A multispectral and machine learning approach to early stress classification in plants
- Authors: Poole, Louise Carmen
- Date: 2022-04-06
- Subjects: Machine learning , Neural networks (Computer science) , Multispectral imaging , Image processing , Plant stress detection
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232410 , vital:49989
- Description: Crop loss and failure can impact both a country’s economy and food security, often to devastating effects. As such, the importance of successfully detecting plant stresses early in their development is essential to minimize spread and damage to crop production. Identification of the stress and the stress-causing agent is the most critical and challenging step in plant and crop protection. With the development of and increase in ease of access to new equipment and technology in recent years, the use of spectroscopy in the early detection of plant diseases has become notably popular. This thesis narrows down the most suitable multispectral imaging techniques and machine learning algorithms for early stress detection. Datasets were collected of visible images and multispectral images. Dehydration was selected as the plant stress type for the main experiments, and data was collected from six plant species typically used in agriculture. Key contributions of this thesis include multispectral and visible datasets showing plant dehydration as well as a separate preliminary dataset on plant disease. Promising results on dehydration showed statistically significant accuracy improvements in the multispectral imaging compared to visible imaging for early stress detection, with multispectral input obtaining a 92.50% accuracy over visible input’s 77.50% on general plant species. The system was effective at stress detection on known plant species, with multispectral imaging introducing greater improvement to early stress detection than advanced stress detection. Furthermore, strong species discrimination was achieved when exclusively testing either early or advanced dehydration against healthy species. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Sciences, 2022
- Full Text:
- Authors: Poole, Louise Carmen
- Date: 2022-04-06
- Subjects: Machine learning , Neural networks (Computer science) , Multispectral imaging , Image processing , Plant stress detection
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232410 , vital:49989
- Description: Crop loss and failure can impact both a country’s economy and food security, often to devastating effects. As such, the importance of successfully detecting plant stresses early in their development is essential to minimize spread and damage to crop production. Identification of the stress and the stress-causing agent is the most critical and challenging step in plant and crop protection. With the development of and increase in ease of access to new equipment and technology in recent years, the use of spectroscopy in the early detection of plant diseases has become notably popular. This thesis narrows down the most suitable multispectral imaging techniques and machine learning algorithms for early stress detection. Datasets were collected of visible images and multispectral images. Dehydration was selected as the plant stress type for the main experiments, and data was collected from six plant species typically used in agriculture. Key contributions of this thesis include multispectral and visible datasets showing plant dehydration as well as a separate preliminary dataset on plant disease. Promising results on dehydration showed statistically significant accuracy improvements in the multispectral imaging compared to visible imaging for early stress detection, with multispectral input obtaining a 92.50% accuracy over visible input’s 77.50% on general plant species. The system was effective at stress detection on known plant species, with multispectral imaging introducing greater improvement to early stress detection than advanced stress detection. Furthermore, strong species discrimination was achieved when exclusively testing either early or advanced dehydration against healthy species. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Sciences, 2022
- Full Text:
Adolescents and coaches/trainers perspectives of ergogenic sports supplement use within South African private high schools
- Authors: Butler, Nicholas John
- Date: 2022-04-06
- Subjects: Dietary supplements , Energy metabolism , Teenagers South Africa , Teenagers Physiology South Africa , Teenagers Substance use South Africa , Coaches (Athletics) South Africa , Athletic trainers South Africa , Private schools South Africa , Ergogenic aids
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232443 , vital:49992
- Description: Sports supplements, also referred to as ergogenic aids, are used because of the assertion that they can enhance physical or athletic performance and/or physical appearance. Commonly used sports supplements include creatines, proteins, amino acids, stimulants, and in some cases pro-hormones. There is a relatively high and increasing prevalence of sports supplement use by the general population globally and in South Africa, particularly among adolescents and young adults due to various factors. While some research has explored supplement use among adolescents in a school setting, no study has explored this across the private school system in South Africa. Additionally, given the important role that coaches/trainers play in adolescent development, it is critical to also understand the role that they play regarding adolescent supplement use, given that there has been limited research around this topic in South Africa. Therefore, there were two aims of this study; Firstly, this study explored the prevalence and perceptions (knowledge; attitudes; beliefs) of sports supplements among South African private high school adolescents. Secondly, this study explored the perceptions (knowledge; attitudes; application of knowledge) towards sports supplements among adolescent coaches/trainers in South African private high schools. Considering the dual aim of this study, this thesis was structured as a two-part research study. Both parts took the form of a cross-sectional design, using an online questionnaire to collect qualitative and quantitative data. In total, a cohort of n=50 adolescents and n=49 coaches/trainers participated. Adolescent participants reported a high prevalence of sports supplement use (62%) with their main reasons for using them being recovery and performance. Adolescents were primarily influenced/advised by friends and coaches/trainers to start using sports supplements. Coaches/trainers primarily relied on other coaches/trainers and internet advertising/sites as a main source of information. Less than half of the participants from both groups reported having any formal education or training related to sports nutrition or sports supplements. Both groups thought that these products are being misused by adolescents, which may account for why a portion of the adolescent participants reported experiencing adverse side-effects from using sports supplements, and a few coach/trainer participants reported witnessing this in their practice. This may be a result of the professionalisation of school sport which places pressure on athletes and their coaches/trainers to perform and may in turn be the reason why some adolescents reported that they would use, and some coaches/trainers reported they would recommend the use of sports supplements even if they were aware of risk/dangers involved. Thus, there is a need for education/training among South African high school adolescents and their coaches/trainers with respect to the use of sports supplements, so that they can make informed decisions from reliable sources of information or advice in order to use these products safely and effectively. , Thesis (MSc) -- Faculty of Science, Human Kinetics and Ergonomics, 2022
