Investigation of α-aryl substituted 3-indolylethanones as potential antiplasmodial agents
- Authors: Svogie, Archibald Lesley
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MPharm
- Identifier: http://hdl.handle.net/10962/55487 , vital:26704
- Description: According to the World Health Organisation (WHO), deaths attributed to Plasmodium falciparum exceeded 584 000 in 2013, with 198 million new cases of malaria being reported. One contributing factor to these alarming figures is the emergence of drug resistance against available antimalarial agents. Therefore, there is a pressing need to develop new therapeutic antimalarial drugs with novel mechanisms of action in order to curb the increasing spread of malaria. The indole scaffold is often associated with biologically active compounds, recently exemplified by the antimalarial agent NITD609, which is currently in phase 1 clinical trials. Based on the biological evaluation of a small series of indolyl-3-amides and esters which showed moderate antimalarial activity, coupled to significant toxicity, we were prompted to investigate the synthesis of a series of indolyl-3-ethanone-α-amines (3.37 and 3.41), ethers (3.39 and 3.44) and thioethers (3.42, 3.43, 3.40, 3.45 – 3.73), where the carbonyl moiety and respective heteroatom were separated by a methine spacer. We further investigated these compounds for in vitro biological activity against P. falciparum and a human HeLa cell line. Our study explored the synthetic pathway of a three-step procedure toward our target compounds, with the initial Friedel-Crafts acetylation of indole, followed by α-bromination of the respective 3-acetylindoles. Finally, the halogen of the α-bromo ketone was substituted with an appropriate nucleophile, to yield our desired compounds. Various reagents were explored to optimise the nucleophilic displacement step, including potassium carbonate and various silver containing compounds. While many of the silver salts were found to assist in nucleophilic substitution, none were superior to the addition of potassium carbonate. The majority of compounds, chiefly the thioethers, displayed promising antimalarial activity, against the chloroquine sensitive 3D7 P. falciparum strain, with two thioethers in particular (3.54 and 3.65) inhibiting P. falciparum in the low nanomolar range. Additionally, active compounds were generally found to be non-toxic against HeLa cells, indicating that indolyl-3-thioethers are selective for the malaria parasite. These findings allowed us to begin hypothesising a structure activity relationship of this class, as well as elucidating the possible pharmacophore. In a speculative attempt to uncover the possible mechanism of action of these active compounds, in silico docking studies were conducted against Staphylococcus aureus HPPK (PDB ID: 4CRJ), which is an enzyme that immediately precedes DHPS in the microbial folate biosynthesis. Inhibition of folate biosynthesis is a validated selective antimalarial pathway and HPPK also exists in P. falciparum. Results from these docking studies suggested that our inhibitors bound well in the HPPK ATP pocket and were supportive of our hypothesized structure activity relationship.
- Full Text:
- Authors: Svogie, Archibald Lesley
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MPharm
- Identifier: http://hdl.handle.net/10962/55487 , vital:26704
- Description: According to the World Health Organisation (WHO), deaths attributed to Plasmodium falciparum exceeded 584 000 in 2013, with 198 million new cases of malaria being reported. One contributing factor to these alarming figures is the emergence of drug resistance against available antimalarial agents. Therefore, there is a pressing need to develop new therapeutic antimalarial drugs with novel mechanisms of action in order to curb the increasing spread of malaria. The indole scaffold is often associated with biologically active compounds, recently exemplified by the antimalarial agent NITD609, which is currently in phase 1 clinical trials. Based on the biological evaluation of a small series of indolyl-3-amides and esters which showed moderate antimalarial activity, coupled to significant toxicity, we were prompted to investigate the synthesis of a series of indolyl-3-ethanone-α-amines (3.37 and 3.41), ethers (3.39 and 3.44) and thioethers (3.42, 3.43, 3.40, 3.45 – 3.73), where the carbonyl moiety and respective heteroatom were separated by a methine spacer. We further investigated these compounds for in vitro biological activity against P. falciparum and a human HeLa cell line. Our study explored the synthetic pathway of a three-step procedure toward our target compounds, with the initial Friedel-Crafts acetylation of indole, followed by α-bromination of the respective 3-acetylindoles. Finally, the halogen of the α-bromo ketone was substituted with an appropriate nucleophile, to yield our desired compounds. Various reagents were explored to optimise the nucleophilic displacement step, including potassium carbonate and various silver containing compounds. While many of the silver salts were found to assist in nucleophilic substitution, none were superior to the addition of potassium carbonate. The majority of compounds, chiefly the thioethers, displayed promising antimalarial activity, against the chloroquine sensitive 3D7 P. falciparum strain, with two thioethers in particular (3.54 and 3.65) inhibiting P. falciparum in the low nanomolar range. Additionally, active compounds were generally found to be non-toxic against HeLa cells, indicating that indolyl-3-thioethers are selective for the malaria parasite. These findings allowed us to begin hypothesising a structure activity relationship of this class, as well as elucidating the possible pharmacophore. In a speculative attempt to uncover the possible mechanism of action of these active compounds, in silico docking studies were conducted against Staphylococcus aureus HPPK (PDB ID: 4CRJ), which is an enzyme that immediately precedes DHPS in the microbial folate biosynthesis. Inhibition of folate biosynthesis is a validated selective antimalarial pathway and HPPK also exists in P. falciparum. Results from these docking studies suggested that our inhibitors bound well in the HPPK ATP pocket and were supportive of our hypothesized structure activity relationship.
- Full Text:
Isolation, characterization and biomimetic oxidation of selected marine natural products and their analogues
- Authors: Mutsvairo, Tafadzwa
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/64685 , vital:28592
- Description: Marine brown algae produce a variety of terpenes with a wide range of biological activities. However, very few phytochemical studies of brown algae have been conducted in South Africa. Therefore, in our continued search for biologically active natural products, we examined the South African brown alga Brassicophycus brassicaeformis. The dichloromethane-methanol extract of B.brassicaeformis was fractionated by silica gel column chromatography followed by normal phase HPLC to give pure four pure compounds which were identified by spectroscopic methods as; fucosterol, fucoxanthin and two monogalactosyldiacylglycerol lipids. Many potential drug molecules such as natural products have failed to reach the market due to poor pharmacokinetic and metabolic profiles despite having potent biological activity. Therefore the importance of early drug metabolism studies in the drug development process is clear. A biomimetic oxidation model was used for in vitro drug metabolism studies to predict any possible metabolites that could be produced by these natural products. Two biomimetic oxidation models catalyzed by two water soluble metalloporphyrins as biomimics of cytochrome P450, in the presence of two terminal oxidants either hydrogen peroxide or iodobenzene diacetete were successfully developed. The models were applied to a range of natural products. The oxidation of the quinone natural products, sargahydroquinoic acid, and lapachol was most easily achieved by metalloporphyrins employed in this study.
- Full Text:
- Authors: Mutsvairo, Tafadzwa
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/64685 , vital:28592
- Description: Marine brown algae produce a variety of terpenes with a wide range of biological activities. However, very few phytochemical studies of brown algae have been conducted in South Africa. Therefore, in our continued search for biologically active natural products, we examined the South African brown alga Brassicophycus brassicaeformis. The dichloromethane-methanol extract of B.brassicaeformis was fractionated by silica gel column chromatography followed by normal phase HPLC to give pure four pure compounds which were identified by spectroscopic methods as; fucosterol, fucoxanthin and two monogalactosyldiacylglycerol lipids. Many potential drug molecules such as natural products have failed to reach the market due to poor pharmacokinetic and metabolic profiles despite having potent biological activity. Therefore the importance of early drug metabolism studies in the drug development process is clear. A biomimetic oxidation model was used for in vitro drug metabolism studies to predict any possible metabolites that could be produced by these natural products. Two biomimetic oxidation models catalyzed by two water soluble metalloporphyrins as biomimics of cytochrome P450, in the presence of two terminal oxidants either hydrogen peroxide or iodobenzene diacetete were successfully developed. The models were applied to a range of natural products. The oxidation of the quinone natural products, sargahydroquinoic acid, and lapachol was most easily achieved by metalloporphyrins employed in this study.
- Full Text:
Istraight Lendaba
- Authors: Motsei, Mmatshilo T N
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:6015 , http://hdl.handle.net/10962/d1021235
- Description: My collection of stories describes the lives of ordinary black people living in post‐apartheid South Africa, especially those living in the margins, and the compromises that poverty forces them to make. In such a world, virtue and vice are flip sides of the same coin. My stories search for hope in an environment which Ayi Kwei Armah describes as “so completely seized with danger and so many different kinds of loss.” My writing is inspired by Mozambican writer Luis Bernardo Honwana, South African writer Joel Matlou whose demotic stories gave voice to everyday life in the townships, and Cameroonian writer Werewere Liking’s as well as Brenda Fassie’s powerful representation of the subversive nature of African women.
- Full Text:
- Authors: Motsei, Mmatshilo T N
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:6015 , http://hdl.handle.net/10962/d1021235
- Description: My collection of stories describes the lives of ordinary black people living in post‐apartheid South Africa, especially those living in the margins, and the compromises that poverty forces them to make. In such a world, virtue and vice are flip sides of the same coin. My stories search for hope in an environment which Ayi Kwei Armah describes as “so completely seized with danger and so many different kinds of loss.” My writing is inspired by Mozambican writer Luis Bernardo Honwana, South African writer Joel Matlou whose demotic stories gave voice to everyday life in the townships, and Cameroonian writer Werewere Liking’s as well as Brenda Fassie’s powerful representation of the subversive nature of African women.
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Land-use effects on mammal communities in the Fish-Kowie corridor, Eastern Cape, South Africa, with particular reference to carnivores
- Authors: Kok, Armand du Preez
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/561 , vital:19970
- Description: Human population growth is causing an increase in habitat transformation on a global scale, and this transformation is driven by changes in land-use practices. One consequence of habitat transformation is the negative effect it can have on mammal communities, especially carnivores. Carnivores are important components of ecosystems as they play an essential structuring role, but also often come into conflict with people. I studied the impact of land-use on mammalian diversity, the attitudes of landowners/managers towards carnivores, the distribution of carnivores, and the interactions among carnivore species in the Fish-Kowie corridor (FKC), an area of conservation concern, in the Eastern Cape, South Africa. Livestock and game farming are the two dominant land-use types in the FKC. Carnivore distribution data were collected between 2012 and 2014 using a robust camera trap survey that consisted of 432 camera stations (216 on livestock and 216 on game farms). In addition, the attitudes of 55 landowners/managers were assessed using semi- structured questionnaire interviews that were conducted in person. My results revealed that mammal diversity was similar on the two land-use types. However, individual species differed in their distribution on the two land-use types. In general, both livestock and game farmers had negative attitudes towards carnivores in the FKC, due to their depredation of valuable livestock and game species. Black-backed jackals (Canis mesomelas), caracals (Caracal caracal), leopards (Panthera pardus), and brown hyaenas (Parahyaena brunnea) were considered the most problematic carnivores, but sensitivity to land-use varied among these four species. Black- backed jackals had the highest occupancy rates of all four predators and were 3.8 times more likely to occupy sites on game farms compared to livestock farms. By contrast, leopards and brown hyaenas were only detected on game farms, and caracals did not appear to be sensitive to the effects of land-use. In general, the interactions among carnivores were weak and were likely driven by carnivore diversity, resource partitioning, and anthropogenic pressures. While there were many subtle differences in the distribution of mammal species and human attitudes towards wildlife on livestock and game farms in the FKC, there were also many similarities. My study has produced results that can be used by the FKC community to better understand how mammals and humans interact across the landscape, information that will ultimately contribute to future conservation planning in the area.
