Contributions of inshore and offshore sources of primary production to the foodweb, and the trophic connectivity between various habitats along a depth-gradient, in Sodwana Bay, Kwazulu-Natal, South Africa
- Authors: Parkinson, Matthew Cameron
- Date: 2013
- Subjects: Marine ecology -- South Africa -- Sodwana Bay , Food chains (Ecology) -- South Africa -- Sodwana Bay , Coastal ecology -- South Africa -- Sodwana Bay , Stable isotopes , Dinoflagellates , Marine algae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5179 , http://hdl.handle.net/10962/d1001630 , Marine ecology -- South Africa -- Sodwana Bay , Food chains (Ecology) -- South Africa -- Sodwana Bay , Coastal ecology -- South Africa -- Sodwana Bay , Stable isotopes , Dinoflagellates , Marine algae
- Description: Sodwana Bay, situated within the iSimangaliso Wetland Park, is ecologically important as it contains high-latitude corals and the most southerly known population of coelacanths. This thesis utilised stable isotope and lipid analyses to investigate the trophic ecology of the area, in particular, understanding the relative contribution of inshore and offshore primary production to consumers inhabiting intertidal and shallow subtidal, coral reef, deep reef, canyon head and pelagic habitats. Seaweeds, excluding certain species of red seaweeds with highly depleted carbon signatures, and phytoplankton, such as diatoms, were found to be the principal sources of primary production for all consumers. Offshore production was typified by dinoflagellates. Particulate organic matter (POM) was spatio-temporally variable. Three distinct productivity periods related to nutrient cycling were noted with enriched carbon signatures and higher organic matter loads associated with warmer water. Inshore primary production was an important source of carbon to consumers in all habitats with the exception of zooplankton that were more reliant on pelagic primary production. Benthic invertebrates reflected a gradient in the utilisation of inshore production, due to the reduced availability of this source further offshore. Consumers at the furthest sites offshore were found to include a substantial quantity of inshore-derived production in their diets. Fishes, which are more mobile, were found to incorporate a similar proportion of inshore production into their diets regardless of where they were collected from.
- Full Text:
- Date Issued: 2013
- Authors: Parkinson, Matthew Cameron
- Date: 2013
- Subjects: Marine ecology -- South Africa -- Sodwana Bay , Food chains (Ecology) -- South Africa -- Sodwana Bay , Coastal ecology -- South Africa -- Sodwana Bay , Stable isotopes , Dinoflagellates , Marine algae
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5179 , http://hdl.handle.net/10962/d1001630 , Marine ecology -- South Africa -- Sodwana Bay , Food chains (Ecology) -- South Africa -- Sodwana Bay , Coastal ecology -- South Africa -- Sodwana Bay , Stable isotopes , Dinoflagellates , Marine algae
- Description: Sodwana Bay, situated within the iSimangaliso Wetland Park, is ecologically important as it contains high-latitude corals and the most southerly known population of coelacanths. This thesis utilised stable isotope and lipid analyses to investigate the trophic ecology of the area, in particular, understanding the relative contribution of inshore and offshore primary production to consumers inhabiting intertidal and shallow subtidal, coral reef, deep reef, canyon head and pelagic habitats. Seaweeds, excluding certain species of red seaweeds with highly depleted carbon signatures, and phytoplankton, such as diatoms, were found to be the principal sources of primary production for all consumers. Offshore production was typified by dinoflagellates. Particulate organic matter (POM) was spatio-temporally variable. Three distinct productivity periods related to nutrient cycling were noted with enriched carbon signatures and higher organic matter loads associated with warmer water. Inshore primary production was an important source of carbon to consumers in all habitats with the exception of zooplankton that were more reliant on pelagic primary production. Benthic invertebrates reflected a gradient in the utilisation of inshore production, due to the reduced availability of this source further offshore. Consumers at the furthest sites offshore were found to include a substantial quantity of inshore-derived production in their diets. Fishes, which are more mobile, were found to incorporate a similar proportion of inshore production into their diets regardless of where they were collected from.
