Density-dependent effects on body size, Philopatry, and dispersal in the Damaraland mole-rat (Fukomys damarensis)
- Authors: Finn, Kyle T
- Date: 2017
- Subjects: Fukomys damarensis , Fukomys damarensis -- Reproduction , Fukomys damarensis -- Growth , Rodents -- Reproduction -- South Africa -- Northern Cape , Rodents -- Growth -- South Africa -- Northern Cape , Rodent populations -- South Africa -- Northern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/50495 , vital:25993
- Description: Population density may exert changes in a variety of behavioural and physiological characters in animals. However, the effects of density-dependence and dispersal are poorly studied in subterranean rodents due to the difficulties involved in observing such effects in wild populations. Using the cooperative breeding Damaraland mole-rat (Fukomys damarensis) as a model species, the effects of population density on body size, growth rates, group size, recruitment, philopatry and dispersal were investigated at two sites (one with low density and one with high density) in the Northern Cape of South Africa. Group size, litter size and the probability of recapture were independent of population density. However, individual body size, recruitment, dispersal rate and dispersal distance were density-dependent. Individuals were significantly larger, juveniles exhibited a significantly higher growth rate, and juvenile recruitment was significantly greater when population density was low. At higher densities, significantly more individuals were lost between capture events which may be indicative of increased rates of dispersal. Mean dispersal distances in mole-rats were reduced at higher densities and increased at lower densities. While both sexes dispersed equally, males were significantly more likely to join an established colony and females created new burrow systems. In addition, four times as many single females were found when population density was low. The apparent differences in the study populations may be attributed to variable annual rainfall or food availability. The greater annual rainfall at the high-density site may provide better habitat conditions and therefore result in an increase in the population density and an increased dispersal rate due to the relaxed ecological constraints such as reduced energetic costs to burrowing. However, the larger body size found at the low-density site may indicate that the available food at that location is of better quality. This study revealed that mole-rats were able to disperse over 1km and therefore a much larger study area would be required in capture-mark-recapture studies to ensure the recapture of the majority of dispersers. Lastly, a surprising find of this study was that females may survive a solitary existence for over two years while awaiting the arrival of a mate.
- Full Text:
- Date Issued: 2017
- Authors: Finn, Kyle T
- Date: 2017
- Subjects: Fukomys damarensis , Fukomys damarensis -- Reproduction , Fukomys damarensis -- Growth , Rodents -- Reproduction -- South Africa -- Northern Cape , Rodents -- Growth -- South Africa -- Northern Cape , Rodent populations -- South Africa -- Northern Cape
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/50495 , vital:25993
- Description: Population density may exert changes in a variety of behavioural and physiological characters in animals. However, the effects of density-dependence and dispersal are poorly studied in subterranean rodents due to the difficulties involved in observing such effects in wild populations. Using the cooperative breeding Damaraland mole-rat (Fukomys damarensis) as a model species, the effects of population density on body size, growth rates, group size, recruitment, philopatry and dispersal were investigated at two sites (one with low density and one with high density) in the Northern Cape of South Africa. Group size, litter size and the probability of recapture were independent of population density. However, individual body size, recruitment, dispersal rate and dispersal distance were density-dependent. Individuals were significantly larger, juveniles exhibited a significantly higher growth rate, and juvenile recruitment was significantly greater when population density was low. At higher densities, significantly more individuals were lost between capture events which may be indicative of increased rates of dispersal. Mean dispersal distances in mole-rats were reduced at higher densities and increased at lower densities. While both sexes dispersed equally, males were significantly more likely to join an established colony and females created new burrow systems. In addition, four times as many single females were found when population density was low. The apparent differences in the study populations may be attributed to variable annual rainfall or food availability. The greater annual rainfall at the high-density site may provide better habitat conditions and therefore result in an increase in the population density and an increased dispersal rate due to the relaxed ecological constraints such as reduced energetic costs to burrowing. However, the larger body size found at the low-density site may indicate that the available food at that location is of better quality. This study revealed that mole-rats were able to disperse over 1km and therefore a much larger study area would be required in capture-mark-recapture studies to ensure the recapture of the majority of dispersers. Lastly, a surprising find of this study was that females may survive a solitary existence for over two years while awaiting the arrival of a mate.
- Full Text:
- Date Issued: 2017
Evidence for a biological control-induced regime shift between floating and submerged invasive plant dominance in South Africa
- Authors: Strange, Emily Frances
- Date: 2017
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/32448 , vital:24044
- Description: South Africa has a long history battling the establishment and spread of invasive floating macrophytes. The negative consequences of these are costly both economically and ecologically. They form dense mats on the water's surface that deplete resources such as light and oxygen to the submerged community, which creates anoxic conditions, reduces biodiversity and limits access to freshwater. The past thirty years of South African invasive plant research and the implementation of nationwide biological control programmes has led to widespread control of these species in many degraded systems. Such initiatives are aimed at restoring access to potable freshwater and increasing native biodiversity. However, in recent years, where there has been a decline in floating invasive plant populations, an increase in the establishment and spread of submerged invasive plant species has been observed. Species such as Brazilian waterweed (Egeria densa (Planch.) (Hydrocharitaceae)) and Eurasian watermilfoil (Myriophyllum spicatum (L.) (Haloragaceae)) have been recorded in South African freshwater systems, posing significant threats to aquatic ecosystems. This thesis proposes that the biological control of floating invasive plants, which occurs in numerous dams and rivers nationwide, is the catalyst of a regime shift from floating invasive to submerged invasive plant dominance. Regime shifts are large and often sudden changes in the key structure and functioning of ecosystems, and studies into their occurrence and driving mechanisms broadens understanding of community structures and can guide effective resource management. In order to explore the existence of this new regime shift, a multi-platform approach using controlled experiments and ecological modelling techniques was employed. A model system was created consisting of a floating invasive (Pistia stratiotes L. (Araceae)), a submerged invasive (E. densa) and an ecologically analogous submerged native plant species (Lagarosiphon major (Ridl.) Moss (Hydrocharitaceae)). A suite of experiments was conducted to explore the interactions between the floating and submerged plants under varying regimes of floating plant biological control and levels of nutrient loading. These experiments revealed a competitive advantage of the invasive E. densa over the native L. major that increased by 86% under heavy nutrient loading. The relative growth rate and accumulated biomass of E. densa was significantly higher for plants grown in the presence of biologically controlled P. stratiotes (compared to insect free plants). This demonstrates a high capacity for the invasive E. densa to capitalise on resources made newly available through the biological control of the floating plants. In contrast, the native L. major fared poorly when grown in the presence of the floating P. stratiotes, regardless of applied biological control measures. The experimental observations were then used to parameterise a mathematical model, built to provide a holistic understanding of the individually assessed interactions which work together as the driving mechanisms underpinning the newly identified regime shift. This thesis utilised a multi-platform approach to build the first body of evidence in support of a newly recognised regime shift between floating invasive and submerged invasive plant dominance, as driven by biological control. The results indicate that a reduction in the nutrient loading of South Africa's freshwater systems will reduce negative impacts of submerged invasive macrophytes, whilst increasing system resilience against future invasion. The evidence presented has the potential to better inform management of South Africa's freshwater systems and highlights the importance of integrating multi-trophic interactions when considering future invasive plant management. This research also opens up a multitude of possibilities for studies into submerged plant invasion mechanisms and resilience of native macrophyte communities in South Africa, and further afield.
- Full Text:
- Date Issued: 2017
- Authors: Strange, Emily Frances
- Date: 2017
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/32448 , vital:24044
- Description: South Africa has a long history battling the establishment and spread of invasive floating macrophytes. The negative consequences of these are costly both economically and ecologically. They form dense mats on the water's surface that deplete resources such as light and oxygen to the submerged community, which creates anoxic conditions, reduces biodiversity and limits access to freshwater. The past thirty years of South African invasive plant research and the implementation of nationwide biological control programmes has led to widespread control of these species in many degraded systems. Such initiatives are aimed at restoring access to potable freshwater and increasing native biodiversity. However, in recent years, where there has been a decline in floating invasive plant populations, an increase in the establishment and spread of submerged invasive plant species has been observed. Species such as Brazilian waterweed (Egeria densa (Planch.) (Hydrocharitaceae)) and Eurasian watermilfoil (Myriophyllum spicatum (L.) (Haloragaceae)) have been recorded in South African freshwater systems, posing significant threats to aquatic ecosystems. This thesis proposes that the biological control of floating invasive plants, which occurs in numerous dams and rivers nationwide, is the catalyst of a regime shift from floating invasive to submerged invasive plant dominance. Regime shifts are large and often sudden changes in the key structure and functioning of ecosystems, and studies into their occurrence and driving mechanisms broadens understanding of community structures and can guide effective resource management. In order to explore the existence of this new regime shift, a multi-platform approach using controlled experiments and ecological modelling techniques was employed. A model system was created consisting of a floating invasive (Pistia stratiotes L. (Araceae)), a submerged invasive (E. densa) and an ecologically analogous submerged native plant species (Lagarosiphon major (Ridl.) Moss (Hydrocharitaceae)). A suite of experiments was conducted to explore the interactions between the floating and submerged plants under varying regimes of floating plant biological control and levels of nutrient loading. These experiments revealed a competitive advantage of the invasive E. densa over the native L. major that increased by 86% under heavy nutrient loading. The relative growth rate and accumulated biomass of E. densa was significantly higher for plants grown in the presence of biologically controlled P. stratiotes (compared to insect free plants). This demonstrates a high capacity for the invasive E. densa to capitalise on resources made newly available through the biological control of the floating plants. In contrast, the native L. major fared poorly when grown in the presence of the floating P. stratiotes, regardless of applied biological control measures. The experimental observations were then used to parameterise a mathematical model, built to provide a holistic understanding of the individually assessed interactions which work together as the driving mechanisms underpinning the newly identified regime shift. This thesis utilised a multi-platform approach to build the first body of evidence in support of a newly recognised regime shift between floating invasive and submerged invasive plant dominance, as driven by biological control. The results indicate that a reduction in the nutrient loading of South Africa's freshwater systems will reduce negative impacts of submerged invasive macrophytes, whilst increasing system resilience against future invasion. The evidence presented has the potential to better inform management of South Africa's freshwater systems and highlights the importance of integrating multi-trophic interactions when considering future invasive plant management. This research also opens up a multitude of possibilities for studies into submerged plant invasion mechanisms and resilience of native macrophyte communities in South Africa, and further afield.
- Full Text:
- Date Issued: 2017
Improving the cold tolerance of false codling moth, thaumatotibia leucotreta, for better performance in a sterile insect release programme
- Authors: Daniel, Claire Ashleigh
- Date: 2017
- Subjects: Cryptophlebia leucotreta -- South Africa , Cryptophlebia leucotreta -- Reproduction -- Effect of temperature on , Cryptophlebia leucotreta -- Biological control -- South Africa , Citrus -- Diseases and pests -- Biological control -- South Africa , Insect pests -- Biological control -- South Africa , Insecticides , Citrus fruit industry -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5271 , vital:20803
- Description: The false codling moth (FCM), Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae) is a major pest of citrus and other important crops in Sub-Saharan Africa. The introduction of a sterile insect technique (SIT) programme for FCM in South Africa has proven to be very effective in the control of FCM. The objective was to flood citrus orchards with large numbers of sterile males resulting in a ratio of at least 10 sterile to 1 wild moth, increasing the probability of a female moth mating with a sterile male. This target is often achieved and the programme is generally successful, however there are some challenges regarding this programme. The mass rearing environment, artificial diet, handling methods and irradiation have an impact on sterile insect quality as environmental differences between the rearing facility and field, influences the insect phenotype and competitiveness. This is evident as wild male moths can theoretically actively fly at a temperature of 12°C and laboratory-reared sterilized moths, due to the radiation treatment, appear unable to fly below 20°C. As a consequence, sterile males are out-competed by wild males during the cooler months of the year. This is detrimental to the SIT programme as FCM do not undergo diapause, meaning they are active during winter and will still reproduce. Therefore, to maximize the effect of the SIT programme, it is vital to increase the flight ability of mass reared sterile males at lower temperatures. Various studies have shown that by adding cryoprotectants to the basic laboratory diets increases the cold tolerance of certain insects and thus may allow them to be mobile at lower temperatures, however it imperative that any chemical used to augment the commercial diet of the insect has no negative effects on the insect physiology and development. To investigate this detail for FCM, five generations of FCM were reared on diets augmented with various known insect cryoprotectants. These augmented FCM were subsequently used in experiments designed to determine firstly, if the cryoprotectants had a positive result on the cold tolerance of the FCM, and secondly, if they had any adverse effects on other physiological aspects such as duration of development. Laboratory trials indicated that the flight ability of male FCM was improved when larvae were reared on diets augmented with trehalose and cholesterol (with an average of 40 % of cholesterol and trehalose augmented males that flew at 15 °C where 0 % of the control flew). Results obtained during the field trials support the laboratory results as there was a significant increase in the number of trehalose augmented moths caught in the field during March and July (winter). Results also showed potential for cholesterol to be used as an additive. Other important findings show that both cholesterol and trehalose have no negative impacts on developmental rate, pupal size, and egg production and viability. Trehalose was found to increase the pupal mass of male and female FCM, as well as the number of eggs laid per female. Cholesterol was found to increase developmental rate and the number of eggs laid. The main findings of this study were that diet additives could improve the massrearing of FCM for SIT and the competitiveness of the males, especially at lower temperatures. However, the additives were expensive and cost could well be a constraint to the wide scale implementation of the new technology.
- Full Text:
- Date Issued: 2017
- Authors: Daniel, Claire Ashleigh
- Date: 2017
- Subjects: Cryptophlebia leucotreta -- South Africa , Cryptophlebia leucotreta -- Reproduction -- Effect of temperature on , Cryptophlebia leucotreta -- Biological control -- South Africa , Citrus -- Diseases and pests -- Biological control -- South Africa , Insect pests -- Biological control -- South Africa , Insecticides , Citrus fruit industry -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5271 , vital:20803
- Description: The false codling moth (FCM), Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae) is a major pest of citrus and other important crops in Sub-Saharan Africa. The introduction of a sterile insect technique (SIT) programme for FCM in South Africa has proven to be very effective in the control of FCM. The objective was to flood citrus orchards with large numbers of sterile males resulting in a ratio of at least 10 sterile to 1 wild moth, increasing the probability of a female moth mating with a sterile male. This target is often achieved and the programme is generally successful, however there are some challenges regarding this programme. The mass rearing environment, artificial diet, handling methods and irradiation have an impact on sterile insect quality as environmental differences between the rearing facility and field, influences the insect phenotype and competitiveness. This is evident as wild male moths can theoretically actively fly at a temperature of 12°C and laboratory-reared sterilized moths, due to the radiation treatment, appear unable to fly below 20°C. As a consequence, sterile males are out-competed by wild males during the cooler months of the year. This is detrimental to the SIT programme as FCM do not undergo diapause, meaning they are active during winter and will still reproduce. Therefore, to maximize the effect of the SIT programme, it is vital to increase the flight ability of mass reared sterile males at lower temperatures. Various studies have shown that by adding cryoprotectants to the basic laboratory diets increases the cold tolerance of certain insects and thus may allow them to be mobile at lower temperatures, however it imperative that any chemical used to augment the commercial diet of the insect has no negative effects on the insect physiology and development. To investigate this detail for FCM, five generations of FCM were reared on diets augmented with various known insect cryoprotectants. These augmented FCM were subsequently used in experiments designed to determine firstly, if the cryoprotectants had a positive result on the cold tolerance of the FCM, and secondly, if they had any adverse effects on other physiological aspects such as duration of development. Laboratory trials indicated that the flight ability of male FCM was improved when larvae were reared on diets augmented with trehalose and cholesterol (with an average of 40 % of cholesterol and trehalose augmented males that flew at 15 °C where 0 % of the control flew). Results obtained during the field trials support the laboratory results as there was a significant increase in the number of trehalose augmented moths caught in the field during March and July (winter). Results also showed potential for cholesterol to be used as an additive. Other important findings show that both cholesterol and trehalose have no negative impacts on developmental rate, pupal size, and egg production and viability. Trehalose was found to increase the pupal mass of male and female FCM, as well as the number of eggs laid per female. Cholesterol was found to increase developmental rate and the number of eggs laid. The main findings of this study were that diet additives could improve the massrearing of FCM for SIT and the competitiveness of the males, especially at lower temperatures. However, the additives were expensive and cost could well be a constraint to the wide scale implementation of the new technology.