- Full Text:
- Authors: Kok, Armand du Preez
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/561 , vital:19970
- Description: Human population growth is causing an increase in habitat transformation on a global scale, and this transformation is driven by changes in land-use practices. One consequence of habitat transformation is the negative effect it can have on mammal communities, especially carnivores. Carnivores are important components of ecosystems as they play an essential structuring role, but also often come into conflict with people. I studied the impact of land-use on mammalian diversity, the attitudes of landowners/managers towards carnivores, the distribution of carnivores, and the interactions among carnivore species in the Fish-Kowie corridor (FKC), an area of conservation concern, in the Eastern Cape, South Africa. Livestock and game farming are the two dominant land-use types in the FKC. Carnivore distribution data were collected between 2012 and 2014 using a robust camera trap survey that consisted of 432 camera stations (216 on livestock and 216 on game farms). In addition, the attitudes of 55 landowners/managers were assessed using semi- structured questionnaire interviews that were conducted in person. My results revealed that mammal diversity was similar on the two land-use types. However, individual species differed in their distribution on the two land-use types. In general, both livestock and game farmers had negative attitudes towards carnivores in the FKC, due to their depredation of valuable livestock and game species. Black-backed jackals (Canis mesomelas), caracals (Caracal caracal), leopards (Panthera pardus), and brown hyaenas (Parahyaena brunnea) were considered the most problematic carnivores, but sensitivity to land-use varied among these four species. Black- backed jackals had the highest occupancy rates of all four predators and were 3.8 times more likely to occupy sites on game farms compared to livestock farms. By contrast, leopards and brown hyaenas were only detected on game farms, and caracals did not appear to be sensitive to the effects of land-use. In general, the interactions among carnivores were weak and were likely driven by carnivore diversity, resource partitioning, and anthropogenic pressures. While there were many subtle differences in the distribution of mammal species and human attitudes towards wildlife on livestock and game farms in the FKC, there were also many similarities. My study has produced results that can be used by the FKC community to better understand how mammals and humans interact across the landscape, information that will ultimately contribute to future conservation planning in the area.
- Full Text:
Landscapes of division: social movements and the politics of urban and rural space in the Grahamstown region of the Eastern Cape
- Authors: O’Halloran, Paddy
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/3950 , vital:20572
- Description: This thesis investigates the politics of two grassroots social movements, the Unemployed People’s Movement (UPM), based in Grahamstown, and the Rural People’s Movement (RPM), based in the rural areas near Peddie, forty miles east. Observing that urban and rural are political designations, the primary question of this thesis is: Do the politics of these social movements challenge the conception of urban and rural as discrete political spaces? To some extent, it responds to and complicates Mamdani’s theory of a bifurcated state in post-apartheid South Africa in which urban zones are the site of civil society and rural zones the site of traditional authorities, and only the former a democratised space (1996). Three themes—race, space, and citizenship—are employed and interrogated in the process of answering the principal question. Broadly historical in nature, and understanding the present political context to be a product of historical processes, the thesis begins with an historical study of the Grahamstown region from the time of the town’s founding in 1812 until the end of apartheid in 1994, keeping the three key themes in focus. Then the politics of UPM and RPM are explored through a series of interviews aimed at understanding the context and experience of movement members and seeking their insight into the question of urban and rural space. Their responses are presented as a dialogue employing a theoretical strategy from Aguilar (2014) that distinguishes between and provides a framework to measure the ‘practical scope’ and the ‘interior horizon’ of movements. The thesis concludes with a discussion of important themes arising in the interviews: citizenship, NGOs, and political parties, and, of course, space. The backdrop to this concluding discussion is the xenophobic violence which occurred in Grahamstown in October 2015, helping situate the research and themes within the broader context of South African politics.
- Full Text:
- Authors: O’Halloran, Paddy
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/3950 , vital:20572
- Description: This thesis investigates the politics of two grassroots social movements, the Unemployed People’s Movement (UPM), based in Grahamstown, and the Rural People’s Movement (RPM), based in the rural areas near Peddie, forty miles east. Observing that urban and rural are political designations, the primary question of this thesis is: Do the politics of these social movements challenge the conception of urban and rural as discrete political spaces? To some extent, it responds to and complicates Mamdani’s theory of a bifurcated state in post-apartheid South Africa in which urban zones are the site of civil society and rural zones the site of traditional authorities, and only the former a democratised space (1996). Three themes—race, space, and citizenship—are employed and interrogated in the process of answering the principal question. Broadly historical in nature, and understanding the present political context to be a product of historical processes, the thesis begins with an historical study of the Grahamstown region from the time of the town’s founding in 1812 until the end of apartheid in 1994, keeping the three key themes in focus. Then the politics of UPM and RPM are explored through a series of interviews aimed at understanding the context and experience of movement members and seeking their insight into the question of urban and rural space. Their responses are presented as a dialogue employing a theoretical strategy from Aguilar (2014) that distinguishes between and provides a framework to measure the ‘practical scope’ and the ‘interior horizon’ of movements. The thesis concludes with a discussion of important themes arising in the interviews: citizenship, NGOs, and political parties, and, of course, space. The backdrop to this concluding discussion is the xenophobic violence which occurred in Grahamstown in October 2015, helping situate the research and themes within the broader context of South African politics.
- Full Text:
Leopard population density and community attitudes towards leopards in and around Debshan Ranch, Shangani, Zimbabwe
- Authors: Nyoni, Phumuzile
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5946 , http://hdl.handle.net/10962/d1020838
- Description: Leopards (Panthera pardus) are regarded as one of the most resilient large carnivore species in the world and can persist in human dominated landscapes, areas with low prey availability nd highly fragmented habitats. However, recent evidence across much of their range reveals declining populations. In Zimbabwe, 500 Convention for the International Trade in Endangered Species (CITES) export tags are available annually for leopards as hunting trophies, despite limited accurate data on the leopard populations of the country. Moreover, when coupled with the massive land conversions under the controversial National Land Reform Programme (NLRP), leopard populations in Zimbabwe are in dire need of assessment. My study was conducted on Debshan ranch, Shangani, Zimbabwe, which is a commercial cattle (Bos indicus) ranch but also supports a high diversity of indigenous wildlife including an apparently healthy leopard population. However, the NLRP has resulted in an increase in small-holder subsistence farming communities around the ranch (the land was previously privately owned and divided into larger sub-units). This change in land-use means that both human and livestock densities have increased and the potential for human leopard conflict has increased. I estimated the leopard population density of the ranch and assessed community attitudes towards leopards in the communities surrounding the ranch. To estimate population densities, I performed spoor counts and conducted a camera trapping survey. Questionnaire interviews were used to assess community attitudes. My spoor counts provided a leopard density estimate of 13.57 leopards/100km2 compared to the camera trapping estimate of between 2.0 and 6.9 leopards/100km2. Although the high density estimate derived from the spoor counts is possible for Debshan because leopards are the apex predators and are adequately protected, potential edge effects are not yet fully understood. Thus, the more conservative estimate of 2.0 leopards/100km2, derived from the camera trapping survey, is probably more appropriate. Attitudes towards predators amongst respondents surrounding Debshan (n = 140) were neither too negative nor positive, attitude index had a mean score of 1.7 ± 3.8 (range: -7 – 10). No single predictor variable used in my analysis was able to adequately explain why the communities held these negative views. However, livestock losses were repeatedly listed by respondents as being one of the main reasons for their lack of tolerance towards predators. The density estimate of 2.0 leopards/100km2 translates to a population of 9 – 26 leopards within Debshan ranch. This density estimate is too low considering the habitat type at Debshan ranch but should be interpreted with caution as it lacks fundamental elements like age and sex ratio. Moreover, the interaction of the leopard population with the surrounding communities is currently unclear. As a precautionary measure, I recommended reducing the annual hunting quota for Debshan from five to one leopard. Future work should aim to improve the attitudes of the surrounding communities to secure broader landscapes for leopard conservation while also reconciling density estimates to fully understand the leopard population of the region.
- Full Text:
- Authors: Nyoni, Phumuzile
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5946 , http://hdl.handle.net/10962/d1020838
- Description: Leopards (Panthera pardus) are regarded as one of the most resilient large carnivore species in the world and can persist in human dominated landscapes, areas with low prey availability nd highly fragmented habitats. However, recent evidence across much of their range reveals declining populations. In Zimbabwe, 500 Convention for the International Trade in Endangered Species (CITES) export tags are available annually for leopards as hunting trophies, despite limited accurate data on the leopard populations of the country. Moreover, when coupled with the massive land conversions under the controversial National Land Reform Programme (NLRP), leopard populations in Zimbabwe are in dire need of assessment. My study was conducted on Debshan ranch, Shangani, Zimbabwe, which is a commercial cattle (Bos indicus) ranch but also supports a high diversity of indigenous wildlife including an apparently healthy leopard population. However, the NLRP has resulted in an increase in small-holder subsistence farming communities around the ranch (the land was previously privately owned and divided into larger sub-units). This change in land-use means that both human and livestock densities have increased and the potential for human leopard conflict has increased. I estimated the leopard population density of the ranch and assessed community attitudes towards leopards in the communities surrounding the ranch. To estimate population densities, I performed spoor counts and conducted a camera trapping survey. Questionnaire interviews were used to assess community attitudes. My spoor counts provided a leopard density estimate of 13.57 leopards/100km2 compared to the camera trapping estimate of between 2.0 and 6.9 leopards/100km2. Although the high density estimate derived from the spoor counts is possible for Debshan because leopards are the apex predators and are adequately protected, potential edge effects are not yet fully understood. Thus, the more conservative estimate of 2.0 leopards/100km2, derived from the camera trapping survey, is probably more appropriate. Attitudes towards predators amongst respondents surrounding Debshan (n = 140) were neither too negative nor positive, attitude index had a mean score of 1.7 ± 3.8 (range: -7 – 10). No single predictor variable used in my analysis was able to adequately explain why the communities held these negative views. However, livestock losses were repeatedly listed by respondents as being one of the main reasons for their lack of tolerance towards predators. The density estimate of 2.0 leopards/100km2 translates to a population of 9 – 26 leopards within Debshan ranch. This density estimate is too low considering the habitat type at Debshan ranch but should be interpreted with caution as it lacks fundamental elements like age and sex ratio. Moreover, the interaction of the leopard population with the surrounding communities is currently unclear. As a precautionary measure, I recommended reducing the annual hunting quota for Debshan from five to one leopard. Future work should aim to improve the attitudes of the surrounding communities to secure broader landscapes for leopard conservation while also reconciling density estimates to fully understand the leopard population of the region.