- Full Text:
- Date Issued: 2013
On the underwater visual census of Western Indian Ocean coral reef fishes
- Authors: Wartenberg, Reece
- Date: 2012
- Subjects: Coral reef fishes -- Africa, Southern , Coral reef fishes -- Indian Ocean , Coral reef fishes -- Behavior , Fish communities -- Africa, Southern , Fish communities -- Indian Ocean , Groundfishes -- Africa, Southern , Groundfishes -- Indian Ocean , Groundfishes -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5308 , http://hdl.handle.net/10962/d1005153 , Coral reef fishes -- Africa, Southern , Coral reef fishes -- Indian Ocean , Coral reef fishes -- Behavior , Fish communities -- Africa, Southern , Fish communities -- Indian Ocean , Groundfishes -- Africa, Southern , Groundfishes -- Indian Ocean , Groundfishes -- Behavior
- Description: This study conducted the first high-resolution investigation of the ichthyofaunal assemblages on a high-latitude coral reef in the Western Indian Ocean (WIO). Two-Mile reef, in South Africa, is a large, accessible patch-reef, and was selected as a candidate study area. Although the effect of season in structuring coral reef fish communities is most-often overlooked, the relationship between these fish communities and their habitat structure has been investigated. In South Africa, however, neither of these potential community-level drivers has been explored. As coral reefs worldwide are faced with high levels of usage pressure, nondestructive underwater visual census (UVC) techniques were identified as the most appropriate survey methods. This study had two primary aims that were; (1) to identify the most suitable technique for the UVC of coral reef fishes, and to test variations of the selected technique for appropriateness to implementation in long-term monitoring programs, and (2) to determine if possible changes to ichthyofaunal community structure could be related to trends in season and/or habitat characteristics. A review of the literature indicated that the most appropriate UVC method for surveying epibenthic coral reef fishes is underwater transecting. To compare the traditional slate-based transects to variations that implement digital image technology, slate transects were compared to a first-attempt digital photographic transect technique, and digital videographic transects. Videographic transects produced the most favourable species richness, abundance, and standard deviations of the three techniques. Diversity was not significantly different between transect techniques. The minimum required sample size was lowest for videographic transects (17 replicates), intermediate for photographic transects (27 replicates) and highest for slate transects (37 replicates). Videographic and photographic transects required greater analysis time to generate counts, but required lower observer training time. While videographic transects produced the lowest proportion of species considered unidentifiable, all three transect techniques showed similar functionality to surveying epibenthic coral reef fishes. Videographic transects were therefore identified as the most appropriate UVC technique for this study. Videographic transects at shallow (6 – 14 m), intermediate (14 – 22 m) and deep (22 – 30 m) depths in mid-winter and mid-summer, sampled a total of 41 families consisting of 209 species and 18172 individuals, dominated by pomacentrids in abundance and labrids in richness. The fish assemblages on Two-Mile Reef were found to be similar in composition to lower-latitude WIO reefs. Overall ichthyofaunal abundance and richness was significantly higher in summer than in winter, and was higher at shallow sites than at intermediate and deep sites. A multivariate approach confirmed differences between seasons at shallow depths but not between seasons at intermediate and deep depths. The fish assemblages on Two-Mile Reef can therefore be described as being comprised of four relatively distinct communities: a shallow, winter community; a shallow, summer community; a year-round intermediate community; and a year-round deep community. The distributions of discriminating species indicated that high abundances of the algal-feeding pomacentrids are observed only at shallow and intermediate sites while high abundances of the zooplanktivorous serranid subfamily, the Anthiinae, are observed predominantly at deep sites. Assessment of all measured supplementary variables indicated that of all factor combinations, observed patterns could be ascribed most strongly to depth. Quantification of reef characteristics indicated that as depth increases, habitat complexity decreases, benthic communities shift from dense coral domination to sparse sponge domination, and algal biomass and cover decreases. The ability of the videographic transect technique to detect changes in community structure with season and depth indicates that season and depth should be accounted for in future high-latitude ichtyofaunal surveys, and that the videographic transect technique is suitable for implementation in long-term monitoring programs on coral reefs. The similarity in fish assemblages between Two-Mile Reef and lower latitude regions suggests that the protocol for surveying epibenthic coral reef fishes, resulting from this study, is relevant throughout the continental WIO.