- Full Text:
- Date Issued: 2017
Interactions between two biological control agents released on Pereskia aculeata Miller (Cactaceae), in South Africa
- Authors: Mnqeta, Zezethu
- Date: 2017
- Subjects: Pereskia aculeata -- Biological control , Cactus -- Biological control -- South Africa , Alien plants -- Biological control -- South Africa , Flea beetles -- South Africa , Coreidae -- South Africa , Insects as biological pest control agents -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7949 , vital:21327
- Description: Pereskia aculeata Miller (Cactaceae) is an alien invasive plant introduced into South Africa from Brazil, which has negative impacts on native biodiversity in South Africa. Phenrica guerini Bechyne (Chrysomelidae) and Catorhintha schaffneri Brailovsky & Garcia (Coreidae) are two biological control agents released against P. aculeata in South Africa. Phenrica guerini was first released against P. aculeata, in 1991, followed by C. schaffneri in 2014. The overall aim of this study was to improve the biological control programme against P. aculeata in order to decrease its density to a level where it does not threaten the native biodiversity of South Africa. The first part of this study evaluated the efficacy of P. guerini on P. aculeata at Port Alfred (Eastern Cape) to better understand the role of P. guerini in the biological control of P. aculeata. An insecticide exclusion experiment was conducted over 100 days. Plots with P. guerini had a mean of 187 (SE ± 62) fewer leaves/m2 than plots without P. guerini. The agent reduced percentage cover in plots with P. guerini, with a mean of 19.42% (SE ± 3.15) lower cover than plots without P. guerini. Although P. guerini had an impact on P. aculeata at Port Alfred previous studies have indicated that a reduction to below 50% cover is required for native biodiversity to recover and the agent only reduced cover to 62% at Port Alfred. Phenrica guerini has therefore not reduced percentage cover sufficiently to completely control the weed. The data collected from Port Alfred was compared to the performance of the agent nationwide. Although P. guerini was found at far more sites than previously recorded, there were very few sites with comparable levels of damage to Port Alfred. This evidence suggests that P. guerini is not sufficiently damaging to reduce P. aculeata to acceptable levels and other biological control agents should be considered.Interactions between two biological control agents can have complex and unexpected impacts for a biological control programme. The second part of this study was to investigate interactions between C. schaffneri and P. guerini under laboratory conditions to test whether the two agents, individually or jointly, enhanced or reduced their impact on P. aculeata. Potted P. aculeata plants were exposed to one of four treatments: control (no agents), P. guerini only, C. schaffneri only and both species in combination. Four stocking densities, ranging from 2 to 12 insects per plant were used. Catorhintha schaffneri alone at high densities was more damaging than all other treatments with a significantly greater reduction in the mean number of leaves, 11.7 (SE ± 1.29), and shoot lengths, 2.17cm (SE ± O. 75). Even at lower density treatments, the combination of the two agents was not significantly more damaging than C. schaffneri alone and C. schaffneri was always more damaging than P. guerini alone. Mortality of P. guerini was significantly higher than C. schaffneri at the highest stocking density when in combination. Phenrica guerini contributes towards the biological control of P. aculeata at some sites in South Africa but not enough to completely control the weed. The antagonistic interaction between P. guerini and C. schaffneri suggests that these agents should not be released together because this would impact negatively on the overall biocontrol programme against P. aculeata. Catorhintha schaffneri should be released at sites were P. guerini is not present and evaluations of the success of this agent in the field should be conducted. Extrapolation of laboratory-based studies into the field is often challenging so mass-rearing of P. guerini should continue until there is convincing proof that C. schaffneri alone is more effective than P. guerini in the field.
- Full Text:
- Date Issued: 2017
- Authors: Mnqeta, Zezethu
- Date: 2017
- Subjects: Pereskia aculeata -- Biological control , Cactus -- Biological control -- South Africa , Alien plants -- Biological control -- South Africa , Flea beetles -- South Africa , Coreidae -- South Africa , Insects as biological pest control agents -- South Africa
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7949 , vital:21327
- Description: Pereskia aculeata Miller (Cactaceae) is an alien invasive plant introduced into South Africa from Brazil, which has negative impacts on native biodiversity in South Africa. Phenrica guerini Bechyne (Chrysomelidae) and Catorhintha schaffneri Brailovsky & Garcia (Coreidae) are two biological control agents released against P. aculeata in South Africa. Phenrica guerini was first released against P. aculeata, in 1991, followed by C. schaffneri in 2014. The overall aim of this study was to improve the biological control programme against P. aculeata in order to decrease its density to a level where it does not threaten the native biodiversity of South Africa. The first part of this study evaluated the efficacy of P. guerini on P. aculeata at Port Alfred (Eastern Cape) to better understand the role of P. guerini in the biological control of P. aculeata. An insecticide exclusion experiment was conducted over 100 days. Plots with P. guerini had a mean of 187 (SE ± 62) fewer leaves/m2 than plots without P. guerini. The agent reduced percentage cover in plots with P. guerini, with a mean of 19.42% (SE ± 3.15) lower cover than plots without P. guerini. Although P. guerini had an impact on P. aculeata at Port Alfred previous studies have indicated that a reduction to below 50% cover is required for native biodiversity to recover and the agent only reduced cover to 62% at Port Alfred. Phenrica guerini has therefore not reduced percentage cover sufficiently to completely control the weed. The data collected from Port Alfred was compared to the performance of the agent nationwide. Although P. guerini was found at far more sites than previously recorded, there were very few sites with comparable levels of damage to Port Alfred. This evidence suggests that P. guerini is not sufficiently damaging to reduce P. aculeata to acceptable levels and other biological control agents should be considered.Interactions between two biological control agents can have complex and unexpected impacts for a biological control programme. The second part of this study was to investigate interactions between C. schaffneri and P. guerini under laboratory conditions to test whether the two agents, individually or jointly, enhanced or reduced their impact on P. aculeata. Potted P. aculeata plants were exposed to one of four treatments: control (no agents), P. guerini only, C. schaffneri only and both species in combination. Four stocking densities, ranging from 2 to 12 insects per plant were used. Catorhintha schaffneri alone at high densities was more damaging than all other treatments with a significantly greater reduction in the mean number of leaves, 11.7 (SE ± 1.29), and shoot lengths, 2.17cm (SE ± O. 75). Even at lower density treatments, the combination of the two agents was not significantly more damaging than C. schaffneri alone and C. schaffneri was always more damaging than P. guerini alone. Mortality of P. guerini was significantly higher than C. schaffneri at the highest stocking density when in combination. Phenrica guerini contributes towards the biological control of P. aculeata at some sites in South Africa but not enough to completely control the weed. The antagonistic interaction between P. guerini and C. schaffneri suggests that these agents should not be released together because this would impact negatively on the overall biocontrol programme against P. aculeata. Catorhintha schaffneri should be released at sites were P. guerini is not present and evaluations of the success of this agent in the field should be conducted. Extrapolation of laboratory-based studies into the field is often challenging so mass-rearing of P. guerini should continue until there is convincing proof that C. schaffneri alone is more effective than P. guerini in the field.
- Full Text:
- Date Issued: 2017
Investigating herbivory and plant origin on tall-statured grasses in South Africa
- Authors: Canavan, Kim N
- Date: 2017
- Subjects: Insects as biological pest control agents -- South Africa , Arundo donax , Giant reed -- South Africa , Giant reed -- Biological control -- South Africa , Phragmites australis , Phragmites mauritianus , Phragmites , Tetramesa romana , Biological invasions -- South Africa , Wasps -- Host plants , Wasps -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/6147 , vital:21051
- Description: South African riparian zones have been heavily degraded through anthropogenic activities such as dam construction and extraction of water for irrigation, which has resulted in a loss of ecosystem services and functioning. A consequence of such disturbances to riparian areas is in their susceptibility to invasive alien species (IAS). One such IAS is the giant reed, Arundo donax L. (Poaceae), introduced to South Africa in the 1700s largely for erosion control. Arundo donax has since greatly expanded in the country and is now one of the most abundant IAS. Arundo donax has been found to displace native vegetation and in South Africa this will most likely lead to the displacement of the native tall-statured grasses, Phragmites australis (Cav.) Trin. ex Steud. and Phragmites mauritianus Kunth. This study aimed to enhance our understanding of the tall-statured grasses A. donax, P. australis and P. mauritianus to better manage them in riparian areas. For A. donax, biological control is seen as the most viable option to control stands in the long-term. However, before such a programme is put in place, it is important to first collect baseline data that can be used to guide the direction of the biological control project in South Africa. For the Phragmites spp., despite being a dominant vegetative type in riparian areas, very little is known about their status in South Africa. Furthermore, there have been increasing reports of both Phragmites species having an expansion of their range and abundance. In North America, there has been a similar trend of reed expansion and through molecular work it was determined that a cryptic invasion has occurred with the introduction of an invasive non-native haplotype from Europe. It is therefore unknown if Phragmites spp. populations are expanding due to anthropogenic activities or due to a cryptic invasion. To address these shortfalls in knowledge the study investigated the tall-statured grasses in two parts; firstly, molecular techniques are used to explore the plant origin and genetic diversity of A. donax, P. australis and P. mauritianus and secondly using the Enemy Release Hypothesis as a framework, herbivore assemblages for each reed was determined across their distribution in South Africa. Molecular-techniques determined that both P. australis and P. mauritianus had only one haplotype - known as haplotype K and haplotype V respectively, across their distribution. For P. australis, haplotype K shares a close connection with populations from a Mediterranean lineage and this was further confirmed with a shared grass-waxy band. The direction and timing of genetic exchange between the two regions could not be ascertained and thus still remains unknown. Microsatellite analysis determined that both Phragmites spp. had a high genetic diversity compared to worldwide lineages. With no evidence of any cryptic invasions of haplotypes from other regions, both Phragmites spp. populations are likely to be native to South Africa. For A. donax all populations across South Africa were determined to be haplotype M1; a cosmopolitan haplotype that has an ancient native range in Afghanistan and Pakistan (Indus Valley). Populations were found to have no genetic diversity and thus can be considered one clone. A pre-introductory survey determined a list of herbivores associated with each tall- statured grass. For A. donax, a total of seven herbivores were found. Of these, one herbivore, a galling wasp, Tetramesa romana Walker (Hymenoptera: Eurytomidae) was found to be highly abundant and widely distributed in South Africa. Tetramesa romana is already a biological control agent in North America and thus is likely exerting some pressure on A. donax populations in South Africa. For both Phragmites spp. a total of ten herbivores were found, although having higher species richness compared to A. donax, when compared to other regions, these native species have a relatively low species richness. Providing baseline data on plant origin, genetic diversity and herbivory on A. donax, P. australis and P. mauritianus has provided important information on managing these species in riparian ecosystems in South Africa. For the Phragmites spp. with no evidence of any cryptic invasions, it is recommended that reed stands continue to be managed as native species. Phragmites spp. are important dominant vegetative species and thus should be protected; however, if reed stands become expansive, control methods can be put in place to focus on managing spread and abundance. For A. donax, this study was able to provide pivotal information in guiding the biological control programme. By determining the ancient lineage of South African populations, research can be focused in this area to find potential biological control agents. Lastly, the pre-introductory survey determined that a biological control agent, T. romana was already established with an unknown introduction and also highlighted potential plant parts that should be targeted. In particular, no rhizome feeding herbivores were found in South Africa and therefore this highlights an important niche that should be explored in biological control agents.
- Full Text:
- Date Issued: 2017
- Authors: Canavan, Kim N
- Date: 2017
- Subjects: Insects as biological pest control agents -- South Africa , Arundo donax , Giant reed -- South Africa , Giant reed -- Biological control -- South Africa , Phragmites australis , Phragmites mauritianus , Phragmites , Tetramesa romana , Biological invasions -- South Africa , Wasps -- Host plants , Wasps -- South Africa
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/6147 , vital:21051
- Description: South African riparian zones have been heavily degraded through anthropogenic activities such as dam construction and extraction of water for irrigation, which has resulted in a loss of ecosystem services and functioning. A consequence of such disturbances to riparian areas is in their susceptibility to invasive alien species (IAS). One such IAS is the giant reed, Arundo donax L. (Poaceae), introduced to South Africa in the 1700s largely for erosion control. Arundo donax has since greatly expanded in the country and is now one of the most abundant IAS. Arundo donax has been found to displace native vegetation and in South Africa this will most likely lead to the displacement of the native tall-statured grasses, Phragmites australis (Cav.) Trin. ex Steud. and Phragmites mauritianus Kunth. This study aimed to enhance our understanding of the tall-statured grasses A. donax, P. australis and P. mauritianus to better manage them in riparian areas. For A. donax, biological control is seen as the most viable option to control stands in the long-term. However, before such a programme is put in place, it is important to first collect baseline data that can be used to guide the direction of the biological control project in South Africa. For the Phragmites spp., despite being a dominant vegetative type in riparian areas, very little is known about their status in South Africa. Furthermore, there have been increasing reports of both Phragmites species having an expansion of their range and abundance. In North America, there has been a similar trend of reed expansion and through molecular work it was determined that a cryptic invasion has occurred with the introduction of an invasive non-native haplotype from Europe. It is therefore unknown if Phragmites spp. populations are expanding due to anthropogenic activities or due to a cryptic invasion. To address these shortfalls in knowledge the study investigated the tall-statured grasses in two parts; firstly, molecular techniques are used to explore the plant origin and genetic diversity of A. donax, P. australis and P. mauritianus and secondly using the Enemy Release Hypothesis as a framework, herbivore assemblages for each reed was determined across their distribution in South Africa. Molecular-techniques determined that both P. australis and P. mauritianus had only one haplotype - known as haplotype K and haplotype V respectively, across their distribution. For P. australis, haplotype K shares a close connection with populations from a Mediterranean lineage and this was further confirmed with a shared grass-waxy band. The direction and timing of genetic exchange between the two regions could not be ascertained and thus still remains unknown. Microsatellite analysis determined that both Phragmites spp. had a high genetic diversity compared to worldwide lineages. With no evidence of any cryptic invasions of haplotypes from other regions, both Phragmites spp. populations are likely to be native to South Africa. For A. donax all populations across South Africa were determined to be haplotype M1; a cosmopolitan haplotype that has an ancient native range in Afghanistan and Pakistan (Indus Valley). Populations were found to have no genetic diversity and thus can be considered one clone. A pre-introductory survey determined a list of herbivores associated with each tall- statured grass. For A. donax, a total of seven herbivores were found. Of these, one herbivore, a galling wasp, Tetramesa romana Walker (Hymenoptera: Eurytomidae) was found to be highly abundant and widely distributed in South Africa. Tetramesa romana is already a biological control agent in North America and thus is likely exerting some pressure on A. donax populations in South Africa. For both Phragmites spp. a total of ten herbivores were found, although having higher species richness compared to A. donax, when compared to other regions, these native species have a relatively low species richness. Providing baseline data on plant origin, genetic diversity and herbivory on A. donax, P. australis and P. mauritianus has provided important information on managing these species in riparian ecosystems in South Africa. For the Phragmites spp. with no evidence of any cryptic invasions, it is recommended that reed stands continue to be managed as native species. Phragmites spp. are important dominant vegetative species and thus should be protected; however, if reed stands become expansive, control methods can be put in place to focus on managing spread and abundance. For A. donax, this study was able to provide pivotal information in guiding the biological control programme. By determining the ancient lineage of South African populations, research can be focused in this area to find potential biological control agents. Lastly, the pre-introductory survey determined that a biological control agent, T. romana was already established with an unknown introduction and also highlighted potential plant parts that should be targeted. In particular, no rhizome feeding herbivores were found in South Africa and therefore this highlights an important niche that should be explored in biological control agents.
