mM while Cadophora species showed a change in morphology and also decreased in growth with increased ion concentration. However there were no significant differences recorded in the growth of Cadophora and Lachnum species on increasing Cu²⁺ concentration. Lachnum and Cadophora isolates were formulated into a semi solid inoculum and inoculated onto micropropagated Vaccinni corymbosum L. plantlets of 5 different varieties. Colonization was low for all varieties, Elliott and Brightwell varieties recorded the highest colonization of 35% and 31% respectively. Lachnum species infected roots showed potential ericoid structures while the Cadophora inoculated plantlets had hyphal coils within the cortical cells typical of ericoid mycorrhizas. Inoculation significantly enhanced the shoot growth of Brightwell and Elliott varieties. The Chandler variety inoculated with Lachnum species showed improved shoot dry weight. The Bluecrop and Elliott varieties inoculated with Cadophora and Lachnum accumulated more root biomass. All inoculated Bluecrop plantlets had an improved canopy growth index. Brightwell plantlets inoculated with Lachnum species also had an enhanced canopy growth index. The growth responses were variable within varieties and between varieties. Treatments with the Cadophora and Lachnum have shown potential in the promotion of growth of the Blueberry species. The findings indicate the need to conduct trials under conditions which simulate the commercial growth conditions so as explore the optimum potential of the isolates.
- Full Text:
- Date Issued: 2011
Evaluation of model systems for the study of protein association / incorporation of Beta-Methylamino-L-Alanine (BMAA)
- Authors: Visser, Claire
- Date: 2011
- Subjects: Neurotoxic agents , Nervous system -- Diseases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10314 , http://hdl.handle.net/10948/1451 , Neurotoxic agents , Nervous system -- Diseases
- Description: β-methylamino-L-alanine (BMAA) is thought to be a contributing factor of Amyotrophic Lateral Sclerosis-Parkinsonism Dementia Complex (ALS/PDC). It has been shown that the levels of toxin ingestion by humans are too low to cause disease. However, it has recently been theorized that this toxin is bioaccumulated within cells. Via a process of slow release from this reservoir, the BMAA is able to bring about neurotoxicity. Mechanisms of uptake and bioaccumulation of BMAA have been proposed in several publications; however the mechanism of protein incorporation of BMAA has not yet been identified. Identifying suitable model systems would be a prerequisite in order for future studies on BMAA protein incorporation. Three specific models were therefore chosen for investigation; mammalian cell lines including C2C12 and HT29, a prokaryotic (E. coli) expression system and yeast cells. The cytotoxity of BMAA was established for the mammalian cell lines and further investigation of BMAA incorporation into cellular proteins was performed on all three above mentioned models. Samples were run on HPLC-MS in order to determine uptake of BMAA into cells or lack thereof. Results indicate negligible cytotoxicity as measured by MTT and CellTitre Blue assays, limited uptake and protein incorporation of BMAA within the prokaryotic model and insignificant uptake of BMAA by yeast cells. Although the uptake of BMAA in the prokaryotic model was not extensive, there was indeed uptake. BMAA was not only taken up into the cells but was also observed in inclusion body protein samples after hydrolysis. After further investigation and use, this model could very well provide researchers with information pertaining to the mechanism of association of BMAA with proteins. Although the other models provided negative results, this research was valuable in the sense that one can narrow down the number of possible model systems available. Also, in seeking models for studying protein association/incorporation, the use of the final target cell is not relevant or necessary as the purpose of the research was to identify a model system in which the mechanism of protein association/incorporation can, in future, be studied.
- Full Text:
- Date Issued: 2011
- Authors: Visser, Claire
- Date: 2011
- Subjects: Neurotoxic agents , Nervous system -- Diseases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10314 , http://hdl.handle.net/10948/1451 , Neurotoxic agents , Nervous system -- Diseases
- Description: β-methylamino-L-alanine (BMAA) is thought to be a contributing factor of Amyotrophic Lateral Sclerosis-Parkinsonism Dementia Complex (ALS/PDC). It has been shown that the levels of toxin ingestion by humans are too low to cause disease. However, it has recently been theorized that this toxin is bioaccumulated within cells. Via a process of slow release from this reservoir, the BMAA is able to bring about neurotoxicity. Mechanisms of uptake and bioaccumulation of BMAA have been proposed in several publications; however the mechanism of protein incorporation of BMAA has not yet been identified. Identifying suitable model systems would be a prerequisite in order for future studies on BMAA protein incorporation. Three specific models were therefore chosen for investigation; mammalian cell lines including C2C12 and HT29, a prokaryotic (E. coli) expression system and yeast cells. The cytotoxity of BMAA was established for the mammalian cell lines and further investigation of BMAA incorporation into cellular proteins was performed on all three above mentioned models. Samples were run on HPLC-MS in order to determine uptake of BMAA into cells or lack thereof. Results indicate negligible cytotoxicity as measured by MTT and CellTitre Blue assays, limited uptake and protein incorporation of BMAA within the prokaryotic model and insignificant uptake of BMAA by yeast cells. Although the uptake of BMAA in the prokaryotic model was not extensive, there was indeed uptake. BMAA was not only taken up into the cells but was also observed in inclusion body protein samples after hydrolysis. After further investigation and use, this model could very well provide researchers with information pertaining to the mechanism of association of BMAA with proteins. Although the other models provided negative results, this research was valuable in the sense that one can narrow down the number of possible model systems available. Also, in seeking models for studying protein association/incorporation, the use of the final target cell is not relevant or necessary as the purpose of the research was to identify a model system in which the mechanism of protein association/incorporation can, in future, be studied.