- Full Text:
- Date Issued: 2012
- Authors: Wartenberg, Reece
- Date: 2012
- Subjects: Coral reef fishes -- Africa, Southern , Coral reef fishes -- Indian Ocean , Coral reef fishes -- Behavior , Fish communities -- Africa, Southern , Fish communities -- Indian Ocean , Groundfishes -- Africa, Southern , Groundfishes -- Indian Ocean , Groundfishes -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5308 , http://hdl.handle.net/10962/d1005153 , Coral reef fishes -- Africa, Southern , Coral reef fishes -- Indian Ocean , Coral reef fishes -- Behavior , Fish communities -- Africa, Southern , Fish communities -- Indian Ocean , Groundfishes -- Africa, Southern , Groundfishes -- Indian Ocean , Groundfishes -- Behavior
- Description: This study conducted the first high-resolution investigation of the ichthyofaunal assemblages on a high-latitude coral reef in the Western Indian Ocean (WIO). Two-Mile reef, in South Africa, is a large, accessible patch-reef, and was selected as a candidate study area. Although the effect of season in structuring coral reef fish communities is most-often overlooked, the relationship between these fish communities and their habitat structure has been investigated. In South Africa, however, neither of these potential community-level drivers has been explored. As coral reefs worldwide are faced with high levels of usage pressure, nondestructive underwater visual census (UVC) techniques were identified as the most appropriate survey methods. This study had two primary aims that were; (1) to identify the most suitable technique for the UVC of coral reef fishes, and to test variations of the selected technique for appropriateness to implementation in long-term monitoring programs, and (2) to determine if possible changes to ichthyofaunal community structure could be related to trends in season and/or habitat characteristics. A review of the literature indicated that the most appropriate UVC method for surveying epibenthic coral reef fishes is underwater transecting. To compare the traditional slate-based transects to variations that implement digital image technology, slate transects were compared to a first-attempt digital photographic transect technique, and digital videographic transects. Videographic transects produced the most favourable species richness, abundance, and standard deviations of the three techniques. Diversity was not significantly different between transect techniques. The minimum required sample size was lowest for videographic transects (17 replicates), intermediate for photographic transects (27 replicates) and highest for slate transects (37 replicates). Videographic and photographic transects required greater analysis time to generate counts, but required lower observer training time. While videographic transects produced the lowest proportion of species considered unidentifiable, all three transect techniques showed similar functionality to surveying epibenthic coral reef fishes. Videographic transects were therefore identified as the most appropriate UVC technique for this study. Videographic transects at shallow (6 – 14 m), intermediate (14 – 22 m) and deep (22 – 30 m) depths in mid-winter and mid-summer, sampled a total of 41 families consisting of 209 species and 18172 individuals, dominated by pomacentrids in abundance and labrids in richness. The fish assemblages on Two-Mile Reef were found to be similar in composition to lower-latitude WIO reefs. Overall ichthyofaunal abundance and richness was significantly higher in summer than in winter, and was higher at shallow sites than at intermediate and deep sites. A multivariate approach confirmed differences between seasons at shallow depths but not between seasons at intermediate and deep depths. The fish assemblages on Two-Mile Reef can therefore be described as being comprised of four relatively distinct communities: a shallow, winter community; a shallow, summer community; a year-round intermediate community; and a year-round deep community. The distributions of discriminating species indicated that high abundances of the algal-feeding pomacentrids are observed only at shallow and intermediate sites while high abundances of the zooplanktivorous serranid subfamily, the Anthiinae, are observed predominantly at deep sites. Assessment of all measured supplementary variables indicated that of all factor combinations, observed patterns could be ascribed most strongly to depth. Quantification of reef characteristics indicated that as depth increases, habitat complexity decreases, benthic communities shift from dense coral domination to sparse sponge domination, and algal biomass and cover decreases. The ability of the videographic transect technique to detect changes in community structure with season and depth indicates that season and depth should be accounted for in future high-latitude ichtyofaunal surveys, and that the videographic transect technique is suitable for implementation in long-term monitoring programs on coral reefs. The similarity in fish assemblages between Two-Mile Reef and lower latitude regions suggests that the protocol for surveying epibenthic coral reef fishes, resulting from this study, is relevant throughout the continental WIO.