- Full Text:
- Authors: Butler, Nicholas John
- Date: 2022-04-06
- Subjects: Dietary supplements , Energy metabolism , Teenagers South Africa , Teenagers Physiology South Africa , Teenagers Substance use South Africa , Coaches (Athletics) South Africa , Athletic trainers South Africa , Private schools South Africa , Ergogenic aids
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232443 , vital:49992
- Description: Sports supplements, also referred to as ergogenic aids, are used because of the assertion that they can enhance physical or athletic performance and/or physical appearance. Commonly used sports supplements include creatines, proteins, amino acids, stimulants, and in some cases pro-hormones. There is a relatively high and increasing prevalence of sports supplement use by the general population globally and in South Africa, particularly among adolescents and young adults due to various factors. While some research has explored supplement use among adolescents in a school setting, no study has explored this across the private school system in South Africa. Additionally, given the important role that coaches/trainers play in adolescent development, it is critical to also understand the role that they play regarding adolescent supplement use, given that there has been limited research around this topic in South Africa. Therefore, there were two aims of this study; Firstly, this study explored the prevalence and perceptions (knowledge; attitudes; beliefs) of sports supplements among South African private high school adolescents. Secondly, this study explored the perceptions (knowledge; attitudes; application of knowledge) towards sports supplements among adolescent coaches/trainers in South African private high schools. Considering the dual aim of this study, this thesis was structured as a two-part research study. Both parts took the form of a cross-sectional design, using an online questionnaire to collect qualitative and quantitative data. In total, a cohort of n=50 adolescents and n=49 coaches/trainers participated. Adolescent participants reported a high prevalence of sports supplement use (62%) with their main reasons for using them being recovery and performance. Adolescents were primarily influenced/advised by friends and coaches/trainers to start using sports supplements. Coaches/trainers primarily relied on other coaches/trainers and internet advertising/sites as a main source of information. Less than half of the participants from both groups reported having any formal education or training related to sports nutrition or sports supplements. Both groups thought that these products are being misused by adolescents, which may account for why a portion of the adolescent participants reported experiencing adverse side-effects from using sports supplements, and a few coach/trainer participants reported witnessing this in their practice. This may be a result of the professionalisation of school sport which places pressure on athletes and their coaches/trainers to perform and may in turn be the reason why some adolescents reported that they would use, and some coaches/trainers reported they would recommend the use of sports supplements even if they were aware of risk/dangers involved. Thus, there is a need for education/training among South African high school adolescents and their coaches/trainers with respect to the use of sports supplements, so that they can make informed decisions from reliable sources of information or advice in order to use these products safely and effectively. , Thesis (MSc) -- Faculty of Science, Human Kinetics and Ergonomics, 2022
- Full Text:
Influence of argon ion implantation on the thermoluminescence properties of aluminium oxide
- Authors: Khabo, Bokang
- Date: 2022-04-06
- Subjects: Aluminum oxide , Thermoluminescence , Ion implantation , Kinetic analysis , Oxygen vacancies , Argon , Irradiation
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/234220 , vital:50173
- Description: The influence of argon ion implantation on the thermoluminescence properties (TL) of aluminium oxide (alumina) was investigated. Aluminium oxide (Al2O3) samples were implanted with 80 keV Ar ions. An unimplanted sample and samples implanted at fluences of 1×1014, 5×1014, 1×1015, 5×1015, 1×1016 Ar+/cm2 were irradiated at a dose of 40 Gy and heated at a rate of 1°C/s using a Risø reader model TL/OSL-DA-20 equipped with a Hoya U-340 filter. The thermoluminescence glow curves showed five distinct peaks with main peaks at 178°C, 188°C, 176°C, 208°C, 216°C and 204°C for the unimplanted sample as well as implanted samples. The peak positions of the samples were independent of the irradiation dose suggesting that the samples were characterised by first order kinetics. This was also confirmed by the TM-TSTOP analysis. It was observed that the TL intensity decreases with fluence of implantation. This observation suggests that the concentration of electron traps responsible for thermoluminescence decreases with ion implantation. The decrease in electron concentration might be due to the formation of non-radiative transition bands or the creation of defect clusters and extended defects following the ion implantation and ion fluence increases. The stopping and range of atoms in matter (SRIM) program was used to correlate the TL response of Al2O3 with defects under ion implantation. Subsequent to ion implantation, it was found that the number of oxygen vacancies which are related to electron traps are higher than the number of aluminium vacancies. Kinetic analysis was carried out using the initial rise, Chens peak shape, various heating rate, the whole glow curve, glow curve fitting and the isothermal decay methods. The activation energy was found to be around 0.8 eV and the frequency factor to be of the order 108 𝑠−1 regardless of the implantation fluence. This means that argon ion implantation did not affect the nature of electron traps. The dosimetric features of samples were also investigated at doses in the range of 40 – 200 Gy. Samples generally showed a superlinear response at doses less than 140 Gy and sublinear response at doses higher than 160 Gy. , Thesis (MSc) -- Faculty of Science, Physics and Electronics, 2022
- Full Text:
- Authors: Khabo, Bokang
- Date: 2022-04-06
- Subjects: Aluminum oxide , Thermoluminescence , Ion implantation , Kinetic analysis , Oxygen vacancies , Argon , Irradiation
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/234220 , vital:50173