- Full Text:
- Date Issued: 2011
Expression of heat shock proteins on the plasma membrane of cancer cells : a potential multi-chaperone complex that mediates migration
- Authors: Kenyon, Amy
- Date: 2011 , 2011-03-29
- Subjects: Heat shock proteins , Protein folding , Molecular chaperones , Cancer -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4122 , http://hdl.handle.net/10962/d1013362
- Description: Current dogma suggests that the Heat Shock Protein (Hsp) molecular chaperones and associated co-chaperones function primarily within the cell, although growing evidence suggests a role for these proteins on the plasma membrane of cancer cells. Hsp90 does not function independently in vivo, but instead functions with a variety of partner chaperones and co-chaperones, that include Hsp70 and Hsp90/Hsp70 organising protein (Hop), which are thought to regulate ATP hydrolysis and the binding of Hsp90 to its client proteins. Hsp90 on the plasma membrane appears to have distinct roles in pathways leading to cell motility, invasion and metastasis. We hypothesised that Hsp90 on the plasma membrane is present as part of a multi-chaperone complex that participates in the chaperone-assisted folding of client membrane proteins in a manner analogous to the intracellular chaperone complex. This study characterised the membrane expression of Hsp90, Hsp70 and Hop in different cell models of different adhesive and migratory capacity, namely MDA-MB-231 (metastatic adherent breast cancer cell line), MCF-7 (non-metastatic adherent breast cancer cell line), U937 and THP1 (monocytic leukemia suspension cell lines). Membrane expression of the Hsps was analysed using a combination of subcellular fractionation, biotin-streptavidin affinity purification and immunofluorescence. This study provided evidence to suggest that Hsp90, Hsp70 and Hop are membrane associated in MDA-MB-231 and MCF-7 breast cancer cells. Hsp90, Hsp70 and Hop associated with the plasma membrane such that at least part of the protein is located extracellularly. Immunofluorescence analysis showed that Hsp90, Hsp70 and Hop at the leading edge may localize to membrane ruffles in MDA-MB-231 cells, in accordance with the published role of Hsp90 in migration. An increase in this response was seen in cells stimulated to migrate with SDF-1. By immunoprecipitation, we isolated a putative extracellular membrane associated complex containing Hsp90, Hsp70 and Hop. Using soluble Hsp90 and antibodies against membrane associated Hsp90, we suggested roles for soluble extracellular Hsp90 in mediating migration by wound healing assays and inducing actin reorganisation and vinculin-based focal adhesion formation. The effects of extracellular Hsp90 are mediated by signalling through an ERK1/2 dependent pathway. An anti-Hsp90 antibody against an N-terminal epitope in Hsp90 appeared to be able to overcome the death inducing effects of a combination of SDF-1 and AMD3100, while soluble Hsp90 could not overcome this effect. We propose that this study provides preliminary evidence that extracellular Hsp90 functions as part of a multi-chaperone complex that includes Hsp70 and Hop. The extracellular Hsp90 chaperone complex may mediate cell processes such as migration by modulating the conformation of cell surface receptors, leading to downstream signalling.
- Full Text:
- Date Issued: 2011
- Authors: Kenyon, Amy
- Date: 2011 , 2011-03-29
- Subjects: Heat shock proteins , Protein folding , Molecular chaperones , Cancer -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4122 , http://hdl.handle.net/10962/d1013362
- Description: Current dogma suggests that the Heat Shock Protein (Hsp) molecular chaperones and associated co-chaperones function primarily within the cell, although growing evidence suggests a role for these proteins on the plasma membrane of cancer cells. Hsp90 does not function independently in vivo, but instead functions with a variety of partner chaperones and co-chaperones, that include Hsp70 and Hsp90/Hsp70 organising protein (Hop), which are thought to regulate ATP hydrolysis and the binding of Hsp90 to its client proteins. Hsp90 on the plasma membrane appears to have distinct roles in pathways leading to cell motility, invasion and metastasis. We hypothesised that Hsp90 on the plasma membrane is present as part of a multi-chaperone complex that participates in the chaperone-assisted folding of client membrane proteins in a manner analogous to the intracellular chaperone complex. This study characterised the membrane expression of Hsp90, Hsp70 and Hop in different cell models of different adhesive and migratory capacity, namely MDA-MB-231 (metastatic adherent breast cancer cell line), MCF-7 (non-metastatic adherent breast cancer cell line), U937 and THP1 (monocytic leukemia suspension cell lines). Membrane expression of the Hsps was analysed using a combination of subcellular fractionation, biotin-streptavidin affinity purification and immunofluorescence. This study provided evidence to suggest that Hsp90, Hsp70 and Hop are membrane associated in MDA-MB-231 and MCF-7 breast cancer cells. Hsp90, Hsp70 and Hop associated with the plasma membrane such that at least part of the protein is located extracellularly. Immunofluorescence analysis showed that Hsp90, Hsp70 and Hop at the leading edge may localize to membrane ruffles in MDA-MB-231 cells, in accordance with the published role of Hsp90 in migration. An increase in this response was seen in cells stimulated to migrate with SDF-1. By immunoprecipitation, we isolated a putative extracellular membrane associated complex containing Hsp90, Hsp70 and Hop. Using soluble Hsp90 and antibodies against membrane associated Hsp90, we suggested roles for soluble extracellular Hsp90 in mediating migration by wound healing assays and inducing actin reorganisation and vinculin-based focal adhesion formation. The effects of extracellular Hsp90 are mediated by signalling through an ERK1/2 dependent pathway. An anti-Hsp90 antibody against an N-terminal epitope in Hsp90 appeared to be able to overcome the death inducing effects of a combination of SDF-1 and AMD3100, while soluble Hsp90 could not overcome this effect. We propose that this study provides preliminary evidence that extracellular Hsp90 functions as part of a multi-chaperone complex that includes Hsp70 and Hop. The extracellular Hsp90 chaperone complex may mediate cell processes such as migration by modulating the conformation of cell surface receptors, leading to downstream signalling.
- Full Text:
- Date Issued: 2011
Feeding ecology and diet shift of long-beaked common dolphins Delphinus Capensis (Gray 1828) incidentally caught in anti-shark nets off Kwazulu-Natal, South Africa
- Authors: Ambrose, Shan Taryn
- Date: 2011
- Subjects: Common dolphin -- South Africa -- Kwazulu-Natal , Common dolphin -- Food -- South Africa -- Kwazulu-Natal , Common dolphin -- Ecology -- South Africa -- Kwazulu-Natal , Sardinops sagax -- South Africa -- Kwazulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5697 , http://hdl.handle.net/10962/d1005383 , Common dolphin -- South Africa -- Kwazulu-Natal , Common dolphin -- Food -- South Africa -- Kwazulu-Natal , Common dolphin -- Ecology -- South Africa -- Kwazulu-Natal , Sardinops sagax -- South Africa -- Kwazulu-Natal
- Description: The long-beaked common dolphin, Delphinus capensis (Gray 1828), is one of the most enigmatic predators feeding in the annual sardine run (Sardinops sagax) off the coast of KwaZulu-Natal (KZN), South Africa. In recent years, unpredictable inter-annual variations in the timing, spatial extent and intensity of the sardine run have been documented, possibly resulting in changes in the suite of prey available to the common dolphin during winter. Although the diets of a number of predators during the sardine run have been studied in detail (e.g. sharks and flying seabirds), little is known about the diet of long-beaked common dolphins during this period. Each year, a low number of common dolphins are incidentally caught in the anti-shark nets in the waters of KwaZulu-Natal. These captures provide a valuable source of data on selected aspects of the ecology of the long-beaked common dolphins along the KwaZulu-Natal coastline. The objective of this study was to provide new dietary data for the common dolphins feeding in the waters of KwaZulu-Natal during winter over the period 2000 to 2009, as well as to determine if any dietary changes had taken place since the common dolphin diet was last assessed, over 15 years ago. Stomach contents from 95 common dolphins (55 females, 40 males) caught between 2000 and 2009 were analysed and compared to historical data from dolphins caught between 1974 and 1992. Mesopelagic fish and squid dominated the diet, with 23 fish and 5 squid species represented in adult dolphins. Multidimensional Scaling (MDS) indicated that there was no resource partitioning between adult male and female dolphins. Numerical analyses indicated that there was a shift in the principal prey species consumed by the dolphins over the past decade, particularly during the winter. Prior to 1992, sardine comprised up to 49% of the total stomach contents, while chub mackerel (Scomber japonicus) was the dominant prey item (66% by mass) recorded in the stomach contents over the period 2000 to 2009. The shift in the relative contributions of sardine and mackerel in the diets of the dolphin appeared to correspond to fluctuations in the availability of the two principal prey species. Between 2000 and 2009, the diversity of the dolphins' diets was highest during the sardine run, reflecting the presence of a wide suite of predatory teleosts in the waters of KwaZulu-Natal during the annual sardine run. Conversely, prior to 2000, the diet was dominated by sardine during the peak of the sardine run, whilst diet diversity increased after this period. Apart from sardine and chub mackerel, elf (Pomatomus saltatrix), maasbanker (Trachurus delagoa), strepie (Sarpa salpa) and flying fish (Exocoetid sp.) also formed important components of the diet both prior to 1992, and over the last decade. Blubber thickness was assessed as an indicator of animal condition. No significant change in blubber total weight (R² = 0.0016, N = 185), nor dorsal, lateral or ventral blubber thickness (R² = 0.3146, R² = 0.0003, and R² = 0.0003 respectively, N = 78) was seen over the last 30 years (1970 to 2009). Results of stable isotope analyses conducted on tissue derived from the teeth of D. capensis indicated that there has been no significant shift in the trophic position (δ¹⁵N) and potential prey consumed (δ¹³C) over the corresponding period. These data would suggest that the long-beaked common dolphins along the KwaZulu-Natal coastline can be considered as opportunistic predators generally consuming the most abundant prey species available locally. As common dolphins feed opportunistically, this dietary shift appears to indicate changes in the shoaling characteristics of the most abundant fish prey in KwaZulu-Natal during winter. Given the “Data Deficient” status of the long-beaked common dolphin on the IUCN Red Data List, and the strong climatic forcing of the sardine run, such dietary data have important implications for their conservation in the light of expanding fisheries and climate change.