- Full Text:
- Date Issued: 2012
The life history and fishery assessment of largespot pompano, Trachinotus botla, in northern KwaZulu-Natal, South Africa
- Authors: Parker, Denham
- Date: 2012
- Subjects: Trachinotus -- South Africa -- KwaZulu-Natal , Carangidae -- South Africa -- KwaZulu-Natal , Fishing -- South Africa -- KwaZulu-Natal , Fishery management -- South Africa -- KwaZulu-Natal , Fishing -- Economic aspects -- South Africa -- KwaZulu-Natal , Fish stock assessment -- South Africa -- KwaZulu-Natal , Trachinotus -- Growth -- South Africa -- KwaZulu-Natal , Trachinotus -- Breeding -- South Africa -- KwaZulu-Natal , Trachinotus -- Food -- South Africa -- KwaZulu-Natal , Host-parasite relationships -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5296 , http://hdl.handle.net/10962/d1005141 , Trachinotus -- South Africa -- KwaZulu-Natal , Carangidae -- South Africa -- KwaZulu-Natal , Fishing -- South Africa -- KwaZulu-Natal , Fishery management -- South Africa -- KwaZulu-Natal , Fishing -- Economic aspects -- South Africa -- KwaZulu-Natal , Fish stock assessment -- South Africa -- KwaZulu-Natal , Trachinotus -- Growth -- South Africa -- KwaZulu-Natal , Trachinotus -- Breeding -- South Africa -- KwaZulu-Natal , Trachinotus -- Food -- South Africa -- KwaZulu-Natal , Host-parasite relationships -- South Africa -- KwaZulu-Natal
- Description: Largespot pompano, Trachinotus botla, is a surf zone carangid with a cosmopolitan distribution in subtropical and tropical waters. Within South Africa, the species occurs along the KwaZulu-Natal coastline where it is a popular recreational fishing target. Recreational fishing in southern Africa has developed significantly in recent years, and is now regarded as an industry with huge economic potential. The long-term contribution of South African recreational fisheries to local economies is reliant upon sustainable exploitation through effective management. Trachinotus botla was found to grow rapidly with maximum observed age of six years. Otolith growth zone deposition was validated using edge analysis. Growth was similar between males and females until ~350 mm FL after which females continued to grow while growth in males slowed. The resulting overall sex ratio was slightly female-biased (1 male: 1.3 females). Trachinotus botla matures early with all fish considered to be mature at 290 mm FL, which corresponds to an age of three years. A protracted spawning season was observed ranging from November to February and there was evidence to suggest that T. botla is a serial spawner. Dietary analysis indicates that T. botla is an opportunistic predator with a catholic diet. The opportunistic utilization of “superabundant” prey items is a fundamental characteristic of the species feeding habits. An ontogenetic dietary shift was observed at approximately 300 mm FL that was linked to a shift in habitat preference. This thesis provided the first evidence that infection by the tongue-replacing isopod, Cymothoa borbonica, reduces the growth rate of wild host fish populations despite not affecting the diet, feeding habits and feeding frequency of their hosts. These results also highlighted the inadequacy of condition factor as a proxy for quantifying the effects of cymothoids on their hosts, and identified the need to incorporate host age when assessing the effects of parasite infection. Information on the life-cycle of C. borbonica, including estimates of the hypothesized “infectious” period and its longevity were obtained through analysis of parasite infection patterns as a function of host age and length. An assessment of the T. botla shore fishery of KwaZulu-Natal using historical catch data revealed that the fishery is stable. Productivity of the T. botla fishery increased towards the north of KwaZulu-Natal. Distinct seasonal variations in the T. botla fishery were also noted with catches peaking in summer months and lowest during winter. A per-recruit assessment revealed that the species is currently underexploited (SBR = 62% of pristine levels), and fishing mortality rate could be doubled before reaching the spawner biomass-per recruit target reference point of FSB₄₀. A combination of the life history characteristics of species, the nature of the recreational shore fishery together with the current management regulation of 5 fish person⁻¹ day⁻¹ has ensured the sustainable utilization of the T. botla resource in KwaZulu-Natal.