- Description: The influence of argon ion implantation on the thermoluminescence properties (TL) of aluminium oxide (alumina) was investigated. Aluminium oxide (Al2O3) samples were implanted with 80 keV Ar ions. An unimplanted sample and samples implanted at fluences of 1×1014, 5×1014, 1×1015, 5×1015, 1×1016 Ar+/cm2 were irradiated at a dose of 40 Gy and heated at a rate of 1°C/s using a Risø reader model TL/OSL-DA-20 equipped with a Hoya U-340 filter. The thermoluminescence glow curves showed five distinct peaks with main peaks at 178°C, 188°C, 176°C, 208°C, 216°C and 204°C for the unimplanted sample as well as implanted samples. The peak positions of the samples were independent of the irradiation dose suggesting that the samples were characterised by first order kinetics. This was also confirmed by the TM-TSTOP analysis. It was observed that the TL intensity decreases with fluence of implantation. This observation suggests that the concentration of electron traps responsible for thermoluminescence decreases with ion implantation. The decrease in electron concentration might be due to the formation of non-radiative transition bands or the creation of defect clusters and extended defects following the ion implantation and ion fluence increases. The stopping and range of atoms in matter (SRIM) program was used to correlate the TL response of Al2O3 with defects under ion implantation. Subsequent to ion implantation, it was found that the number of oxygen vacancies which are related to electron traps are higher than the number of aluminium vacancies. Kinetic analysis was carried out using the initial rise, Chens peak shape, various heating rate, the whole glow curve, glow curve fitting and the isothermal decay methods. The activation energy was found to be around 0.8 eV and the frequency factor to be of the order 108 𝑠−1 regardless of the implantation fluence. This means that argon ion implantation did not affect the nature of electron traps. The dosimetric features of samples were also investigated at doses in the range of 40 – 200 Gy. Samples generally showed a superlinear response at doses less than 140 Gy and sublinear response at doses higher than 160 Gy. , Thesis (MSc) -- Faculty of Science, Physics and Electronics, 2022
- Full Text:
Large and multi scale mechanistic modeling of Diels-Alder reactions
- Authors: Isamura, Bienfait Kabuyaya
- Date: 2022-04-06
- Subjects: Computational chemistry , Diels-Alder reaction , Python (Computer program language) , Reaction force theory , Fullerenes , Diolefins , AMADAR (Automated workflow for Mechanistic Analysis of Diels-Alder Reactions , ONIOM
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232317 , vital:49981
- Description: The [4+2] cycloaddition reaction between conjugated dienes and substituted alkenes is known as the Diels-Alder (DA) reaction, in honor of two German chemists, Otto Diels and Kurt Alder, who first reported this marvelous chemical transformation. The DA reaction is one of the most popular reactions in organic chemistry, allowing for the regio- and stereospecific establishment of six-membered rings with up to four stereogenic centers. This pericyclic reaction has found many applications in areas as diverse as natural products chemistry, polymer chemistry, and agrochemistry. Over the past decades, the mechanism of the Diels-Alder (DA) reaction has been the subject of numerous studies, dealing with questions as diverse as the mechanistic pathway, the synchronicity, the use of catalysts, the effect of solvents and salts, etc. On the other hand, as an example, fullerenes (and particularly [60] fullerene) have been found to act as good dienophiles in DA reactions to the extent that many functionalized fullerenes with interesting applications are still synthesized by reacting C60 with dienes. However, despite the very abundant literature about the mechanism of the DA reaction, some pertinent questions have been still pending, including, without being restricted to, the prediction of transition state (TS) geometries and the modeling of DA reactions involving large systems, such as those of C60 fullerene. It must be emphasized that TSs are not easy to predict and the main reason is that many existing algorithms require that the search is initiated from a good starting point (guess TS), which must be very similar to the actual TS. This problem is even more difficult when many TSs are to be located as may be the case in large-scale studies. Moreover, due to the large size of the C60 molecule, the usage of accurate high-level computational methods in the investigation of its reactivity towards dienes is computationally costly, implying the need to find the best threshold between accuracy and computational cost. Therefore, the present study was carried out to contribute to solving the problems of large-scale prediction of DA transition state geometries and the multi-scale modeling of C60 fullerene DA reactions. To address the first problem (large-scale prediction of TSs), we have developed a python program named “AMADAR”, which predicts an unlimited number of DA transition states, using only the SMILES strings of the cycloadducts. AMADAR is customizable and allows for the description of intramolecular DA reactions as well as systems resulting in competing paths. In addition, The AMADAR tool contains two separate modules that perform reaction force analyses and atomic decomposition of energy derivatives from the predicted Intrinsic Reaction Coordinates (IRC) paths. The performance of AMADAR was assessed using 2000 DA cycloadducts and showed a success rate of ~ 95%. Most of the errors were due to basis set inconsistencies or convergence issues that we are still working on. Furthermore, a set of 150 IRC paths generated by the AMADAR program were analyzed to get insight into the (a)synchronicity of DA reactions. This investigation confirmed that the reaction force constant 𝜅 (second derivatives of the system energy with respect to the reaction coordinate) was a good indicator of synchronicity in DA reactions. A close inspection of the profile of 𝜅 has enabled us to propose an alternative classification of DA reactions based on their synchronicity degree, in terms of (quasi)-synchronous, moderate asynchronous, asynchronous, and likely two-steps DA reactions. Natural population analyses seemed to indicate that the global maximum of the reaction force constant could be identified with the formation of all the bonds in the reaction site. Finally, the atomic resolution of energy derivatives suggested that the mechanism of the DA reaction involves two inner elementary processes associated with the formation of each C-C bond. A striking mechanistic difference between synchronous and asynchronous DA reactions emerging from this study is that, in asynchronous reactions, the driving and retarding forces are mainly caused by the fast and slow-forming bonds (elementary process) respectively, while in the case of synchronous ones both elementary processes retard and drive the process concomitantly and equivalently. Regarding the DA reaction of C60 fullerene that was considered to illustrate the problem of multiscale modeling, we have constructed 12 ONIOM2 and 10 ONIOM3 models combining five semi-empirical methods (AM1, PM3, PM3MM, PDDG, PM6) and the LDA(SVWN) functional in conjunction with the B3LYP/6-31G(d) level. Then, their accuracy