Transcription factor motif quality assessment requires systematic comparative analysis [version 2; referees: 2 approved]
- Kibet, Caleb K, Machanick, Philip
- Authors: Kibet, Caleb K , Machanick, Philip
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61169 , vital:27987 , http://dx.doi.org/10.12688/f1000research.7408.2
- Description: Transcription factor (TF) binding site prediction remains a challenge in gene regulatory research due to degeneracy and potential variability in binding sites in the genome. Dozens of algorithms designed to learn binding models (motifs) have generated many motifs available in research papers with a subset making it to databases like JASPAR, UniPROBE and Transfac. The presence of many versions of motifs from the various databases for a single TF and the lack of a standardized assessment technique makes it difficult for biologists to make an appropriate choice of binding model and for algorithm developers to benchmark, test and improve on their models. In this study, we review and evaluate the approaches in use, highlight differences and demonstrate the difficulty of defining a standardized motif assessment approach. We review scoring functions, motif length, test data and the type of performance metrics used in prior studies as some of the factors that influence the outcome of a motif assessment. We show that the scoring functions and statistics used in motif assessment influence ranking of motifs in a TF-specific manner. We also show that TF binding specificity can vary by source of genomic binding data. We also demonstrate that information content of a motif is not in isolation a measure of motif quality but is influenced by TF binding behaviour. We conclude that there is a need for an easy-to-use tool that presents all available evidence for a comparative analysis.
- Full Text:
- Date Issued: 2016
- Authors: Kibet, Caleb K , Machanick, Philip
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61169 , vital:27987 , http://dx.doi.org/10.12688/f1000research.7408.2
- Description: Transcription factor (TF) binding site prediction remains a challenge in gene regulatory research due to degeneracy and potential variability in binding sites in the genome. Dozens of algorithms designed to learn binding models (motifs) have generated many motifs available in research papers with a subset making it to databases like JASPAR, UniPROBE and Transfac. The presence of many versions of motifs from the various databases for a single TF and the lack of a standardized assessment technique makes it difficult for biologists to make an appropriate choice of binding model and for algorithm developers to benchmark, test and improve on their models. In this study, we review and evaluate the approaches in use, highlight differences and demonstrate the difficulty of defining a standardized motif assessment approach. We review scoring functions, motif length, test data and the type of performance metrics used in prior studies as some of the factors that influence the outcome of a motif assessment. We show that the scoring functions and statistics used in motif assessment influence ranking of motifs in a TF-specific manner. We also show that TF binding specificity can vary by source of genomic binding data. We also demonstrate that information content of a motif is not in isolation a measure of motif quality but is influenced by TF binding behaviour. We conclude that there is a need for an easy-to-use tool that presents all available evidence for a comparative analysis.
- Full Text:
- Date Issued: 2016
Two in one: cryptic species discovered in biological control agent populations using molecular data and crossbreeding experiments
- Paterson, Iain D, Mangan, Rose, Downie, Douglas A, Coetzee, Julie A, Hill, Martin P, Burke, Ashley M, Downey, Paul O, Henry, Thomas J, Compton, Stephen G
- Authors: Paterson, Iain D , Mangan, Rose , Downie, Douglas A , Coetzee, Julie A , Hill, Martin P , Burke, Ashley M , Downey, Paul O , Henry, Thomas J , Compton, Stephen G
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/424877 , vital:72191 , xlink:href="https://doi.org/10.1002/ece3.2297"
- Description: There are many examples of cryptic species that have been identified through DNA-barcoding or other genetic techniques. There are, however, very few confirmations of cryptic species being reproductively isolated. This study presents one of the few cases of cryptic species that has been confirmed to be reproductively isolated and therefore true species according to the biological species concept. The cryptic species are of special interest because they were discovered within biological control agent populations. Two geographically isolated populations of Eccritotarsus catarinensis (Carvalho) [Hemiptera: Miridae], a biological control agent for the invasive aquatic macrophyte, water hyacinth, Eichhornia crassipes (Mart.) Solms [Pontederiaceae], in South Africa, were sampled from the native range of the species in South America. Morphological characteristics indicated that both populations were the same species according to the current taxonomy, but subsequent DNA analysis and breeding experiments revealed that the two populations are reproductively isolated. Crossbreeding experiments resulted in very few hybrid offspring when individuals were forced to interbreed with individuals of the other population, and no hybrid offspring were recorded when a choice of mate from either population was offered. The data indicate that the two populations are cryptic species that are reproductively incompatible. Subtle but reliable diagnostic characteristics were then identified to distinguish between the two species which would have been considered intraspecific variation without the data from the genetics and interbreeding experiments. These findings suggest that all consignments of biological control agents from allopatric populations should be screened for cryptic species using genetic techniques and that the importation of multiple consignments of the same species for biological control should be conducted with caution.