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Life history of the maritime platygastrid Echthrodesis lamorali Masner 1968 (Hymenoptera: Platygastridae: Scelioninae)
- Authors: Owen, Candice Ann
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/837 , vital:19995 , 10.21504/10962/837
- Description: Echthrodesis lamorali Masner 1968 (Hymenoptera: Platygastridae, Scelioninae) is an intertidal parasitoid wasp that uses the eggs of the maritime spider, Desis formidabilis O.P. Cambridge 1890 (Araneae: Desidae), as a host. This species is one of only three known maritime parasitoids globally, and is the only known spider egg parasitoid that attacks its host within the intertidal region in southern Africa. Originally described from ‘The Island’, Kommetjie (Western Cape, South Africa), this shore was the only known locality of the species at the commencement of this thesis. Furthermore, the extent of the parasitism pressure the wasp exerts on D. formidabilis was largely unknown, along with its basic biology (drivers of its broad-scale and fine-scale distribution patterns; parasitism incidence; and sex ratios) and morphological and physiological adaptations for living within the frequently saltwater-inundated environment. This thesis unravelled these aspects, as well as experimentally provided data for many components of the life history of E. lamorali that had only been hypothesized by other authors, at a variety of scales, from the country-wide ecosystem, to single shores, and finally to the scale of the individual. While the distribution of E. lamorali was found to be much wider than previously thought, it remained restricted to the shores of the Cape Peninsula (Western Cape, South Africa). The host spiders were located throughout a much wider distributional range than the wasp, from East London in the east to the Peninsula, but some behavioural and morphological differences were found between those within and outside of the range of the parasitoid, suggesting range-limitation imposed by the host on E. lamorali. This limitation may be strengthened by the general lack of suitable shore types within the close vicinity of the Peninsula. Modelling using macro-climatic conditions suggested that maximum temperatures and humidities were also largely limiting to E. lamorali, although these patterns were not observable in the micro-climates in which the species survives. The wasp populations and spiders within the range of E. lamorali as identified in Chapter 2 were assessed to determine any preferences for local conditions, including location along the Peninsula, nesting sites and intertidal zones within single shores, using AICc modelling, which detected parasitism patterns in D. formidabilis and E. lamorali populations, as well as the sex ratios in the latter species. The models showed that the spider population size and distribution was more influenced by bottom-up factors such as abiotic components of the shore than by parasitism, which only showed density dependence with the host at certain scales. Both host and parasitoid populations illustrated a preference for the middle zone on single shores. Observed spider nest characteristics suggested opportunistic nesting behaviour in the species, although preference was shown for construction along an east-west orientation and in locations with low sun exposure. Along with larger population sizes on the west coast over the east coast (not reflected by E. lamorali), these observations suggest that D. formidabilis prefers cooler environments. Spider brood success was 50% in unparasitized egg-sacs, but this figure halved when E. lamorali gained access to the eggs (of which 100% within a single compartment were parasitized each time). Encapsulation of the embryo was found to be positively correlated with parasitism, indicating some form of host resistance. Resultant parasitoid broods illustrated a strong female bias in the species, as is common for this group of insects. The life history of E. lamorali was then assessed at a smaller scale, that of the individual. Scanning electron microscopy of whole E. lamorali specimens and light microscopy of sectioned specimens demonstrated no morphological adaptations in the trachea and spiracles to cope with saltwater inundation. On the other hand, respirometry experiments categorically demonstrated that the species copes with inundation through the formation of a physical gill over the full habitus, and the induction of a state of torpor to reduce metabolic needs, when submerged. This precludes the need for any further morphological adaptations. Determination of the wasp’s critical thermal tolerance illustrated a wide temperature range with a particularly cold lower limit of -1.1ºC ± 0.16, suggesting the presence of related genera or ancestors in much colder environments. With a much broader distribution than previously thought, and the inclusion of the distributional range of E. lamorali within the Table Mountain National Park, this species is being effectively conserved and managed through the umbrella-conservation of the park. Links to the host proved to vary at differing scales, proving the need for scale considerations to be included in other similar biological and ecological studies. Finally, the species showed physiological adaptation to its intertidal existence. Echthrodesis lamorali, the only discovered maritime spider egg parasitoid in Southern Africa, displayed unusual characteristics at every scale of its life history and as such, warrants further investigation.
- Full Text:
- Authors: Owen, Candice Ann
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/837 , vital:19995 , 10.21504/10962/837
- Description: Echthrodesis lamorali Masner 1968 (Hymenoptera: Platygastridae, Scelioninae) is an intertidal parasitoid wasp that uses the eggs of the maritime spider, Desis formidabilis O.P. Cambridge 1890 (Araneae: Desidae), as a host. This species is one of only three known maritime parasitoids globally, and is the only known spider egg parasitoid that attacks its host within the intertidal region in southern Africa. Originally described from ‘The Island’, Kommetjie (Western Cape, South Africa), this shore was the only known locality of the species at the commencement of this thesis. Furthermore, the extent of the parasitism pressure the wasp exerts on D. formidabilis was largely unknown, along with its basic biology (drivers of its broad-scale and fine-scale distribution patterns; parasitism incidence; and sex ratios) and morphological and physiological adaptations for living within the frequently saltwater-inundated environment. This thesis unravelled these aspects, as well as experimentally provided data for many components of the life history of E. lamorali that had only been hypothesized by other authors, at a variety of scales, from the country-wide ecosystem, to single shores, and finally to the scale of the individual. While the distribution of E. lamorali was found to be much wider than previously thought, it remained restricted to the shores of the Cape Peninsula (Western Cape, South Africa). The host spiders were located throughout a much wider distributional range than the wasp, from East London in the east to the Peninsula, but some behavioural and morphological differences were found between those within and outside of the range of the parasitoid, suggesting range-limitation imposed by the host on E. lamorali. This limitation may be strengthened by the general lack of suitable shore types within the close vicinity of the Peninsula. Modelling using macro-climatic conditions suggested that maximum temperatures and humidities were also largely limiting to E. lamorali, although these patterns were not observable in the micro-climates in which the species survives. The wasp populations and spiders within the range of E. lamorali as identified in Chapter 2 were assessed to determine any preferences for local conditions, including location along the Peninsula, nesting sites and intertidal zones within single shores, using AICc modelling, which detected parasitism patterns in D. formidabilis and E. lamorali populations, as well as the sex ratios in the latter species. The models showed that the spider population size and distribution was more influenced by bottom-up factors such as abiotic components of the shore than by parasitism, which only showed density dependence with the host at certain scales. Both host and parasitoid populations illustrated a preference for the middle zone on single shores. Observed spider nest characteristics suggested opportunistic nesting behaviour in the species, although preference was shown for construction along an east-west orientation and in locations with low sun exposure. Along with larger population sizes on the west coast over the east coast (not reflected by E. lamorali), these observations suggest that D. formidabilis prefers cooler environments. Spider brood success was 50% in unparasitized egg-sacs, but this figure halved when E. lamorali gained access to the eggs (of which 100% within a single compartment were parasitized each time). Encapsulation of the embryo was found to be positively correlated with parasitism, indicating some form of host resistance. Resultant parasitoid broods illustrated a strong female bias in the species, as is common for this group of insects. The life history of E. lamorali was then assessed at a smaller scale, that of the individual. Scanning electron microscopy of whole E. lamorali specimens and light microscopy of sectioned specimens demonstrated no morphological adaptations in the trachea and spiracles to cope with saltwater inundation. On the other hand, respirometry experiments categorically demonstrated that the species copes with inundation through the formation of a physical gill over the full habitus, and the induction of a state of torpor to reduce metabolic needs, when submerged. This precludes the need for any further morphological adaptations. Determination of the wasp’s critical thermal tolerance illustrated a wide temperature range with a particularly cold lower limit of -1.1ºC ± 0.16, suggesting the presence of related genera or ancestors in much colder environments. With a much broader distribution than previously thought, and the inclusion of the distributional range of E. lamorali within the Table Mountain National Park, this species is being effectively conserved and managed through the umbrella-conservation of the park. Links to the host proved to vary at differing scales, proving the need for scale considerations to be included in other similar biological and ecological studies. Finally, the species showed physiological adaptation to its intertidal existence. Echthrodesis lamorali, the only discovered maritime spider egg parasitoid in Southern Africa, displayed unusual characteristics at every scale of its life history and as such, warrants further investigation.
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Links between valley confinement, landforms and vegetation distribution in a semi-arid valley floor environment, Baviaanskloof, South Africa
- Authors: Smith-Adao, Lindie B
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/953 , vital:20006
- Description: Although a large body of international literature has advanced our understanding of river systems, a considerable amount of gaps exit in the knowledge of dryland systems. River systems reflect complex interactions between biophysical processes and patterns. Understanding how processes generate observed patterns and, in turn, how patterns influence processes is crucial to understanding river structure and function. It requires an interdisciplinary approach in both research and resulting applications. The aim of this thesis was to examine the relationship between valley confinement, fluvial style, valley floor morphology and vegetation in the semi-arid environment of the Baviaanskloof river catchment, South Africa. This interdisciplinary investigation used a mixed method approach that involved desktop analyses and field surveys to understand dynamics at multiple scales, from the whole catchment to local (site, reach and quadrat or sample plot) scales. The desktop analyses included historical rainfall patterns and climate extremes, aerial photograph time-series and remote sensing greenness indices, and the field surveys focussed on cross-valley landform profiles, groundwater depth levels, sediment size distribution and soil chemistry, and vegetation distribution patterns. Based on the integrative assessment of these techniques a framework was developed of the links between valley confinement, surface-groundwater interaction, hydrogeomorphic processes and landforms, vegetation and human activities. Study findings highlighted the fact that very strong links exist between these factors. In this semi-arid area water availability (groundwater and streamflow conditions) was the primary control on valley floor vegetation composition and patterning. One group of species was associated with the wetted channel reaches at confined and semi-confined valley settings, while the other was associated with dry bed channel reaches at unconfined valley settings. The analyses also indicated that the environmental variables which best explained the variation in vegetation at the differing geomorphic landforms were related to landform position (elevation and distance), sediment size (fine and coarse sand) and available phosphorus (i.e. human impacts). The different plants, in turn, also affected landforms through their influence on sediment erosion, transport and deposition. Specially, they build, maintained or modified geomorphic landforms at confined, semi-confined and unconfined valley settings across the valley floor. Valley confinement was a primary control influencing hydrogeomorphic processes and their associated landforms. Alluvial fans and terraces acted as critical additional controls at especially the unconfined valley setting. Implications for restoration efforts in the catchment included strategies that took cognisance of: active revegetation on floodplain surfaces related to former agricultural fields; channel switching associated with the highly dynamic and unpredictable nature of geomorphic features; unstable multi-thread braided channels in the unconfined valley setting; and the selection of representative monitoring sites.