and efficiency were assessed in comparison with the pure B3LYP/6-31G(d) level considering first the DA reaction between C60 and cyclopentadiene whose experimental data are available. Further, different DFT functionals were employed in place of the B3LYP functional to describe the higher-layer of the best ONIOM partition, and the results obtained were compared to experimental data. At this step, the ONIOM2(M06-2X/6-31 G(d): SVWN/STO-3G) model, where the higher layer encompasses the diene and pyracyclene portion of C60, was found to provide the best tradeoff between accuracy and cost, with respect to experimental data. This model showed errors lower than 2.6 and 2.0 kcal/mol for the estimation of the activation and reaction enthalpies respectively. We have also demonstrated, by comparing several ONIOM2(DFT/6-31G(d): SVWN/STO-3G) models, the importance of dispersion corrections in the accurate estimation of reaction and activation energies. Finally, we have considered a set of 21 dienes, including anthracene, 1,3-butadiene, 1,3-cyclopentadiene, furan, thiophene, selenothiophene, pyrrole and their mono-cyano and hydroxyl derivatives to get insight into the DA reaction of C60 using the best ONIOM2(M06-2X/6-31 G(d): SVWN/STO-3G) model. For a given diene and its derivatives, the analysis of frontier molecular orbitals provides a consistent explanation for the substituent effect on the activation barrier. It revealed that electron-donating (withdrawing) groups such as -OH (–CN) cut down on the activation barrier of the reaction by lowering (extending) of the HOMOdiene – LUMOC60 gap and consequently enhancing (weakening) the interaction between the two reactants. Further, the decomposition of the activation energy into the strain and interaction components suggested that, for a given diene, electron-donating groups (here –OH) diminish the height of the activation barrier not only by favoring the attractive interaction between the diene and C60, but also by reducing the strain energy of the system; the opposite effect is observed for electron-withdrawing groups (here –CN). In contrast with some previous findings on typical DA reactions, we could not infer any general rule applicable to the entire dataset for the prediction of activation energies because the latter does not correlate well with either of the TS polarity, electrophilicity of the diene, or the reaction energy. , Thesis (MSc) -- Faculty of Science, Chemistry, 2022
- Full Text:
- Authors: Isamura, Bienfait Kabuyaya
- Date: 2022-04-06
- Subjects: Computational chemistry , Diels-Alder reaction , Python (Computer program language) , Reaction force theory , Fullerenes , Diolefins , AMADAR (Automated workflow for Mechanistic Analysis of Diels-Alder Reactions , ONIOM
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232317 , vital:49981
- Description: The [4+2] cycloaddition reaction between conjugated dienes and substituted alkenes is known as the Diels-Alder (DA) reaction, in honor of two German chemists, Otto Diels and Kurt Alder, who first reported this marvelous chemical transformation. The DA reaction is one of the most popular reactions in organic chemistry, allowing for the regio- and stereospecific establishment of six-membered rings with up to four stereogenic centers. This pericyclic reaction has found many applications in areas as diverse as natural products chemistry, polymer chemistry, and agrochemistry. Over the past decades, the mechanism of the Diels-Alder (DA) reaction has been the subject of numerous studies, dealing with questions as diverse as the mechanistic pathway, the synchronicity, the use of catalysts, the effect of solvents and salts, etc. On the other hand, as an example, fullerenes (and particularly [60] fullerene) have been found to act as good dienophiles in DA reactions to the extent that many functionalized fullerenes with interesting applications are still synthesized by reacting C60 with dienes. However, despite the very abundant literature about the mechanism of the DA reaction, some pertinent questions have been still pending, including, without being restricted to, the prediction of transition state (TS) geometries and the modeling of DA reactions involving large systems, such as those of C60 fullerene. It must be emphasized that TSs are not easy to predict and the main reason is that many existing algorithms require that the search is initiated from a good starting point (guess TS), which must be very similar to the actual TS. This problem is even more difficult when many TSs are to be located as may be the case in large-scale studies. Moreover, due to the large size of the C60 molecule, the usage of accurate high-level computational methods in the investigation of its reactivity towards dienes is computationally costly, implying the need to find the best threshold between accuracy and computational cost. Therefore, the present study was carried out to contribute to solving the problems of large-scale prediction of DA transition state geometries and the multi-scale modeling of C60 fullerene DA reactions. To address the first problem (large-scale prediction of TSs), we have developed a python program named “AMADAR”, which predicts an unlimited number of DA transition states, using only the SMILES strings of the cycloadducts. AMADAR is customizable and allows for the description of intramolecular DA reactions as well as systems resulting in competing paths. In addition, The AMADAR tool contains two separate modules that perform reaction force analyses and atomic decomposition of energy derivatives from the predicted Intrinsic Reaction Coordinates (IRC) paths. The performance of AMADAR was assessed using 2000 DA cycloadducts and showed a success rate of ~ 95%. Most of the errors were due to basis set inconsistencies or convergence issues that we are still working on. Furthermore, a set of 150 IRC paths generated by the AMADAR program were analyzed to get insight into the (a)synchronicity of DA reactions. This investigation confirmed that the reaction force constant 𝜅 (second derivatives of the system energy with respect to the reaction coordinate) was a good indicator of synchronicity in DA reactions. A close inspection of the profile of 𝜅 has enabled us to propose an alternative classification of DA reactions based on their synchronicity degree, in terms of (quasi)-synchronous, moderate asynchronous, asynchronous, and likely two-steps DA reactions. Natural population analyses seemed to indicate that the global maximum of the reaction force constant could be identified with the formation of all the bonds in the reaction site. Finally, the atomic resolution of energy derivatives suggested that the mechanism of the DA reaction involves two inner elementary processes associated with the formation of each C-C bond. A striking mechanistic difference between synchronous and asynchronous DA reactions emerging from this study is that, in asynchronous reactions, the driving and retarding forces are mainly caused by the fast and slow-forming bonds (elementary process) respectively, while in the case of synchronous ones both elementary processes retard and drive the process concomitantly and equivalently. Regarding the DA reaction of C60 fullerene that was considered to illustrate the