- Full Text:
- Date Issued: 2016
- Authors: Paterson, Iain D , Mangan, Rose , Downie, Douglas A , Coetzee, Julie A , Hill, Martin P , Burke, Ashley M , Downey, Paul O , Henry, Thomas J , Compton, Stephen G
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/424877 , vital:72191 , xlink:href="https://doi.org/10.1002/ece3.2297"
- Description: There are many examples of cryptic species that have been identified through DNA-barcoding or other genetic techniques. There are, however, very few confirmations of cryptic species being reproductively isolated. This study presents one of the few cases of cryptic species that has been confirmed to be reproductively isolated and therefore true species according to the biological species concept. The cryptic species are of special interest because they were discovered within biological control agent populations. Two geographically isolated populations of Eccritotarsus catarinensis (Carvalho) [Hemiptera: Miridae], a biological control agent for the invasive aquatic macrophyte, water hyacinth, Eichhornia crassipes (Mart.) Solms [Pontederiaceae], in South Africa, were sampled from the native range of the species in South America. Morphological characteristics indicated that both populations were the same species according to the current taxonomy, but subsequent DNA analysis and breeding experiments revealed that the two populations are reproductively isolated. Crossbreeding experiments resulted in very few hybrid offspring when individuals were forced to interbreed with individuals of the other population, and no hybrid offspring were recorded when a choice of mate from either population was offered. The data indicate that the two populations are cryptic species that are reproductively incompatible. Subtle but reliable diagnostic characteristics were then identified to distinguish between the two species which would have been considered intraspecific variation without the data from the genetics and interbreeding experiments. These findings suggest that all consignments of biological control agents from allopatric populations should be screened for cryptic species using genetic techniques and that the importation of multiple consignments of the same species for biological control should be conducted with caution.
- Full Text:
- Date Issued: 2016
Two new species of Xosopsaltria Kirkaldy, 1904, with a key to the species of South African pygmy bladder cicadas (Hemiptera Cicadidae Cicadettinae Tettigomyiini)
- Sanborn, Allen F, Villet, Martin H
- Authors: Sanborn, Allen F , Villet, Martin H
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441274 , vital:73873 , https://mapress.com/zt/article/view/zootaxa.4092.2.3
- Description: Two species, Xosopsaltria brachyptera n. sp. and Xosopsaltria vitripennis n. sp., are described as new. Notes on their biology and a key to the South African pygmy bladder cicadas are also provided.
- Full Text:
- Date Issued: 2016
- Authors: Sanborn, Allen F , Villet, Martin H
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/441274 , vital:73873 , https://mapress.com/zt/article/view/zootaxa.4092.2.3
- Description: Two species, Xosopsaltria brachyptera n. sp. and Xosopsaltria vitripennis n. sp., are described as new. Notes on their biology and a key to the South African pygmy bladder cicadas are also provided.
- Full Text:
- Date Issued: 2016
Unpacking Pandora’s box: Understanding and categorising ecosystem disservices for environmental management and human wellbeing
- Shackleton, Charlie M, Ruwanza, Sheunesu, Sinasson Sanni, Gisele, Bennett, S, De Lacy, Peter, Modipa, Rebone D, Mtati, Nosiseko, Sachikonye, Mwazvita T B, Thondhlana, Gladman
- Authors: Shackleton, Charlie M , Ruwanza, Sheunesu , Sinasson Sanni, Gisele , Bennett, S , De Lacy, Peter , Modipa, Rebone D , Mtati, Nosiseko , Sachikonye, Mwazvita T B , Thondhlana, Gladman
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/182113 , vital:43801 , xlink:href="https://doi.org/10.1007/s10021-015-9952-z"
- Description: Research into the benefits that ecosystems contribute to human wellbeing has multiplied over the last few years following from the seminal contributions of the international Millennium Ecosystem Assessment. In comparison, the fact that some ecosystem goods and services undermine or harm human wellbeing has been seriously overlooked. These negative impacts have become known as ecosystem disservices. The neglect of ecosystem disservices is problematic because investments into the management or reduction of ecosystem disservices may yield better outcomes for human wellbeing, or at a lower investment, than management of ecosystem services. Additionally, management to optimise specific ecosystem services may simultaneously exacerbate associated disservices. We posit that one reason for the neglect of ecosystem disservices from the discourse and policy debates around ecosystems and human wellbeing is because there is no widely accepted definition or typology of ecosystem disservices. Here, we briefly examine current understandings of the term ecosystem disservices and offer a definition and a working typology to help generate debate, policy and management options around ecosystem disservices. We differentiate ecosystem disservices from natural hazards and social hazards, consider some of their inherent properties and then classify them into six categories. A variety of examples are used to illustrate the different types of, and management strategies to, ecosystem disservices.