- Full Text:
- Date Issued: 2012
- Authors: Parker, Denham
- Date: 2012
- Subjects: Trachinotus -- South Africa -- KwaZulu-Natal , Carangidae -- South Africa -- KwaZulu-Natal , Fishing -- South Africa -- KwaZulu-Natal , Fishery management -- South Africa -- KwaZulu-Natal , Fishing -- Economic aspects -- South Africa -- KwaZulu-Natal , Fish stock assessment -- South Africa -- KwaZulu-Natal , Trachinotus -- Growth -- South Africa -- KwaZulu-Natal , Trachinotus -- Breeding -- South Africa -- KwaZulu-Natal , Trachinotus -- Food -- South Africa -- KwaZulu-Natal , Host-parasite relationships -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5296 , http://hdl.handle.net/10962/d1005141 , Trachinotus -- South Africa -- KwaZulu-Natal , Carangidae -- South Africa -- KwaZulu-Natal , Fishing -- South Africa -- KwaZulu-Natal , Fishery management -- South Africa -- KwaZulu-Natal , Fishing -- Economic aspects -- South Africa -- KwaZulu-Natal , Fish stock assessment -- South Africa -- KwaZulu-Natal , Trachinotus -- Growth -- South Africa -- KwaZulu-Natal , Trachinotus -- Breeding -- South Africa -- KwaZulu-Natal , Trachinotus -- Food -- South Africa -- KwaZulu-Natal , Host-parasite relationships -- South Africa -- KwaZulu-Natal
- Description: Largespot pompano, Trachinotus botla, is a surf zone carangid with a cosmopolitan distribution in subtropical and tropical waters. Within South Africa, the species occurs along the KwaZulu-Natal coastline where it is a popular recreational fishing target. Recreational fishing in southern Africa has developed significantly in recent years, and is now regarded as an industry with huge economic potential. The long-term contribution of South African recreational fisheries to local economies is reliant upon sustainable exploitation through effective management. Trachinotus botla was found to grow rapidly with maximum observed age of six years. Otolith growth zone deposition was validated using edge analysis. Growth was similar between males and females until ~350 mm FL after which females continued to grow while growth in males slowed. The resulting overall sex ratio was slightly female-biased (1 male: 1.3 females). Trachinotus botla matures early with all fish considered to be mature at 290 mm FL, which corresponds to an age of three years. A protracted spawning season was observed ranging from November to February and there was evidence to suggest that T. botla is a serial spawner. Dietary analysis indicates that T. botla is an opportunistic predator with a catholic diet. The opportunistic utilization of “superabundant” prey items is a fundamental characteristic of the species feeding habits. An ontogenetic dietary shift was observed at approximately 300 mm FL that was linked to a shift in habitat preference. This thesis provided the first evidence that infection by the tongue-replacing isopod, Cymothoa borbonica, reduces the growth rate of wild host fish populations despite not affecting the diet, feeding habits and feeding frequency of their hosts. These results also highlighted the inadequacy of condition factor as a proxy for quantifying the effects of cymothoids on their hosts, and identified the need to incorporate host age when assessing the effects of parasite infection. Information on the life-cycle of C. borbonica, including estimates of the hypothesized “infectious” period and its longevity were obtained through analysis of parasite infection patterns as a function of host age and length. An assessment of the T. botla shore fishery of KwaZulu-Natal using historical catch data revealed that the fishery is stable. Productivity of the T. botla fishery increased towards the north of KwaZulu-Natal. Distinct seasonal variations in the T. botla fishery were also noted with catches peaking in summer months and lowest during winter. A per-recruit assessment revealed that the species is currently underexploited (SBR = 62% of pristine levels), and fishing mortality rate could be doubled before reaching the spawner biomass-per recruit target reference point of FSB₄₀. A combination of the life history characteristics of species, the nature of the recreational shore fishery together with the current management regulation of 5 fish person⁻¹ day⁻¹ has ensured the sustainable utilization of the T. botla resource in KwaZulu-Natal.