- Full Text:
- Date Issued: 2011
- Authors: Ambrose, Shan Taryn
- Date: 2011
- Subjects: Common dolphin -- South Africa -- Kwazulu-Natal , Common dolphin -- Food -- South Africa -- Kwazulu-Natal , Common dolphin -- Ecology -- South Africa -- Kwazulu-Natal , Sardinops sagax -- South Africa -- Kwazulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5697 , http://hdl.handle.net/10962/d1005383 , Common dolphin -- South Africa -- Kwazulu-Natal , Common dolphin -- Food -- South Africa -- Kwazulu-Natal , Common dolphin -- Ecology -- South Africa -- Kwazulu-Natal , Sardinops sagax -- South Africa -- Kwazulu-Natal
- Description: The long-beaked common dolphin, Delphinus capensis (Gray 1828), is one of the most enigmatic predators feeding in the annual sardine run (Sardinops sagax) off the coast of KwaZulu-Natal (KZN), South Africa. In recent years, unpredictable inter-annual variations in the timing, spatial extent and intensity of the sardine run have been documented, possibly resulting in changes in the suite of prey available to the common dolphin during winter. Although the diets of a number of predators during the sardine run have been studied in detail (e.g. sharks and flying seabirds), little is known about the diet of long-beaked common dolphins during this period. Each year, a low number of common dolphins are incidentally caught in the anti-shark nets in the waters of KwaZulu-Natal. These captures provide a valuable source of data on selected aspects of the ecology of the long-beaked common dolphins along the KwaZulu-Natal coastline. The objective of this study was to provide new dietary data for the common dolphins feeding in the waters of KwaZulu-Natal during winter over the period 2000 to 2009, as well as to determine if any dietary changes had taken place since the common dolphin diet was last assessed, over 15 years ago. Stomach contents from 95 common dolphins (55 females, 40 males) caught between 2000 and 2009 were analysed and compared to historical data from dolphins caught between 1974 and 1992. Mesopelagic fish and squid dominated the diet, with 23 fish and 5 squid species represented in adult dolphins. Multidimensional Scaling (MDS) indicated that there was no resource partitioning between adult male and female dolphins. Numerical analyses indicated that there was a shift in the principal prey species consumed by the dolphins over the past decade, particularly during the winter. Prior to 1992, sardine comprised up to 49% of the total stomach contents, while chub mackerel (Scomber japonicus) was the dominant prey item (66% by mass) recorded in the stomach contents over the period 2000 to 2009. The shift in the relative contributions of sardine and mackerel in the diets of the dolphin appeared to correspond to fluctuations in the availability of the two principal prey species. Between 2000 and 2009, the diversity of the dolphins' diets was highest during the sardine run, reflecting the presence of a wide suite of predatory teleosts in the waters of KwaZulu-Natal during the annual sardine run. Conversely, prior to 2000, the diet was dominated by sardine during the peak of the sardine run, whilst diet diversity increased after this period. Apart from sardine and chub mackerel, elf (Pomatomus saltatrix), maasbanker (Trachurus delagoa), strepie (Sarpa salpa) and flying fish (Exocoetid sp.) also formed important components of the diet both prior to 1992, and over the last decade. Blubber thickness was assessed as an indicator of animal condition. No significant change in blubber total weight (R² = 0.0016, N = 185), nor dorsal, lateral or ventral blubber thickness (R² = 0.3146, R² = 0.0003, and R² = 0.0003 respectively, N = 78) was seen over the last 30 years (1970 to 2009). Results of stable isotope analyses conducted on tissue derived from the teeth of D. capensis indicated that there has been no significant shift in the trophic position (δ¹⁵N) and potential prey consumed (δ¹³C) over the corresponding period. These data would suggest that the long-beaked common dolphins along the KwaZulu-Natal coastline can be considered as opportunistic predators generally consuming the most abundant prey species available locally. As common dolphins feed opportunistically, this dietary shift appears to indicate changes in the shoaling characteristics of the most abundant fish prey in KwaZulu-Natal during winter. Given the “Data Deficient” status of the long-beaked common dolphin on the IUCN Red Data List, and the strong climatic forcing of the sardine run, such dietary data have important implications for their conservation in the light of expanding fisheries and climate change.
- Full Text:
- Date Issued: 2011
Finite element analysis of a composite sandwich beam subjected to a four point bend
- Authors: Hove, Darlington
- Date: 2011
- Subjects: Sandwich construction -- Mathematical models , Composite materials -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10503 , http://hdl.handle.net/10948/1465 , Sandwich construction -- Mathematical models , Composite materials -- Research
- Description: The work in this dissertation deals with the global structural response and local damage effects of a simply supported natural fibre composite sandwich beam subjected to a four-point bend. For the global structural response, we are investigating the flexural behaviour of the composite sandwich beam. We begin by using the principle of virtual work to derive the linear and nonlinear Timoshenko beam theory. Based on these theories, we then proceed to develop the respective finite element models and then implement the numerical algorithm in MATLAB. Comparing the numerical results with experimental results from the CSIR, the numerical model correctly and qualitatively recovers the underlying mechanics with some noted deviances which are explained at the end. The local damage effect of interest is delamination and we begin by reviewing delamination theory with more emphasis on the cohesive zone model. The cohesive zone model relates the traction at the interface to the relative displacement of the interface thereby creating a material model of the interface. We then carry out a cohesive zone model delamination case study in MSC.Marc and MSC.Mentat software packages. The delamination modelling is carried out purely as a numerical study as there are no experimental results to validate the numerical results.