- Full Text:
- Date Issued: 2016
- Authors: Shackleton, Charlie M , Ruwanza, Sheunesu , Sinasson Sanni, Gisele , Bennett, S , De Lacy, Peter , Modipa, Rebone D , Mtati, Nosiseko , Sachikonye, Mwazvita T B , Thondhlana, Gladman
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/182113 , vital:43801 , xlink:href="https://doi.org/10.1007/s10021-015-9952-z"
- Description: Research into the benefits that ecosystems contribute to human wellbeing has multiplied over the last few years following from the seminal contributions of the international Millennium Ecosystem Assessment. In comparison, the fact that some ecosystem goods and services undermine or harm human wellbeing has been seriously overlooked. These negative impacts have become known as ecosystem disservices. The neglect of ecosystem disservices is problematic because investments into the management or reduction of ecosystem disservices may yield better outcomes for human wellbeing, or at a lower investment, than management of ecosystem services. Additionally, management to optimise specific ecosystem services may simultaneously exacerbate associated disservices. We posit that one reason for the neglect of ecosystem disservices from the discourse and policy debates around ecosystems and human wellbeing is because there is no widely accepted definition or typology of ecosystem disservices. Here, we briefly examine current understandings of the term ecosystem disservices and offer a definition and a working typology to help generate debate, policy and management options around ecosystem disservices. We differentiate ecosystem disservices from natural hazards and social hazards, consider some of their inherent properties and then classify them into six categories. A variety of examples are used to illustrate the different types of, and management strategies to, ecosystem disservices.
- Full Text:
- Date Issued: 2016
Validation of the periodicity of growth zone formation in the otoliths of four fish species from the Upper Zambezi ecoregion, southern Africa
- Taylor, Geraldine C, Peel, Richard A, Weyl, Olaf L F, Hay, Clinton J
- Authors: Taylor, Geraldine C , Peel, Richard A , Weyl, Olaf L F , Hay, Clinton J
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/443414 , vital:74116 , https://hdl.handle.net/10520/EJC196537
- Description: In the Upper Zambezi and Okavango ecoregions, Brycinus lateralis, Hepsetus cuvieri, Schilbe intermedius and Serranochromis macrocephalus are important in subsistence fisheries, while S. intermedius and S. macrocephalus are often caught in commercial catches. Despite their importance, there is little information on their age and growth and age validation. Growth zone deposition rate in otoliths of B. lateralis, H. cuvieri, S. intermedius and S. macrocephalus was validated as annual using edge analysis in this study. Annual deposition of growth zones was corroborated by a fluorochrome marking experiment. Both methods demonstrated that one growth zone was deposited annually. Edge analysis demonstrated that the highest proportion of opaque zones was detected between August and December, most likely as a result of slow growth during lower temperature water during the preceding winter. With growth zone deposition validated as annual, future research should focus on determining the growth, maturity and mortality rates of these species, parameters which are important for their management.
- Full Text:
- Date Issued: 2016
- Authors: Taylor, Geraldine C , Peel, Richard A , Weyl, Olaf L F , Hay, Clinton J
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/443414 , vital:74116 , https://hdl.handle.net/10520/EJC196537
- Description: In the Upper Zambezi and Okavango ecoregions, Brycinus lateralis, Hepsetus cuvieri, Schilbe intermedius and Serranochromis macrocephalus are important in subsistence fisheries, while S. intermedius and S. macrocephalus are often caught in commercial catches. Despite their importance, there is little information on their age and growth and age validation. Growth zone deposition rate in otoliths of B. lateralis, H. cuvieri, S. intermedius and S. macrocephalus was validated as annual using edge analysis in this study. Annual deposition of growth zones was corroborated by a fluorochrome marking experiment. Both methods demonstrated that one growth zone was deposited annually. Edge analysis demonstrated that the highest proportion of opaque zones was detected between August and December, most likely as a result of slow growth during lower temperature water during the preceding winter. With growth zone deposition validated as annual, future research should focus on determining the growth, maturity and mortality rates of these species, parameters which are important for their management.