- Full Text:
- Date Issued: 2017
Oxygen limitation and thermal tolerance: a comparison of pulmonate and patellogastropod limpets
- Authors: Kankondi, Sebbi
- Date: 2017
- Subjects: Thermal tolerance (Physiology) , Limpets -- Physiology , Limpets -- Effect of temperature on , Oxygen consumption (Physiology)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7570 , vital:21274
- Description: Since the scientific community anticipates a general change in the global climate, it has become increasingly important to develop predictive models which encompass mechanisms to generate reliable forecasts of the effects this change on ecological communities and processes. To this end, the oxygen- and capacity- limited thermal tolerance (OCLTT) theory has been developed as a link between various physiological processes, the thermal aspect of climate change and the associated shifts at different levels of biological organization. This study set out to assess the general applicability of the OCLTT theory in eurythermal pulmonate and patellogastropod limpets, whose distributions overlap on the high shore rocks of the warm temperate, south-east coast of South Africa.This was done by determining their microhabitat use, median lethal temperatures and cardiac, Arrhenius breakpoint temperatures as measures of their upper thermal tolerance limits, in both air and water. The main hypotheses of the study were that the pulmonate limpets would be more common than the patellogastropods in warmer microhabitats during low tide and would have higher thermal limits than the patellogastropods in air and vice versa in water. This was based on the assumption that the two limpet groups have different capabilities of oxygen consumption in air and water, due to differences in their respiratory organs and that this would be reflected in their thermal tolerances based on predictions made by the OCLTT. This assumption was important because oxygen consumption was not measured in this study. Previous research (e.g. Garrity, 1984), showed that a thermal stress gradient exists among rocky intertidal microhabitats. From most to least thermally stressful the gradient is horizontal surfaces> slopes> vertical surfaces> tide pools> crevices. The current study found that, while the pulmonate limpets, Siphonaria capensis and S. serrata, preferred rock pools, sloped, vertical and horizontal rock surfaces, the patellogastropod limpets, Cellana capensis and Scutellastra granularis, preferred rock pools and vertical rock surfaces. Furthermore, the pulmonate limpets were only common on horizontal rock surfaces where specific ameliorating conditions would have mitigated thermal stress there. In addition, C. capensis had similar thermal tolerance limits to the pulmonate limpets in air and the pulmonate limpets had similar and/or higher thermal tolerance limits compared to S. granularis in water. This indicates that the pulmonate limpets did not necessarily prefer warmer microhabitats than the patellogastropod limpets and that there were no differences in the collective upper thermal tolerance limits between the two limpet groups in either medium.Consequently, there was no indication from this study that an assumed superior capacity for oxygen supply translates into greater thermal tolerance and that the hypotheses based on the OCLTT were not supported. Although this was an indirect test of the OCLTT theory, I conclude that this study does not support the notion of its general applicability and that mechanisms other than those outlined by the OCLTT theory may help explain the patterns of thermal limitation observed in the current study.
- Full Text:
- Date Issued: 2017
- Authors: Kankondi, Sebbi
- Date: 2017
- Subjects: Thermal tolerance (Physiology) , Limpets -- Physiology , Limpets -- Effect of temperature on , Oxygen consumption (Physiology)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7570 , vital:21274
- Description: Since the scientific community anticipates a general change in the global climate, it has become increasingly important to develop predictive models which encompass mechanisms to generate reliable forecasts of the effects this change on ecological communities and processes. To this end, the oxygen- and capacity- limited thermal tolerance (OCLTT) theory has been developed as a link between various physiological processes, the thermal aspect of climate change and the associated shifts at different levels of biological organization. This study set out to assess the general applicability of the OCLTT theory in eurythermal pulmonate and patellogastropod limpets, whose distributions overlap on the high shore rocks of the warm temperate, south-east coast of South Africa.This was done by determining their microhabitat use, median lethal temperatures and cardiac, Arrhenius breakpoint temperatures as measures of their upper thermal tolerance limits, in both air and water. The main hypotheses of the study were that the pulmonate limpets would be more common than the patellogastropods in warmer microhabitats during low tide and would have higher thermal limits than the patellogastropods in air and vice versa in water. This was based on the assumption that the two limpet groups have different capabilities of oxygen consumption in air and water, due to differences in their respiratory organs and that this would be reflected in their thermal tolerances based on predictions made by the OCLTT. This assumption was important because oxygen consumption was not measured in this study. Previous research (e.g. Garrity, 1984), showed that a thermal stress gradient exists among rocky intertidal microhabitats. From most to least thermally stressful the gradient is horizontal surfaces> slopes> vertical surfaces> tide pools> crevices. The current study found that, while the pulmonate limpets, Siphonaria capensis and S. serrata, preferred rock pools, sloped, vertical and horizontal rock surfaces, the patellogastropod limpets, Cellana capensis and Scutellastra granularis, preferred rock pools and vertical rock surfaces. Furthermore, the pulmonate limpets were only common on horizontal rock surfaces where specific ameliorating conditions would have mitigated thermal stress there. In addition, C. capensis had similar thermal tolerance limits to the pulmonate limpets in air and the pulmonate limpets had similar and/or higher thermal tolerance limits compared to S. granularis in water. This indicates that the pulmonate limpets did not necessarily prefer warmer microhabitats than the patellogastropod limpets and that there were no differences in the collective upper thermal tolerance limits between the two limpet groups in either medium.Consequently, there was no indication from this study that an assumed superior capacity for oxygen supply translates into greater thermal tolerance and that the hypotheses based on the OCLTT were not supported. Although this was an indirect test of the OCLTT theory, I conclude that this study does not support the notion of its general applicability and that mechanisms other than those outlined by the OCLTT theory may help explain the patterns of thermal limitation observed in the current study.
- Full Text:
- Date Issued: 2017
Post-release evaluation and thermal physiology of the Pereskia stem-wilter, Catorhintha schaffneri (Coreidae), a new biological control agent for Pereskia aculeata (Cactaceae)
- Authors: Muskett, Phillippa Claire
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/36094 , vital:24477
- Description: Catorhintha schaffneri Brailovsky and Garcia (Hemiptera: Coreidae) is a biological control agent that was recently accepted for release in South Africa to control Pereskia aculeata Miller (Cactaceae), an invasive creeping cactus. The aim of this thesis was to conduct post-release research to ensure that C. schaffneri is utilised to its full potential. To achieve this aim, and focus release efforts, the thermal physiology of C. schaffneri was investigated to predict where in South Africa the agent is most likely to establish. These predictions were then tested by releasing the agent at field sites with a wide variety of climatic conditions and evaluating establishment success. When invasive plants invade a wide distribution, made up of areas with different climatic conditions, biological control agents may not establish or be effective throughout the invaded distribution. According to the thermal physiology of C. schaffneri, it is most likely to establish and become effective in the subtropical region of South Africa, along the coast of KwaZulu- Natal. Cold winters, or generally low year-round temperatures, may limit establishment in the more temperate areas of South Africa in the Eastern and Western Cape as well as inland in the Highveld region. These predictions can be used to focus release efforts to climatically suitable regions and stop releases in areas where C. schaffneri cannot survive. Predictions based on thermal physiology may not account for all of the variables which affect establishment. To account for other variables, the establishment of C. schaffneri was tested using closely monitored field release studies. During these studies the effect of other variables such as; microclimate temperature, humidity, precipitation, plant quality and release strategy were considered. Low humidity, precipitation and plant quality appear to affect the establishment of C. schaffneri in the subtropical areas of South Africa. The experiment was conducted during a period of drought, and this may have resulted in lower establishment rates. The most successful release strategy for C. schaffneri was the use of multiple, small releases rather than single releases of the same number of individuals. The field based study was therefore able to improve the biological control of P. aculeata by increasing the chance that each release of C. schaffneri results in establishment. The post-release studies presented in this thesis will increase the impact of C. schaffneri by focussing release efforts to climatically suitable sites, releasing at appropriate times of year and releasing the agent in a manner that increases establishment success. Post-release studies, such as those presented here, can make biological control programmes more efficient and effective.
- Full Text:
- Date Issued: 2017
- Authors: Muskett, Phillippa Claire
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/36094 , vital:24477
- Description: Catorhintha schaffneri Brailovsky and Garcia (Hemiptera: Coreidae) is a biological control agent that was recently accepted for release in South Africa to control Pereskia aculeata Miller (Cactaceae), an invasive creeping cactus. The aim of this thesis was to conduct post-release research to ensure that C. schaffneri is utilised to its full potential. To achieve this aim, and focus release efforts, the thermal physiology of C. schaffneri was investigated to predict where in South Africa the agent is most likely to establish. These predictions were then tested by releasing the agent at field sites with a wide variety of climatic conditions and evaluating establishment success. When invasive plants invade a wide distribution, made up of areas with different climatic conditions, biological control agents may not establish or be effective throughout the invaded distribution. According to the thermal physiology of C. schaffneri, it is most likely to establish and become effective in the subtropical region of South Africa, along the coast of KwaZulu- Natal. Cold winters, or generally low year-round temperatures, may limit establishment in the more temperate areas of South Africa in the Eastern and Western Cape as well as inland in the Highveld region. These predictions can be used to focus release efforts to climatically suitable regions and stop releases in areas where C. schaffneri cannot survive. Predictions based on thermal physiology may not account for all of the variables which affect establishment. To account for other variables, the establishment of C. schaffneri was tested using closely monitored field release studies. During these studies the effect of other variables such as; microclimate temperature, humidity, precipitation, plant quality and release strategy were considered. Low humidity, precipitation and plant quality appear to affect the establishment of C. schaffneri in the subtropical areas of South Africa. The experiment was conducted during a period of drought, and this may have resulted in lower establishment rates. The most successful release strategy for C. schaffneri was the use of multiple, small releases rather than single releases of the same number of individuals. The field based study was therefore able to improve the biological control of P. aculeata by increasing the chance that each release of C. schaffneri results in establishment. The post-release studies presented in this thesis will increase the impact of C. schaffneri by focussing release efforts to climatically suitable sites, releasing at appropriate times of year and releasing the agent in a manner that increases establishment success. Post-release studies, such as those presented here, can make biological control programmes more efficient and effective.
- Full Text:
- Date Issued: 2017
Post-release evaluation of the biological control programme against Cereus jamacaru De Candolle (Cactaceae), in South Africa
- Authors: Sutton, Guy Frederick
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7982 , vital:21330
- Description: Cereus jamacaru De Candolle (Cactaceae) is an environment-transforming weed of both agricultural and wildlife habitats in South Africa. Weed infestations reduce carrying capacity of the land, and pose a risk to livestock, wildlife and human safety due to the plant’s spiny thorns. The weed is considered to be under complete biological control in South Africa, due to its introduced control agent, Hypogeococcus festerianus Lizer y Trelles (Hemiptera: Pseudococcidae), although observational reports suggest that the level of success achieved is variable. In this thesis, a formal post-release evaluation of this biological control programme was conducted, specifically to determine the efficacy of H. festerianus as a biological control agent, and to identify factors which may limit or constrain the level of success achieved by the control agent. These data were collected with the intention of improving the control of C. jamacaru in South Africa. A field-based study of C. jamacaru population demographics investigated the efficacy of H. festerianus as a biological control agent of the weed, by integrating weed growth, fecundity and survival metrics with C. jamacaru population dynamics and demographic patterns from 8 sites where H. festerianus was present and 14 sites where the control agent was absent. The findings indicated that H. festerianus significantly reduced weed fecundity, which resulted in fewer seedling recruits, and that levels of plant mortality were greater at sites where H. festerianus was present. The reduction in weed fecundity and survival translated into negative population-level consequences for H. festerianus. Weed-population age frequency distributions in the absence of H. festerianus demonstrated a “reverse J-shaped” distribution, indicative of high recruitment rates and population stability, while C. jamacaru populations infected with H. festerianus were described by bell-shaped distributions, and were typified by limited recruitment, or a complete lack thereof. By constraining recruitment and inhibiting selfregeneration, H. festerianus appears to regulate populations of C. jamacaru. Predation and parasitism of H. festerianus was believed to be a limiting factor for the biological control programme against C. jamacaru in South Africa, although no formal evaluation of this claim had been undertaken. Accordingly, the assemblage of natural enemies acquired by H. festerianus in South Africa was identified by field-collections of infected H. festerianus gall-material. Further, timed point-count surveys of natural enemies associated with H. festerianus were performed and integrated with the data on the impact of H. festerianus on weed population dynamics to assess the impact of two prominent predaceous taxa on H. festerianus efficacy as a biological control agent. Although H. festerianus had acquired a diverse suite of novel natural enemies in South Africa, this has not prevented the biocontrol agent from having an impact on C. jamacaru populations, although other subtler effects cannot be ruled out. This study showed that biological control efforts employing H. festerianus for the management of C. jamacaru have been successful. Furthermore, these data demonstrated the utility of retrospective analyses in developing and improving the science of biological control, specifically how to improve candidate agent prioritisation, determining how many agents are required for successful biological control, and how to evaluate the success of biological control efforts. Improvements in our theoretical understanding of biological control will undoubtedly reduce costs of biological control programmes, improve success rates, and increase the predictability of biological control.
- Full Text:
- Date Issued: 2017
- Authors: Sutton, Guy Frederick
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7982 , vital:21330
- Description: Cereus jamacaru De Candolle (Cactaceae) is an environment-transforming weed of both agricultural and wildlife habitats in South Africa. Weed infestations reduce carrying capacity of the land, and pose a risk to livestock, wildlife and human safety due to the plant’s spiny thorns. The weed is considered to be under complete biological control in South Africa, due to its introduced control agent, Hypogeococcus festerianus Lizer y Trelles (Hemiptera: Pseudococcidae), although observational reports suggest that the level of success achieved is variable. In this thesis, a formal post-release evaluation of this biological control programme was conducted, specifically to determine the efficacy of H. festerianus as a biological control agent, and to identify factors which may limit or constrain the level of success achieved by the control agent. These data were collected with the intention of improving the control of C. jamacaru in South Africa. A field-based study of C. jamacaru population demographics investigated the efficacy of H. festerianus as a biological control agent of the weed, by integrating weed growth, fecundity and survival metrics with C. jamacaru population dynamics and demographic patterns from 8 sites where H. festerianus was present and 14 sites where the control agent was absent. The findings indicated that H. festerianus significantly reduced weed fecundity, which resulted in fewer seedling recruits, and that levels of plant mortality were greater at sites where H. festerianus was present. The reduction in weed fecundity and survival translated into negative population-level consequences for H. festerianus. Weed-population age frequency distributions in the absence of H. festerianus demonstrated a “reverse J-shaped” distribution, indicative of high recruitment rates and population stability, while C. jamacaru populations infected with H. festerianus were described by bell-shaped distributions, and were typified by limited recruitment, or a complete lack thereof. By constraining recruitment and inhibiting selfregeneration, H. festerianus appears to regulate populations of C. jamacaru. Predation and parasitism of H. festerianus was believed to be a limiting factor for the biological control programme against C. jamacaru in South Africa, although no formal evaluation of this claim had been undertaken. Accordingly, the assemblage of natural enemies acquired by H. festerianus in South Africa was identified by field-collections of infected H. festerianus gall-material. Further, timed point-count surveys of natural enemies associated with H. festerianus were performed and integrated with the data on the impact of H. festerianus on weed population dynamics to assess the impact of two prominent predaceous taxa on H. festerianus efficacy as a biological control agent. Although H. festerianus had acquired a diverse suite of novel natural enemies in South Africa, this has not prevented the biocontrol agent from having an impact on C. jamacaru populations, although other subtler effects cannot be ruled out. This study showed that biological control efforts employing H. festerianus for the management of C. jamacaru have been successful. Furthermore, these data demonstrated the utility of retrospective analyses in developing and improving the science of biological control, specifically how to improve candidate agent prioritisation, determining how many agents are required for successful biological control, and how to evaluate the success of biological control efforts. Improvements in our theoretical understanding of biological control will undoubtedly reduce costs of biological control programmes, improve success rates, and increase the predictability of biological control.