problem of multiscale modeling, we have constructed 12 ONIOM2 and 10 ONIOM3 models combining five semi-empirical methods (AM1, PM3, PM3MM, PDDG, PM6) and the LDA(SVWN) functional in conjunction with the B3LYP/6-31G(d) level. Then, their accuracy and efficiency were assessed in comparison with the pure B3LYP/6-31G(d) level considering first the DA reaction between C60 and cyclopentadiene whose experimental data are available. Further, different DFT functionals were employed in place of the B3LYP functional to describe the higher-layer of the best ONIOM partition, and the results obtained were compared to experimental data. At this step, the ONIOM2(M06-2X/6-31 G(d): SVWN/STO-3G) model, where the higher layer encompasses the diene and pyracyclene portion of C60, was found to provide the best tradeoff between accuracy and cost, with respect to experimental data. This model showed errors lower than 2.6 and 2.0 kcal/mol for the estimation of the activation and reaction enthalpies respectively. We have also demonstrated, by comparing several ONIOM2(DFT/6-31G(d): SVWN/STO-3G) models, the importance of dispersion corrections in the accurate estimation of reaction and activation energies. Finally, we have considered a set of 21 dienes, including anthracene, 1,3-butadiene, 1,3-cyclopentadiene, furan, thiophene, selenothiophene, pyrrole and their mono-cyano and hydroxyl derivatives to get insight into the DA reaction of C60 using the best ONIOM2(M06-2X/6-31 G(d): SVWN/STO-3G) model. For a given diene and its derivatives, the analysis of frontier molecular orbitals provides a consistent explanation for the substituent effect on the activation barrier. It revealed that electron-donating (withdrawing) groups such as -OH (–CN) cut down on the activation barrier of the reaction by lowering (extending) of the HOMOdiene – LUMOC60 gap and consequently enhancing (weakening) the interaction between the two reactants. Further, the decomposition of the activation energy into the strain and interaction components suggested that, for a given diene, electron-donating groups (here –OH) diminish the height of the activation barrier not only by favoring the attractive interaction between the diene and C60, but also by reducing the strain energy of the system; the opposite effect is observed for electron-withdrawing groups (here –CN). In contrast with some previous findings on typical DA reactions, we could not infer any general rule applicable to the entire dataset for the prediction of activation energies because the latter does not correlate well with either of the TS polarity, electrophilicity of the diene, or the reaction energy. , Thesis (MSc) -- Faculty of Science, Chemistry, 2022
- Full Text:
Statistical and Mathematical Learning: an application to fraud detection and prevention
- Authors: Hamlomo, Sisipho
- Date: 2022-04-06
- Subjects: Credit card fraud , Bootstrap (Statistics) , Support vector machines , Neural networks (Computer science) , Decision trees , Machine learning , Cross-validation , Imbalanced data
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/233795 , vital:50128
- Description: Credit card fraud is an ever-growing problem. There has been a rapid increase in the rate of fraudulent activities in recent years resulting in a considerable loss to several organizations, companies, and government agencies. Many researchers have focused on detecting fraudulent behaviours early using advanced machine learning techniques. However, credit card fraud detection is not a straightforward task since fraudulent behaviours usually differ for each attempt and the dataset is highly imbalanced, that is, the frequency of non-fraudulent cases outnumbers the frequency of fraudulent cases. In the case of the European credit card dataset, we have a ratio of approximately one fraudulent case to five hundred and seventy-eight non-fraudulent cases. Different methods were implemented to overcome this problem, namely random undersampling, one-sided sampling, SMOTE combined with Tomek links and parameter tuning. Predictive classifiers, namely logistic regression, decision trees, k-nearest neighbour, support vector machine and multilayer perceptrons, are applied to predict if a transaction is fraudulent or non-fraudulent. The model's performance is evaluated based on recall, precision, F1-score, the area under receiver operating characteristics curve, geometric mean and Matthew correlation coefficient. The results showed that the logistic regression classifier performed better than other classifiers except when the dataset was oversampled. , Thesis (MSc) -- Faculty of Science, Statistics, 2022
- Full Text:
- Authors: Hamlomo, Sisipho
- Date: 2022-04-06
- Subjects: Credit card fraud , Bootstrap (Statistics) , Support vector machines , Neural networks (Computer science) , Decision trees , Machine learning , Cross-validation , Imbalanced data
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/233795 , vital:50128
- Description: Credit card fraud is an ever-growing problem. There has been a rapid increase in the rate of fraudulent activities in recent years resulting in a considerable loss to several organizations, companies, and government agencies. Many researchers have focused on detecting fraudulent behaviours early using advanced machine learning techniques. However, credit card fraud detection is not a straightforward task since fraudulent behaviours usually differ for each attempt and the dataset is highly imbalanced, that is, the frequency of non-fraudulent cases outnumbers the frequency of fraudulent cases. In the case of the European credit card dataset, we have a ratio of approximately one fraudulent case to five hundred and seventy-eight non-fraudulent cases. Different methods were implemented to overcome this problem, namely random undersampling, one-sided sampling, SMOTE combined with Tomek links and parameter tuning. Predictive classifiers, namely logistic regression, decision trees, k-nearest neighbour, support vector machine and multilayer perceptrons, are applied to predict if a transaction is fraudulent or non-fraudulent. The model's performance is evaluated based on recall, precision, F1-score, the area under receiver operating characteristics curve, geometric mean and Matthew correlation coefficient. The results showed that the logistic regression classifier performed better than other classifiers except when the dataset was oversampled. , Thesis (MSc) -- Faculty of Science, Statistics, 2022
- Full Text:
The diversity and dry season habitat associations of fish communities in the Kabompo River Basin, Upper Zambezi, Zambia
- Authors: Rennie, Craig Lawrence
- Date: 2022-04-06
- Subjects: Biodiversity Zambia Kabompo District , Ecology Zambia Kabompo District , Fish communities Zambia Kabompo District , Fishes Ecology Zambia Kabompo District , Freshwater habitats Zambia Kabompo District , Fishes Effect of human beings on Zambia Kabompo District , Fishes Climatic factors Zambia Kabompo District , Mesohabitat
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232261 , vital:49976