- Full Text:
- Date Issued: 2011
- Authors: Hove, Darlington
- Date: 2011
- Subjects: Sandwich construction -- Mathematical models , Composite materials -- Research
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10503 , http://hdl.handle.net/10948/1465 , Sandwich construction -- Mathematical models , Composite materials -- Research
- Description: The work in this dissertation deals with the global structural response and local damage effects of a simply supported natural fibre composite sandwich beam subjected to a four-point bend. For the global structural response, we are investigating the flexural behaviour of the composite sandwich beam. We begin by using the principle of virtual work to derive the linear and nonlinear Timoshenko beam theory. Based on these theories, we then proceed to develop the respective finite element models and then implement the numerical algorithm in MATLAB. Comparing the numerical results with experimental results from the CSIR, the numerical model correctly and qualitatively recovers the underlying mechanics with some noted deviances which are explained at the end. The local damage effect of interest is delamination and we begin by reviewing delamination theory with more emphasis on the cohesive zone model. The cohesive zone model relates the traction at the interface to the relative displacement of the interface thereby creating a material model of the interface. We then carry out a cohesive zone model delamination case study in MSC.Marc and MSC.Mentat software packages. The delamination modelling is carried out purely as a numerical study as there are no experimental results to validate the numerical results.
- Full Text:
- Date Issued: 2011
Heterothermy and seasonal patterns of metabolic rate in the southern African hedgehog (Atelerix frontalis)
- Authors: Hallam, Stacey Leigh
- Date: 2011
- Subjects: Atelerix , Metabolism -- Measurement
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10683 , http://hdl.handle.net/10948/1497 , Atelerix , Metabolism -- Measurement
- Description:
Animals that inhabit unfavourable habitats and experience seasons where the cost of maintenance exceeds the available energy resources have over time developed behavioural and physiological mechanisms to survive. These adaptations include changes in activity, improvement of cold tolerance by using nonshivering thermogenesis (NST), improvement of thermal conductance, reduction of body mass, or acclimation to colder temperatures (reduction of metabolic requirement). In addition some species exhibit heterothermy, in the form of either daily torpor or longer-term hibernation. The southern African hedgehog (Atelerix frontalis) is an excellent candidate to investigate the phenomenon of heterothermy because it is a small insectivore (summer body mass ca. 300 to 400g), burrows, inhabits harsh habitats and is not easy to find during the winter months. In this study I aimed to investigate whether A. frontalis exhibits seasonal differences in metabolic rate and furthermore if this species exhibits heterothermy. The study was carried out in the Northern Cape Province, South Africa. Hedgehogs were hand captured and their metabolic rates were measured using indirect calorimetry. Individuals were implanted with temperature dataloggers for a summer period (November 2009-January 2010) and a winter period (May-August 2009). The summer BMR of adult A. frontalis (0.448 ±0.035 mlO2/g/h, n=4) was significantly lower than their winter BMR (0.811 ±0.073 mlO2/g/h, n=4) and statistical analyses revealed that this was an affect caused by seasonal changes in the ambient environment. Individuals spent up to 84 percent of time during the measurement period torpid (-8°C
- Full Text:
- Date Issued: 2011
- Authors: Hallam, Stacey Leigh
- Date: 2011
- Subjects: Atelerix , Metabolism -- Measurement
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10683 , http://hdl.handle.net/10948/1497 , Atelerix , Metabolism -- Measurement
- Description:
Animals that inhabit unfavourable habitats and experience seasons where the cost of maintenance exceeds the available energy resources have over time developed behavioural and physiological mechanisms to survive. These adaptations include changes in activity, improvement of cold tolerance by using nonshivering thermogenesis (NST), improvement of thermal conductance, reduction of body mass, or acclimation to colder temperatures (reduction of metabolic requirement). In addition some species exhibit heterothermy, in the form of either daily torpor or longer-term hibernation. The southern African hedgehog (Atelerix frontalis) is an excellent candidate to investigate the phenomenon of heterothermy because it is a small insectivore (summer body mass ca. 300 to 400g), burrows, inhabits harsh habitats and is not easy to find during the winter months. In this study I aimed to investigate whether A. frontalis exhibits seasonal differences in metabolic rate and furthermore if this species exhibits heterothermy. The study was carried out in the Northern Cape Province, South Africa. Hedgehogs were hand captured and their metabolic rates were measured using indirect calorimetry. Individuals were implanted with temperature dataloggers for a summer period (November 2009-January 2010) and a winter period (May-August 2009). The summer BMR of adult A. frontalis (0.448 ±0.035 mlO2/g/h, n=4) was significantly lower than their winter BMR (0.811 ±0.073 mlO2/g/h, n=4) and statistical analyses revealed that this was an affect caused by seasonal changes in the ambient environment. Individuals spent up to 84 percent of time during the measurement period torpid (-8°C
- Full Text:
- Date Issued: 2011
Hydrological proceses, chemical variability, and multiple isotopestracing of water flow paths in the Kudumela Wetland- Limpopo Province, South Africa
- Authors: Mekiso, Feleke Abiyo
- Date: 2011
- Subjects: Kudumela Wetland -- South Africa -- Limpopo , Wetland hydrology -- South Africa -- Limpopo , Wetlands -- South Africa -- Limpopo , Wetland conservation -- South Africa -- Limpopo , Wetland management -- South Africa -- Limpopo , Isotopes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:6027 , http://hdl.handle.net/10962/d1006153 , Kudumela Wetland -- South Africa -- Limpopo , Wetland hydrology -- South Africa -- Limpopo , Wetlands -- South Africa -- Limpopo , Wetland conservation -- South Africa -- Limpopo , Wetland management -- South Africa -- Limpopo , Isotopes
- Description: The hydrology of the Kudumela Wetland, Limpopo Province of South Africa was studied from November 2005 to April 2007, involving both fieldwork and laboratory analyses. This study presents the results of an investigation of the hydrology of the Kudumela Wetland in South Africa, and its contribution to dry season flow in the Mohlapitsi and Olifants Rivers. Initially, 40 Piezometers were installed along seven transects and water levels monitored in order to understand water table level characteristics (fluctuations) with time. Water levels in transects one, three, the right bank portion of transect four and transect six showed fluctuations. Transect two, the left bank portion of transect four and transect five did not show significant temporal changes. The relationships between piezometer water levels, rainfall in the study area and stream flow observed at a river gauging station are not clear. The river within the wetland is a gaining stream because the water table level elevation is above that of the river. This indicates that the wetland is feeding the river. The northern part of the wetland (T1 and T2) is affected by artificial drains and most of the piezometers closest to the river channel showed the lowest variations. The relationships between rainfall, groundwater, and surface water at this site shows that stream flow did not respond quickly to precipitation as expected, even in