- Full Text:
- Date Issued: 2017
Release success of captive bred Cape Vultures (Gyps coprotheres) in the Magaliesberg Mountains, South Africa
- Authors: Hirschauer, Maggie
- Date: 2017
- Subjects: Vultures -- South Africa -- Magaliesburg , Vultures -- South Africa -- Behavior
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4743 , vital:20720
- Description: The Cape Vulture, Gyps coprotheres, is currently classified as ‘endangered’. Endemic to southern Africa, its population has declined continuously over the past 40 years. The species is facing multiple anthropogenic threats. Notably, birds frequently collide with power lines and some cannot be released after treatment. This has led to the establishment of a captive breeding population with the hope that captive bred young can supplement wild populations and re-establish a now- abandoned breeding colony in the Magaliesberg Mountains, South Africa. This study aimed to follow the breeding behaviours of the captive colony and assess the appropriateness of chick rearing conditions. The study also aimed to monitor the behaviour, physical condition and dispersal of ten captive bred vultures after release in relation to their age. Behavioural observations of captive adult breeding and parental behaviours were conducted to establish whether chicks developed under comparable conditions to wild chicks. A high percentage of total colony copulation attempts (22 %) were extra-pair copulations. Four paired males formed ephemeral extra-pair relationships, two of which were homosexual. Chicks fledged earlier than wild chicks, on average at 128 days old. Wild and captive bred birds were observed at carcasses to compare competitive and feeding behaviours. Older birds, both wild and captive, fed the most efficiently. Preliminary evidence suggests females are more dominant and have higher display rates than males. Captive bred juvenile and four year old birds’ competitive and feeding behaviours (interaction rate, feeding rate, display rate, dominance, aggressiveness, and feeding efficiency) were the closest to, but still generally below, average values for same-aged wild birds. An index of body condition, body mass, and the prevalence of fault bars on the rectrices were used to assess their physical condition. After eight months, none of the ten birds had moved more than 8 km from the release site, nor had they foraged away from the vulture restaurant on site. Although altitude records of > 3100 m were recorded, their flight skills seemed inadequate. Future management considerations include the initiation of a pre-release exercise regime, the establishment of an acclimatization enclosure removed from the breeding site, and a varied or reduced post-release feeding schedule. Fledglings should be relocated and housed at the release enclosure until they are four years old.
- Full Text:
- Date Issued: 2017
- Authors: Hirschauer, Maggie
- Date: 2017
- Subjects: Vultures -- South Africa -- Magaliesburg , Vultures -- South Africa -- Behavior
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4743 , vital:20720
- Description: The Cape Vulture, Gyps coprotheres, is currently classified as ‘endangered’. Endemic to southern Africa, its population has declined continuously over the past 40 years. The species is facing multiple anthropogenic threats. Notably, birds frequently collide with power lines and some cannot be released after treatment. This has led to the establishment of a captive breeding population with the hope that captive bred young can supplement wild populations and re-establish a now- abandoned breeding colony in the Magaliesberg Mountains, South Africa. This study aimed to follow the breeding behaviours of the captive colony and assess the appropriateness of chick rearing conditions. The study also aimed to monitor the behaviour, physical condition and dispersal of ten captive bred vultures after release in relation to their age. Behavioural observations of captive adult breeding and parental behaviours were conducted to establish whether chicks developed under comparable conditions to wild chicks. A high percentage of total colony copulation attempts (22 %) were extra-pair copulations. Four paired males formed ephemeral extra-pair relationships, two of which were homosexual. Chicks fledged earlier than wild chicks, on average at 128 days old. Wild and captive bred birds were observed at carcasses to compare competitive and feeding behaviours. Older birds, both wild and captive, fed the most efficiently. Preliminary evidence suggests females are more dominant and have higher display rates than males. Captive bred juvenile and four year old birds’ competitive and feeding behaviours (interaction rate, feeding rate, display rate, dominance, aggressiveness, and feeding efficiency) were the closest to, but still generally below, average values for same-aged wild birds. An index of body condition, body mass, and the prevalence of fault bars on the rectrices were used to assess their physical condition. After eight months, none of the ten birds had moved more than 8 km from the release site, nor had they foraged away from the vulture restaurant on site. Although altitude records of > 3100 m were recorded, their flight skills seemed inadequate. Future management considerations include the initiation of a pre-release exercise regime, the establishment of an acclimatization enclosure removed from the breeding site, and a varied or reduced post-release feeding schedule. Fledglings should be relocated and housed at the release enclosure until they are four years old.
- Full Text:
- Date Issued: 2017
The ecological impacts of pollution on a river ecosystem: a community index and stable isotope approach
- Authors: Gininda, Simphiwe Linah
- Date: 2017
- Subjects: Water -- Pollution -- Bloukrans River , Water quality -- South Africa -- Makhanda , Stream ecology -- South Africa -- Makhanda , South African Scoring System , Sewage disposal in rivers, lakes, etc. -- South Africa -- Makhanda , Agricultural ecology -- South Africa -- Makhanda , Agricultural pollution -- South Africa -- Makhanda
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7993 , vital:21331
- Description: For decades, urbanized rivers have been modified to meet the needs of constantly expanding human populations in many countries around the world. The Bloukrans River in Grahamstown is one of the polluted and structurally modified urban rivers in South Africa, and there is no published information regarding its water quality and ecological status. Water quality is threatened by human activities including the disposal of treated and raw sewage, livestock farming, and agriculture. This study was conducted to determine the ecological status of the river by assessing its biological, chemical, and physical components in relation to man-mediated activities. Biological responses of macroinvertebrates were used to assess changes in water quality through space and time based on the South African Scoring System version 5 and the Average Score per Taxon water quality indices. The results showed poor water quality due to high nitrate and ammonium concentrations derived from sewage, and channel modifications by agricultural activities and dumping of solid waste. Channel width, water depth, dissolved oxygen, nitrate, and ammonium concentrations were the main drivers of macroinvertebrate distribution patterns and had the most influence on the variability in macroinvertebrates taxa richness, diversity and abundance. Diatoms were also used to assess water quality, specifically to indicate the trophic status of the river based on changes in the Trophic Diatom Index. The results suggested that the Bloukrans River was eutrophic during the course of this study. However, the trophic status varied with freshwater input, resulting in mesotrophic conditions during flooding and eutrophication in dry seasons. Changes in pH, phosphate concentration, water velocity (current speed), and temperature influenced the distribution of diatoms in the Bloukrans River. However, only pH was important at the community level and significantly influenced diatom abundances. Stable nitrogen isotope ratios (S15N) of autotrophs and primary and secondary consumers revealed noticeable differences between tissues of organisms exposed to treated sewage and those without any exposure. The S15N values in biota occurring above the sewage treatment discharge point were low, and those collected below the sewage point were higher. Although fertilizer derived nitrogen is generally depleted in 15N, agriculture-derived nitrogen could not be excluded as a possible source since animals at the sample site that was most affected by agricultural activities had the highest S15N values. This study provided valuable information on the ecological status of the Bloukrans River and identified the major activities associated with reduced biodiversity and water quality.
- Full Text:
- Date Issued: 2017
- Authors: Gininda, Simphiwe Linah
- Date: 2017
- Subjects: Water -- Pollution -- Bloukrans River , Water quality -- South Africa -- Makhanda , Stream ecology -- South Africa -- Makhanda , South African Scoring System , Sewage disposal in rivers, lakes, etc. -- South Africa -- Makhanda , Agricultural ecology -- South Africa -- Makhanda , Agricultural pollution -- South Africa -- Makhanda
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7993 , vital:21331
- Description: For decades, urbanized rivers have been modified to meet the needs of constantly expanding human populations in many countries around the world. The Bloukrans River in Grahamstown is one of the polluted and structurally modified urban rivers in South Africa, and there is no published information regarding its water quality and ecological status. Water quality is threatened by human activities including the disposal of treated and raw sewage, livestock farming, and agriculture. This study was conducted to determine the ecological status of the river by assessing its biological, chemical, and physical components in relation to man-mediated activities. Biological responses of macroinvertebrates were used to assess changes in water quality through space and time based on the South African Scoring System version 5 and the Average Score per Taxon water quality indices. The results showed poor water quality due to high nitrate and ammonium concentrations derived from sewage, and channel modifications by agricultural activities and dumping of solid waste. Channel width, water depth, dissolved oxygen, nitrate, and ammonium concentrations were the main drivers of macroinvertebrate distribution patterns and had the most influence on the variability in macroinvertebrates taxa richness, diversity and abundance. Diatoms were also used to assess water quality, specifically to indicate the trophic status of the river based on changes in the Trophic Diatom Index. The results suggested that the Bloukrans River was eutrophic during the course of this study. However, the trophic status varied with freshwater input, resulting in mesotrophic conditions during flooding and eutrophication in dry seasons. Changes in pH, phosphate concentration, water velocity (current speed), and temperature influenced the distribution of diatoms in the Bloukrans River. However, only pH was important at the community level and significantly influenced diatom abundances. Stable nitrogen isotope ratios (S15N) of autotrophs and primary and secondary consumers revealed noticeable differences between tissues of organisms exposed to treated sewage and those without any exposure. The S15N values in biota occurring above the sewage treatment discharge point were low, and those collected below the sewage point were higher. Although fertilizer derived nitrogen is generally depleted in 15N, agriculture-derived nitrogen could not be excluded as a possible source since animals at the sample site that was most affected by agricultural activities had the highest S15N values. This study provided valuable information on the ecological status of the Bloukrans River and identified the major activities associated with reduced biodiversity and water quality.
- Full Text:
- Date Issued: 2017
The effect of shade on the biological control of Salvinia molesta D.S. Mitchell [Salviniaceae] by the weevil, Cyrtobagous salviniae Calder and Sands [Curculionidae]
- Authors: Maseko, Zolile
- Date: 2017
- Subjects: Salvinia molesta , Aquatic weeds -- Biological control , Beetles , Insects as biological pest control agents
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4808 , vital:20726
- Description: Salvinia molesta, a floating aquatic weed, is a global menace in many water bodies and waterways. The weed disrupts the ecological balance wherever it invades and also has wide ranging economic and health impacts. Its impact has resulted in the need to control it, and while chemical and mechanical control are often ineffective, biological control by the weevil Cyrtobagous salviniae is largely successful. However, in many parts of the world, including South Africa, biological control of S. molesta has been less effective where the weed grows as an understory species. Shallow and shaded waters characteristically found at the margins of water bodies provide a refuge for S. molesta. Therefore, the aim of the study was to determine the effect of shade on the efficacy of biological control of S. molesta. Investigations into the problems associated with control in the shade were carried out in a greenhouse and in the field. In controlled greenhouse experiments, plants were grown at high and low nutrient levels in individual mesocosms, at three varying levels of shade, where half the mesocosms were inoculated with C. salviniae. Plants in high nutrient conditions were significantly more productive in terms of biomass accumulation, compared to those grown at low nutrient levels, in both the absence and presence of herbivory at all levels of shade tested. Plants grown in the shade and in high nutrient conditions had significantly higher quality compared to the ones exposed to full sun. Higher plant quality in the shade consequently resulted in accelerated fecundity for C. salviniae resulting in significantly higher weevil populations. Furthermore, less damage was recorded on plants in the shade, possibly due to the high nitrogen concentrations which may have deterred grazing by C. salviniae. However, in the absence of shading, plants were of lower quality and consequently sustained more damage from herbivores despite lower weevil populations. In contrast to the greenhouse, there were no differences in biomass recorded in the field at two nutrient levels and in the presence of herbivory for both shade and open sites. Nutrients added to high nutrient treatment quadrats diffused evenly across the water body resulting in uniform nutrient distribution, hence uniform plant biomass and carbon-nitrogen ratio. Despite the lack of statistical differences, more weevils were found in the full sun plots, while modest populations were recorded in the shade. Higher weevil populations consequently led to more damage in the sun, a situation that has been observed in most field sites in South Africa. The results therefore suggest that nutrients were pivotal in plant growth compared to light regimes (amount of PAR). Plant quality significantly influenced weevil populations and plant damage in both studies, demonstrating that plant nitrogen plays a crucial role in the plant- herbivore system. Furthermore, in both the greenhouse and field, despite lack of statistical differences, plants exposed to full sunlight suffered more damage than shade plants, pointing towards better control in the sun compared to the shade, suggesting that there is greater preference of sun-exposed plants for grazing by the weevils. The results from this study add to the growing body of literature that plant quality is a major factor in determining the success of aquatic weed biological control programmes.
- Full Text:
- Date Issued: 2017
- Authors: Maseko, Zolile
- Date: 2017
- Subjects: Salvinia molesta , Aquatic weeds -- Biological control , Beetles , Insects as biological pest control agents
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4808 , vital:20726
- Description: Salvinia molesta, a floating aquatic weed, is a global menace in many water bodies and waterways. The weed disrupts the ecological balance wherever it invades and also has wide ranging economic and health impacts. Its impact has resulted in the need to control it, and while chemical and mechanical control are often ineffective, biological control by the weevil Cyrtobagous salviniae is largely successful. However, in many parts of the world, including South Africa, biological control of S. molesta has been less effective where the weed grows as an understory species. Shallow and shaded waters characteristically found at the margins of water bodies provide a refuge for S. molesta. Therefore, the aim of the study was to determine the effect of shade on the efficacy of biological control of S. molesta. Investigations into the problems associated with control in the shade were carried out in a greenhouse and in the field. In controlled greenhouse experiments, plants were grown at high and low nutrient levels in individual mesocosms, at three varying levels of shade, where half the mesocosms were inoculated with C. salviniae. Plants in high nutrient conditions were significantly more productive in terms of biomass accumulation, compared to those grown at low nutrient levels, in both the absence and presence of herbivory at all levels of shade tested. Plants grown in the shade and in high nutrient conditions had significantly higher quality compared to the ones exposed to full sun. Higher plant quality in the shade consequently resulted in accelerated fecundity for C. salviniae resulting in significantly higher weevil populations. Furthermore, less damage was recorded on plants in the shade, possibly due to the high nitrogen concentrations which may have deterred grazing by C. salviniae. However, in the absence of shading, plants were of lower quality and consequently sustained more damage from herbivores despite lower weevil populations. In contrast to the greenhouse, there were no differences in biomass recorded in the field at two nutrient levels and in the presence of herbivory for both shade and open sites. Nutrients added to high nutrient treatment quadrats diffused evenly across the water body resulting in uniform nutrient distribution, hence uniform plant biomass and carbon-nitrogen ratio. Despite the lack of statistical differences, more weevils were found in the full sun plots, while modest populations were recorded in the shade. Higher weevil populations consequently led to more damage in the sun, a situation that has been observed in most field sites in South Africa. The results therefore suggest that nutrients were pivotal in plant growth compared to light regimes (amount of PAR). Plant quality significantly influenced weevil populations and plant damage in both studies, demonstrating that plant nitrogen plays a crucial role in the plant- herbivore system. Furthermore, in both the greenhouse and field, despite lack of statistical differences, plants exposed to full sunlight suffered more damage than shade plants, pointing towards better control in the sun compared to the shade, suggesting that there is greater preference of sun-exposed plants for grazing by the weevils. The results from this study add to the growing body of literature that plant quality is a major factor in determining the success of aquatic weed biological control programmes.