- Description: The Zambezian headwaters contain diverse fish communities which support thriving fisheries. This region and its fishes are under pressure from multiple anthropogenic threats, including overexploitation and large-scale developments with potential knock-on effects for the riparian communities. Previous studies have focused on known fisheries areas and the mainstem Zambezi River, neglecting large tributaries such as the Kabompo River. Consequently, little literature is available on the diversity and ecology of the fishes that inhabit these large tributaries, hindering the effective management and protection of biodiversity. This study aimed to fill the current knowledge gaps in the diversity and habitat associations of fish communities in the Upper Zambezi, using the Kabompo River as a case study. The first objective was to provide an updated checklist of the fishes of the Kabompo River basin using a compilation of historical data and field surveys. This study detailed the occurrence and distribution of 83 fish species within the Kabompo River basin. All these species have been recorded in the Upper Zambezi, with some of their ranges extending into the Middle (29 species) and Lower Zambezi (23 species) while others have more restricted distributions. The most diverse families were the Cyprinidae (26 species) and the Cichlidae (15 species). A number of potential undescribed species, whose taxonomic distinctiveness need further investigation were also collected. Taxonomic conflicts are also highlighted for some of the taxa that were previously considered to have broad geographic ranges or disjunct distributions. Consistent with findings from other studies within the region, the current taxonomy underestimates the diversity of fishes in the Kabompo River and Upper Zambezi. The second objective was to assess the habitat use of small-bodied fish communities during the low-flow period in 2019. Reconnaissance trips identified dominant mesohabitats along the middle Kabompo River around Jivundu. A total of 139 mesohabitats were sampled across the five dominant mesohabitats identified; Phragmites mauritianus, wood, rock, Vallisneria aethiopica and bare substrate. Catch per unit effort, species richness, Shannon diversity and Pielou’s evenness differed significantly between these mesohabitats. Twenty-six species showed significant associations (p < 0.05) with a specific mesohabitat type or environmental variable (current velocity or depth). Eight species were associated with the woody habitat, with three of these, E. radiatus, E. unitaeniatus, and P. ngamensis being almost exclusively associated with this habitat. Enteromius kerstenii, E. lineomaculatus and S. depressirostris were almost exclusively associated with P. mauritianus and represent potential indicator species for this habitat. A number of species were also with both P. mauritianus and woody habitats. Nine species showed statistically significant associations with the rocky mesohabitat, with Amphilius uranoscopus and Petrocephalus longicapitis, being almost exclusive to rocky sections of the river. Therefore, species such as A. uranoscopus are potential indicators for monitoring the integrity of rocky habitats under threat from sedimentation. The strong associations indicate that this comprehensive baseline may be valuable indicators/ proxies for identifying anthropogenic induced change in the Kabompo basin. This would provide a basis to determine fish responses to regional environmental changes associated with human activities. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Science, 2022
- Full Text:
- Authors: Rennie, Craig Lawrence
- Date: 2022-04-06
- Subjects: Biodiversity Zambia Kabompo District , Ecology Zambia Kabompo District , Fish communities Zambia Kabompo District , Fishes Ecology Zambia Kabompo District , Freshwater habitats Zambia Kabompo District , Fishes Effect of human beings on Zambia Kabompo District , Fishes Climatic factors Zambia Kabompo District , Mesohabitat
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232261 , vital:49976
- Description: The Zambezian headwaters contain diverse fish communities which support thriving fisheries. This region and its fishes are under pressure from multiple anthropogenic threats, including overexploitation and large-scale developments with potential knock-on effects for the riparian communities. Previous studies have focused on known fisheries areas and the mainstem Zambezi River, neglecting large tributaries such as the Kabompo River. Consequently, little literature is available on the diversity and ecology of the fishes that inhabit these large tributaries, hindering the effective management and protection of biodiversity. This study aimed to fill the current knowledge gaps in the diversity and habitat associations of fish communities in the Upper Zambezi, using the Kabompo River as a case study. The first objective was to provide an updated checklist of the fishes of the Kabompo River basin using a compilation of historical data and field surveys. This study detailed the occurrence and distribution of 83 fish species within the Kabompo River basin. All these species have been recorded in the Upper Zambezi, with some of their ranges extending into the Middle (29 species) and Lower Zambezi (23 species) while others have more restricted distributions. The most diverse families were the Cyprinidae (26 species) and the Cichlidae (15 species). A number of potential undescribed species, whose taxonomic distinctiveness need further investigation were also collected. Taxonomic conflicts are also highlighted for some of the taxa that were previously considered to have broad geographic ranges or disjunct distributions. Consistent with findings from other studies within the region, the current taxonomy underestimates the diversity of fishes in the Kabompo River and Upper Zambezi. The second objective was to assess the habitat use of small-bodied fish communities during the low-flow period in 2019. Reconnaissance trips identified dominant mesohabitats along the middle Kabompo River around Jivundu. A total of 139 mesohabitats were sampled across the five dominant mesohabitats identified; Phragmites mauritianus, wood, rock, Vallisneria aethiopica and bare substrate. Catch per unit effort, species richness, Shannon diversity and Pielou’s evenness differed significantly between these mesohabitats. Twenty-six species showed significant associations (p < 0.05) with a specific mesohabitat type or environmental variable (current velocity or depth). Eight species were associated with the woody habitat, with three of these, E. radiatus, E. unitaeniatus, and P. ngamensis being almost exclusively associated with this habitat. Enteromius kerstenii, E. lineomaculatus and S. depressirostris were almost exclusively associated with P. mauritianus and represent potential indicator species for this habitat. A number of species were also with both P. mauritianus and woody habitats. Nine species showed statistically significant associations with the rocky mesohabitat, with Amphilius uranoscopus and Petrocephalus longicapitis, being almost exclusive to rocky sections of the river. Therefore, species such as A. uranoscopus are potential indicators for monitoring the integrity of rocky habitats under threat from sedimentation. The strong associations indicate that this comprehensive baseline may be valuable indicators/ proxies for identifying anthropogenic induced change in the Kabompo basin. This would provide a basis to determine fish responses to regional environmental changes associated with human activities. , Thesis (MSc) -- Faculty of Science, Ichthyology & Fisheries Science, 2022