- Full Text:
- Authors: Smith-Adao, Lindie B
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/953 , vital:20006
- Description: Although a large body of international literature has advanced our understanding of river systems, a considerable amount of gaps exit in the knowledge of dryland systems. River systems reflect complex interactions between biophysical processes and patterns. Understanding how processes generate observed patterns and, in turn, how patterns influence processes is crucial to understanding river structure and function. It requires an interdisciplinary approach in both research and resulting applications. The aim of this thesis was to examine the relationship between valley confinement, fluvial style, valley floor morphology and vegetation in the semi-arid environment of the Baviaanskloof river catchment, South Africa. This interdisciplinary investigation used a mixed method approach that involved desktop analyses and field surveys to understand dynamics at multiple scales, from the whole catchment to local (site, reach and quadrat or sample plot) scales. The desktop analyses included historical rainfall patterns and climate extremes, aerial photograph time-series and remote sensing greenness indices, and the field surveys focussed on cross-valley landform profiles, groundwater depth levels, sediment size distribution and soil chemistry, and vegetation distribution patterns. Based on the integrative assessment of these techniques a framework was developed of the links between valley confinement, surface-groundwater interaction, hydrogeomorphic processes and landforms, vegetation and human activities. Study findings highlighted the fact that very strong links exist between these factors. In this semi-arid area water availability (groundwater and streamflow conditions) was the primary control on valley floor vegetation composition and patterning. One group of species was associated with the wetted channel reaches at confined and semi-confined valley settings, while the other was associated with dry bed channel reaches at unconfined valley settings. The analyses also indicated that the environmental variables which best explained the variation in vegetation at the differing geomorphic landforms were related to landform position (elevation and distance), sediment size (fine and coarse sand) and available phosphorus (i.e. human impacts). The different plants, in turn, also affected landforms through their influence on sediment erosion, transport and deposition. Specially, they build, maintained or modified geomorphic landforms at confined, semi-confined and unconfined valley settings across the valley floor. Valley confinement was a primary control influencing hydrogeomorphic processes and their associated landforms. Alluvial fans and terraces acted as critical additional controls at especially the unconfined valley setting. Implications for restoration efforts in the catchment included strategies that took cognisance of: active revegetation on floodplain surfaces related to former agricultural fields; channel switching associated with the highly dynamic and unpredictable nature of geomorphic features; unstable multi-thread braided channels in the unconfined valley setting; and the selection of representative monitoring sites.
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Livelihood strategies of female-headed households in the Coloured community of Sunningdale in Harare, Zimbabwe
- Authors: Wadi, Chenai C
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSocSc
- Identifier: http://hdl.handle.net/10962/3839 , vital:20547
- Description: The turbulent economic and political situation that has plagued Zimbabwe over the past two decades has had a dire effect on its urban population. The country’s tempestuous situation has not only threatened urbanites’ access to basic necessities but has also rendered many households and particularly female-headed households vulnerable to poverty and deprivation. Thus the primary objective of this study was to analyse and understand how coloured female-headed households in Sunningdale, Harare, Zimbabwe are surviving in the context of the current economic and political crises in the country. Essentially the study sought to achieve the three main objectives. The first objective was to identify and document the current livelihood strategies that a small sample of coloured female-headed households have adopted; the second was to explore the challenges and problems faced by female-headed households in their daily lives and lastly, the third was to establish what support mechanisms were available to these households to cope with the challenges and problems they face in generating an income and catering to their household needs. Methodologically the study employed a qualitative research approach with in-depth semi-structured interviews being used to collect data from five female-headed households. The data was then analysed using an interpretive approach and presented textually. Essentially the study found that in terms of the first research objective that coloured female-headed households engaged in a range of livelihood activities in order to earn a living, with informal trading being the main livelihood activity that the participants relied on to acquire an income to support their households. With regards to the second objective, it was revealed that the female heads interviewed faced numerous challenges ranging from economic to social problems that limited their ability to develop sustainable livelihoods, thereby increasing their risk to fall into poverty and validating their feminization of poverty. In terms of the third and last objective, the study found that the female heads did not have many reliable support mechanisms available to them thereby limiting their ability to achieve financial and social empowerment.
- Full Text:
- Authors: Wadi, Chenai C
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSocSc
- Identifier: http://hdl.handle.net/10962/3839 , vital:20547
- Description: The turbulent economic and political situation that has plagued Zimbabwe over the past two decades has had a dire effect on its urban population. The country’s tempestuous situation has not only threatened urbanites’ access to basic necessities but has also rendered many households and particularly female-headed households vulnerable to poverty and deprivation. Thus the primary objective of this study was to analyse and understand how coloured female-headed households in Sunningdale, Harare, Zimbabwe are surviving in the context of the current economic and political crises in the country. Essentially the study sought to achieve the three main objectives. The first objective was to identify and document the current livelihood strategies that a small sample of coloured female-headed households have adopted; the second was to explore the challenges and problems faced by female-headed households in their daily lives and lastly, the third was to establish what support mechanisms were available to these households to cope with the challenges and problems they face in generating an income and catering to their household needs. Methodologically the study employed a qualitative research approach with in-depth semi-structured interviews being used to collect data from five female-headed households. The data was then analysed using an interpretive approach and presented textually. Essentially the study found that in terms of the first research objective that coloured female-headed households engaged in a range of livelihood activities in order to earn a living, with informal trading being the main livelihood activity that the participants relied on to acquire an income to support their households. With regards to the second objective, it was revealed that the female heads interviewed faced numerous challenges ranging from economic to social problems that limited their ability to develop sustainable livelihoods, thereby increasing their risk to fall into poverty and validating their feminization of poverty. In terms of the third and last objective, the study found that the female heads did not have many reliable support mechanisms available to them thereby limiting their ability to achieve financial and social empowerment.
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Local versus landscape effects of bush encroachment on plant available light, soil moisture, frost occurrence and herbaceous productivity and composition
- Authors: Klopper, Chrisna
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3137 , vital:20376
- Description: Bush encroachment is a global phenomenon and a pressing concern for South Africa rangelands. The expansion and increase in density of Vachellia karroo (hereafter referred to aAcacia karroo) has been documented in the Eastern Cape and KwaZulu Natal in South Africa. This increase in woody species in savannas is often at the expense of grass cover and thus is causing concern about how this will impact agriculture due to possible loss of grazing capacity. To understand the impacts of bush encroachment the effect of trees on their micro-climate and abiotic factors and in turn on the herbaceous layer needs to be examined. The objective of this study was to quantify the effect of Acacia karroo encroachment on the light environment, soil moisture and frost occurrence in the sub-canopy and inter-canopy micro-habitats, and how these changes affected herbaceous player productivity and composition. Another question that is being addressed here is whether, and how, the local tree effects scale up in the landscape and whether prediction can be made based on the effects of individual trees. The study was undertaken on a farm, Endwell, in the Smaldeel, Eastern Cape. At the study site, a semi-arid savanna, Acacia karroo has been encroaching since the 1980’s. The study was conducted at three scales: landscape, stand-wide and local scale. The landscape scale was represented by four areas with 0, 21, 45 and 72% tree canopy cover, the stand-wide scale consisted of transects with varying percentages of tree canopy cover within each of the four levels of encroachment. The local scale was represented by the sub-canopy and inter-canopy environment to test the effect of trees. At the local scale plant available light and soil moisture were lower in the sub-canopy than intercanopy regions, with leaf area index being higher in the sub-canopy. This local negative effect of the tree canopy on light and soil moisture in the sub-canopy did not scale up predictably in the landscape. At the stand-wide scale light in the inter-canopy was reduced as shading increased. Frost was excluded from under the canopies and frost incidence decreased at higher tree cover. Grass productivity was reduced in the sub-canopy, possibly due to lower light and soil moisture. Overall biomass increased from the low to medium level of encroachment but lowest at the high level of encroachment. Grass composition and cover was only slightly affected by tree canopies cover and C4 grass species were still present in the sub-canopy and at lower light environments. At the levels of Acacia karroo encroachment encountered at this study site, it seems unlikely that palatable or desirable C4 would be excluded from the system and that a shift from C4 to shade-tolerant species would occur. This is due to tree canopies at the site not reducing light to such anextent that they would outcompete grasses, and likely the very low grazing pressure at thesesites. Herbaceous biomass at these sites were still sufficient to carry a fire in the inter-canopyregion and sufficient grazing for herbivores. In the sub-canopy region fires will be excluded thus with higher the portion of sub-canopy areas increasing at the high levels of encroachment they may interrupt fire spread. Thus it was concluded that Acacia karroo encroachment up to 45% tree cover is currently not creating negative feedback on herbivory, but low stocking rates appear to be key to maintain this.
- Full Text:
- Authors: Klopper, Chrisna
- Date: 2016
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3137 , vital:20376
- Description: Bush encroachment is a global phenomenon and a pressing concern for South Africa rangelands. The expansion and increase in density of Vachellia karroo (hereafter referred to aAcacia karroo) has been documented in the Eastern Cape and KwaZulu Natal in South Africa. This increase in woody species in savannas is often at the expense of grass cover and thus is causing concern about how this will impact agriculture due to possible loss of grazing capacity. To understand the impacts of bush encroachment the effect of trees on their micro-climate and abiotic factors and in turn on the herbaceous layer needs to be examined. The objective of this study was to quantify the effect of Acacia karroo encroachment on the light environment, soil moisture and frost occurrence in the sub-canopy and inter-canopy micro-habitats, and how these changes affected herbaceous player productivity and composition. Another question that is being addressed here is whether, and how, the local tree effects scale up in the landscape and whether prediction can be made based on the effects of individual trees. The study was undertaken on a farm, Endwell, in the Smaldeel, Eastern Cape. At the study site, a semi-arid savanna, Acacia karroo has been encroaching since the 1980’s. The study was conducted at three scales: landscape, stand-wide and local scale. The landscape scale was represented by four areas with 0, 21, 45 and 72% tree canopy cover, the stand-wide scale consisted of transects with varying percentages of tree canopy cover within each of the four levels of encroachment. The local scale was represented by the sub-canopy and inter-canopy environment to test the effect of trees. At the local scale plant available light and soil moisture were lower in the sub-canopy than intercanopy regions, with leaf area index being higher in the sub-canopy. This local negative effect of the tree canopy on light and soil moisture in the sub-canopy did not scale up predictably in the landscape. At the stand-wide scale light in the inter-canopy was reduced as shading increased. Frost was excluded from under the canopies and frost incidence decreased at higher tree cover. Grass productivity was reduced in the sub-canopy, possibly due to lower light and soil moisture. Overall biomass increased from the low to medium level of encroachment but lowest at the high level of encroachment. Grass composition and cover was only slightly affected by tree canopies cover and C4 grass species were still present in the sub-canopy and at lower light environments. At the levels of Acacia karroo encroachment encountered at this study site, it seems unlikely that palatable or desirable C4 would be excluded from the system and that a shift from C4 to shade-tolerant species would occur. This is due to tree canopies at the site not reducing light to such anextent that they would outcompete grasses, and likely the very low grazing pressure at thesesites. Herbaceous biomass at these sites were still sufficient to carry a fire in the inter-canopyregion and sufficient grazing for herbivores. In the sub-canopy region fires will be excluded thus with higher the portion of sub-canopy areas increasing at the high levels of encroachment they may interrupt fire spread. Thus it was concluded that Acacia karroo encroachment up to 45% tree cover is currently not creating negative feedback on herbivory, but low stocking rates appear to be key to maintain this.