months when rainfall increased (for example, 74 and 103mm during 08/02/06 and 18/02/06 respectively), and the groundwater levels did not show fluctuations, indicating that groundwater responds gradually to precipitation, and that the relationship between rainfall, groundwater and surface water is complex. The environmental stable isotopes (deuterium and oxygen-18) and the radioactive isotope (tritium) were analyzed, along with field observations of electrical conductivity (EC), pH, total alkalinity (Talka) and some major and minor dissolved ion analyses for tracing water dynamics in the study area. A total of 39 water samples was taken and analyzed from boreholes, auger holes, right bank and left bank drains, various points along the river and springs in four sampling visits to the wetland. The results did not clearly provide a temporal record of isotope and chemical variations in the various sources. Results from the most extensive sampling survey in April 2007 provide the most comprehensive overview of hydrological relationships. Clustering of the stable isotope data suggests that the water samples of upstream and downstream river, auger holes further south and most drains clustered together suggesting a common water source and almost all samples fall above the global (GMWL) and local (Pretoria MWL) meteoric water lines, while some fall between the global and Pretoria meteoric water lines. Six representative water samples were analyzed for major ion concentration. Both cation (Ca, Mg, K, and Na) and anion (HCO3, SO4, Cl, and NO3) analyses in November 2007 confirmed conclusions reached from field observations. The analysis shows that a single type of water (Ca, Mg-HCO3) is involved in the study area. In almost all major ion plots, the right bank drains, upstream river and downstream river samples grouped together in a single cluster. As the means for reliable river flow measurements were not available, except for the gauging station at the outlet of the valley, rough, semi-quantitative estimates were made during several field visits. These, suggest considerable losses of river flow into the gravel/boulder beds at and below a gabion dam at the head of the valley. Three major and several other left bank springs and right bank drains at transects T1 and T2 contributed to the river flow at all times. Along with the isotopic and chemical evidence, these observations have lead to a hypothesis that river water enters the wetland and flows back to the Mohlapitsi River through boulder beds underlying the wetland and through drains on the surface of the argillaceous aquitard covering the more conductive boulder beds. Deeper dolomitic groundwater does not appear to contribute to the water balance at least in the northern half of the wetland. Although environmental isotope and hydrochemistry results may not unequivocally prove this hypothesis they do not contradict it.
- Full Text:
- Date Issued: 2011
- Authors: Mekiso, Feleke Abiyo
- Date: 2011
- Subjects: Kudumela Wetland -- South Africa -- Limpopo , Wetland hydrology -- South Africa -- Limpopo , Wetlands -- South Africa -- Limpopo , Wetland conservation -- South Africa -- Limpopo , Wetland management -- South Africa -- Limpopo , Isotopes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:6027 , http://hdl.handle.net/10962/d1006153 , Kudumela Wetland -- South Africa -- Limpopo , Wetland hydrology -- South Africa -- Limpopo , Wetlands -- South Africa -- Limpopo , Wetland conservation -- South Africa -- Limpopo , Wetland management -- South Africa -- Limpopo , Isotopes
- Description: The hydrology of the Kudumela Wetland, Limpopo Province of South Africa was studied from November 2005 to April 2007, involving both fieldwork and laboratory analyses. This study presents the results of an investigation of the hydrology of the Kudumela Wetland in South Africa, and its contribution to dry season flow in the Mohlapitsi and Olifants Rivers. Initially, 40 Piezometers were installed along seven transects and water levels monitored in order to understand water table level characteristics (fluctuations) with time. Water levels in transects one, three, the right bank portion of transect four and transect six showed fluctuations. Transect two, the left bank portion of transect four and transect five did not show significant temporal changes. The relationships between piezometer water levels, rainfall in the study area and stream flow observed at a river gauging station are not clear. The river within the wetland is a gaining stream because the water table level elevation is above that of the river. This indicates that the wetland is feeding the river. The northern part of the wetland (T1 and T2) is affected by artificial drains and most of the piezometers closest to the river channel showed the lowest variations. The relationships between rainfall, groundwater, and surface water at this site shows that stream flow did not respond quickly to precipitation as expected, even in months when rainfall increased (for example, 74 and 103mm during 08/02/06 and 18/02/06 respectively), and the groundwater levels did not show fluctuations, indicating that groundwater responds gradually to precipitation, and that the relationship between rainfall, groundwater and surface water is complex. The environmental stable isotopes (deuterium and oxygen-18) and the radioactive isotope (tritium) were analyzed, along with field observations of electrical conductivity (EC), pH, total alkalinity (Talka) and some major and minor dissolved ion analyses for tracing water dynamics in the study area. A total of 39 water samples was taken and analyzed from boreholes, auger holes, right bank and left bank drains, various points along the river and springs in four sampling visits to the wetland. The results did not clearly provide a temporal record of isotope and chemical variations in the various sources. Results from the most extensive sampling survey in April 2007 provide the most comprehensive overview of hydrological relationships. Clustering of the stable isotope data suggests that the water samples of upstream and downstream river, auger holes further south and most drains clustered together suggesting a common water source and almost all samples fall above the global (GMWL) and local (Pretoria MWL) meteoric water lines, while some fall between the global and Pretoria meteoric water lines. Six representative water samples were analyzed for major ion concentration. Both cation (Ca, Mg, K, and Na) and anion (HCO3, SO4, Cl, and NO3) analyses in November 2007 confirmed conclusions reached from field observations. The analysis shows that a single type of water (Ca, Mg-HCO3) is involved in the study area. In almost all major ion plots, the right bank drains, upstream river and downstream river samples grouped together in a single cluster. As the means for reliable river flow measurements were not available, except for the gauging station at the outlet of the valley, rough, semi-quantitative estimates were made during several field visits. These, suggest considerable losses of river flow into the gravel/boulder beds at and below a gabion dam at the head of the valley. Three major and several other left bank springs and right bank drains at transects T1 and T2 contributed to the river flow at all times. Along with the isotopic and chemical evidence, these observations have lead to a hypothesis that river water enters the wetland and flows back to the Mohlapitsi River through boulder beds underlying the wetland and through drains on the surface of the argillaceous aquitard covering the more conductive boulder beds. Deeper dolomitic groundwater does not appear to contribute to the water balance at least in the northern half of the wetland. Although environmental isotope and hydrochemistry results may not unequivocally prove this hypothesis they do not contradict it.