- Full Text:
- Date Issued: 2016
Was Myriophyllum spicatum L.(Haloragaceae) recently introduced to South Africa from Eurasia?
- Weyl, Philip S R, Thum, R A, Moody, M L, Newman, R M, Coetzee, Julie A
- Authors: Weyl, Philip S R , Thum, R A , Moody, M L , Newman, R M , Coetzee, Julie A
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425463 , vital:72242 , xlink:href="https://doi.org/10.1016/j.aquabot.2015.09.003"
- Description: There is debate over the native or exotic status of Myriophyllum spicatum L. (Haloragaceae) in South Africa, which has important implications for developing and implementing management strategies. The aim of this study was to determine if M. spicatum was recently introduced from Eurasia by reconstructing the genetic relationships between South African and Eurasian M. spicatum using both a nuclear ribosomal (ITS1-5.8S-ITS2-26S) and a chloroplast intron (trnQ-rps16) sequence from 40 populations. For both these DNA markers, the South African populations were distinct from Eurasian populations, but always stemmed from a European origin. The data suggest that South African and European M. spicatum share a common ancestor, however the divergence of both markers are characteristic of a long period of isolation rather than a recent introduction from Europe. The genetic data from this study suggest that M. spicatum has not been introduced recently, but is most likely a native component of the South African flora.
- Full Text:
- Date Issued: 2016
- Authors: Weyl, Philip S R , Thum, R A , Moody, M L , Newman, R M , Coetzee, Julie A
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/425463 , vital:72242 , xlink:href="https://doi.org/10.1016/j.aquabot.2015.09.003"
- Description: There is debate over the native or exotic status of Myriophyllum spicatum L. (Haloragaceae) in South Africa, which has important implications for developing and implementing management strategies. The aim of this study was to determine if M. spicatum was recently introduced from Eurasia by reconstructing the genetic relationships between South African and Eurasian M. spicatum using both a nuclear ribosomal (ITS1-5.8S-ITS2-26S) and a chloroplast intron (trnQ-rps16) sequence from 40 populations. For both these DNA markers, the South African populations were distinct from Eurasian populations, but always stemmed from a European origin. The data suggest that South African and European M. spicatum share a common ancestor, however the divergence of both markers are characteristic of a long period of isolation rather than a recent introduction from Europe. The genetic data from this study suggest that M. spicatum has not been introduced recently, but is most likely a native component of the South African flora.
- Full Text:
- Date Issued: 2016
Why a contextual approach to professional development?
- Leibowitz, B L, Vorster, Jo-Anne E, Ndebele, C
- Authors: Leibowitz, B L , Vorster, Jo-Anne E , Ndebele, C
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61288 , vital:28009 , https://journals.co.za/content/journal/10520/EJC-4ad93ec2a
- Description: One of the peculiarities of the literature on academic professional development with regard to teaching is its a-political nature. It pays insufficient attention to issues of equity, and to how privilege, geographical location, class and ethnicity influence the way that staff in higher education learn to teach. This is surprising, or paradoxical, given the strong world-wide concern for widening participation and student success in higher education. The approaches towards professional academic development have been dominated by literature from the global North, which does not take into account conditions in resource-constrained environments. We contend that literature from these Southern environments enrich the international body of literature. Thus there is a need for scholarly writing on learning to teach in higher education, which takes a specifically social, contextual and relational approach and which considers these within resource-rich as well as resource-constrained environments.
- Full Text:
- Date Issued: 2016
- Authors: Leibowitz, B L , Vorster, Jo-Anne E , Ndebele, C
- Date: 2016
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/10962/61288 , vital:28009 , https://journals.co.za/content/journal/10520/EJC-4ad93ec2a
- Description: One of the peculiarities of the literature on academic professional development with regard to teaching is its a-political nature. It pays insufficient attention to issues of equity, and to how privilege, geographical location, class and ethnicity influence the way that staff in higher education learn to teach. This is surprising, or paradoxical, given the strong world-wide concern for widening participation and student success in higher education. The approaches towards professional academic development have been dominated by literature from the global North, which does not take into account conditions in resource-constrained environments. We contend that literature from these Southern environments enrich the international body of literature. Thus there is a need for scholarly writing on learning to teach in higher education, which takes a specifically social, contextual and relational approach and which considers these within resource-rich as well as resource-constrained environments.