- Full Text:
- Date Issued: 2012
Videographic analysis of the Coelacanth, Latimeria Chalumnae, and associated habitats in the Isimangaliso Wetland Park, KwaZulu-Natal, South Africa
- Thornycroft, Rosanne Elizabeth
- Authors: Thornycroft, Rosanne Elizabeth
- Date: 2012
- Subjects: Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5333 , http://hdl.handle.net/10962/d1005179 , Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Description: Videography is a valuable tool in biological and ecological studies. Using video footage obtained during previous coelacanth surveys, this thesis investigated coelacanths and their associated habitats in the submarine canyons of iSimangaliso Wetland Park, South Africa. This thesis aimed to (1) describe the biological habitats within the submarine canyons, (2) determine coelacanth distribution within these habitats, and (3) assess the use of computer-aided identification to successfully identify individual coelacanths. Seven different habitat types were noted with the most distinctive being the canyon margins that consisted of dense agglomerations of gorgonians, wire and whip corals, and sponges. Results suggested that although substratum type has a great influence on invertebrate community structure in the canyons, depth is the principal factor. Coelacanths were associated with cave habitats within the steep rocky canyon walls. Habitat analyses allowed predictive classification tree models to be constructed. Depth, underlying percentage of rock, and percentage cover of gorgonians and sponges were the most important variables for determining coelacanth presence and absence. The overall correct classification rate for the model was estimated at 96.6%, correctly predicting coelacanth absence (> 99%) better than presence (60%). Because coelacanths have a unique spot pattern it was possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator the software accurately identified between 56 and 92% of the individuals. Identification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs. Each of the sections presented in this thesis represent a possible step towards analysing coelacanth-related habitats, locating and then analysing new habitats. Steps include first locating a population and then performing a habitat analysis. Coelacanth location within the different habitats can then be determined allowing the development of predictive models to potentially identify possible locations of new populations. The final step is to identify individual fish within the population for assessing demographic parameters and population monitoring.
- Full Text:
- Date Issued: 2012
- Authors: Thornycroft, Rosanne Elizabeth
- Date: 2012
- Subjects: Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5333 , http://hdl.handle.net/10962/d1005179 , Isimangaliso Wetland Park , Coelacanth , Coelacanth -- South Africa -- KwaZulu-Natal , Habitat (Ecology) , Coelacanth -- Behavior -- South Africa -- KwaZulu-Natal , Coelacanth -- Habitat -- South Africa -- KwaZulu-Natal
- Description: Videography is a valuable tool in biological and ecological studies. Using video footage obtained during previous coelacanth surveys, this thesis investigated coelacanths and their associated habitats in the submarine canyons of iSimangaliso Wetland Park, South Africa. This thesis aimed to (1) describe the biological habitats within the submarine canyons, (2) determine coelacanth distribution within these habitats, and (3) assess the use of computer-aided identification to successfully identify individual coelacanths. Seven different habitat types were noted with the most distinctive being the canyon margins that consisted of dense agglomerations of gorgonians, wire and whip corals, and sponges. Results suggested that although substratum type has a great influence on invertebrate community structure in the canyons, depth is the principal factor. Coelacanths were associated with cave habitats within the steep rocky canyon walls. Habitat analyses allowed predictive classification tree models to be constructed. Depth, underlying percentage of rock, and percentage cover of gorgonians and sponges were the most important variables for determining coelacanth presence and absence. The overall correct classification rate for the model was estimated at 96.6%, correctly predicting coelacanth absence (> 99%) better than presence (60%). Because coelacanths have a unique spot pattern it was possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator the software accurately identified between 56 and 92% of the individuals. Identification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs. Each of the sections presented in this thesis represent a possible step towards analysing coelacanth-related habitats, locating and then analysing new habitats. Steps include first locating a population and then performing a habitat analysis. Coelacanth location within the different habitats can then be determined allowing the development of predictive models to potentially identify possible locations of new populations. The final step is to identify individual fish within the population for assessing demographic parameters and population monitoring.