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Localizing selected endocytosis protein candidates in Plasmodium falciparum using GFP-tagged fusion constructs
- Authors: Basson, Travis
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2680 , vital:20316
- Description: Malaria is a mosquito-borne infectious disease caused by several obligate intracellular protozoan parasites in the Plasmodium genus, with Plasmodium falciparum causing the most widespread cases and malaria deaths. In 2013 there were approximately 190 million cases of the disease and between 584,000 and 855,000 deaths. It is essential to identify novel drug targets and develop novel drug candidates due to the increase in resistance of P. falciparum parasites to the current arsenal of antimalarial drugs. Endocytosis is an essential process in eukaryotic cells in which the external environment is internalized by the cell in order to obtain various particles from the extracellular space. This extracellular cytoplasm is internalized in membrane-bound invaginations at the plasma membrane. During the blood stage of malaria infection, the parasite requires nutrients from the host red blood cell. To obtain these nutrients, the parasite internalizes haemoglobin in large amounts and degrades it in an acidic, lysosome-like organelle, known as the digestive vacuole. Whilst the exact molecular mechanism of malaria parasite endocytosis is not yet fully understood, a number of proteins have been suggested to be involved. The most expedient approach in identifying candidate endocytosis proteins is to investigate parasite homologues of proteins known to be involved in endocytosis in mammalian cells. The three proteins selected for investigation in this study were the P. falciparum homologues of coronin, dynamin 2, and μ4. The coding sequences for the candidate endocytosis proteins were amplified by PCR and cloned into the pARL2-GFP expression vector. P. falciparum 3D7 parasites were transfected with these vectors and the episomal expression of full-length GFP-tagged fusion protein was confirmed by Western blot analysis using commercially available anti-GFP antibodies. Microscopic analysis of live parasites using fluorescence and confocal microscopy was used to determine the localization of the candidate endocytosis proteins. Coronin appeared to display diffuse cytoplasmic GFP localization during the trophozoite stage, arguing against a role in endocytosis. However, distinct localization during the schizont stage at what appears to be the inner membrane complex was observed. Coronin is thus likely required to coordinate the formation of the actin network between the merozoite IMC and the plasma membrane on which the glideosome is dependant for generating the motile forces required for the merozoite motility and invasion of RBCs. Dynamin 2 displayed localization at three potential locii: the parasite periphery (plasma membrane), punctuate regions within the cytoplasm (potentially at membrane bound organelles) and at the parasite food vacuole. The data suggested that dynamin 2 is involved in endocytosis and membrane trafficking in a similar manner to classical dynamins, potentially as a vesicle scission molecule at the plasma membrane, mediating vesicle formation at the food vacuole to recycle membrane to the plasma membrane, and possibly mitochondria organelle division. μ4 displayed transient localization, cycling between cytosolic localization, and localization to distinct regions at the plasma membrane and the food vacuole. Localization of Pfμ4 to the plasma membrane is indicative of a role for μ4 as a part of an adaptor protein (AP) complex which may be responsible for recruitment of clathrin to initiate endocytosis in a manner similar to mammalian AP-2. As was observed with PfDYN2, Pfμ4 localizes to the FV, which suggests that Pfμ4 forms part of a coat complex that mediates the formation of vesicles that recycle membrane from the FV to the parasite plasma membrane. This study showed that expressing proteins as full-length GFP-tagged fusion constructs is an effective approach in the early stages of determining the localization and function of P. falciparum proteins in vitro, and distinguishing between candidates that have a potential role in endocytosis and those that are unlikely to do so.
- Full Text:
- Authors: Basson, Travis
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2680 , vital:20316
- Description: Malaria is a mosquito-borne infectious disease caused by several obligate intracellular protozoan parasites in the Plasmodium genus, with Plasmodium falciparum causing the most widespread cases and malaria deaths. In 2013 there were approximately 190 million cases of the disease and between 584,000 and 855,000 deaths. It is essential to identify novel drug targets and develop novel drug candidates due to the increase in resistance of P. falciparum parasites to the current arsenal of antimalarial drugs. Endocytosis is an essential process in eukaryotic cells in which the external environment is internalized by the cell in order to obtain various particles from the extracellular space. This extracellular cytoplasm is internalized in membrane-bound invaginations at the plasma membrane. During the blood stage of malaria infection, the parasite requires nutrients from the host red blood cell. To obtain these nutrients, the parasite internalizes haemoglobin in large amounts and degrades it in an acidic, lysosome-like organelle, known as the digestive vacuole. Whilst the exact molecular mechanism of malaria parasite endocytosis is not yet fully understood, a number of proteins have been suggested to be involved. The most expedient approach in identifying candidate endocytosis proteins is to investigate parasite homologues of proteins known to be involved in endocytosis in mammalian cells. The three proteins selected for investigation in this study were the P. falciparum homologues of coronin, dynamin 2, and μ4. The coding sequences for the candidate endocytosis proteins were amplified by PCR and cloned into the pARL2-GFP expression vector. P. falciparum 3D7 parasites were transfected with these vectors and the episomal expression of full-length GFP-tagged fusion protein was confirmed by Western blot analysis using commercially available anti-GFP antibodies. Microscopic analysis of live parasites using fluorescence and confocal microscopy was used to determine the localization of the candidate endocytosis proteins. Coronin appeared to display diffuse cytoplasmic GFP localization during the trophozoite stage, arguing against a role in endocytosis. However, distinct localization during the schizont stage at what appears to be the inner membrane complex was observed. Coronin is thus likely required to coordinate the formation of the actin network between the merozoite IMC and the plasma membrane on which the glideosome is dependant for generating the motile forces required for the merozoite motility and invasion of RBCs. Dynamin 2 displayed localization at three potential locii: the parasite periphery (plasma membrane), punctuate regions within the cytoplasm (potentially at membrane bound organelles) and at the parasite food vacuole. The data suggested that dynamin 2 is involved in endocytosis and membrane trafficking in a similar manner to classical dynamins, potentially as a vesicle scission molecule at the plasma membrane, mediating vesicle formation at the food vacuole to recycle membrane to the plasma membrane, and possibly mitochondria organelle division. μ4 displayed transient localization, cycling between cytosolic localization, and localization to distinct regions at the plasma membrane and the food vacuole. Localization of Pfμ4 to the plasma membrane is indicative of a role for μ4 as a part of an adaptor protein (AP) complex which may be responsible for recruitment of clathrin to initiate endocytosis in a manner similar to mammalian AP-2. As was observed with PfDYN2, Pfμ4 localizes to the FV, which suggests that Pfμ4 forms part of a coat complex that mediates the formation of vesicles that recycle membrane from the FV to the parasite plasma membrane. This study showed that expressing proteins as full-length GFP-tagged fusion constructs is an effective approach in the early stages of determining the localization and function of P. falciparum proteins in vitro, and distinguishing between candidates that have a potential role in endocytosis and those that are unlikely to do so.
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Managerial leadership in committees: a case study in a public rural combined school in the Ohangwena region, Namibia
- Authors: Vaeta, Simon
- Date: 2016
- Language: English
- Type: Thesis , Masters , MEd
- Identifier: http://hdl.handle.net/10962/1220 , vital:20036
- Description: The existing education legislations in Namibia call for school principals to put in place appropriate support mechanisms and create necessary internal conditions for leaders, including teachers who do not hold formal leadership positions, to exert their sphere of influence beyond the classroom and into school-wide leadership activities. The establishment of various committees in the school is to enhance and improve the performance of the school and to create a pleasant work environment and spirit of collaboration and teamwork (Namibia Ministry of Education, [MoE], 2005). Leadership in committees is one of the expectations of new education policy. The aim of this study was to explore the leadership practices within a range of committees in a public rural combined school in the Ohangwena region of Namibia. It further unpacked the purpose, roles and membership of each of the four committees; how these committees were established; what leadership functions the teachers as committee members exercised and what challenges inhibited their leadership practices within committees. The study provided recommendations for future research in the area of leadership practices in committees. This research is a case study. The study is designed within the qualitative interpretive paradigm. It is rooted in a social constructivist tradition and employs a range of data collection tools, namely document analysis, semi-structured interviews, observations and questionnaires to enhance the validity of findings. The study found that committees were established in line with the Namibian education legislation. However, the study found the principal lacked the experience and skills to use the committee system more effectively, and maintained the status quo. This resulted in the committees practising pure management responsibilities rather than leadership interest. The study also found that only the leadership tasks were distributed to the committees but the power was not distributed. It was revealed that committees were dormant; while they were named in school documents, they functioned variously, intermittently or not at all. The significance of the contradiction was there were no regulations to guide the conduct of committee members.
- Full Text:
- Authors: Vaeta, Simon
- Date: 2016
- Language: English
- Type: Thesis , Masters , MEd
- Identifier: http://hdl.handle.net/10962/1220 , vital:20036
- Description: The existing education legislations in Namibia call for school principals to put in place appropriate support mechanisms and create necessary internal conditions for leaders, including teachers who do not hold formal leadership positions, to exert their sphere of influence beyond the classroom and into school-wide leadership activities. The establishment of various committees in the school is to enhance and improve the performance of the school and to create a pleasant work environment and spirit of collaboration and teamwork (Namibia Ministry of Education, [MoE], 2005). Leadership in committees is one of the expectations of new education policy. The aim of this study was to explore the leadership practices within a range of committees in a public rural combined school in the Ohangwena region of Namibia. It further unpacked the purpose, roles and membership of each of the four committees; how these committees were established; what leadership functions the teachers as committee members exercised and what challenges inhibited their leadership practices within committees. The study provided recommendations for future research in the area of leadership practices in committees. This research is a case study. The study is designed within the qualitative interpretive paradigm. It is rooted in a social constructivist tradition and employs a range of data collection tools, namely document analysis, semi-structured interviews, observations and questionnaires to enhance the validity of findings. The study found that committees were established in line with the Namibian education legislation. However, the study found the principal lacked the experience and skills to use the committee system more effectively, and maintained the status quo. This resulted in the committees practising pure management responsibilities rather than leadership interest. The study also found that only the leadership tasks were distributed to the committees but the power was not distributed. It was revealed that committees were dormant; while they were named in school documents, they functioned variously, intermittently or not at all. The significance of the contradiction was there were no regulations to guide the conduct of committee members.