- Full Text:
- Date Issued: 2016
Xenophilia in Muizenberg, South Africa: new potentials for race relations?
- Authors: Owen, Joy
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147972 , vital:38698 , (http://anthrosource.onlinelibrary.wiley.com/hub/journal/10.1111/(ISSN)1548-744X/about/author-guidelines.html)
- Description: Since the advent of democracy in 1994 race relations in South Africa have not improved substantially. The arrival of transmigrants from other African countries has emphasized a wounded South African psyche, as various xenophobic attitudes and attacks attest. However, a lesser known reality is the expression of xenophilia by South African women. In this article I argue that an intimate relationship between a South African coloured woman and a Congolese black man scripts a different potentiality for multiracial relations in the private and public spaces of urban Cape Town, South Africa.
- Full Text:
- Date Issued: 2016
- Authors: Owen, Joy
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147972 , vital:38698 , (http://anthrosource.onlinelibrary.wiley.com/hub/journal/10.1111/(ISSN)1548-744X/about/author-guidelines.html)
- Description: Since the advent of democracy in 1994 race relations in South Africa have not improved substantially. The arrival of transmigrants from other African countries has emphasized a wounded South African psyche, as various xenophobic attitudes and attacks attest. However, a lesser known reality is the expression of xenophilia by South African women. In this article I argue that an intimate relationship between a South African coloured woman and a Congolese black man scripts a different potentiality for multiracial relations in the private and public spaces of urban Cape Town, South Africa.
- Full Text:
- Date Issued: 2016
‘Abagyenda bareeba. Those who Travel, See’: Home, Migration and the Maternal Bond in Doreen Baingana’s Tropical Fish
- Authors: Spencer, Lynda G
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/139017 , vital:37696 , https://doi.org/10.1080/00020184.2016.1182319
- Description: Doreen Baingana’s Tropical Fish explores the migratory experiences of the main narrator-focalizer, Christine Mugisha, as she travels from Uganda to the United States of America. Although the analyses of home, exile, and migration by writers like Edward Said and Paul Tiyambe Zeleza tend to be ungendered; Baingana seems to elaborate on these concerns by reflecting on the gendered experience of travel. As Carole Boyce Davies has argued, the act of travelling and migration opens up new spaces and possibilities for black women writers as they come into contact with multiple places and cultures. In their encounters with migration, black women are able to negotiate and re-negotiate their identities. This article focuses on how Tropical Fish, interrogates complex, contradictory, ambiguous and often conflicted questions of home and migration with their concomitant issues of belonging and alienation/ estrangement and how they are intimately tied to the maternal bond.
- Full Text:
- Date Issued: 2016
- Authors: Spencer, Lynda G
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/139017 , vital:37696 , https://doi.org/10.1080/00020184.2016.1182319
- Description: Doreen Baingana’s Tropical Fish explores the migratory experiences of the main narrator-focalizer, Christine Mugisha, as she travels from Uganda to the United States of America. Although the analyses of home, exile, and migration by writers like Edward Said and Paul Tiyambe Zeleza tend to be ungendered; Baingana seems to elaborate on these concerns by reflecting on the gendered experience of travel. As Carole Boyce Davies has argued, the act of travelling and migration opens up new spaces and possibilities for black women writers as they come into contact with multiple places and cultures. In their encounters with migration, black women are able to negotiate and re-negotiate their identities. This article focuses on how Tropical Fish, interrogates complex, contradictory, ambiguous and often conflicted questions of home and migration with their concomitant issues of belonging and alienation/ estrangement and how they are intimately tied to the maternal bond.
- Full Text:
- Date Issued: 2016
“A Step Towards Silence”: Samuel Beckett’s The Unnamable and the Problem of Following the Stranger
- Authors: Marais, Mike
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144205 , vital:38320 , DOI: 10.1080/02564718.2016.1249617
- Description: In this article, I argue that Samuel Beckett’s The Unnamable evinces the kind of aesthetic ambivalence that Theodor Adorno, in Aesthetic Theory, ascribes to the artwork’s location both in and outside of society. By tracing the metaphors used in the narrator’s depiction of the act of narration, I demonstrate that this novel self-reflexively articulates and meditates on its ambivalent position in society. Thereafter, I relate the work’s suspicion of its medium, and therefore its estrangement from itself, to its critique of community’s norms of recognition, which are embedded in language. Finally, I reflect on the potential effect of the text’s aesthetic ambivalence on the reader.