- Full Text:
- Date Issued: 2017
The effects of a lion (Panthera Leo) re-introduction on a resident cheetah (Acinonyx Jubatus) population In Mountain Zebra National Park, Eastern Cape, South Africa
- Authors: Van de Vyver, Daniel
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7420 , vital:21259
- Description: The global decline of large (> 10 kg) carnivores has resulted in a variety of conservation measures being put into practice to prevent extinctions. The establishment of predator-proof fences around protected areas has been a successful tool for reducing human-predator conflict. Furthermore, the re-introduction of large carnivores into small (< 1 000 km²), enclosed reserves has aided in the conservation of many species. Cheetahs (Acinonyx jubatus) and lions (Panthera leo) have benefitted from such re-introductions. The re-introduction of cheetahs before lions into the Mountain Zebra National Park (MZNP) in the Eastern Cape Province of South Africa provided a unique opportunity to study the effects of lions on an already established cheetah population. Spatial data were downloaded remotely from GPS collared individuals (n=4) and cheetah kill data were collected using the GPS cluster method before (2012-2013) and after (2013-2014) the lion (n=3) re-introduction. The same methods were used for lion kill data collection once they had been re-introduced. In general, cheetah home range size did not change after the lion re-introduction. Cheetahs selected areas with a combination of open and closed vegetation covers, while lions selected either open or closed areas of vegetation covers. In addition, as vegetation cover became thicker, the presence of cheetahs decreased. The cheetahs preyed upon seven species before and 11 species after the lion re-introduction. Medium sized prey comprised the bulk of the cheetah diet with kudu (Tragelaphus strepsiceros) and springbok (Antidorcas marsupialis) being the preferred species both before and after the lion re-introduction. The lion diets consisted of medium to large sized prey, with the male lions selecting eland (Tragelaphus oryx) and buffalo (Syncerus caffer) and the lioness selecting red hartebeest (Alcelaphus buselaphus). The cheetahs had no significant dietary overlap with the lions and there was only one record of kleptoparasitism. The results of my study indicate that cheetahs are able to co-exist with lions when lions are at low densities in an enclosed reserve. The cheetahs did not experience landscape-level displacement because they made fine-scale adjustments to avoid lions within their environment. This adaptability may have important management implications for future re-introductions of cheetahs into enclosed game reserves.
- Full Text:
- Date Issued: 2017
- Authors: Van de Vyver, Daniel
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7420 , vital:21259
- Description: The global decline of large (> 10 kg) carnivores has resulted in a variety of conservation measures being put into practice to prevent extinctions. The establishment of predator-proof fences around protected areas has been a successful tool for reducing human-predator conflict. Furthermore, the re-introduction of large carnivores into small (< 1 000 km²), enclosed reserves has aided in the conservation of many species. Cheetahs (Acinonyx jubatus) and lions (Panthera leo) have benefitted from such re-introductions. The re-introduction of cheetahs before lions into the Mountain Zebra National Park (MZNP) in the Eastern Cape Province of South Africa provided a unique opportunity to study the effects of lions on an already established cheetah population. Spatial data were downloaded remotely from GPS collared individuals (n=4) and cheetah kill data were collected using the GPS cluster method before (2012-2013) and after (2013-2014) the lion (n=3) re-introduction. The same methods were used for lion kill data collection once they had been re-introduced. In general, cheetah home range size did not change after the lion re-introduction. Cheetahs selected areas with a combination of open and closed vegetation covers, while lions selected either open or closed areas of vegetation covers. In addition, as vegetation cover became thicker, the presence of cheetahs decreased. The cheetahs preyed upon seven species before and 11 species after the lion re-introduction. Medium sized prey comprised the bulk of the cheetah diet with kudu (Tragelaphus strepsiceros) and springbok (Antidorcas marsupialis) being the preferred species both before and after the lion re-introduction. The lion diets consisted of medium to large sized prey, with the male lions selecting eland (Tragelaphus oryx) and buffalo (Syncerus caffer) and the lioness selecting red hartebeest (Alcelaphus buselaphus). The cheetahs had no significant dietary overlap with the lions and there was only one record of kleptoparasitism. The results of my study indicate that cheetahs are able to co-exist with lions when lions are at low densities in an enclosed reserve. The cheetahs did not experience landscape-level displacement because they made fine-scale adjustments to avoid lions within their environment. This adaptability may have important management implications for future re-introductions of cheetahs into enclosed game reserves.
- Full Text:
- Date Issued: 2017
The epidemiology of African horse sickness in the Eastern Cape, South Africa
- Authors: Riddin, Megan Amy
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/64460 , vital:28546
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
- Authors: Riddin, Megan Amy
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/64460 , vital:28546
- Description: Expected release date-May 2019
- Full Text:
- Date Issued: 2017
The isolation and genetic characterisation of a novel alphabaculovirus for the microbial control of Cryptophlebia peltastica and closely related tortricid pests
- Authors: Marsberg, Tamryn
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/59292 , vital:27543
- Description: Cryptophlebia peltastica (Meyrick) (Lepidoptera: Tortricidae) is an economically damaging pest of litchis and macadamias in South Africa. Cryptophlebia peltastica causes both pre- and post-harvest damage to litchis, reducing overall yields and thus classifying the pest as a phytosanitary risk. Various control methods have been implemented against C. peltastica in an integrated pest management programme. These control methods include chemical control, cultural control and biological control. However, these methods have not yet provided satisfactory control as of yet. As a result, an alternative control option needs to be identified and implemented into the IPM programme. An alternative method of control that has proved successful in other agricultural sectors and not yet implemented in the control of C. peltastica is that of microbial control, specifically the use of baculovirus biopesticides. This study aimed to isolate and characterise a novel baculovirus from a laboratory culture of C. peltastica that could be used as a commercially available baculovirus biopesticide. In order to isolate a baculovirus a laboratory culture of C. peltastica was successfully established at Rhodes University, Grahamstown, South Africa. This is the first time a laboratory culture of C. peltastica has been established. This allowed for various biological aspects of the pest to be determined, which included: length of the life cycle, fecundity and time to oviposition, egg and larval development and percentage hatch. The results obtained from these studies found that the biology of C. peltastica was similar to that of Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae). Once the laboratory culture had reached high densities, larvae showing symptoms of baculovirus infection were observed. Symptomatic larvae were collected and examined for the presence of a baculovirus. An alphabaculovirus (NPV) was successfully isolated and morphologically identified using purified OBs that were sectioned and observed by transmission electron microscopy. This was then confirmed by amplifying the polyhedrin gene region using degenerate primers. A BLAST analysis found a 93% similarity to a partial polyhedrin gene sequence to be that of Epinotia granitalis (Butler) (Lepidoptera: Tortricidae). The alphabaculovirus was then genetically characterised by generating restriction profiles and sequencing the whole genome. Due to the novelty of the virus, no comparison could be made. The biological activity of the alphabaculovirus was then tested against C. peltastica and two closely related Tortricidae pests: T. leucotreta and Cydiapomonella (Linnaeous) (Lepidoptera: Tortricidae). The alphabaculovirus was highly virulent against all three species. The lethal concentrations (LC50 and LC90) for the virus against C. peltastica was 8.19 x 103 and 3.33 x 105 OBs/ml. The LC50 and LC90 for T. leucotreta was 2.29 x 103 and 9.97 x 104 OBs/ml, respectively and C. pomonella had a LC50 of 1.43 x 103 OBs/ml and LC90 1.26 x 104 OBs/ml. The virus was particularly virulent against T. leucotreta and C. pomonella as compared to C. peltastica. The biological activity of the alphabaculovirus was also tested against CpGV resistant European C. pomonella. From the results it was observed that the virus had the ability to overcome the resistance in C. pomonella and could potentially be used in the resistance management of C. pomonella. With the successful biological activity results obtained from this study, preliminary investigation were made into the mass production of the alphabaculovirus using both the in vivo and in vitro production methods. For in vivo production both the homologous host (C. peltastica) and a heterologous host (T leucotreta) were investigated. Preliminary studies focused on determining the biological activity in fifth instars of both hosts. Fifth instar LC50 and LC90 values for C. peltastica were 3.43 x 103 and 1.11 x 107 OBs/ml and for T. leucotreta the LC50 and LC90 values were 2.53 x 103 and 8.82 x 106 OBs/ml, respectively. The average yield of virus produced in each species was also determined. Cryptophlebia peltastica had the highest viral yield of 5.37 x 1010 OBs/larva and 2.93 x 1010 OBs/larva for T. leucotreta. The results obtained, from the preliminary investigation concluded that the virus could be produced in vivo in both C. peltastica and T. leucotreta, however further research is required into the mass production in both hosts. The in vitro production of the virus was also considered and the susceptibility of the virus was tested against the C. pomonella cell line, Cp14R. After infection of the Cp14R cells with budded virus collected from fifth instar C. peltastica larvae, OBs could be observed after three days. Thus, the alphabaculovirus is susceptible to the Cp14R cell line, thus has the potential to be produced in vitro and further characterised. This study is the first to report of the identification and characterisation of a novel alphabaculovirus isolated from a laboratory reared culture of C. peltastica and the potential for it to be commercially developed into a bipoesticide and used against Tortricidae pests.
- Full Text:
- Date Issued: 2017
- Authors: Marsberg, Tamryn
- Date: 2017
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/59292 , vital:27543
- Description: Cryptophlebia peltastica (Meyrick) (Lepidoptera: Tortricidae) is an economically damaging pest of litchis and macadamias in South Africa. Cryptophlebia peltastica causes both pre- and post-harvest damage to litchis, reducing overall yields and thus classifying the pest as a phytosanitary risk. Various control methods have been implemented against C. peltastica in an integrated pest management programme. These control methods include chemical control, cultural control and biological control. However, these methods have not yet provided satisfactory control as of yet. As a result, an alternative control option needs to be identified and implemented into the IPM programme. An alternative method of control that has proved successful in other agricultural sectors and not yet implemented in the control of C. peltastica is that of microbial control, specifically the use of baculovirus biopesticides. This study aimed to isolate and characterise a novel baculovirus from a laboratory culture of C. peltastica that could be used as a commercially available baculovirus biopesticide. In order to isolate a baculovirus a laboratory culture of C. peltastica was successfully established at Rhodes University, Grahamstown, South Africa. This is the first time a laboratory culture of C. peltastica has been established. This allowed for various biological aspects of the pest to be determined, which included: length of the life cycle, fecundity and time to oviposition, egg and larval development and percentage hatch. The results obtained from these studies found that the biology of C. peltastica was similar to that of Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae). Once the laboratory culture had reached high densities, larvae showing symptoms of baculovirus infection were observed. Symptomatic larvae were collected and examined for the presence of a baculovirus. An alphabaculovirus (NPV) was successfully isolated and morphologically identified using purified OBs that were sectioned and observed by transmission electron microscopy. This was then confirmed by amplifying the polyhedrin gene region using degenerate primers. A BLAST analysis found a 93% similarity to a partial polyhedrin gene sequence to be that of Epinotia granitalis (Butler) (Lepidoptera: Tortricidae). The alphabaculovirus was then genetically characterised by generating restriction profiles and sequencing the whole genome. Due to the novelty of the virus, no comparison could be made. The biological activity of the alphabaculovirus was then tested against C. peltastica and two closely related Tortricidae pests: T. leucotreta and Cydiapomonella (Linnaeous) (Lepidoptera: Tortricidae). The alphabaculovirus was highly virulent against all three species. The lethal concentrations (LC50 and LC90) for the virus against C. peltastica was 8.19 x 103 and 3.33 x 105 OBs/ml. The LC50 and LC90 for T. leucotreta was 2.29 x 103 and 9.97 x 104 OBs/ml, respectively and C. pomonella had a LC50 of 1.43 x 103 OBs/ml and LC90 1.26 x 104 OBs/ml. The virus was particularly virulent against T. leucotreta and C. pomonella as compared to C. peltastica. The biological activity of the alphabaculovirus was also tested against CpGV resistant European C. pomonella. From the results it was observed that the virus had the ability to overcome the resistance in C. pomonella and could potentially be used in the resistance management of C. pomonella. With the successful biological activity results obtained from this study, preliminary investigation were made into the mass production of the alphabaculovirus using both the in vivo and in vitro production methods. For in vivo production both the homologous host (C. peltastica) and a heterologous host (T leucotreta) were investigated. Preliminary studies focused on determining the biological activity in fifth instars of both hosts. Fifth instar LC50 and LC90 values for C. peltastica were 3.43 x 103 and 1.11 x 107 OBs/ml and for T. leucotreta the LC50 and LC90 values were 2.53 x 103 and 8.82 x 106 OBs/ml, respectively. The average yield of virus produced in each species was also determined. Cryptophlebia peltastica had the highest viral yield of 5.37 x 1010 OBs/larva and 2.93 x 1010 OBs/larva for T. leucotreta. The results obtained, from the preliminary investigation concluded that the virus could be produced in vivo in both C. peltastica and T. leucotreta, however further research is required into the mass production in both hosts. The in vitro production of the virus was also considered and the susceptibility of the virus was tested against the C. pomonella cell line, Cp14R. After infection of the Cp14R cells with budded virus collected from fifth instar C. peltastica larvae, OBs could be observed after three days. Thus, the alphabaculovirus is susceptible to the Cp14R cell line, thus has the potential to be produced in vitro and further characterised. This study is the first to report of the identification and characterisation of a novel alphabaculovirus isolated from a laboratory reared culture of C. peltastica and the potential for it to be commercially developed into a bipoesticide and used against Tortricidae pests.
- Full Text:
- Date Issued: 2017
The pest status and integrated management programme of carob moth, Ectomyelois ceratoniae Zeller, attacking citrus in South Africa
- Authors: Thackeray, Sean Robin
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7758 , vital:21293
- Description: The carob moth, Ectomyelois ceratoniae Zeller, is a pest of agricultural commodities and stored products around the world. Carob moth is known to infest citrus in the Mediterranean region and in southern Africa. In grapefruit cultivars, carob moth infestations are associated with high levels of mealybug. However, although this relationship has been observed in other citrus types such as Navel oranges, this has never been quantified. A recent survey of infested fruit from various production areas in South Africa indicated that the pest status of carob moth on Navel oranges may have been underestimated. As a result of the incidental pest status of carob moth on citrus in South Africa in the past, a species specific integrated pest management (IPM) programme does not exist. Therefore, the overriding aim of this theses was to evaluate the pest status of carob moth in citrus and establish a species specific IPM programme by determine the autecology of carob moth in citrus. Reliable methods for monitoring carob moth in citrus orchards both for producers and for research purposes were developed. A user-friendly monitoring method for determining weekly carob moth infestation through dropped fruit was suitable for producers. A timed scouting method was also developed; although the accuracy of this method varied with the experience of the scout. The pest status of carob moth was highest in the Loskop Valley, Nelspruit and the Vaalharts production areas and economic injury to growers ranged from R512.35 to R3 719.80 per hectare as a direct result of infestation. No infestation was recorded in the Sundays River Valley and Citrusdal production areas over both the 2014-15 and 201516 growing seasons. A laboratory study showed the survival of carob moth larvae infesting citrus is less than 10% in the absence of mealybug. However, this increases to almost 40% in the presence of mealybug residues and sooty mould. There was a significant relationship between carob infestation at harvest and mealybug infestation in the middle months of the growing season. The relationship between carob moth and mealybug indicates that current production guidelines for the management of mealybug in citrus may need to be amended. Consequently, it is proposed that an orchard with a history of carob moth infestation and a high mealybug infestation in the previous season should be subjected to an early season preventative application of a registered control product. Also, if mealybug infestation in December is higher than a 5% of fruit per tree, then a corrective application of a registered product is recommended. The application of 2,4-D at petal drop reduced the size of the navel-end opening, decreasing the proportion of mealybug found in the navel-end, subsequently reducing carob moth infestation, resulting in a direct benefit for producers. Products registered for the control of false codling moth (FCM), Thaumatotibia leucotreta Meyrick, were effective in reducing carob moth infestation. In a spray trial conducted over two seasons, Delegate® and Runner® reduced infestation significantly in the 2014-15 season (over 80%), while only Delegate® was effective in the 2015-16 season (over 80%). If a late season corrective chemical application is targeted at both FCM and carob moth, this application should take place between 6-7 weeks prior to harvest. The mating disruption product, SPLAT® EC, reduced carob moth infestation by 70% compared to the untreated control. A laboratory culture was established and head-capsule size categories were determined for all five carob moth instars. A parasitoid survey indicated that parasitism of carob moth larvae is generally less than 5% in citrus orchards and a new species of Braconidae was described as Phanterotoma carobivora van Achterberg and Thackeray. Carob moth fifth instar were found to be the most cold-tolerant larval stage, and were shown to be more cold susceptible than the most cold-tolerant FCM instars at -0.55ºC for eighteen days. This cold treatment resulted in a mortality of 94.6% fifth instar carob moth compared to a combined fourth and fifth instar mortality of 87.8% for FCM after eighteen days. These results indicate that post-harvest cold treatments targeting FCM will be as, if not more, effective against carob moth, suggesting that current phytosanitary legislation for carob moth should be amended to incorporate this study’s findings.