- Full Text:
- Date Issued: 2011
Improved tree species discrimination at leaf level with hyperspectral data combining binary classifiers
- Authors: Dastile, Xolani Collen
- Date: 2011
- Subjects: Mathematical statistics , Analysis of variance , Nearest neighbor analysis (Statistics) , Trees--Classification
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5567 , http://hdl.handle.net/10962/d1002807 , Mathematical statistics , Analysis of variance , Nearest neighbor analysis (Statistics) , Trees--Classification
- Description: The purpose of the present thesis is to show that hyperspectral data can be used for discrimination between different tree species. The data set used in this study contains the hyperspectral measurements of leaves of seven savannah tree species. The data is high-dimensional and shows large within-class variability combined with small between-class variability which makes discrimination between the classes challenging. We employ two classification methods: G-nearest neighbour and feed-forward neural networks. For both methods, direct 7-class prediction results in high misclassification rates. However, binary classification works better. We constructed binary classifiers for all possible binary classification problems and combine them with Error Correcting Output Codes. We show especially that the use of 1-nearest neighbour binary classifiers results in no improvement compared to a direct 1-nearest neighbour 7-class predictor. In contrast to this negative result, the use of neural networks binary classifiers improves accuracy by 10% compared to a direct neural networks 7-class predictor, and error rates become acceptable. This can be further improved by choosing only suitable binary classifiers for combination.
- Full Text:
- Date Issued: 2011
- Authors: Dastile, Xolani Collen
- Date: 2011
- Subjects: Mathematical statistics , Analysis of variance , Nearest neighbor analysis (Statistics) , Trees--Classification
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5567 , http://hdl.handle.net/10962/d1002807 , Mathematical statistics , Analysis of variance , Nearest neighbor analysis (Statistics) , Trees--Classification
- Description: The purpose of the present thesis is to show that hyperspectral data can be used for discrimination between different tree species. The data set used in this study contains the hyperspectral measurements of leaves of seven savannah tree species. The data is high-dimensional and shows large within-class variability combined with small between-class variability which makes discrimination between the classes challenging. We employ two classification methods: G-nearest neighbour and feed-forward neural networks. For both methods, direct 7-class prediction results in high misclassification rates. However, binary classification works better. We constructed binary classifiers for all possible binary classification problems and combine them with Error Correcting Output Codes. We show especially that the use of 1-nearest neighbour binary classifiers results in no improvement compared to a direct 1-nearest neighbour 7-class predictor. In contrast to this negative result, the use of neural networks binary classifiers improves accuracy by 10% compared to a direct neural networks 7-class predictor, and error rates become acceptable. This can be further improved by choosing only suitable binary classifiers for combination.
- Full Text:
- Date Issued: 2011
In vitro drug-herb interaction potential of African medicinal plant products used by Type II diabetics
- Authors: Fang, Yuan Yuan
- Date: 2011
- Subjects: Materia medica, Vegetable -- South Africa , Drugs -- Therapeutic use , Drug-herb interactions -- South Africa , Non-insulin-dependent diabetes -- South Africa , Non-insulin-dependent diabetes -- Treatment -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10317 , http://hdl.handle.net/10948/1341 , Materia medica, Vegetable -- South Africa , Drugs -- Therapeutic use , Drug-herb interactions -- South Africa , Non-insulin-dependent diabetes -- South Africa , Non-insulin-dependent diabetes -- Treatment -- South Africa
- Description: In Africa, use of medicinal plants for the treatment of diabetes is very common. However, efficacy on co-administering of medicinal plants with therapeutic drugs hasn't been fully determined, especially for African medicinal plants. The current study focused on assessing the in vitro modulation effects of three popular African medicinal plants, namely: Aloe ferox, Sutherlandia frutescens and Prunus africana (including five commercial preparations containing these medicinal plants) on two of the most important anti-diabetic drug metabolising enzymes, Cytochrome P450 (CYP450) 2C9 and CYP3A4 and a key drug efflux transporter, P-glycoprotein (P-gp). Vivid® microsome-based screening kits were used to assess inhibitory potency of plants preparations on CYP2C9 and CYP3A4 enzymes activities. The study showed that P. africana was a more potent inhibitor of CYP2C9 and CYP3A4 activity than the corresponding positive controls Ginkgo biloba and St. John's wort, which are known to cause clinically significant drug-herb interactions. S. frutescens leaf extract demonstrated potent to moderate inhibition on both the tested CYP activities, while its commercial products (Promune® and Probetix®) possessed moderate to mild inhibitory effects on the activities of both CYPs. Potent inhibitory effect on CYP2C9 and CYP3A4 was seen with Aloe Ferox®. Prosit® and Aloes powder® showed potent to moderate inhibition on CYP2C9 activity and moderate to mild inhibition on CYP3A4 activity. In addition to CYP450 activity, the present study also investigated the effects of the selected medicinal plant products on the activity of the main drug efflux protein, P-gp. A screening assay was specifically developed to assess the potential for herbal remedies to interact with P-gp mediated drug absorption. The assay is based on the principle of the reversal of drug resistance in modified Caco-2 cells specifically altered to express high iv efflux protein activity. These cells display a multidrug resistance phenotype and the addition of a plant extract containing a P-gp inhibitor or substrate will inhibit or compete with any cytotoxic drug and consequently reverse the drug resistance. The suitability of the assay was confirmed using a known P-gp inhibitor. The study observed that the anti-proliferation effect of vinblastine was significantly enhanced in vinblastine-resistant Caco-2 cells, which have high P-gp expression, when they were exposed to the selected African herbal preparations. This observation indicates that the studied plant preparations may alter P-gp functionality and therefore lead to interference with the absorption of co-administered drugs. The outcomes of this study provide useful information on whether there are any potential drug-herb interactions between the commonly used African medicinal plants and oral anti-diabetic drugs, at the level of CYP and P-gp drug metabolism and could contribute to better therapeutic management of Type II diabetics. However these predicted interactions will need to be verified in a clinical setting.
- Full Text:
- Date Issued: 2011
- Authors: Fang, Yuan Yuan
- Date: 2011
- Subjects: Materia medica, Vegetable -- South Africa , Drugs -- Therapeutic use , Drug-herb interactions -- South Africa , Non-insulin-dependent diabetes -- South Africa , Non-insulin-dependent diabetes -- Treatment -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10317 , http://hdl.handle.net/10948/1341 , Materia medica, Vegetable -- South Africa , Drugs -- Therapeutic use , Drug-herb interactions -- South Africa , Non-insulin-dependent diabetes -- South Africa , Non-insulin-dependent diabetes -- Treatment -- South Africa
- Description: In Africa, use of medicinal plants for the treatment of diabetes is very common. However, efficacy on co-administering of medicinal plants with therapeutic drugs hasn't been fully determined, especially for African medicinal plants. The current study focused on assessing the in vitro modulation effects of three popular African medicinal plants, namely: Aloe ferox, Sutherlandia frutescens and Prunus africana (including five commercial preparations containing these medicinal plants) on two of the most important anti-diabetic drug metabolising enzymes, Cytochrome P450 (CYP450) 2C9 and CYP3A4 and a key drug efflux transporter, P-glycoprotein (P-gp). Vivid® microsome-based screening kits were used to assess inhibitory potency of plants preparations on CYP2C9 and CYP3A4 enzymes activities. The study showed that P. africana was a more potent inhibitor of CYP2C9 and CYP3A4 activity than the corresponding positive controls Ginkgo biloba and St. John's wort, which are known to cause clinically significant drug-herb interactions. S. frutescens leaf extract demonstrated potent to moderate inhibition on both the tested CYP activities, while its commercial products (Promune® and Probetix®) possessed moderate to mild inhibitory effects on the activities of both CYPs. Potent inhibitory effect on CYP2C9 and CYP3A4 was seen with Aloe Ferox®. Prosit® and Aloes powder® showed potent to moderate inhibition on CYP2C9 activity and moderate to mild inhibition on CYP3A4 activity. In addition to CYP450 activity, the present study also investigated the effects of the selected medicinal plant products on the activity of the main drug efflux protein, P-gp. A screening assay was specifically developed to assess the potential for herbal remedies to interact with P-gp mediated drug absorption. The assay is based on the principle of the reversal of drug resistance in modified Caco-2 cells specifically altered to express high iv efflux protein activity. These cells display a multidrug resistance phenotype and the addition of a plant extract containing a P-gp inhibitor or substrate will inhibit or compete with any cytotoxic drug and consequently reverse the drug resistance. The suitability of the assay was confirmed using a known P-gp inhibitor. The study observed that the anti-proliferation effect of vinblastine was significantly enhanced in vinblastine-resistant Caco-2 cells, which have high P-gp expression, when they were exposed to the selected African herbal preparations. This observation indicates that the studied plant preparations may alter P-gp functionality and therefore lead to interference with the absorption of co-administered drugs. The outcomes of this study provide useful information on whether there are any potential drug-herb interactions between the commonly used African medicinal plants and oral anti-diabetic drugs, at the level of CYP and P-gp drug metabolism and could contribute to better therapeutic management of Type II diabetics. However these predicted interactions will need to be verified in a clinical setting.