- Full Text:
- Date Issued: 2016
- Authors: Marais, Mike
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144205 , vital:38320 , DOI: 10.1080/02564718.2016.1249617
- Description: In this article, I argue that Samuel Beckett’s The Unnamable evinces the kind of aesthetic ambivalence that Theodor Adorno, in Aesthetic Theory, ascribes to the artwork’s location both in and outside of society. By tracing the metaphors used in the narrator’s depiction of the act of narration, I demonstrate that this novel self-reflexively articulates and meditates on its ambivalent position in society. Thereafter, I relate the work’s suspicion of its medium, and therefore its estrangement from itself, to its critique of community’s norms of recognition, which are embedded in language. Finally, I reflect on the potential effect of the text’s aesthetic ambivalence on the reader.
- Full Text:
- Date Issued: 2016
“Girls need to behave like girls you know”: the complexities of applying a gender justice goal within sexuality education in South African schools
- Macleod, Catriona I, Ngabaza, Sisa, Shefer, Tamara
- Authors: Macleod, Catriona I , Ngabaza, Sisa , Shefer, Tamara
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444342 , vital:74220 , xlink:href="https://doi.org/10.1016/j.rhm.2016.11.007"
- Description: Sexuality education, as a component within the Life Orientation (LO) programme in South African schools, is intended to provide young people with knowledge and skills to make informed choices about their sexuality, their own health and that of others. Key to the programme are outcomes relating to power, power relations and gender. In this paper, we apply a critical gender lens to explore the ways in which the teaching of sexuality education engages with larger goals of gender justice. The paper draws from a number of ethnographic studies conducted at 12 South African schools. We focus here on the data collected from focus group discussions with learners, and semi-structured interviews with individual learners, principals and Life Orientation (LO) teachers. The paper highlights the complexities of having gender justice as a central goal of LO sexuality education. Teaching sexuality education is reported to contradict dominant community values and norms. Although some principals and school authorities support gender equity and problematize hegemonic masculinities, learners experience sexuality education as upholding normative gender roles and male power, rather than challenging it. Teachers rely heavily on cautionary messages that put more responsibility for reproductive health on female learners, and use didactic, authoritative pedagogical techniques, which do not acknowledge young people’s experience nor facilitate their sexual agency. These complexities need to be foregrounded and worked with systematically if the goal of gender justice within LO is to be realised.
- Full Text:
- Date Issued: 2016
- Authors: Macleod, Catriona I , Ngabaza, Sisa , Shefer, Tamara
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444342 , vital:74220 , xlink:href="https://doi.org/10.1016/j.rhm.2016.11.007"
- Description: Sexuality education, as a component within the Life Orientation (LO) programme in South African schools, is intended to provide young people with knowledge and skills to make informed choices about their sexuality, their own health and that of others. Key to the programme are outcomes relating to power, power relations and gender. In this paper, we apply a critical gender lens to explore the ways in which the teaching of sexuality education engages with larger goals of gender justice. The paper draws from a number of ethnographic studies conducted at 12 South African schools. We focus here on the data collected from focus group discussions with learners, and semi-structured interviews with individual learners, principals and Life Orientation (LO) teachers. The paper highlights the complexities of having gender justice as a central goal of LO sexuality education. Teaching sexuality education is reported to contradict dominant community values and norms. Although some principals and school authorities support gender equity and problematize hegemonic masculinities, learners experience sexuality education as upholding normative gender roles and male power, rather than challenging it. Teachers rely heavily on cautionary messages that put more responsibility for reproductive health on female learners, and use didactic, authoritative pedagogical techniques, which do not acknowledge young people’s experience nor facilitate their sexual agency. These complexities need to be foregrounded and worked with systematically if the goal of gender justice within LO is to be realised.
- Full Text:
- Date Issued: 2016
“Turn on” fluorescence enhancement of Zn octacarboxyphthaloyanine-graphene oxide conjugates by hydrogen peroxide
- Shumba, Munyaradzi, Mashazi, Philani N, Nyokong, Tebello
- Authors: Shumba, Munyaradzi , Mashazi, Philani N , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/190438 , vital:44994 , xlink:href="https://doi.org/10.1016/j.jlumin.2015.11.001"
- Description: Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates were characterized by absorption spectroscopy, transmission electron microscopy, fluorescence spectroscopy, X-ray diffraction, thermo gravimetric analysis and X-ray photon spectroscopy. The presence of reduced graphene oxide or graphene oxide resulted in the quenching (turn on) of Zn octacarboxy phthalocyanine fluorescence which can be explained by photoinduced electron transfer. Zn octacarboxy phthalocyaninereduced graphene oxide or graphene oxide conjugates “turned on” fluorescence showed a linear response to hydrogen peroxide hence their potential to be used as sensors. The nanoprobe developed showed high selectivity towards hydrogen peroxide in the presence of physiological interferences.