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Mapping Nitrogen Loading in Freshwater Systems: Using Aquatic Biota to Trace Nutrients
- Authors: Motitsoe, Samuel Nkopane
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5945 , http://hdl.handle.net/10962/d1020819
- Description: The majority of river systems in developing countries like South Africa, are found in catchments areas that are densely human populated, therefore are subjected to intense land-use and developmental pressures. Anthropogenic nutrient pollution or the excessive addition of nutrients is one important type of stressors that river systems often experience through intense land-use, which includes poor waste management and agricultural practices. Such events are referred to as the “urban syndrome”, were human populations and developmental demands outpace ecosystem services. Traditional measurements of water quality (e.g. physicochemical and micro-nutrient assessments) and biological monitoring (e.g. South African Scoring System 5, SASS5) techniques for assessing ecosystem health have being widely used to reflect the ecological health and status of river systems. However these techniques have a number of challenges associated with their application. SASS5 which is used most prevalently in southern Africa for example, can only be applied in lotic systems, it is habitat dependent and finally (but arguably most importantly) it cannot identify the source of pollution inputs. Recent laboratory studies using stable isotopic ratios (δ15N and δ13C) of aquatic macrophytes (duckweed: Spirodela sp.) have shown successful differentiation between different N-sources and the mapping of temporal and spatial nitrogen dynamics in freshwater systems. Furthermore δ15N isotopic values of Spirodela sp. showed the capability to act as an early warning indicator of eutrophication, before the onset of aquatic ecosystem degradation. Therefore, this study aimed to field test the potential of sewage plume mapping using the stable isotopic values of Spirodela sp. and aquatic macroinvertebrates at nine study sites on the Bloukrans-Kowie River and ten study sites on the Bushman-New Year’s River systems in the Eastern Cape, South Africa. And more...
- Full Text:
- Authors: Motitsoe, Samuel Nkopane
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5945 , http://hdl.handle.net/10962/d1020819
- Description: The majority of river systems in developing countries like South Africa, are found in catchments areas that are densely human populated, therefore are subjected to intense land-use and developmental pressures. Anthropogenic nutrient pollution or the excessive addition of nutrients is one important type of stressors that river systems often experience through intense land-use, which includes poor waste management and agricultural practices. Such events are referred to as the “urban syndrome”, were human populations and developmental demands outpace ecosystem services. Traditional measurements of water quality (e.g. physicochemical and micro-nutrient assessments) and biological monitoring (e.g. South African Scoring System 5, SASS5) techniques for assessing ecosystem health have being widely used to reflect the ecological health and status of river systems. However these techniques have a number of challenges associated with their application. SASS5 which is used most prevalently in southern Africa for example, can only be applied in lotic systems, it is habitat dependent and finally (but arguably most importantly) it cannot identify the source of pollution inputs. Recent laboratory studies using stable isotopic ratios (δ15N and δ13C) of aquatic macrophytes (duckweed: Spirodela sp.) have shown successful differentiation between different N-sources and the mapping of temporal and spatial nitrogen dynamics in freshwater systems. Furthermore δ15N isotopic values of Spirodela sp. showed the capability to act as an early warning indicator of eutrophication, before the onset of aquatic ecosystem degradation. Therefore, this study aimed to field test the potential of sewage plume mapping using the stable isotopic values of Spirodela sp. and aquatic macroinvertebrates at nine study sites on the Bloukrans-Kowie River and ten study sites on the Bushman-New Year’s River systems in the Eastern Cape, South Africa. And more...
- Full Text:
Marie Curie : a psychobiography
- Authors: Roets, Elmeret
- Date: 2016
- Subjects: Curie, Marie -- 1867-1934 -- Psychology , Women chemists -- Poland -- Biography , Scientists -- Biography
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:3269 , http://hdl.handle.net/10962/d1020326
- Description: While researchers debate the value of psychobiographical research, interest in this area is growing on a national and international basis. Every year, the number of psychobiographical studies at universities in South Africa is growing. Psychobiographical research is qualitative research that utilises psychological theory to explore and describe the lives of extraordinary individuals. The primary aim of this psychobiography was to examine the life of Marie Curie (1867–1934) by employing developmental psychologist and psychoanalyst Erik Erikson’s (1959) theory of psychosocial personality development. Marie Curie was chosen as the research subject because of the researcher’s personal interest and the subject’s prominence as a female scientist. She was a Polish-born and naturalised French scientist who conducted pioneering research on radioactivity. Marie Curie’s ground-breaking discoveries changed the way scientists think about matter and energy and introduced a new era in medical knowledge and the treatment of disease. Her life exemplifies a love of science, commitment, and perseverance. Data were collected from several primary and secondary sources on Marie Curie’s life. The researcher developed a data-collection and analysis matrix to facilitate the systematic collection of data and analysis according to Erikson’s stage theory of psychosocial personality development. This psychobiography suggests that unresolved infantile and early childhood crises gave rise to personality traits that eventually contributed to Curie’s extraordinariness. In the case of Curie, personality traits that are often regarded as atypical or malignant, ironically encouraged perseverance, creativity, and productivity. This study complements the psychobiographical studies done in South Africa on extraordinary individuals. It demonstrated the value of psychobiographical research as a teaching instrument, revealed the usefulness of Erikson’s theory, and illustrated the uniqueness of individuals.
- Full Text:
- Authors: Roets, Elmeret
- Date: 2016
- Subjects: Curie, Marie -- 1867-1934 -- Psychology , Women chemists -- Poland -- Biography , Scientists -- Biography
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:3269 , http://hdl.handle.net/10962/d1020326
- Description: While researchers debate the value of psychobiographical research, interest in this area is growing on a national and international basis. Every year, the number of psychobiographical studies at universities in South Africa is growing. Psychobiographical research is qualitative research that utilises psychological theory to explore and describe the lives of extraordinary individuals. The primary aim of this psychobiography was to examine the life of Marie Curie (1867–1934) by employing developmental psychologist and psychoanalyst Erik Erikson’s (1959) theory of psychosocial personality development. Marie Curie was chosen as the research subject because of the researcher’s personal interest and the subject’s prominence as a female scientist. She was a Polish-born and naturalised French scientist who conducted pioneering research on radioactivity. Marie Curie’s ground-breaking discoveries changed the way scientists think about matter and energy and introduced a new era in medical knowledge and the treatment of disease. Her life exemplifies a love of science, commitment, and perseverance. Data were collected from several primary and secondary sources on Marie Curie’s life. The researcher developed a data-collection and analysis matrix to facilitate the systematic collection of data and analysis according to Erikson’s stage theory of psychosocial personality development. This psychobiography suggests that unresolved infantile and early childhood crises gave rise to personality traits that eventually contributed to Curie’s extraordinariness. In the case of Curie, personality traits that are often regarded as atypical or malignant, ironically encouraged perseverance, creativity, and productivity. This study complements the psychobiographical studies done in South Africa on extraordinary individuals. It demonstrated the value of psychobiographical research as a teaching instrument, revealed the usefulness of Erikson’s theory, and illustrated the uniqueness of individuals.
- Full Text:
Measuring changes in residential segregation in Port Elizabeth, South Africa, from 1996-2011
- Authors: Odayar, Luveshni
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3641 , vital:20532
- Description: Racial segregation and inequality were the prime objectives of the colonial and apartheid spatial planning policies that governed the spatial development of the South African urban landscape. Since South Africa’s democratic transition after 1994, efforts have been made by government to facilitate racial integration and transform the apartheid urban fabric. Research into post-apartheid segregation is crucial to assess the success of governmental actions enacted thus far, while informing future spatial planning strategies. Most studies of these processes have relied solely on dichotomous indices to measure the extent of segregation between two groups. Few have utilized multi-group indices, which are more suited to investigating changes in multi-ethnic cases. Furthermore, the segregation indices used are typically aspatial. This study investigates the extent to which the segregationist legacy prevails in Port Elizabeth, a place widely considered to be the founding city of urban racial segregation. It also aims to investigate the impact of geographical scale on segregation. Theil’s multi-group Entropy Index and Duncan and Duncan’s Dissimilarity Index were derived from racial population data from the 1996, 2001 and 2011 National Censuses, and GIS was used to map changes in racial diversity both at tract level and across a range of geographical scales. To generate a more holistic understanding of the observed trends, statistical tests were performed to relate the observed patterns to socio-economic determinants, and feedback from the relevant government department was obtained. The results from the entropy indices reveal that segregation levels in Port Elizabeth have declined but still remain high: 84.6 % (1996), 79.2 % (2001) to 71.5 % (2011). This is a similar trend to those found in Cape Town and Johannesburg. The integration that did occur was characterized by one-way patterns of movement into former-White areas; this was predominantly confined to the Indian population, and to a lesser extent, the Coloured population. The vast majority of the African population remains confined to their former designated location areas. The White population remains the most segregated group, despite most of the racial integration occurring in former-White areas. Interview results and statistical tests revealed that persisting racial discrepancies in socio-economic factors (income, employment and education) can be considered major drivers influencing the observed trends in racial integration and persisting desegregation, as well as self-segregation.
- Full Text:
- Authors: Odayar, Luveshni
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3641 , vital:20532
- Description: Racial segregation and inequality were the prime objectives of the colonial and apartheid spatial planning policies that governed the spatial development of the South African urban landscape. Since South Africa’s democratic transition after 1994, efforts have been made by government to facilitate racial integration and transform the apartheid urban fabric. Research into post-apartheid segregation is crucial to assess the success of governmental actions enacted thus far, while informing future spatial planning strategies. Most studies of these processes have relied solely on dichotomous indices to measure the extent of segregation between two groups. Few have utilized multi-group indices, which are more suited to investigating changes in multi-ethnic cases. Furthermore, the segregation indices used are typically aspatial. This study investigates the extent to which the segregationist legacy prevails in Port Elizabeth, a place widely considered to be the founding city of urban racial segregation. It also aims to investigate the impact of geographical scale on segregation. Theil’s multi-group Entropy Index and Duncan and Duncan’s Dissimilarity Index were derived from racial population data from the 1996, 2001 and 2011 National Censuses, and GIS was used to map changes in racial diversity both at tract level and across a range of geographical scales. To generate a more holistic understanding of the observed trends, statistical tests were performed to relate the observed patterns to socio-economic determinants, and feedback from the relevant government department was obtained. The results from the entropy indices reveal that segregation levels in Port Elizabeth have declined but still remain high: 84.6 % (1996), 79.2 % (2001) to 71.5 % (2011). This is a similar trend to those found in Cape Town and Johannesburg. The integration that did occur was characterized by one-way patterns of movement into former-White areas; this was predominantly confined to the Indian population, and to a lesser extent, the Coloured population. The vast majority of the African population remains confined to their former designated location areas. The White population remains the most segregated group, despite most of the racial integration occurring in former-White areas. Interview results and statistical tests revealed that persisting racial discrepancies in socio-economic factors (income, employment and education) can be considered major drivers influencing the observed trends in racial integration and persisting desegregation, as well as self-segregation.
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Meat and its meanings: representations of meat-eating in selected works of South African literature
- Authors: Coetzer, Theo
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/3860 , vital:20550
- Description: This thesis is situated within the burgeoning field of literary animal studies. Its aim is to analyse critically the way in which animals-as-meat are represented in South African literature. While meat pervades our lives and literature, there exists very little scholarship that considers literary depictions of meat. The thesis suggests that literary texts can offer useful reflections of the cultural environments in which they are immersed and, furthermore, can encourage what J. M. Coetzee calls the ‘sympathetic imagination’ in relation to animals. The dissertation offers close readings of three primary texts, while also drawing on a broader range of local fiction. Chapter 1 discusses Eben Venter’s Trencherman, with a specific focus on Venter’s use of the plaasroman and literary dystopia. Both genres are important to the novel’s ubiquitous depictions of meat, serving to illustrate some of the destructive, and irreversible, excesses associated with traditional Afrikaner culture in South Africa. Meat consumption is not only depicted as being among these harmful excesses, but also comes to represent them collectively. Chapter 2 offers a reading of Zakes Mda’s The Madonna of Excelsior, paying particular attention to its representation of the intersection between the objectification of women’s bodies and the transformation of animals into meat. In my approach to this text, I make use of Carol J. Adams’ notion of the ‘absent referent’. I suggest that while Mda ostensibly considers the subjugation of both women and animals, the novel does not ultimately demonstrate concern for animals in their own right. The final chapter considers the representation of suffering in Damon Galgut’s The Beautiful Screaming of Pigs. I argue that Galgut’s text is alone among the three primary texts in its attention to the animal suffering inextricably linked to meat production. The novel depicts this suffering as being comparable to human suffering, while simultaneously demonstrating humans’ indifference to their animal fellows. The dissertation concludes that while meat is infused with a range of meanings in South African literature, the most obvious and intrinsic one – the fact of animal death and animal suffering – is the one most often ignored.