- Full Text:
- Date Issued: 2017
- Authors: Thackeray, Sean Robin
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/7758 , vital:21293
- Description: The carob moth, Ectomyelois ceratoniae Zeller, is a pest of agricultural commodities and stored products around the world. Carob moth is known to infest citrus in the Mediterranean region and in southern Africa. In grapefruit cultivars, carob moth infestations are associated with high levels of mealybug. However, although this relationship has been observed in other citrus types such as Navel oranges, this has never been quantified. A recent survey of infested fruit from various production areas in South Africa indicated that the pest status of carob moth on Navel oranges may have been underestimated. As a result of the incidental pest status of carob moth on citrus in South Africa in the past, a species specific integrated pest management (IPM) programme does not exist. Therefore, the overriding aim of this theses was to evaluate the pest status of carob moth in citrus and establish a species specific IPM programme by determine the autecology of carob moth in citrus. Reliable methods for monitoring carob moth in citrus orchards both for producers and for research purposes were developed. A user-friendly monitoring method for determining weekly carob moth infestation through dropped fruit was suitable for producers. A timed scouting method was also developed; although the accuracy of this method varied with the experience of the scout. The pest status of carob moth was highest in the Loskop Valley, Nelspruit and the Vaalharts production areas and economic injury to growers ranged from R512.35 to R3 719.80 per hectare as a direct result of infestation. No infestation was recorded in the Sundays River Valley and Citrusdal production areas over both the 2014-15 and 201516 growing seasons. A laboratory study showed the survival of carob moth larvae infesting citrus is less than 10% in the absence of mealybug. However, this increases to almost 40% in the presence of mealybug residues and sooty mould. There was a significant relationship between carob infestation at harvest and mealybug infestation in the middle months of the growing season. The relationship between carob moth and mealybug indicates that current production guidelines for the management of mealybug in citrus may need to be amended. Consequently, it is proposed that an orchard with a history of carob moth infestation and a high mealybug infestation in the previous season should be subjected to an early season preventative application of a registered control product. Also, if mealybug infestation in December is higher than a 5% of fruit per tree, then a corrective application of a registered product is recommended. The application of 2,4-D at petal drop reduced the size of the navel-end opening, decreasing the proportion of mealybug found in the navel-end, subsequently reducing carob moth infestation, resulting in a direct benefit for producers. Products registered for the control of false codling moth (FCM), Thaumatotibia leucotreta Meyrick, were effective in reducing carob moth infestation. In a spray trial conducted over two seasons, Delegate® and Runner® reduced infestation significantly in the 2014-15 season (over 80%), while only Delegate® was effective in the 2015-16 season (over 80%). If a late season corrective chemical application is targeted at both FCM and carob moth, this application should take place between 6-7 weeks prior to harvest. The mating disruption product, SPLAT® EC, reduced carob moth infestation by 70% compared to the untreated control. A laboratory culture was established and head-capsule size categories were determined for all five carob moth instars. A parasitoid survey indicated that parasitism of carob moth larvae is generally less than 5% in citrus orchards and a new species of Braconidae was described as Phanterotoma carobivora van Achterberg and Thackeray. Carob moth fifth instar were found to be the most cold-tolerant larval stage, and were shown to be more cold susceptible than the most cold-tolerant FCM instars at -0.55ºC for eighteen days. This cold treatment resulted in a mortality of 94.6% fifth instar carob moth compared to a combined fourth and fifth instar mortality of 87.8% for FCM after eighteen days. These results indicate that post-harvest cold treatments targeting FCM will be as, if not more, effective against carob moth, suggesting that current phytosanitary legislation for carob moth should be amended to incorporate this study’s findings.
- Full Text:
- Date Issued: 2017
The phenologies of macadamia (Proteaceae) and thrips (Insecta: Thysanoptera) communities in Mpumalanga Province, South Africa
- Authors: Hepburn, Colleen
- Date: 2017
- Subjects: Macadamia nut -- South Africa , Macadamia nut -- Ecology -- South Africa , Macadamia nut -- Diseases and pests -- South Africa , Thrips -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:21183 , http://hdl.handle.net/10962/6817
- Description: Macadamia (Proteaceae) is indigenous to Australia; four of the nine species have been used in plant breeding for cultivation and the production of a rapidly growing product. First introduced to Hawaii in the 1880s, macadamias’ potential as a crop was only really considered in 1910. It is due to the early Hawaiian pioneers’ research and the development of Hawaiian cultivars upon which most of the current world’s production is based today. Prior to the 1980s, cultivation in Australia was based mainly on Hawaiian cultivars. Extensive research has been conducted on cultivar development, performance, best practice, production, crop protection and processing. South Africa has become one of the world’s leading producers and exporters of macadamias. The cultivation of macadamia in South Africa began 80 years ago, but the phenology of macadamia has not been rigorously studied under local conditions, and neither has the thrips communities in macadamia. Data collected during this study on the macadamia phenological stages can be used as a foundation on which seasonal data of all insect pests can be plotted, as a basis on which an extensive Integrated Pest Management (IPM) programme can be developed for the macadamia industry in South Africa. Extensive sampling of thrips communities present in macadamias was undertaken over two years, with more than 142,000 individuals collected. The most basic, common trait into which specimens could be sorted were colour groups. Specimens from each colour group were identified through slide-mounting individuals. Fifteen species of thrips were identified to species-level, excluding specimens from the Panchaetothripinae, Haplothrips and Scolothrips which occurred only periodically. The presence of larvae indicated that macadamia is a host plant for some species. Due to their size and morphology, identification i of the total collection could not be processed to species level using a dissection microscope, although Scirtothrips aurantii Faure were distinguishable from other species and their distribution over the seasons observed. Due to logistical constraints and events beyond the author’s control, the results are mainly qualitative. There seems to be phenological variation within and between cultivars. The date of anthesis and duration of immature nut-drop was estimated; some cultivars set out- of-season flowers and nuts; this “secondary crop” could have far-reaching effects on the implementation of an IPM programme. Comparisons of the phenological data of macadamia and thrips showed the highest abundances and diversity of thrips species occurred when flowers were present. An extensive study of abscised nuts showed no significant difference between most cultivars or at the sites where management practices were implemented and those sites where these practices were not. There was however a consistent difference between the two seasons. There was no difference in maturity of abscised nuts, regardless of whether thrips damage to the husk was present or not. Excessive Bathycoelia distincta (Hemiptera: Pentatomidae) damage was found on the kernels of the abscised nuts processed for maturity testing, which is more likely to have been the primary cause of abscission. The Author’s opinion is that thrips damage to the outer husk does not lead to abscission of maturing nuts. Ascertaining the cause of abscission at nut-set and immature nut-drop is more problematic as there are numerous other potential causes. Damage to new flush, especially the late summer flush essential for the build-up of carbohydrates and resources for the following yield, should be carefully monitored and controlled when necessary.
- Full Text:
- Date Issued: 2017
- Authors: Hepburn, Colleen
- Date: 2017
- Subjects: Macadamia nut -- South Africa , Macadamia nut -- Ecology -- South Africa , Macadamia nut -- Diseases and pests -- South Africa , Thrips -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:21183 , http://hdl.handle.net/10962/6817
- Description: Macadamia (Proteaceae) is indigenous to Australia; four of the nine species have been used in plant breeding for cultivation and the production of a rapidly growing product. First introduced to Hawaii in the 1880s, macadamias’ potential as a crop was only really considered in 1910. It is due to the early Hawaiian pioneers’ research and the development of Hawaiian cultivars upon which most of the current world’s production is based today. Prior to the 1980s, cultivation in Australia was based mainly on Hawaiian cultivars. Extensive research has been conducted on cultivar development, performance, best practice, production, crop protection and processing. South Africa has become one of the world’s leading producers and exporters of macadamias. The cultivation of macadamia in South Africa began 80 years ago, but the phenology of macadamia has not been rigorously studied under local conditions, and neither has the thrips communities in macadamia. Data collected during this study on the macadamia phenological stages can be used as a foundation on which seasonal data of all insect pests can be plotted, as a basis on which an extensive Integrated Pest Management (IPM) programme can be developed for the macadamia industry in South Africa. Extensive sampling of thrips communities present in macadamias was undertaken over two years, with more than 142,000 individuals collected. The most basic, common trait into which specimens could be sorted were colour groups. Specimens from each colour group were identified through slide-mounting individuals. Fifteen species of thrips were identified to species-level, excluding specimens from the Panchaetothripinae, Haplothrips and Scolothrips which occurred only periodically. The presence of larvae indicated that macadamia is a host plant for some species. Due to their size and morphology, identification i of the total collection could not be processed to species level using a dissection microscope, although Scirtothrips aurantii Faure were distinguishable from other species and their distribution over the seasons observed. Due to logistical constraints and events beyond the author’s control, the results are mainly qualitative. There seems to be phenological variation within and between cultivars. The date of anthesis and duration of immature nut-drop was estimated; some cultivars set out- of-season flowers and nuts; this “secondary crop” could have far-reaching effects on the implementation of an IPM programme. Comparisons of the phenological data of macadamia and thrips showed the highest abundances and diversity of thrips species occurred when flowers were present. An extensive study of abscised nuts showed no significant difference between most cultivars or at the sites where management practices were implemented and those sites where these practices were not. There was however a consistent difference between the two seasons. There was no difference in maturity of abscised nuts, regardless of whether thrips damage to the husk was present or not. Excessive Bathycoelia distincta (Hemiptera: Pentatomidae) damage was found on the kernels of the abscised nuts processed for maturity testing, which is more likely to have been the primary cause of abscission. The Author’s opinion is that thrips damage to the outer husk does not lead to abscission of maturing nuts. Ascertaining the cause of abscission at nut-set and immature nut-drop is more problematic as there are numerous other potential causes. Damage to new flush, especially the late summer flush essential for the build-up of carbohydrates and resources for the following yield, should be carefully monitored and controlled when necessary.
- Full Text:
- Date Issued: 2017
The potential of hydrellia egeriae rodrigues (diptera: ephydridae) as a biocontrol agent for egeria densa planch. (hydrocharitaceae) in South Africa
- Authors: Smith, Rosali
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/53733 , vital:26314
- Description: The integrity of South Africa’s valuable freshwater ecosystems has been threatened by aquatic invasive plants since the 1900s. Floating aquatic weeds, such as Eichhornia crassipes (C. Mart) Solms (Pondederiaceae), Pistia stratiotes L. (Araceae), Salvinia molesta D.S. Mitchell (Salviniaceae), Azolla filiculoides Lam. (Azollaceae), and the emergent weed, Myriophyllum aquaticum Verdc. (Haloragaceae) benefited from open, nutrient-rich water bodies. Due to the limitations of mechanical and chemical control in aquatic environments, classical biological control has been a huge asset in managing these weeds; consequently bringing them under complete or substantial control. However, submerged aquatic weeds are widely distributed through the aquarium trade in South Africa; facilitating their invasion into new habitats. The removal of surface mats following the successful management of floating weeds has enhanced the growth and competitive ability of submerged aquatic weeds, such as Hydrilla verticillata (L.f.) Royle (Hydrocharitaceae), Myriophyllum spicatum L. (Haloragaceae) and Egeria densa Planch. (Hydrocharitaceae) in South Africa. Of these species, E. densa has become the most widely distributed, invading numerous systems across South Africa. Compared to other exotic submerged aquatic plants, E. densa is the only species capable of inhabiting freshwater systems in every province and therefore, it is vital to manage existing populations and prevent its further distribution and invasion. Hydrellia spp. (Diptera: Ephydridae) biological control agents have been used extensively in the management of submerged aquatic weeds elsewhere, particularly those in the Hydrocharitaceae (Balciunas and Burrows 1996; Wheeler and Center 2001. Hydrellia egeriae Rodrigues (Diptera: Ephydridae) has been identified as a promising candidate for E. densa and was imported into quarantine at Rhodes University, Grahamstown in 2014. The aims of this study were to conduct a pre-release assessment of the potential of H. egeriae as a biological control agent for E. densa in South Africa. The first objective of this study was to establish the life history of the agent under controlled conditions on E. densa found in South Africa, as well as its population growth parameters to predict its invasion success in the field. Secondly, laboratory host-specificity testing was conducted to validate the host range of the agent, in view of published native range host-specificity testing, and to establish potential risks to non-target species, should it be released. Finally, a biological control agent should also effectively reduce the fitness of its host plant, and therefore, impact studies were conducted. Laboratory impact studies have been limited in the past, in that they only investigate agent damage for short ecological periods, thus underestimating the damage capacity of the agent under investigation. Therefore, the damage capacity of H. egeriae was investigated over three consecutive generations in multi-generational impact trials. In a controlled environment of 22 ± 2°C, H. egeriae exhibited the ability to rapidly increase in population size within a short period of time, which will enhance agent establishment and build-up in the field. Host-specificity trials indicated that H. egeriae has a host range restricted to the Hydrocharitaceae, with exploratory feeding and development on Lagarosiphon major Ridley, L. muscoides Harvey and Vallisneria spiralis L. However, only L. major supported agent development during paired larval choice tests, and continuation trials showed that the test species was not physiologically capable of supporting viable agent populations. Risk analysis illustrated that the feeding and reproductive risks that H. egeriae pose to non-target species are very low and therefore, H. egeriae should be safe for release in South Africa. Additionally, significant damage to vital plant structures (shoot growth and side shoot length) was only recorded under high (five larvae) agent abundances. Encouragingly, the number of leaves mined at the end of the experiment was similar for both intermediate (three) and high (five) larval abundances, suggesting that cumulative leaf-mining under intermediate larval abundances has the potential to reduce the fitness of E. densa, given sufficient time. Results from pre-release assessments provide a robust understanding of the specialization of the potential biological control agent to its host plant. Nevertheless, the absolute success of a biological control programme depends on the many factors after prerelease assessments that determine agent establishment, persistence and target weed suppression, e.g. mass-rearing, release protocols and a/biotic factors within the recipient community. Considering these factors, the best mass-rearing and release protocols are proposed here and future research priorities are identified. Finally, the long term success for managing E. densa in South Africa will require a holistic approach to address the underlying factors, such as eutrophication and human-mediated distribution that drive submerged aquatic plant invasions.