- Full Text:
- Date Issued: 2016
- Authors: Shumba, Munyaradzi , Mashazi, Philani N , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/190438 , vital:44994 , xlink:href="https://doi.org/10.1016/j.jlumin.2015.11.001"
- Description: Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates were characterized by absorption spectroscopy, transmission electron microscopy, fluorescence spectroscopy, X-ray diffraction, thermo gravimetric analysis and X-ray photon spectroscopy. The presence of reduced graphene oxide or graphene oxide resulted in the quenching (turn on) of Zn octacarboxy phthalocyanine fluorescence which can be explained by photoinduced electron transfer. Zn octacarboxy phthalocyaninereduced graphene oxide or graphene oxide conjugates “turned on” fluorescence showed a linear response to hydrogen peroxide hence their potential to be used as sensors. The nanoprobe developed showed high selectivity towards hydrogen peroxide in the presence of physiological interferences.
- Full Text:
- Date Issued: 2016
“Turn on” fluorescence enhancement of Zn octacarboxyphthaloyanine-graphene oxide conjugates by hydrogen peroxide
- Shumba, Munyaradzi, Mashazi, Philani N, Nyokong, Tebello
- Authors: Shumba, Munyaradzi , Mashazi, Philani N , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/240875 , vital:50881 , xlink:href="https://doi.org/10.1016/j.jlumin.2015.11.001"
- Description: Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates were characterized by absorption spectroscopy, transmission electron microscopy, fluorescence spectroscopy, X-ray diffraction, thermo gravimetric analysis and X-ray photon spectroscopy. The presence of reduced graphene oxide or graphene oxide resulted in the quenching (turn on) of Zn octacarboxy phthalocyanine fluorescence which can be explained by photoinduced electron transfer. Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates “turned on” fluorescence showed a linear response to hydrogen peroxide hence their potential to be used as sensors. The nanoprobe developed showed high selectivity towards hydrogen peroxide in the presence of physiological interferences.
- Full Text:
- Date Issued: 2016
- Authors: Shumba, Munyaradzi , Mashazi, Philani N , Nyokong, Tebello
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/240875 , vital:50881 , xlink:href="https://doi.org/10.1016/j.jlumin.2015.11.001"
- Description: Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates were characterized by absorption spectroscopy, transmission electron microscopy, fluorescence spectroscopy, X-ray diffraction, thermo gravimetric analysis and X-ray photon spectroscopy. The presence of reduced graphene oxide or graphene oxide resulted in the quenching (turn on) of Zn octacarboxy phthalocyanine fluorescence which can be explained by photoinduced electron transfer. Zn octacarboxy phthalocyanine-reduced graphene oxide or graphene oxide conjugates “turned on” fluorescence showed a linear response to hydrogen peroxide hence their potential to be used as sensors. The nanoprobe developed showed high selectivity towards hydrogen peroxide in the presence of physiological interferences.
- Full Text:
- Date Issued: 2016
'Meaningful engagement’: Towards a language rights paradigm for effective language policy implementation
- Docrat, Zakeera, Kaschula, Russell H
- Authors: Docrat, Zakeera , Kaschula, Russell H
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/174812 , vital:42512 , https://doi.org/10.1080/02572117.2015.1056455
- Description: This article aims to develop the concept of ‘meaningful engagement’ in terms of the contemporary language policy implementation framework in South Africa. By exploring the current language policies, implementation and the current lack of effectiveness, the authors offer a new implementation focus drawn from the legal concept of ‘meaningful engagement’. ‘Meaningful engagement’ is a concept within the socio-economic rights sphere. This article expands and advances the concept within a language policy framework. Against the enabling legislative environment created by the Use of Official Languages Act 12 of 2012 and the overarching Constitutional framework which embeds the rights of all official languages, ‘meaningful engagement’ is developed and applied to selected language policies and practices.