- Full Text:
- Date Issued: 2011
Initial investigations into dynamics of mesozooplankton community structure in Algoa Bay, South Africa
- Authors: Dali, Luzuko O'Brian
- Date: 2011
- Subjects: Zooplankton -- Research -- Indian Ocean -- South Africa , Phytoplankton -- Research -- Indian Ocean -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5715 , http://hdl.handle.net/10962/d1005401 , Zooplankton -- Research -- Indian Ocean -- South Africa , Phytoplankton -- Research -- Indian Ocean -- South Africa
- Description: As part of a long-term monitoring programme initiated by the South African Environmental Observation Network (SAEON) Elwandle Node, the spatio-temporal dynamics of mesozooplankton (200–2000 μm) community structure in Algoa Bay, on the Eastern Cape coastline of southern Africa, was investigated in summer and winter of 2008. Physical-chemical and biological variables were measured at selected sites in the eastern and western sectors of the Bay. During summer, nutrient rich waters upwelling into the eastern sector of the Bay contributed to significant spatial variation in selected physical-chemical variables. During winter, virtually no significant spatial patterns in the physical-chemical variables were observed (P>0.05 in all cases). For the majority of physical-chemical variables, no significant seasonal patterns in values were detected (P>0.05 in all cases). Notable exceptions were water column stability and water temperatures which were highest during summer, and seston, turbidity and ammonium concentrations which attained the highest values in winter. The striking seasonal pattern observed in the water column stability, coupled with the upwelling event, coincided with a strong seasonal pattern in the total surface and integrated chlorophyll-a concentrations within the Bay. During summer, the total surface phytoplankton biomass ranged from 1.87–3.11 μg.L⁻¹ and the integrated biomass values between 44.6 and 89.1 mg chl-a m⁻². In winter, surface chl-a concentrations ranged from 0.49 to 0.55 μg.L⁻¹ and integrated biomass from 13.5 to 13.8 mg chl-a m⁻². During both seasons, the large microphytoplankton (>20 μm) fraction contributed the most (>80%) to the total phytoplankton biomass suggesting that phytoplankton growth is not nutrient limited within the Bay. The total mesozooplankton abundance and biomass values during summer varied between 10088.92 and 28283.21 ind.m⁻³ and between 76.59 and 161.94 mg.m⁻³, respectively. During winter, total abundance and biomass of mesozooplankton within the Bay were significantly lower, ranging from 2392.49 to 11145.29 ind.m⁻³, and from 34.49 to 42.49 mg.m⁻³, respectively (P<0.05). During both seasons, cosmopolitan copepod species 200–500μm in size dominated the total mesozooplankton counts, numerically and in biomass. Hierarchical cluster analyses identified distinct zooplankton groupings within the Bay during both the summer (three groupings) and winter (four groupings) surveys. The different groupings identified during the two seasons were not associated with any specific geographic region or hydrological feature. Nonetheless, a distinct seasonal pattern in the mesozooplankton community was evident, largely reflecting the increased abundance of mesozooplankton during the summer survey. Canonical Correspondence Analyses (CCA) indicated that the zooplankton community structure within Algoa Bay reflected a complex interaction between physical-chemical (e.g. temperature, water column stability, turbidity, and nitrate, dissolved oxygen and nitrite concentrations) and biological factors (e.g. microphytoplankton and picophytoplankton concentrations). These data provide baseline information towards long-term monitoring programs that will be conducted in Algoa Bay, as part of the South African Environmental Observation Network (SAEON), in the near future.
- Full Text:
- Date Issued: 2011
- Authors: Dali, Luzuko O'Brian
- Date: 2011
- Subjects: Zooplankton -- Research -- Indian Ocean -- South Africa , Phytoplankton -- Research -- Indian Ocean -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5715 , http://hdl.handle.net/10962/d1005401 , Zooplankton -- Research -- Indian Ocean -- South Africa , Phytoplankton -- Research -- Indian Ocean -- South Africa
- Description: As part of a long-term monitoring programme initiated by the South African Environmental Observation Network (SAEON) Elwandle Node, the spatio-temporal dynamics of mesozooplankton (200–2000 μm) community structure in Algoa Bay, on the Eastern Cape coastline of southern Africa, was investigated in summer and winter of 2008. Physical-chemical and biological variables were measured at selected sites in the eastern and western sectors of the Bay. During summer, nutrient rich waters upwelling into the eastern sector of the Bay contributed to significant spatial variation in selected physical-chemical variables. During winter, virtually no significant spatial patterns in the physical-chemical variables were observed (P>0.05 in all cases). For the majority of physical-chemical variables, no significant seasonal patterns in values were detected (P>0.05 in all cases). Notable exceptions were water column stability and water temperatures which were highest during summer, and seston, turbidity and ammonium concentrations which attained the highest values in winter. The striking seasonal pattern observed in the water column stability, coupled with the upwelling event, coincided with a strong seasonal pattern in the total surface and integrated chlorophyll-a concentrations within the Bay. During summer, the total surface phytoplankton biomass ranged from 1.87–3.11 μg.L⁻¹ and the integrated biomass values between 44.6 and 89.1 mg chl-a m⁻². In winter, surface chl-a concentrations ranged from 0.49 to 0.55 μg.L⁻¹ and integrated biomass from 13.5 to 13.8 mg chl-a m⁻². During both seasons, the large microphytoplankton (>20 μm) fraction contributed the most (>80%) to the total phytoplankton biomass suggesting that phytoplankton growth is not nutrient limited within the Bay. The total mesozooplankton abundance and biomass values during summer varied between 10088.92 and 28283.21 ind.m⁻³ and between 76.59 and 161.94 mg.m⁻³, respectively. During winter, total abundance and biomass of mesozooplankton within the Bay were significantly lower, ranging from 2392.49 to 11145.29 ind.m⁻³, and from 34.49 to 42.49 mg.m⁻³, respectively (P<0.05). During both seasons, cosmopolitan copepod species 200–500μm in size dominated the total mesozooplankton counts, numerically and in biomass. Hierarchical cluster analyses identified distinct zooplankton groupings within the Bay during both the summer (three groupings) and winter (four groupings) surveys. The different groupings identified during the two seasons were not associated with any specific geographic region or hydrological feature. Nonetheless, a distinct seasonal pattern in the mesozooplankton community was evident, largely reflecting the increased abundance of mesozooplankton during the summer survey. Canonical Correspondence Analyses (CCA) indicated that the zooplankton community structure within Algoa Bay reflected a complex interaction between physical-chemical (e.g. temperature, water column stability, turbidity, and nitrate, dissolved oxygen and nitrite concentrations) and biological factors (e.g. microphytoplankton and picophytoplankton concentrations). These data provide baseline information towards long-term monitoring programs that will be conducted in Algoa Bay, as part of the South African Environmental Observation Network (SAEON), in the near future.