- Full Text:
- Date Issued: 2017
- Authors: Smith, Rosali
- Date: 2017
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/53733 , vital:26314
- Description: The integrity of South Africa’s valuable freshwater ecosystems has been threatened by aquatic invasive plants since the 1900s. Floating aquatic weeds, such as Eichhornia crassipes (C. Mart) Solms (Pondederiaceae), Pistia stratiotes L. (Araceae), Salvinia molesta D.S. Mitchell (Salviniaceae), Azolla filiculoides Lam. (Azollaceae), and the emergent weed, Myriophyllum aquaticum Verdc. (Haloragaceae) benefited from open, nutrient-rich water bodies. Due to the limitations of mechanical and chemical control in aquatic environments, classical biological control has been a huge asset in managing these weeds; consequently bringing them under complete or substantial control. However, submerged aquatic weeds are widely distributed through the aquarium trade in South Africa; facilitating their invasion into new habitats. The removal of surface mats following the successful management of floating weeds has enhanced the growth and competitive ability of submerged aquatic weeds, such as Hydrilla verticillata (L.f.) Royle (Hydrocharitaceae), Myriophyllum spicatum L. (Haloragaceae) and Egeria densa Planch. (Hydrocharitaceae) in South Africa. Of these species, E. densa has become the most widely distributed, invading numerous systems across South Africa. Compared to other exotic submerged aquatic plants, E. densa is the only species capable of inhabiting freshwater systems in every province and therefore, it is vital to manage existing populations and prevent its further distribution and invasion. Hydrellia spp. (Diptera: Ephydridae) biological control agents have been used extensively in the management of submerged aquatic weeds elsewhere, particularly those in the Hydrocharitaceae (Balciunas and Burrows 1996; Wheeler and Center 2001. Hydrellia egeriae Rodrigues (Diptera: Ephydridae) has been identified as a promising candidate for E. densa and was imported into quarantine at Rhodes University, Grahamstown in 2014. The aims of this study were to conduct a pre-release assessment of the potential of H. egeriae as a biological control agent for E. densa in South Africa. The first objective of this study was to establish the life history of the agent under controlled conditions on E. densa found in South Africa, as well as its population growth parameters to predict its invasion success in the field. Secondly, laboratory host-specificity testing was conducted to validate the host range of the agent, in view of published native range host-specificity testing, and to establish potential risks to non-target species, should it be released. Finally, a biological control agent should also effectively reduce the fitness of its host plant, and therefore, impact studies were conducted. Laboratory impact studies have been limited in the past, in that they only investigate agent damage for short ecological periods, thus underestimating the damage capacity of the agent under investigation. Therefore, the damage capacity of H. egeriae was investigated over three consecutive generations in multi-generational impact trials. In a controlled environment of 22 ± 2°C, H. egeriae exhibited the ability to rapidly increase in population size within a short period of time, which will enhance agent establishment and build-up in the field. Host-specificity trials indicated that H. egeriae has a host range restricted to the Hydrocharitaceae, with exploratory feeding and development on Lagarosiphon major Ridley, L. muscoides Harvey and Vallisneria spiralis L. However, only L. major supported agent development during paired larval choice tests, and continuation trials showed that the test species was not physiologically capable of supporting viable agent populations. Risk analysis illustrated that the feeding and reproductive risks that H. egeriae pose to non-target species are very low and therefore, H. egeriae should be safe for release in South Africa. Additionally, significant damage to vital plant structures (shoot growth and side shoot length) was only recorded under high (five larvae) agent abundances. Encouragingly, the number of leaves mined at the end of the experiment was similar for both intermediate (three) and high (five) larval abundances, suggesting that cumulative leaf-mining under intermediate larval abundances has the potential to reduce the fitness of E. densa, given sufficient time. Results from pre-release assessments provide a robust understanding of the specialization of the potential biological control agent to its host plant. Nevertheless, the absolute success of a biological control programme depends on the many factors after prerelease assessments that determine agent establishment, persistence and target weed suppression, e.g. mass-rearing, release protocols and a/biotic factors within the recipient community. Considering these factors, the best mass-rearing and release protocols are proposed here and future research priorities are identified. Finally, the long term success for managing E. densa in South Africa will require a holistic approach to address the underlying factors, such as eutrophication and human-mediated distribution that drive submerged aquatic plant invasions.
- Full Text:
- Date Issued: 2017
Aquatic–terrestrial trophic linkages via riverine invertebrates in a South African catchment
- Authors: Moyo, Sydney
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/54427 , vital:26564
- Description: Rivers play a vital role in human livelihoods and are likely to undergo substantial alteration due to climate and land use changes from an increasing human population. Mitigating the pressures facing rivers in the world requires scientists and environmental managers to understand the ecological mechanisms, and ultimately the strength, of connections between ecosystems. This understanding of connections between adjacent habitats will enable environmental managers to predict the consequences of perturbing these linkages in the future. In this thesis, aquatic-terrestrial linkages in rivers were investigated using ecologically meaningful variables including abundances, biomasses, stable isotopes and fatty acids. This study is part of a larger project entitled “Connectivity through allochthony: reciprocal links between adjacent aquatic and terrestrial ecosystems in South Africa”, in which a team of researchers assessed a variety of pathways connecting riverine and estuarine systems to land within a catchment in the Eastern Cape, South Africa. I conceptualised the flow of energy within a temperate southern hemisphere river (the Kowie River) within theoretical models of energy flow such as the River Continuum Concept (RCC; presents lotic systems as being longitudinally linked with food webs in shaded headwaters being principally driven by allochthonous energy, with the addition of autochthonous food as a minor carbon source in the lower reaches) and the Riverine Productivity Model (RPM; proposes consumers derive most of their energy from local production of phytoplankton, benthic algae and aquatic plants, as well as directly from riparian zones via terrestrial leaf litter). Using the RCC as a starting point, I collected macroinvertebrates (September 2012 to May 2013) along a longitudinal gradient and grouped them into functional feeding groups (FFGs). The results revealed that gatherers and filterers dominated in the Kowie River, and together represented 50 – 83% of the invertebrate assemblages. There was a general paucity of shredders (relative abundance was ≤ 10% across all sites and seasons). The changes in relative abundances of different FFGs did not follow predictions of the RCC along the longitudinal gradient, as there were no correlations of community structure with some physical attributes (stream width, canopy cover, distance of river) that changed along the river continuum. However, FFG abundances were related to water velocity, total dissolved solids and canopy cover. Broadly, the Kowie River data showed that changes in relative abundances of FFGs along the river continuum could not be explained by changes in physical attributes alone, and may be highly influenced by the availability of food and the chemistry of the stream. Analysis of stable carbon (δ13C) and nitrogen (δ15N) isotopes was used to estimate the contributions of algal and land-based production to consumers over space (six sites) and time (November 2012 to September 2013). Carbon contributions determined by the use of mixing models (Stable Isotope Analysis in R) revealed that consumers in the headwater assimilated mainly terrestrially-derived organic matter, with consumers in the middle and lower reaches assimilating autochthonous basal resources (macrophytes and algae). The findings from this river supported aspects of the RCC (at the headwaters; terrestrial organic matter made up 41% of consumer diets), but overall the data supported the predictions of the RPM (local production made the highest contributions of 50 – 86% to all FFGs across all seasons). The carbon isotopes of consumers and their food sources changed substantially every season, indicating that samples of food sources and consumers should be analysed many times throughout the year to capture that variability and to ensure that ephemeral components of the food web are not missed. To validate the findings from the isotope data, fatty acids were used as complementary tracers to determine the contributions of algal versus terrestrial organic matter to the consumers. Fatty acid tracers for terrestrial (Ʃω3/Ʃω6; 18:2ω6; 18:3ω3) vs aquatic (Ʃω3/Ʃω6; 20:5ω3) sources corroborated the findings from the isotope data set, as the mean ratio of Ʃω3/Ʃω6 in consumers was less than one at the headwaters (indicating allochthony), while middle and lower reaches were associated with Ʃω3/Ʃω6 > 1 (indicating autochthony). In addition to the tracer and FFG analyses for examining trophic connections between land and river, the bidirectional exchange of organisms between the riparian zone and the river was assessed using floating pyramidal traps (to measure emergence) and pan traps (for infalling invertebrates) placed at different sites in the river and the biomass in each trap was determined. The exchanges were variable over space and time, with emergence peaking in summer (169 to 1402 mg m-2 day-1) and declining in winter (3 to 28 mg m-2 day-1). Similarly, infalling invertebrates increased in summer (413 to 679 mg m-2 day-1) and declined in winter (11 to 220 mg m-2 day-1). Biomass measurements are indications of quantity that ignore nutritional quality, so I determined the bidirectional flow of invertebrates using absolute concentrations of physiologically important biochemical compounds (essential and polyunsaturated fatty acids). The fluxes of emergent and infalling arthropods peaked in summer (emergence = 0.3 to 18 mg m-2 day-1 and terrestrial infall = 0.3 to 3 mg m-2 day-1) and declined in winter (emergence = 0.01 to 0.51 mg m-2 day-1 and terrestrial infall = 0.01 to 0.03 mg m-2 day-1). However, during some seasons, no significant differences in polyunsaturated fatty acid flux in either direction were observed; this finding indicated the balance of reciprocal subsidisation via reciprocal flows of animals. Factors such as air temperature and algal productivity affected the reciprocal flows between adjacent habitats, with algal productivity being positively related to emergence while air temperature was positively correlated to infalling terrestrial invertebrates. This research enhances the growing body of literature on the function of riverine systems and offers some invaluable information on the flow of energy and the role played by invertebrates in translocating nutrients from terrestrial systems to aquatic systems and vice versa. This study unifies the concepts of the RCC and RPM and shows that these concepts are not limited only to large rivers, but are applicable to small southern temperate rivers too. However, some tenets of the theoretical models were challenged. For example, it challenges the proposition by the RCC that the fine particulate organic matter leaked from upstream breakdown of coarse particulate organic matter is predominantly allochthonous. Additionally, this study showed that in the headwaters, the RPM underestimated the role of autochthony. Overall, the results showed that the Kowie River and its riparian area are intrinsically connected. Once we understand the mechanisms controlling connections and subsidies across ecotones, we can then start to predict the consequences of disruptions to these connections by climate change and/or land use changes. To make predictions about future perturbations to rivers and riparian zones, studies like this, which considers the form and magnitude of subsidies, are needed to provide baseline information. Algal resources (e.g. epiphyton), macrophytes, riparian plants, terrestrial organisms and aquatic organisms all contributed to aquatic and terrestrial linkages in the Kowie River; therefore, it is important to conserve the different components of these ecosystems.
- Full Text:
- Date Issued: 2016
- Authors: Moyo, Sydney
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/54427 , vital:26564
- Description: Rivers play a vital role in human livelihoods and are likely to undergo substantial alteration due to climate and land use changes from an increasing human population. Mitigating the pressures facing rivers in the world requires scientists and environmental managers to understand the ecological mechanisms, and ultimately the strength, of connections between ecosystems. This understanding of connections between adjacent habitats will enable environmental managers to predict the consequences of perturbing these linkages in the future. In this thesis, aquatic-terrestrial linkages in rivers were investigated using ecologically meaningful variables including abundances, biomasses, stable isotopes and fatty acids. This study is part of a larger project entitled “Connectivity through allochthony: reciprocal links between adjacent aquatic and terrestrial ecosystems in South Africa”, in which a team of researchers assessed a variety of pathways connecting riverine and estuarine systems to land within a catchment in the Eastern Cape, South Africa. I conceptualised the flow of energy within a temperate southern hemisphere river (the Kowie River) within theoretical models of energy flow such as the River Continuum Concept (RCC; presents lotic systems as being longitudinally linked with food webs in shaded headwaters being principally driven by allochthonous energy, with the addition of autochthonous food as a minor carbon source in the lower reaches) and the Riverine Productivity Model (RPM; proposes consumers derive most of their energy from local production of phytoplankton, benthic algae and aquatic plants, as well as directly from riparian zones via terrestrial leaf litter). Using the RCC as a starting point, I collected macroinvertebrates (September 2012 to May 2013) along a longitudinal gradient and grouped them into functional feeding groups (FFGs). The results revealed that gatherers and filterers dominated in the Kowie River, and together represented 50 – 83% of the invertebrate assemblages. There was a general paucity of shredders (relative abundance was ≤ 10% across all sites and seasons). The changes in relative abundances of different FFGs did not follow predictions of the RCC along the longitudinal gradient, as there were no correlations of community structure with some physical attributes (stream width, canopy cover, distance of river) that changed along the river continuum. However, FFG abundances were related to water velocity, total dissolved solids and canopy cover. Broadly, the Kowie River data showed that changes in relative abundances of FFGs along the river continuum could not be explained by changes in physical attributes alone, and may be highly influenced by the availability of food and the chemistry of the stream. Analysis of stable carbon (δ13C) and nitrogen (δ15N) isotopes was used to estimate the contributions of algal and land-based production to consumers over space (six sites) and time (November 2012 to September 2013). Carbon contributions determined by the use of mixing models (Stable Isotope Analysis in R) revealed that consumers in the headwater assimilated mainly terrestrially-derived organic matter, with consumers in the middle and lower reaches assimilating autochthonous basal resources (macrophytes and algae). The findings from this river supported aspects of the RCC (at the headwaters; terrestrial organic matter made up 41% of consumer diets), but overall the data supported the predictions of the RPM (local production made the highest contributions of 50 – 86% to all FFGs across all seasons). The carbon isotopes of consumers and their food sources changed substantially every season, indicating that samples of food sources and consumers should be analysed many times throughout the year to capture that variability and to ensure that ephemeral components of the food web are not missed. To validate the findings from the isotope data, fatty acids were used as complementary tracers to determine the contributions of algal versus terrestrial organic matter to the consumers. Fatty acid tracers for terrestrial (Ʃω3/Ʃω6; 18:2ω6; 18:3ω3) vs aquatic (Ʃω3/Ʃω6; 20:5ω3) sources corroborated the findings from the isotope data set, as the mean ratio of Ʃω3/Ʃω6 in consumers was less than one at the headwaters (indicating allochthony), while middle and lower reaches were associated with Ʃω3/Ʃω6 > 1 (indicating autochthony). In addition to the tracer and FFG analyses for examining trophic connections between land and river, the bidirectional exchange of organisms between the riparian zone and the river was assessed using floating pyramidal traps (to measure emergence) and pan traps (for infalling invertebrates) placed at different sites in the river and the biomass in each trap was determined. The exchanges were variable over space and time, with emergence peaking in summer (169 to 1402 mg m-2 day-1) and declining in winter (3 to 28 mg m-2 day-1). Similarly, infalling invertebrates increased in summer (413 to 679 mg m-2 day-1) and declined in winter (11 to 220 mg m-2 day-1). Biomass measurements are indications of quantity that ignore nutritional quality, so I determined the bidirectional flow of invertebrates using absolute concentrations of physiologically important biochemical compounds (essential and polyunsaturated fatty acids). The fluxes of emergent and infalling arthropods peaked in summer (emergence = 0.3 to 18 mg m-2 day-1 and terrestrial infall = 0.3 to 3 mg m-2 day-1) and declined in winter (emergence = 0.01 to 0.51 mg m-2 day-1 and terrestrial infall = 0.01 to 0.03 mg m-2 day-1). However, during some seasons, no significant differences in polyunsaturated fatty acid flux in either direction were observed; this finding indicated the balance of reciprocal subsidisation via reciprocal flows of animals. Factors such as air temperature and algal productivity affected the reciprocal flows between adjacent habitats, with algal productivity being positively related to emergence while air temperature was positively correlated to infalling terrestrial invertebrates. This research enhances the growing body of literature on the function of riverine systems and offers some invaluable information on the flow of energy and the role played by invertebrates in translocating nutrients from terrestrial systems to aquatic systems and vice versa. This study unifies the concepts of the RCC and RPM and shows that these concepts are not limited only to large rivers, but are applicable to small southern temperate rivers too. However, some tenets of the theoretical models were challenged. For example, it challenges the proposition by the RCC that the fine particulate organic matter leaked from upstream breakdown of coarse particulate organic matter is predominantly allochthonous. Additionally, this study showed that in the headwaters, the RPM underestimated the role of autochthony. Overall, the results showed that the Kowie River and its riparian area are intrinsically connected. Once we understand the mechanisms controlling connections and subsidies across ecotones, we can then start to predict the consequences of disruptions to these connections by climate change and/or land use changes. To make predictions about future perturbations to rivers and riparian zones, studies like this, which considers the form and magnitude of subsidies, are needed to provide baseline information. Algal resources (e.g. epiphyton), macrophytes, riparian plants, terrestrial organisms and aquatic organisms all contributed to aquatic and terrestrial linkages in the Kowie River; therefore, it is important to conserve the different components of these ecosystems.