- Full Text:
- Authors: Coetzer, Theo
- Date: 2016
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10962/3860 , vital:20550
- Description: This thesis is situated within the burgeoning field of literary animal studies. Its aim is to analyse critically the way in which animals-as-meat are represented in South African literature. While meat pervades our lives and literature, there exists very little scholarship that considers literary depictions of meat. The thesis suggests that literary texts can offer useful reflections of the cultural environments in which they are immersed and, furthermore, can encourage what J. M. Coetzee calls the ‘sympathetic imagination’ in relation to animals. The dissertation offers close readings of three primary texts, while also drawing on a broader range of local fiction. Chapter 1 discusses Eben Venter’s Trencherman, with a specific focus on Venter’s use of the plaasroman and literary dystopia. Both genres are important to the novel’s ubiquitous depictions of meat, serving to illustrate some of the destructive, and irreversible, excesses associated with traditional Afrikaner culture in South Africa. Meat consumption is not only depicted as being among these harmful excesses, but also comes to represent them collectively. Chapter 2 offers a reading of Zakes Mda’s The Madonna of Excelsior, paying particular attention to its representation of the intersection between the objectification of women’s bodies and the transformation of animals into meat. In my approach to this text, I make use of Carol J. Adams’ notion of the ‘absent referent’. I suggest that while Mda ostensibly considers the subjugation of both women and animals, the novel does not ultimately demonstrate concern for animals in their own right. The final chapter considers the representation of suffering in Damon Galgut’s The Beautiful Screaming of Pigs. I argue that Galgut’s text is alone among the three primary texts in its attention to the animal suffering inextricably linked to meat production. The novel depicts this suffering as being comparable to human suffering, while simultaneously demonstrating humans’ indifference to their animal fellows. The dissertation concludes that while meat is infused with a range of meanings in South African literature, the most obvious and intrinsic one – the fact of animal death and animal suffering – is the one most often ignored.
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Mesopredator release and the effectiveness of camera traps for estimating mammal abundances in the Eastern Cape, South Africa
- Authors: Taylor, Jonathan Michael
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3587 , vital:20527
- Description: Remotely operated cameras (camera traps) have become an indispensable tool for many ecologists, particularly those studying rare and elusive animals. A plethora of camera trap makes and models are now commercially available, yet the effects of their varying design features on the quality and quantity of data recorded remains principally unknown. Better understanding of differing camera trap designs is needed before adequate management policies can be implemented, especially when the aim is to protect vulnerable and endangered species such as many carnivores. Habitat loss and human conflict has prompted worldwide declines of apex predator populations. Following this, many smaller predators have undergone population ‘explosions’ due to the lack of top-down forcing, a phenomenon known as mesopredator release. Land use changes in the Eastern Cape of South Africa have caused extensive degradation and fragmentation of the Subtropical Thicket Biome. In addition, coupled with anthropogenic persecution, apex predators including lions (Panthera leo), leopards (P. pardus), and brown hyaenas (Hyaena brunnea) have been extirpated from large areas of their historic range. Removal of these apex predators may provide opportunity for mesopredators, such as black-backed jackals (Canis mesomelas) and caracals (Caracal caracal), to be released from top-down forcing and possibly initiate trophic cascade effects. Therefore, using randomly distributed camera traps, my study aimed to explore the quality and quantity of data collected by different camera trap designs, and to investigate the mesopredator release hypothesis in the Eastern Cape of South Africa. A total of 2,989 trap nights was used to compare camera trap designs. Camera traps with narrow detection zones and fast trigger speeds (≤ 0.25 seconds) recorded a higher diversity of carnivores, but there was no significant difference in the relative abundances of carnivore species recorded by different camera trap models. A total of 19,659 trap nights was used to assess mesopredator relative abundance, occupancy, distribution and daily activity patterns at one site with, and one site without, apex predators. Consistent with the mesopredator release hypothesis, black-backed jackal relative abundance was significantly higher in the absence of apex predators, and this was supported by occupancy analyses. Further, black-backed jackal distribution was significantly concentrated in areas where apex predator activity was low, possibly indicating spatial avoidance. There was no significant difference in caracal relative abundance, occupancy, distribution, or daily activity between sites. These results provide the first indication of mesopredator release of blackbacked jackals in the Eastern Cape. The implications of black-backed jackal release including prey population structure, local extinctions, altered seed dispersal and disease dynamics are discussed.
- Full Text:
- Authors: Taylor, Jonathan Michael
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3587 , vital:20527
- Description: Remotely operated cameras (camera traps) have become an indispensable tool for many ecologists, particularly those studying rare and elusive animals. A plethora of camera trap makes and models are now commercially available, yet the effects of their varying design features on the quality and quantity of data recorded remains principally unknown. Better understanding of differing camera trap designs is needed before adequate management policies can be implemented, especially when the aim is to protect vulnerable and endangered species such as many carnivores. Habitat loss and human conflict has prompted worldwide declines of apex predator populations. Following this, many smaller predators have undergone population ‘explosions’ due to the lack of top-down forcing, a phenomenon known as mesopredator release. Land use changes in the Eastern Cape of South Africa have caused extensive degradation and fragmentation of the Subtropical Thicket Biome. In addition, coupled with anthropogenic persecution, apex predators including lions (Panthera leo), leopards (P. pardus), and brown hyaenas (Hyaena brunnea) have been extirpated from large areas of their historic range. Removal of these apex predators may provide opportunity for mesopredators, such as black-backed jackals (Canis mesomelas) and caracals (Caracal caracal), to be released from top-down forcing and possibly initiate trophic cascade effects. Therefore, using randomly distributed camera traps, my study aimed to explore the quality and quantity of data collected by different camera trap designs, and to investigate the mesopredator release hypothesis in the Eastern Cape of South Africa. A total of 2,989 trap nights was used to compare camera trap designs. Camera traps with narrow detection zones and fast trigger speeds (≤ 0.25 seconds) recorded a higher diversity of carnivores, but there was no significant difference in the relative abundances of carnivore species recorded by different camera trap models. A total of 19,659 trap nights was used to assess mesopredator relative abundance, occupancy, distribution and daily activity patterns at one site with, and one site without, apex predators. Consistent with the mesopredator release hypothesis, black-backed jackal relative abundance was significantly higher in the absence of apex predators, and this was supported by occupancy analyses. Further, black-backed jackal distribution was significantly concentrated in areas where apex predator activity was low, possibly indicating spatial avoidance. There was no significant difference in caracal relative abundance, occupancy, distribution, or daily activity between sites. These results provide the first indication of mesopredator release of blackbacked jackals in the Eastern Cape. The implications of black-backed jackal release including prey population structure, local extinctions, altered seed dispersal and disease dynamics are discussed.
- Full Text:
Mesoscale mechanisms of larval transport and settlement in relation to physical factors off the south coast of South Africa: a topographic approach
- Authors: Mian, Shana Iva
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5947 , http://hdl.handle.net/10962/d1020844
- Description: The majority of benthic marine invertebrate life cycles include a meroplanktonic phase. Most marine biologists recognise that this stage could play an important role in dispersal, especially for sedentary or sessile organisms. Recent studies on larval dispersal have found that dispersal does not occur to the extent that was previously believed. Some larvae instead remain close to their natal populations through larval nearshore retention mechanisms, both active and passive. This study attempted to a) describe nearshore distribution patterns of several intertidal larvae in relation to nearshore hydrodynamics, b) infer whether larvae are active or passive in the water column and whether this differs among taxa and c) compare pelagic mussel larval abundance with settlement rates, at 2 bay and 2 open coast sites on the south coast of South Africa to note any topographical effects. At each of the four sites, pelagic samples were collected along 2 transects. Larvae and current speed data were collected at various depths (surface, mid-depth and bottom) at distances of 200, 400, 900 and 2400m offshore of the coast. Settlement samples were collected at sites that were onshore of the pelagic transects using plastic souring pads following previous studies. Pelagic larval distribution showed no effect of topography. Instead larval abundance was highly variable among sample periods and among different taxa. Slow swimming D-stage mussel larvae were found to be positively correlated with both upwelling and turbulence indices suggesting that they behave as passive particles in the water column. The abundances of larval taxa with faster swimming speeds than the D-larvae were negatively correlated with upwelling and did not correlate with turbulence. This suggests that these larvae are more active within the water column than the D-larvae which would theoretically allow them to maintain their position in the water column. Further analysis revealed that mean larval depth correlated with mean depth of shoreward moving water masses regardless of the state of upwelling. These results suggest that larvae were actively selecting the depth at which they were found presumably in order to associate themselves with shoreward moving currents. This interpretation was supported by ontogenetic patterns in the behaviour of barnacle larvae, the nauplii of which were found further offshore as they aged, and closer onshore again once they reach the faster swimming cyprid stage. Although there was no detectable effect of topography on the abundances of planktonic larvae, the settlement section of this study revealed an effect of topography, with higher settlement and recruitment rates at bay sites than at the open coast sites. Settlement rates were seen to be negatively correlated with turbulence at bay sites but not open coast sites. Recruitment rates for each sample event were positively correlated with upwelling at each site. This study found pelagic larvae to be generally active within the water column which allowed them to remain close to the shore regardless of topography and upwelling/turbulence regimes. Although meaningful correlation analyses between pelagic larval supply and settlement rates could not be conducted due to loss of settlement collectors, settlement rates were affected by local topography with higher settlement and recruitment in bay sites.