- Full Text:
- Date Issued: 2015
- Authors: Docrat, Zakeera , Kaschula, Russell H
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/174812 , vital:42512 , https://doi.org/10.1080/02572117.2015.1056455
- Description: This article aims to develop the concept of ‘meaningful engagement’ in terms of the contemporary language policy implementation framework in South Africa. By exploring the current language policies, implementation and the current lack of effectiveness, the authors offer a new implementation focus drawn from the legal concept of ‘meaningful engagement’. ‘Meaningful engagement’ is a concept within the socio-economic rights sphere. This article expands and advances the concept within a language policy framework. Against the enabling legislative environment created by the Use of Official Languages Act 12 of 2012 and the overarching Constitutional framework which embeds the rights of all official languages, ‘meaningful engagement’ is developed and applied to selected language policies and practices.
- Full Text:
- Date Issued: 2015
Utilizing gesture recognition and Ethernet AVB for distributed surround sound control
- Hedges, Mitchell, Foss, Richard
- Authors: Hedges, Mitchell , Foss, Richard
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426816 , vital:72393 , https://www.aes.org/e-lib/online/browse.cfm?elib=17540
- Description: Gesture recognition has become a preferred approach to the control of various systems. This allows users of the system to interact without having to use any controls or equipment. This paper investigates the use of gesture recognition in order to select and transport audio tracks over an Ethernet AVB network to speaker endpoints. The research uses equipment that is commercially available and relatively cost efficient. The endpoints receive audio samples that are encapsulated within network packets and processes them. The audio tracks are mixed at the endpoints according to gain ratios that will change and be different for each endpoint.
- Full Text:
- Date Issued: 2014
- Authors: Hedges, Mitchell , Foss, Richard
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426816 , vital:72393 , https://www.aes.org/e-lib/online/browse.cfm?elib=17540
- Description: Gesture recognition has become a preferred approach to the control of various systems. This allows users of the system to interact without having to use any controls or equipment. This paper investigates the use of gesture recognition in order to select and transport audio tracks over an Ethernet AVB network to speaker endpoints. The research uses equipment that is commercially available and relatively cost efficient. The endpoints receive audio samples that are encapsulated within network packets and processes them. The audio tracks are mixed at the endpoints according to gain ratios that will change and be different for each endpoint.
- Full Text:
- Date Issued: 2014
A Review of Arterial Stiffness and HIV Infection in Adult Africans
- Awotedu, Kofoworola Olajire, Iputo, Jehu
- Authors: Awotedu, Kofoworola Olajire , Iputo, Jehu
- Date: 09-06-2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/3484 , vital:43615 , https://www.hilarispublisher.com/open-access/a-review-of-arterial-stiffness-and-hiv-infection-in-adult-africans-2167-1095-1000221.pdf
- Description: Aim: To review the impact of the human immunodeficiency virus and antiretroviral therapy on the vasculature. Objectives: This review seeks to identify the burden which the human immunodeficiency virus and antiretroviral therapy have on the vasculature. Method: Medline/PubMed and Google scholar were searched. There were over 100 publications reviewed. Some people who worked in similar fields were also contacted. The present review summarized current understanding of Human immunodeficiency virus, antiretroviral therapy and effect on the vasculature such as arterial stiffness. Atherosclerosis, endothelial dysfunction, the strengths and weaknesses of current testing strategies, and their potential applications in clinical research and patient care. The association of inflammatory biomarkers, blood pressure and ageing with arterial stiffness were also reviewed. Conclusion: Available literature shows that HIV and antiretroviral agents have a great impact on the vasculature and its progression.
- Full Text:
- Date Issued: 09-06-2016
- Authors: Awotedu, Kofoworola Olajire , Iputo, Jehu
- Date: 09-06-2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/3484 , vital:43615 , https://www.hilarispublisher.com/open-access/a-review-of-arterial-stiffness-and-hiv-infection-in-adult-africans-2167-1095-1000221.pdf
- Description: Aim: To review the impact of the human immunodeficiency virus and antiretroviral therapy on the vasculature. Objectives: This review seeks to identify the burden which the human immunodeficiency virus and antiretroviral therapy have on the vasculature. Method: Medline/PubMed and Google scholar were searched. There were over 100 publications reviewed. Some people who worked in similar fields were also contacted. The present review summarized current understanding of Human immunodeficiency virus, antiretroviral therapy and effect on the vasculature such as arterial stiffness. Atherosclerosis, endothelial dysfunction, the strengths and weaknesses of current testing strategies, and their potential applications in clinical research and patient care. The association of inflammatory biomarkers, blood pressure and ageing with arterial stiffness were also reviewed. Conclusion: Available literature shows that HIV and antiretroviral agents have a great impact on the vasculature and its progression.
- Full Text:
- Date Issued: 09-06-2016