- Full Text:
- Date Issued: 2011
Investigating the role of heat shock proteins (Hsps) 40, 70 and 90 in the life cycle of Theiler's murine encephalomyelitis virus (TMEV)
- Mutsvunguma, Lorraine Zvichapera
- Authors: Mutsvunguma, Lorraine Zvichapera
- Date: 2011
- Subjects: Heat shock proteins , Picornaviruses , Encephalomyelitis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3966 , http://hdl.handle.net/10962/d1004025 , Heat shock proteins , Picornaviruses , Encephalomyelitis
- Description: Introduction: Picornaviruses are a family of RNA viruses which are economically and clinically significant. Like many other viruses, picornaviruses utilise host cell machinery to facilitate their replication and assembly, including heat shock proteins (Hsps). The aim of this research was to investigate the role of Hsp40, Hsp70 and Hsp90 during picornavirus infection using the cardiovirus, Theiler’s murine encephalomyelitis virus (TMEV), as a study model. Methodology: Picornavirus VP1 capsid proteins were analysed by multiple sequence alignment and multiple structural comparisons. Protein domain architecture was used to analyse Hsp90 cellular and viral client proteins. Effects of Hsp90 inhibitors, novobiocin and geldanamycin, on TMEV growth in BHK-21 cells was observed over a 48hr period. Localisation of Hsp40, Hsp90 and Hsp70 in TMEV-infected BHK-21 cells was investigated by indirect immunofluorescence and confocal microscopy. Results and Discussion: VP1 proteins of picornaviruses are highly divergent within the family at the amino acid level, which might be linked to the protein’s function in determining virus tropism and antibody neutralisation. An eight-stranded anti-parallel beta-barrel structure was found conserved in the VP1 protein structures which might be linked to the highly conserved picornavirus capsid assembly process. Absence of a common protein domain between Hsp90 viral and cellular client proteins that might be functionally connected to Hsp90, suggests that Hsp90 most likely recognises surface features rather than sequence motifs/patterns. The Hsp90 inhibitors, novobiocin and geldanamycin, had a negative effect on virus growth as virus-induced cytopathic effect was not observed in treated cell after 48hrs. TMEV 2C protein was detected by Western analysis in infected cell lysates treated with geldanamycin but not novobiocin, suggesting novobiocin affects the translation or processing of TMEV 2C. Immunofluorescence analysis of TMEV-infected cells showed a relocalisation of Hsp40 into the nucleus during infection. Overlap of Hsp40 and TMEV P1 was observed in the perinuclear region, suggesting colocalisation between these proteins. Hsp70 converged around the replication complex during infection but did not overlap with TMEV 2C. Hsp90 concentrated in the region of the replication complex where it overlapped with TMEV 2C and this redistribution was found to be dependent on the stage of infection. The overlap between Hsp90 and TMEV 2C signals observed, suggested colocalisation between the two proteins. Conclusion: This study identified Hsp90, Hsp70 and Hsp40 as possible host factors required in TMEV replication.
- Full Text:
- Date Issued: 2011
- Authors: Mutsvunguma, Lorraine Zvichapera
- Date: 2011
- Subjects: Heat shock proteins , Picornaviruses , Encephalomyelitis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3966 , http://hdl.handle.net/10962/d1004025 , Heat shock proteins , Picornaviruses , Encephalomyelitis
- Description: Introduction: Picornaviruses are a family of RNA viruses which are economically and clinically significant. Like many other viruses, picornaviruses utilise host cell machinery to facilitate their replication and assembly, including heat shock proteins (Hsps). The aim of this research was to investigate the role of Hsp40, Hsp70 and Hsp90 during picornavirus infection using the cardiovirus, Theiler’s murine encephalomyelitis virus (TMEV), as a study model. Methodology: Picornavirus VP1 capsid proteins were analysed by multiple sequence alignment and multiple structural comparisons. Protein domain architecture was used to analyse Hsp90 cellular and viral client proteins. Effects of Hsp90 inhibitors, novobiocin and geldanamycin, on TMEV growth in BHK-21 cells was observed over a 48hr period. Localisation of Hsp40, Hsp90 and Hsp70 in TMEV-infected BHK-21 cells was investigated by indirect immunofluorescence and confocal microscopy. Results and Discussion: VP1 proteins of picornaviruses are highly divergent within the family at the amino acid level, which might be linked to the protein’s function in determining virus tropism and antibody neutralisation. An eight-stranded anti-parallel beta-barrel structure was found conserved in the VP1 protein structures which might be linked to the highly conserved picornavirus capsid assembly process. Absence of a common protein domain between Hsp90 viral and cellular client proteins that might be functionally connected to Hsp90, suggests that Hsp90 most likely recognises surface features rather than sequence motifs/patterns. The Hsp90 inhibitors, novobiocin and geldanamycin, had a negative effect on virus growth as virus-induced cytopathic effect was not observed in treated cell after 48hrs. TMEV 2C protein was detected by Western analysis in infected cell lysates treated with geldanamycin but not novobiocin, suggesting novobiocin affects the translation or processing of TMEV 2C. Immunofluorescence analysis of TMEV-infected cells showed a relocalisation of Hsp40 into the nucleus during infection. Overlap of Hsp40 and TMEV P1 was observed in the perinuclear region, suggesting colocalisation between these proteins. Hsp70 converged around the replication complex during infection but did not overlap with TMEV 2C. Hsp90 concentrated in the region of the replication complex where it overlapped with TMEV 2C and this redistribution was found to be dependent on the stage of infection. The overlap between Hsp90 and TMEV 2C signals observed, suggested colocalisation between the two proteins. Conclusion: This study identified Hsp90, Hsp70 and Hsp40 as possible host factors required in TMEV replication.
- Full Text:
- Date Issued: 2011