- Full Text:
- Date Issued: 2012
The conservation and management of freshwater fishes in the Greater Addo Elephant National Park
- Authors: Traas, Graham Ronald Louis
- Date: 2009
- Subjects: Addo Elephant National Park (South Africa) , Freshwater fishes -- South Africa -- Eastern Cape , Fishery conservation -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Estuarine fishes -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5247 , http://hdl.handle.net/10962/d1005090 , Addo Elephant National Park (South Africa) , Freshwater fishes -- South Africa -- Eastern Cape , Fishery conservation -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Estuarine fishes -- South Africa -- Eastern Cape
- Description: Freshwater fish are the most imperilled vertebrate group with a high projected extinction rate. In general, the world's freshwater ichthyofauna is in a poor state and is threatened by habitat destruction, pollution, the effects of alien species, damming, water extraction and overfishing. Within South Africa, legislation supporting the conservation of aquatic habitats and its associated fauna is strong, but there is a lack of capacity and poor co-ordination between agencies responsible for the conservation and management. The Greater Addo Elephant National Park (GAENP) includes the upper catchments of five of the Sundays River tributaries. Since the optimal method of conserving freshwater aquatic biota is to conserve the headwaters of either the river or its tributaries, there is an opportunity to conserve the native ichthyofauna of the Sundays River system. The principal objective of this thesis was, therefore, to provide information pertinent to the conservation and management of the fishes in the Sundays River system. Sixteen species of freshwater and estuarine fish were sampled, of which eight were alien. Species composition in each of the rivers, with the exception of the Kabouga River, had changed significantly from previous studies. The distribution ranges of several indigenous species had reduced, while those of some alien species was increased. Two species not previously recorded, Labeo capensis and Gambusia affinis, were sampled. Alien species were sampled from all the tributaries. Diversity indices and community assemblage models were identified as approaches for monitoring the ichthyofauna in this species depauperate system. Diversity indices were not recommended for use as a monitoring tool, as they provided insufficient detail on community composition and structure. A modified depletion estimator was applied to multiple pass electrofishing data to determine the effects of various physico-chemical variables on the absolute abundance of Pseudobarbus afer, an endangered species. Pseudobarbus afer density was found to be positively correlated to the presence of boulders. Where P. afer were present, they were abundant. Of the total sampled catch, 21.8% was comprised of alien fishes. Clarias gariepinus was the most successful invader having penetrated all but one of the tributaries. Micropterus salmoides changed the species composition of the Wit River significantly through predation, and is potentially the most dangerous of the alien species in the Sundays River system, capable of extirpating a population of P. afer in as little as three days. Only one man-made barrier to the upstream migration of alien fishes was present on the tributaries, and several addition barriers are required to safeguard the populations of indigenous fish in the headwaters of these tributaries. Several management and conservation tools are presented and discussed, including river rehabilitation, translocation, eradication of alien species, erection of barrier weirs and captive breeding programmes. Public awareness and education is stressed because without support from the communities surrounding the GAENP, management plans for conservation of the indigenous ichthyofauna will, in all likelihood, fail.
- Full Text:
- Date Issued: 2009
- Authors: Traas, Graham Ronald Louis
- Date: 2009
- Subjects: Addo Elephant National Park (South Africa) , Freshwater fishes -- South Africa -- Eastern Cape , Fishery conservation -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Estuarine fishes -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5247 , http://hdl.handle.net/10962/d1005090 , Addo Elephant National Park (South Africa) , Freshwater fishes -- South Africa -- Eastern Cape , Fishery conservation -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Estuarine fishes -- South Africa -- Eastern Cape
- Description: Freshwater fish are the most imperilled vertebrate group with a high projected extinction rate. In general, the world's freshwater ichthyofauna is in a poor state and is threatened by habitat destruction, pollution, the effects of alien species, damming, water extraction and overfishing. Within South Africa, legislation supporting the conservation of aquatic habitats and its associated fauna is strong, but there is a lack of capacity and poor co-ordination between agencies responsible for the conservation and management. The Greater Addo Elephant National Park (GAENP) includes the upper catchments of five of the Sundays River tributaries. Since the optimal method of conserving freshwater aquatic biota is to conserve the headwaters of either the river or its tributaries, there is an opportunity to conserve the native ichthyofauna of the Sundays River system. The principal objective of this thesis was, therefore, to provide information pertinent to the conservation and management of the fishes in the Sundays River system. Sixteen species of freshwater and estuarine fish were sampled, of which eight were alien. Species composition in each of the rivers, with the exception of the Kabouga River, had changed significantly from previous studies. The distribution ranges of several indigenous species had reduced, while those of some alien species was increased. Two species not previously recorded, Labeo capensis and Gambusia affinis, were sampled. Alien species were sampled from all the tributaries. Diversity indices and community assemblage models were identified as approaches for monitoring the ichthyofauna in this species depauperate system. Diversity indices were not recommended for use as a monitoring tool, as they provided insufficient detail on community composition and structure. A modified depletion estimator was applied to multiple pass electrofishing data to determine the effects of various physico-chemical variables on the absolute abundance of Pseudobarbus afer, an endangered species. Pseudobarbus afer density was found to be positively correlated to the presence of boulders. Where P. afer were present, they were abundant. Of the total sampled catch, 21.8% was comprised of alien fishes. Clarias gariepinus was the most successful invader having penetrated all but one of the tributaries. Micropterus salmoides changed the species composition of the Wit River significantly through predation, and is potentially the most dangerous of the alien species in the Sundays River system, capable of extirpating a population of P. afer in as little as three days. Only one man-made barrier to the upstream migration of alien fishes was present on the tributaries, and several addition barriers are required to safeguard the populations of indigenous fish in the headwaters of these tributaries. Several management and conservation tools are presented and discussed, including river rehabilitation, translocation, eradication of alien species, erection of barrier weirs and captive breeding programmes. Public awareness and education is stressed because without support from the communities surrounding the GAENP, management plans for conservation of the indigenous ichthyofauna will, in all likelihood, fail.