- Full Text:
- Authors: Mian, Shana Iva
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5947 , http://hdl.handle.net/10962/d1020844
- Description: The majority of benthic marine invertebrate life cycles include a meroplanktonic phase. Most marine biologists recognise that this stage could play an important role in dispersal, especially for sedentary or sessile organisms. Recent studies on larval dispersal have found that dispersal does not occur to the extent that was previously believed. Some larvae instead remain close to their natal populations through larval nearshore retention mechanisms, both active and passive. This study attempted to a) describe nearshore distribution patterns of several intertidal larvae in relation to nearshore hydrodynamics, b) infer whether larvae are active or passive in the water column and whether this differs among taxa and c) compare pelagic mussel larval abundance with settlement rates, at 2 bay and 2 open coast sites on the south coast of South Africa to note any topographical effects. At each of the four sites, pelagic samples were collected along 2 transects. Larvae and current speed data were collected at various depths (surface, mid-depth and bottom) at distances of 200, 400, 900 and 2400m offshore of the coast. Settlement samples were collected at sites that were onshore of the pelagic transects using plastic souring pads following previous studies. Pelagic larval distribution showed no effect of topography. Instead larval abundance was highly variable among sample periods and among different taxa. Slow swimming D-stage mussel larvae were found to be positively correlated with both upwelling and turbulence indices suggesting that they behave as passive particles in the water column. The abundances of larval taxa with faster swimming speeds than the D-larvae were negatively correlated with upwelling and did not correlate with turbulence. This suggests that these larvae are more active within the water column than the D-larvae which would theoretically allow them to maintain their position in the water column. Further analysis revealed that mean larval depth correlated with mean depth of shoreward moving water masses regardless of the state of upwelling. These results suggest that larvae were actively selecting the depth at which they were found presumably in order to associate themselves with shoreward moving currents. This interpretation was supported by ontogenetic patterns in the behaviour of barnacle larvae, the nauplii of which were found further offshore as they aged, and closer onshore again once they reach the faster swimming cyprid stage. Although there was no detectable effect of topography on the abundances of planktonic larvae, the settlement section of this study revealed an effect of topography, with higher settlement and recruitment rates at bay sites than at the open coast sites. Settlement rates were seen to be negatively correlated with turbulence at bay sites but not open coast sites. Recruitment rates for each sample event were positively correlated with upwelling at each site. This study found pelagic larvae to be generally active within the water column which allowed them to remain close to the shore regardless of topography and upwelling/turbulence regimes. Although meaningful correlation analyses between pelagic larval supply and settlement rates could not be conducted due to loss of settlement collectors, settlement rates were affected by local topography with higher settlement and recruitment in bay sites.
- Full Text:
Movement patterns of Cape stumpnose, Rhabdosargus holubi (Sparidae), in the Kowie Estuary, South Africa
- Authors: Grant, Gareth Neil
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/982 , vital:20010
- Description: Rhabdosargus holubi is an ubiquitous estuary-dependent fishery species endemic to southern Africa. Although aspects of its recruitment dynamics from sea to estuary have received considerable research attention, little is known about its movement behaviour within estuarine systems. Fishery surveys have also revealed that R. holubi is a dominant species in catches within several temperate estuaries in South Africa. Therefore, investigating movement behaviour is fundamental to understanding the ecology of this species and providing a means for implementing effective fisheries management strategies. This study made use of passive acoustic telemetry to quantify the movement patterns of juvenile R. holubi in the Kowie Estuary, in the Eastern Cape Province of South Africa. Previous studies have revealed that surgically implanted transmitters may have adverse effects on the physiology and behaviour of tagged fish. Therefore, due to the small size of juvenile R. holubi, an a priori transmitter-effect experiment was undertaken. This experiment revealed that juvenile R. holubi (146-217 mm fork length) were not adversely affected by the surgical implantation of acoustic transmitters (7 mm Ø, 1.6 g out of water) and hence acoustic telemetry was well suited to monitoring the movements of this species. A 4-month telemetry study evaluated the movement patterns of 21 juveniles (140-190 mm fork length) tagged in three equal batches along the length of the estuary. Specific aspects of their movement included space use patterns, habitat connectivity, and the influences of geophysical cycles and environmental variables. Tagged fish exhibited high residency, which varied between each release site area. The mean length of estuary used was greater for the upper batch (15.65 ± 6.49 km) than the middle and lower batches (7.36 ± 3.68 and 2.67 ± 2 km, respectively). In terms of habitat connectivity, once the tagged fish left the estuary, they generally did not return. Tagged R. holubi spent the majority (83%) of their monitoring periods within the estuarine environment, with the sea (16%) and riverine (1%) environments being utilised to a lesser extent. Diel and tidal cycles influenced the movement patterns of juvenile R. holubi. However, the high levels of residency meant that fine-scale movements were difficult to detect due to the acoustic receiver deployment configuration (i.e. receivers moored one kilometer apart). The influence of environmental variables on the movement of individuals, modelled with general linear mixed models (GLMMs), revealed that the effects of river inflow and water temperature were greatest. Increased river inflow caused individuals to use larger portions of the estuary. Increased water temperature, particularly river temperature, caused individuals to shift their distributions downstream (towards the mouth of the estuary). This study highlighted the importance of estuarine nursery habitats to R. holubi, suggesting that a loss or reduction of healthy estuarine habitats may lead to significant declines in the abundance of this species. Furthermore, extreme resident behaviour suggests that no-take area closures (estuarine protected areas) would be an effective management strategy for this important fishery species.
- Full Text:
- Authors: Grant, Gareth Neil
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/982 , vital:20010
- Description: Rhabdosargus holubi is an ubiquitous estuary-dependent fishery species endemic to southern Africa. Although aspects of its recruitment dynamics from sea to estuary have received considerable research attention, little is known about its movement behaviour within estuarine systems. Fishery surveys have also revealed that R. holubi is a dominant species in catches within several temperate estuaries in South Africa. Therefore, investigating movement behaviour is fundamental to understanding the ecology of this species and providing a means for implementing effective fisheries management strategies. This study made use of passive acoustic telemetry to quantify the movement patterns of juvenile R. holubi in the Kowie Estuary, in the Eastern Cape Province of South Africa. Previous studies have revealed that surgically implanted transmitters may have adverse effects on the physiology and behaviour of tagged fish. Therefore, due to the small size of juvenile R. holubi, an a priori transmitter-effect experiment was undertaken. This experiment revealed that juvenile R. holubi (146-217 mm fork length) were not adversely affected by the surgical implantation of acoustic transmitters (7 mm Ø, 1.6 g out of water) and hence acoustic telemetry was well suited to monitoring the movements of this species. A 4-month telemetry study evaluated the movement patterns of 21 juveniles (140-190 mm fork length) tagged in three equal batches along the length of the estuary. Specific aspects of their movement included space use patterns, habitat connectivity, and the influences of geophysical cycles and environmental variables. Tagged fish exhibited high residency, which varied between each release site area. The mean length of estuary used was greater for the upper batch (15.65 ± 6.49 km) than the middle and lower batches (7.36 ± 3.68 and 2.67 ± 2 km, respectively). In terms of habitat connectivity, once the tagged fish left the estuary, they generally did not return. Tagged R. holubi spent the majority (83%) of their monitoring periods within the estuarine environment, with the sea (16%) and riverine (1%) environments being utilised to a lesser extent. Diel and tidal cycles influenced the movement patterns of juvenile R. holubi. However, the high levels of residency meant that fine-scale movements were difficult to detect due to the acoustic receiver deployment configuration (i.e. receivers moored one kilometer apart). The influence of environmental variables on the movement of individuals, modelled with general linear mixed models (GLMMs), revealed that the effects of river inflow and water temperature were greatest. Increased river inflow caused individuals to use larger portions of the estuary. Increased water temperature, particularly river temperature, caused individuals to shift their distributions downstream (towards the mouth of the estuary). This study highlighted the importance of estuarine nursery habitats to R. holubi, suggesting that a loss or reduction of healthy estuarine habitats may lead to significant declines in the abundance of this species. Furthermore, extreme resident behaviour suggests that no-take area closures (estuarine protected areas) would be an effective management strategy for this important fishery species.
- Full Text:
Nanocomposites of carbon nanomaterials and metallophthalocyanines : applications towards electrocatalysis
- Authors: Nyoni, Stephen
- Date: 2016
- Subjects: Nanocomposites (Materials) , Nanostructured materials , Electrocatalysis
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4561 , http://hdl.handle.net/10962/d1020846
- Description: Nanohybrid materials have been prepared and examined for their electrocatalytic activity. The nanocomposites have been prepared from carbon nanomaterials (multiwalled carbon nanotubes (MWCNTs) and graphene nanosheets), cadmium selenide quantum dots and metallophthalocyanines (MPcs). The MPcs used in this work are cobalt tetraamino-phthalocyanine (CoTAPc) and tetra (4-(4,6-diaminopyrimidin-2-ylthio) phthalocyaninatocobalt (II)) (CoPyPc). Their activity has also been explored in different forms; polymeric MPcs, iodine doped MPcs and covalently linked MPcs. The premixed drop-dry, sequential drop-dry and electropolymerisation electrode modification techniques were used to prepare nanocomposite catalysts on the glassy carbon electrode (GCE) surface. The sequential drop dry technique for MPc and MWCNTs gave better catalytic responses in terms of limit of detection, catalytic and electron transfer rate constants relative to the premixed. MWCNTs and CdSe-QDs have been used as intercalating agents to reduce restacking of graphene nanosheets during nanocomposite preparation. Voltammetry, chronoamperometry, scanning electrochemical microscopy and electrochemical impedance spectroscopy methods are used for electrochemical characterization modified GCE. X-ray photoelectron spectroscopy, X-ray diffractometry, transmission electron microscopy, scanning electron microscopy, infra-red spectroscopy, Raman spectroscopy were used to explore surface functionalities, morphology and topography of the nanocomposites. Electrocatalytic activity and possible applications of the modified electrodes were tested using oxygen reduction reaction, l-cysteine oxidation and paraquat reduction. Activity of nanocomposites was found superior over individual nanomaterials in these applications.
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- Authors: Nyoni, Stephen
- Date: 2016
- Subjects: Nanocomposites (Materials) , Nanostructured materials , Electrocatalysis
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4561 , http://hdl.handle.net/10962/d1020846
- Description: Nanohybrid materials have been prepared and examined for their electrocatalytic activity. The nanocomposites have been prepared from carbon nanomaterials (multiwalled carbon nanotubes (MWCNTs) and graphene nanosheets), cadmium selenide quantum dots and metallophthalocyanines (MPcs). The MPcs used in this work are cobalt tetraamino-phthalocyanine (CoTAPc) and tetra (4-(4,6-diaminopyrimidin-2-ylthio) phthalocyaninatocobalt (II)) (CoPyPc). Their activity has also been explored in different forms; polymeric MPcs, iodine doped MPcs and covalently linked MPcs. The premixed drop-dry, sequential drop-dry and electropolymerisation electrode modification techniques were used to prepare nanocomposite catalysts on the glassy carbon electrode (GCE) surface. The sequential drop dry technique for MPc and MWCNTs gave better catalytic responses in terms of limit of detection, catalytic and electron transfer rate constants relative to the premixed. MWCNTs and CdSe-QDs have been used as intercalating agents to reduce restacking of graphene nanosheets during nanocomposite preparation. Voltammetry, chronoamperometry, scanning electrochemical microscopy and electrochemical impedance spectroscopy methods are used for electrochemical characterization modified GCE. X-ray photoelectron spectroscopy, X-ray diffractometry, transmission electron microscopy, scanning electron microscopy, infra-red spectroscopy, Raman spectroscopy were used to explore surface functionalities, morphology and topography of the nanocomposites. Electrocatalytic activity and possible applications of the modified electrodes were tested using oxygen reduction reaction, l-cysteine oxidation and paraquat reduction. Activity of nanocomposites was found superior over individual nanomaterials in these applications.
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