- Full Text:
- Date Issued: 2016
Assessing the impact of climate change on mangrove crabs: the role of ontogenetic macrophysiology and settlement in the persistence of central and marginal populations
- Authors: Mostert, Bruce Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/826 , vital:19994
- Description: After a brief respite in the mid to late 20th century, macro physiology has come to the fore in elucidating large scale ecological patterns and processes as physiological assumptions often form the backbone of many predictive theories associated with species distributions. Critically, macro physiological patterns are valuable in explaining physiological variation across multiple scales and provide insights into the effects of climate change on populations spanning a wide range of latitudes. This can assist in predicting possible distribution expansions, contractions or shifts in light of current climate change scenarios. From this perspective, investigating intra- and inter-specific physiological responses to environmental stress may contribute to better understanding and predicting the effects of climate change on geographical ranges. Further, investigating the physiological effects to environmental stresses across ontogenetic stages allows for the identification of weak links within the lifecycle of a species. Additionally, determining settlement characteristics along a latitudinal cline provides integrated indications of the sustainability of populations, highlighting vulnerable regions in terms of repopulation of viable habitats. In this context, the present study aimed at establishing how temperature, in a physiological context, may affect reproductive biology of two species of mangrove crab, Perisesarma guttatum and Uca urvillei at the centre (Kenya) and edge (South Africa) of their distributional range along the east coast of Africa and highlight possible consequences for range distributions. A third species, Neosarmatium africanum, only in South Africa, was included to provide additional interspecies comparisons. Furthermore, settlement characteristics of brachyuran populations at the centre and edge of their distributional range were considered in order to determine how settlement may contribute to population persistence. Physiological investigations at the centre and edge of distributional range and across ontogenetic stages (larvae, stage 2 and 4 embryos, non-gravid and gravid females) under the concept of oxygen and capacity limitation of thermal tolerance (OCLTT), revealed that, for both species, populations at the centre of their distribution (Kenya) were generally more robust to increasing temperatures and generally displayed greater physiological stability with increasing temperatures compared to their conspecifics in South Africa. Variability in physiological robustness between regions, did however, differ among ontogenetic stages and species but, overall, were evident throughout. Within and between regions, adaptation to oxygen extraction in both milieus (air or water) was displayed for present temperature conditions but aerial respiration largely alleviated increased thermal stress due to overcoming the limitations of reduced oxygen availability and diffusiveness in water for all bimodal ontogenetic stages. Brooding eggs proved to be a physiologically critical process with either heighted oxygen consumption for gravid females or collapse of physiological processes demonstrated by supressed oxygen consumption. The physiological cost of brooding eggs, referred to as maternal costs, was reflected in in both Perisesarma guttatum and Uca urvillei where, in most cases, maternal costs were negative. Again, aerial respiration was able to alleviated increased thermal stress, as shown by positive maternal costs indicating sustained maternal care, but this mechanism was species and regionally specific. Settlement patterns differed between the edge and centre of distribution of the species studied. This difference was predominantly driven by zonal preference within the mangal and/or effects of new and full moon (lunar phase). Overall, settlement dynamics were more widely variable in South Africa, both spatially and temporally, than in Kenya. Finally, empirical physiological data from ontogenetic stages present during the reproductive process (early and late stage embryos) and from non-gravid and gravid females were used in conjunction with data mined from the existing literature to parameterise an individual based model designed to simulate reproductive output at the centre and edge of distribution of Perisesarma guttatum. Physiological data indicate that, in terms of reproductive output across increasing temperatures, populations based at the centre of their distribution presently outperform their counterparts at the edge of the species’ distribution, but reproductive output stagnated as temperature rose. Edge of distribution populations consistently increased reproductive output with increasing temperatures to eventually outperform centre of distribution populations at higher simulated temperatures. Overall, results of the physiological and settlement studies suggest that with increased climate change there may be a contraction of distributional range of the study species from high latitudes to low latitudes, contrary to general poleward shifts/migrations seen in most species, with possible contractions of the entire ecosystem mirroring the disappearance of keystone mangrove macrofauna.
- Full Text:
- Date Issued: 2016
- Authors: Mostert, Bruce Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/826 , vital:19994
- Description: After a brief respite in the mid to late 20th century, macro physiology has come to the fore in elucidating large scale ecological patterns and processes as physiological assumptions often form the backbone of many predictive theories associated with species distributions. Critically, macro physiological patterns are valuable in explaining physiological variation across multiple scales and provide insights into the effects of climate change on populations spanning a wide range of latitudes. This can assist in predicting possible distribution expansions, contractions or shifts in light of current climate change scenarios. From this perspective, investigating intra- and inter-specific physiological responses to environmental stress may contribute to better understanding and predicting the effects of climate change on geographical ranges. Further, investigating the physiological effects to environmental stresses across ontogenetic stages allows for the identification of weak links within the lifecycle of a species. Additionally, determining settlement characteristics along a latitudinal cline provides integrated indications of the sustainability of populations, highlighting vulnerable regions in terms of repopulation of viable habitats. In this context, the present study aimed at establishing how temperature, in a physiological context, may affect reproductive biology of two species of mangrove crab, Perisesarma guttatum and Uca urvillei at the centre (Kenya) and edge (South Africa) of their distributional range along the east coast of Africa and highlight possible consequences for range distributions. A third species, Neosarmatium africanum, only in South Africa, was included to provide additional interspecies comparisons. Furthermore, settlement characteristics of brachyuran populations at the centre and edge of their distributional range were considered in order to determine how settlement may contribute to population persistence. Physiological investigations at the centre and edge of distributional range and across ontogenetic stages (larvae, stage 2 and 4 embryos, non-gravid and gravid females) under the concept of oxygen and capacity limitation of thermal tolerance (OCLTT), revealed that, for both species, populations at the centre of their distribution (Kenya) were generally more robust to increasing temperatures and generally displayed greater physiological stability with increasing temperatures compared to their conspecifics in South Africa. Variability in physiological robustness between regions, did however, differ among ontogenetic stages and species but, overall, were evident throughout. Within and between regions, adaptation to oxygen extraction in both milieus (air or water) was displayed for present temperature conditions but aerial respiration largely alleviated increased thermal stress due to overcoming the limitations of reduced oxygen availability and diffusiveness in water for all bimodal ontogenetic stages. Brooding eggs proved to be a physiologically critical process with either heighted oxygen consumption for gravid females or collapse of physiological processes demonstrated by supressed oxygen consumption. The physiological cost of brooding eggs, referred to as maternal costs, was reflected in in both Perisesarma guttatum and Uca urvillei where, in most cases, maternal costs were negative. Again, aerial respiration was able to alleviated increased thermal stress, as shown by positive maternal costs indicating sustained maternal care, but this mechanism was species and regionally specific. Settlement patterns differed between the edge and centre of distribution of the species studied. This difference was predominantly driven by zonal preference within the mangal and/or effects of new and full moon (lunar phase). Overall, settlement dynamics were more widely variable in South Africa, both spatially and temporally, than in Kenya. Finally, empirical physiological data from ontogenetic stages present during the reproductive process (early and late stage embryos) and from non-gravid and gravid females were used in conjunction with data mined from the existing literature to parameterise an individual based model designed to simulate reproductive output at the centre and edge of distribution of Perisesarma guttatum. Physiological data indicate that, in terms of reproductive output across increasing temperatures, populations based at the centre of their distribution presently outperform their counterparts at the edge of the species’ distribution, but reproductive output stagnated as temperature rose. Edge of distribution populations consistently increased reproductive output with increasing temperatures to eventually outperform centre of distribution populations at higher simulated temperatures. Overall, results of the physiological and settlement studies suggest that with increased climate change there may be a contraction of distributional range of the study species from high latitudes to low latitudes, contrary to general poleward shifts/migrations seen in most species, with possible contractions of the entire ecosystem mirroring the disappearance of keystone mangrove macrofauna.
- Full Text:
- Date Issued: 2016
Community structure and trophic ecology of shallow and deep rocky reefs in a well-established marine protected area
- Authors: Heyns, Elodie R
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/54438 , vital:26565
- Description: The now formally adopted ecosystem approach to fisheries (EAF) considers not only commercially important species, but the entire ecosystem and the processes that support these species. A key component of EAF management is the implementation of no-take Marine Protected Areas (MPAs). Shallow water fish stocks are depleted and fishing effort is moving deeper and further offshore to keep up with demands. This situation calls for a detailed investigation of deep nearshore reefs to provide critical information relevant to policy uptake and management decisions regarding existing and new MPAs in terms of zonation and use. To address this need, the aim of this thesis was to investigate reefs that lie between 45 and 75 m and compare them in terms of community structure and function to the relatively well-studied shallow reefs that lie within SCUBA diving depth (<25 m). Ecological collections were made in the centre of a large and well-established MPA, Tsitsikamma National Park, to ensure that data represented non-anthropogenically impacted communities. Data were collected from two study sites; Rheeders Reef, (shallow reef) and Middlebank, a deep reef complex situated near the Storms River Mouth. The first step to address the aim of this study was to obtain baseline data on the distribution patterns of both the macrobenthic invertebrates and fish assemblages. Baseline data were obtained by underwater video methods and included the use of a remotely operated vehicle, baited remote underwater stereo-video systems (stereo-BRUVs) and traditional underwater camera equipment operated by SCUBA divers. To establish functional differences between the two study sites, fatty acid (FA) and stable isotope (SI) analyses were employed. These biomarker techniques provided insight into the importance of different sources of primary production, nutritional condition and species packing. From 360 photoquadrats examined for macrobenthic invertebrate distribution patterns, 161 invertebrates were identified that demonstrated a clear changeover of species along the depth gradient. Species richness was highest on the shallow reef and decreased with an increase in depth. To understand how the measured environmental variables impacted the macrobenthic assemblage data a LINKTREE analysis was performed. LINKTREEs produce hierarchical cluster analysis based on the macrobenthic assemblage data and provide a threshold of environmental variables that correspond to each cluster. The outcome of the LINKTREE analysis indicated that the changeover of species resulted in four distinct clusters, each cluster associated with a particular set of environmental variables that fell within a depth range. On the shallowest sites, the high energy environment resulting from wave action and surge prevented the settlement of suspended particles. The high energy environment of the shallow reef selected for low-growing encrusting species. High light intensities supported great abundances of benthic algae, and as light was lost with increasing depth, algal cover gradually diminished until it was completely absent on the deep reef. The reduced impact of surface wave action on the deep reef caused increased levels of settled suspended particles. The high levels of settled particles likely caused clogging of feeding parts of the encrusting species. Consequently, upright growth forms were more common in the lower energy environment of the deep reef. A total of 48 fish species were identified from 51 stereo-BRUVs samples. Fish assemblages differed significantly between the shallow and deep reefs. The shallowest sites were characterised by many small and juvenile fish species that fed at lower trophic levels. The deep reef supported the majority of the large predatory fish that fed at higher trophic levels. Many species demonstrated depth-related ontogenetic shifts in habitat use, and as such the deep reef hosted the majority of the sexually mature individuals. The fish assemblages also demonstrated a strong association with the macrobenthic clusters identified as habitat types by the LINKTREE analysis. The results from 201 FA and 191 SI samples provided information on specific feeding interactions, but more importantly shed some light on different processes that supported the shallow and deep reef communities. The shallow reef community was characterised by greater diversity of food sources, a pattern that could be explained by the presence of benthic algae and terrestrial inputs. Greater diversity of carbon sources at the bottom of the food web meant that a larger variety of species could be supported. Higher species richness increased the number of distinct taxa that performed similar functions, rendering the shallow reef more redundant and consequently more resilient to disturbance. In contrast, the deep reef demonstrated a food web supported mainly by pelagic production, which was more variable both over space and time. The deep reef was less redundant when compared to the shallow reef, as fewer species demonstrated similar trophic niches. These factors, in addition to the increased presence of sensitive calcareous macrobenthic species on the deep study site, rendered the deep reef more vulnerable to disturbance when compared to the shallow reef. Although the data presented here were from a single study area, the limitations typically associated with these inaccessible and challenging sampling environments made the dataset a significant contribution to the knowledge of reef ecosystems. The study addressed priority research questions for South Africa as identified during the National Biodiversity Assessment. The observable differences in structure, function and vulnerability point to the need for continued protection of our shallow reefs and offshore expansion of our MPA networks. Future research should determine if the patterns identified here are common throughout the Agulhas Ecoregion to provide managers with robust evidence for the extension our MPAs offshore.
- Full Text:
- Date Issued: 2016
- Authors: Heyns, Elodie R
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/54438 , vital:26565
- Description: The now formally adopted ecosystem approach to fisheries (EAF) considers not only commercially important species, but the entire ecosystem and the processes that support these species. A key component of EAF management is the implementation of no-take Marine Protected Areas (MPAs). Shallow water fish stocks are depleted and fishing effort is moving deeper and further offshore to keep up with demands. This situation calls for a detailed investigation of deep nearshore reefs to provide critical information relevant to policy uptake and management decisions regarding existing and new MPAs in terms of zonation and use. To address this need, the aim of this thesis was to investigate reefs that lie between 45 and 75 m and compare them in terms of community structure and function to the relatively well-studied shallow reefs that lie within SCUBA diving depth (<25 m). Ecological collections were made in the centre of a large and well-established MPA, Tsitsikamma National Park, to ensure that data represented non-anthropogenically impacted communities. Data were collected from two study sites; Rheeders Reef, (shallow reef) and Middlebank, a deep reef complex situated near the Storms River Mouth. The first step to address the aim of this study was to obtain baseline data on the distribution patterns of both the macrobenthic invertebrates and fish assemblages. Baseline data were obtained by underwater video methods and included the use of a remotely operated vehicle, baited remote underwater stereo-video systems (stereo-BRUVs) and traditional underwater camera equipment operated by SCUBA divers. To establish functional differences between the two study sites, fatty acid (FA) and stable isotope (SI) analyses were employed. These biomarker techniques provided insight into the importance of different sources of primary production, nutritional condition and species packing. From 360 photoquadrats examined for macrobenthic invertebrate distribution patterns, 161 invertebrates were identified that demonstrated a clear changeover of species along the depth gradient. Species richness was highest on the shallow reef and decreased with an increase in depth. To understand how the measured environmental variables impacted the macrobenthic assemblage data a LINKTREE analysis was performed. LINKTREEs produce hierarchical cluster analysis based on the macrobenthic assemblage data and provide a threshold of environmental variables that correspond to each cluster. The outcome of the LINKTREE analysis indicated that the changeover of species resulted in four distinct clusters, each cluster associated with a particular set of environmental variables that fell within a depth range. On the shallowest sites, the high energy environment resulting from wave action and surge prevented the settlement of suspended particles. The high energy environment of the shallow reef selected for low-growing encrusting species. High light intensities supported great abundances of benthic algae, and as light was lost with increasing depth, algal cover gradually diminished until it was completely absent on the deep reef. The reduced impact of surface wave action on the deep reef caused increased levels of settled suspended particles. The high levels of settled particles likely caused clogging of feeding parts of the encrusting species. Consequently, upright growth forms were more common in the lower energy environment of the deep reef. A total of 48 fish species were identified from 51 stereo-BRUVs samples. Fish assemblages differed significantly between the shallow and deep reefs. The shallowest sites were characterised by many small and juvenile fish species that fed at lower trophic levels. The deep reef supported the majority of the large predatory fish that fed at higher trophic levels. Many species demonstrated depth-related ontogenetic shifts in habitat use, and as such the deep reef hosted the majority of the sexually mature individuals. The fish assemblages also demonstrated a strong association with the macrobenthic clusters identified as habitat types by the LINKTREE analysis. The results from 201 FA and 191 SI samples provided information on specific feeding interactions, but more importantly shed some light on different processes that supported the shallow and deep reef communities. The shallow reef community was characterised by greater diversity of food sources, a pattern that could be explained by the presence of benthic algae and terrestrial inputs. Greater diversity of carbon sources at the bottom of the food web meant that a larger variety of species could be supported. Higher species richness increased the number of distinct taxa that performed similar functions, rendering the shallow reef more redundant and consequently more resilient to disturbance. In contrast, the deep reef demonstrated a food web supported mainly by pelagic production, which was more variable both over space and time. The deep reef was less redundant when compared to the shallow reef, as fewer species demonstrated similar trophic niches. These factors, in addition to the increased presence of sensitive calcareous macrobenthic species on the deep study site, rendered the deep reef more vulnerable to disturbance when compared to the shallow reef. Although the data presented here were from a single study area, the limitations typically associated with these inaccessible and challenging sampling environments made the dataset a significant contribution to the knowledge of reef ecosystems. The study addressed priority research questions for South Africa as identified during the National Biodiversity Assessment. The observable differences in structure, function and vulnerability point to the need for continued protection of our shallow reefs and offshore expansion of our MPA networks. Future research should determine if the patterns identified here are common throughout the Agulhas Ecoregion to provide managers with robust evidence for the extension our MPAs offshore.
- Full Text:
- Date Issued: 2016