- Full Text:
- Date Issued: 2009
A description of spatial and temporal aspects of the lifecycle of chokka squid Loligo vulgaris reynaudii on the inshore spawning grounds and Agulhas bank off the South Coast of South Africa
- Authors: Olyott, Leonard James Henry
- Date: 2002
- Subjects: Squids -- South Africa , Loliginidae -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5253 , http://hdl.handle.net/10962/d1005096 , Squids -- South Africa , Loliginidae -- South Africa
- Description: The chokka squid, Loligo vulgaris reynaudii, is a commercially important species supporting a large, high-value export fishery for South Africa. This study reviewed its population dynamics and reproductive biology. Biological information collected on biannual research cruises from September 1986 to April 1999 on the Agulhas Bank as well as information from commercial vessels operating in the inshore environment collected between April 1988 and July 1989 and again between June 1999 and May 2000 were analysed. Size ranges of juveniles, subadults and adults were calculated and used to determine seasonal distribution and abundance patterns. Based on Gonadosomatic Indices (GSI) and percentages of mature squid in each month, two peak reproductive seasons in summer and winter were identified although mature squid were present all year round. Seasonal peaks in sex ratio were also apparent with males outnumbering females by up to 4:1 in the peak-breeding season. The size at which squid matured, demonstrated both spatial and temporal patterns. Squid caught in spring matured at a smaller size than squid caught in autumn and at successively smaller sizes from west to east across the Agulhas Bank. Size at maturity was highly variable especially in males where “sneaker males” were evident in both seasons. Length-to-weight linear regression revealed significant differences between maturity stages and between sexes. Females demonstrated steeper length-to-weight regression slopes than males in the peak-breeding seasons. Aspects of squid biology pertinent to fishery management were highlighted as well as potential areas where research should be directed in order to develop future stock assessment models.
- Full Text:
- Date Issued: 2002
- Authors: Olyott, Leonard James Henry
- Date: 2002
- Subjects: Squids -- South Africa , Loliginidae -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5253 , http://hdl.handle.net/10962/d1005096 , Squids -- South Africa , Loliginidae -- South Africa
- Description: The chokka squid, Loligo vulgaris reynaudii, is a commercially important species supporting a large, high-value export fishery for South Africa. This study reviewed its population dynamics and reproductive biology. Biological information collected on biannual research cruises from September 1986 to April 1999 on the Agulhas Bank as well as information from commercial vessels operating in the inshore environment collected between April 1988 and July 1989 and again between June 1999 and May 2000 were analysed. Size ranges of juveniles, subadults and adults were calculated and used to determine seasonal distribution and abundance patterns. Based on Gonadosomatic Indices (GSI) and percentages of mature squid in each month, two peak reproductive seasons in summer and winter were identified although mature squid were present all year round. Seasonal peaks in sex ratio were also apparent with males outnumbering females by up to 4:1 in the peak-breeding season. The size at which squid matured, demonstrated both spatial and temporal patterns. Squid caught in spring matured at a smaller size than squid caught in autumn and at successively smaller sizes from west to east across the Agulhas Bank. Size at maturity was highly variable especially in males where “sneaker males” were evident in both seasons. Length-to-weight linear regression revealed significant differences between maturity stages and between sexes. Females demonstrated steeper length-to-weight regression slopes than males in the peak-breeding seasons. Aspects of squid biology pertinent to fishery management were highlighted as well as potential areas where research should be directed in order to develop future stock assessment models.
- Full Text:
- Date Issued: 2002
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