- Full Text:
The impact of the hybridisation of dactylopius opuntiae cockerell cochineal lineages on the biological control of cactus weeds
- Authors: Mofokeng, Kedibone
- Date: 2022-04-06
- Subjects: Dactylopius South Africa Eastern Cape , Cochineal insect South Africa Eastern Cape , Opuntia South Africa Eastern Cape , Dactylopius Hybridization South Africa Eastern Cape , Insect-plant relationships , Weeds Biological control South Africa Eastern Cape , Host affinity
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232466 , vital:49994
- Description: In an attempt to control the harmful invasive alien plant, Opuntia megapotamica Arechav. (Cactaceae), a population of the cochineal insect Dactylopius opuntiae Cockerell (Dactylopiidae) (known as the ‘engelmannii’ lineage) is being considered as a potential biological control agent. This lineage of cochineal and the already established ‘ficus’ and ‘stricta’ lineages of the same cochineal species will inevitably hybridise where they occur in sympatry, possibly influencing the efficacy of the lineages on their respective hosts. Laboratory studies were conducted to investigate the likely outcomes of hybridisation between the ‘engelmannii’ and ‘ficus’ lineages. Detailed hybridisation trials, during which individual insects were manipulated and crossed, were used to compare the host affinity of F₁ and F₂ hybrids between the ‘ficus’ and ‘engelmannii’ lineages with the host specificity of the two pure-bred lineages. Host affinity was determined by plotting the net rate of increase (R) of a cochineal population developing on one host plant species against R on the other host plant species. F₁ hybrids were less species-specific than the purebred lineages in both crosses. Thus, the first generation will most likely remain effective in controlling both plant species in the field. F₂ hybrids produced a mixture of purebred and hybrid genotypes, with a higher net rate of increase when compared to purebred nymphs on their alternative host. Biological control of both Opuntia ficus-indica (L.) Mill. (Cactaceae) and O. megapotamica in the Eastern Cape Province, where both invasive alien plant species occur together, could be enhanced by the less specific nature of the F₁ progeny, which developed equally well on both O. megapotamica and O. ficus-indica; but this benefit will be reduced by the loss of host specificity of F₂ progeny. The success of biological control would depend on whether the species-specific nymph encounters its target host, because the less specific nymphs will have little effect on controlling either weed. These findings indicate that only purebred D. opuntiae lineages should be released in monocultures of their targeted weed. Long-term consequences of hybridisation should be monitored in the field. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
- Authors: Mofokeng, Kedibone
- Date: 2022-04-06
- Subjects: Dactylopius South Africa Eastern Cape , Cochineal insect South Africa Eastern Cape , Opuntia South Africa Eastern Cape , Dactylopius Hybridization South Africa Eastern Cape , Insect-plant relationships , Weeds Biological control South Africa Eastern Cape , Host affinity
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232466 , vital:49994
- Description: In an attempt to control the harmful invasive alien plant, Opuntia megapotamica Arechav. (Cactaceae), a population of the cochineal insect Dactylopius opuntiae Cockerell (Dactylopiidae) (known as the ‘engelmannii’ lineage) is being considered as a potential biological control agent. This lineage of cochineal and the already established ‘ficus’ and ‘stricta’ lineages of the same cochineal species will inevitably hybridise where they occur in sympatry, possibly influencing the efficacy of the lineages on their respective hosts. Laboratory studies were conducted to investigate the likely outcomes of hybridisation between the ‘engelmannii’ and ‘ficus’ lineages. Detailed hybridisation trials, during which individual insects were manipulated and crossed, were used to compare the host affinity of F₁ and F₂ hybrids between the ‘ficus’ and ‘engelmannii’ lineages with the host specificity of the two pure-bred lineages. Host affinity was determined by plotting the net rate of increase (R) of a cochineal population developing on one host plant species against R on the other host plant species. F₁ hybrids were less species-specific than the purebred lineages in both crosses. Thus, the first generation will most likely remain effective in controlling both plant species in the field. F₂ hybrids produced a mixture of purebred and hybrid genotypes, with a higher net rate of increase when compared to purebred nymphs on their alternative host. Biological control of both Opuntia ficus-indica (L.) Mill. (Cactaceae) and O. megapotamica in the Eastern Cape Province, where both invasive alien plant species occur together, could be enhanced by the less specific nature of the F₁ progeny, which developed equally well on both O. megapotamica and O. ficus-indica; but this benefit will be reduced by the loss of host specificity of F₂ progeny. The success of biological control would depend on whether the species-specific nymph encounters its target host, because the less specific nymphs will have little effect on controlling either weed. These findings indicate that only purebred D. opuntiae lineages should be released in monocultures of their targeted weed. Long-term consequences of hybridisation should be monitored in the field. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
The influence of financial socialisation agents on financial knowledge, financial self-efficacy and financial behaviour among South African consumers
- Authors: Maswena, Kaelo
- Date: 2022-04-06
- Subjects: Financial literacy South Africa , Finance, Personal South Africa , Budgets, Personal South Africa , Consumer behavior South Africa , Consumers Attitudes , Life skills South Africa , Social learning South Africa , Self-control South Africa , Socialization South Africa , Financial socialisation agents
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232421 , vital:49990
- Description: There is a need to promote positive financial behaviour in South Africa. According to the Human Sciences Research Council (2018), South African financial behaviour culture emphasises a financially vulnerable nation in terms of not having enough income for future planning and lacking financial self-control. In its key role in influencing financial behaviour, financial socialisation, which is characterised by interactions with indirect, or purposive financial education and communication of financial norms influencing financial behaviours, attitudes, knowledge, capabilities, and self-efficacy of consumers, is the topic of this study. The purpose of the study was to investigate the influence of financial socialisation agents on financial (actual and self-assessed) knowledge, financial self-efficacy and financial behaviour among South African consumers. Based on Glenn’s (2018) framework, Xiao et al. (2009) socialisation and Moschis et al. (1978) consumer socialisation theory, the financial socialisation theoretical framework is provided for this study. Literature review provided an overview of past studies on the concepts of financial socialisation, financial (actual and self-assessed) knowledge, financial self-efficacy and financial behaviour. Therefore, a positivistic research paradigm was adopted, which used a cross-sectional correlational research methodology. This study analysed data primarily collected by a questionnaire survey of South African social attitudes to financial literacy by the Human Sciences Research Council (2011), using a multi-staged sampling technique in all South African provinces of consumers of 16 years and older. Descriptive statistics showed that most respondents were black African females between the ages of 26 and 35 years. Most held Matric certificates and were in paid employment for 30 hours or more per week. Most respondents considered family to be the most influential financial socialisation agent, followed by friends, then the bank. Actual financial knowledge of respondents, was indicated as relatively high. Results on self-assessed financial knowledge showed that most of the respondents considered their level of financial knowledge to be neutral. Using Pearson product-moment correlations to measure the strength and correlations of relationships, positive significant correlations were found between financial socialisation agents, financial (actual and self-assessed) knowledge and financial self-efficacy, while a negative and insignificant correlation was found between financial socialisation agents and financial behaviour. Multiple regression analysis results testing the hypotheses of the study demonstrated that financial socialisation agents have a significant positive influence on financial (actual and self-assessed) knowledge and financial self-efficacy; a significant influence on financial behaviour was not reported. Self-assessed financial knowledge showed a positive significant influence on financial self-efficacy and actual financial knowledge had an insignificant negative influence on financial self-efficacy. Actual financial knowledge had a significant positive influence on financial behaviour, whereby a positive yet insignificant relationship was found between self-assessed knowledge and financial behaviour. In the end, recommendations for the results indicate that financial educators need to develop a financial education plan that will include other content areas of financial knowledge such as identified by Huston (2010) and Lusardi and Mitchell (2011); the most important recommendation would be to help consumers have an accurate understanding of their own level of financial knowledge and to improve financial self-efficacy in consumers, financial socialisation experiences such as offering encouragement to open a bank account, to save and invest money, and presenting opportunities to practise financial skills, may increase consumers’ self-efficacy and lead to positive financial behaviours. , Thesis (MCom) -- Faculty of Commerce, Management, 2022
- Full Text:
- Authors: Maswena, Kaelo
- Date: 2022-04-06
- Subjects: Financial literacy South Africa , Finance, Personal South Africa , Budgets, Personal South Africa , Consumer behavior South Africa , Consumers Attitudes , Life skills South Africa , Social learning South Africa , Self-control South Africa , Socialization South Africa , Financial socialisation agents
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232421 , vital:49990
- Description: There is a need to promote positive financial behaviour in South Africa. According to the Human Sciences Research Council (2018), South African financial behaviour culture emphasises a financially vulnerable nation in terms of not having enough income for future planning and lacking financial self-control. In its key role in influencing financial behaviour, financial socialisation, which is characterised by interactions with indirect, or purposive financial education and communication of financial norms influencing financial behaviours, attitudes, knowledge, capabilities, and self-efficacy of consumers, is the topic of this study. The purpose of the study was to investigate the influence of financial socialisation agents on financial (actual and self-assessed) knowledge, financial self-efficacy and financial behaviour among South African consumers. Based on Glenn’s (2018) framework, Xiao et al. (2009) socialisation and Moschis et al. (1978) consumer socialisation theory, the financial socialisation theoretical framework is provided for this study. Literature review provided an overview of past studies on the concepts of financial socialisation, financial (actual and self-assessed) knowledge, financial self-efficacy and financial behaviour. Therefore, a positivistic research paradigm was adopted, which used a cross-sectional correlational research methodology. This study analysed data primarily collected by a questionnaire survey of South African social attitudes to financial literacy by the Human Sciences Research Council (2011), using a multi-staged sampling technique in all South African provinces of consumers of 16 years and older. Descriptive statistics showed that most respondents were black African females between the ages of 26 and 35 years. Most held Matric certificates and were in paid employment for 30 hours or more per week. Most respondents considered family to be the most influential financial socialisation agent, followed by friends, then the bank. Actual financial knowledge of respondents, was indicated as relatively high. Results on self-assessed financial knowledge showed that most of the respondents considered their level of financial knowledge to be neutral. Using Pearson product-moment correlations to measure the strength and correlations of relationships, positive significant correlations were found between financial socialisation agents, financial (actual and self-assessed) knowledge and financial self-efficacy, while a negative and insignificant correlation was found between financial socialisation agents and financial behaviour. Multiple regression analysis results testing the hypotheses of the study demonstrated that financial socialisation agents have a significant positive influence on financial (actual and self-assessed) knowledge and financial self-efficacy; a significant influence on financial behaviour was not reported. Self-assessed financial knowledge showed a positive significant influence on financial self-efficacy and actual financial knowledge had an insignificant negative influence on financial self-efficacy. Actual financial knowledge had a significant positive influence on financial behaviour, whereby a positive yet insignificant relationship was found between self-assessed knowledge and financial behaviour. In the end, recommendations for the results indicate that financial educators need to develop a financial education plan that will include other content areas of financial knowledge such as identified by Huston (2010) and Lusardi and Mitchell (2011); the most important recommendation would be to help consumers have an accurate understanding of their own level of financial knowledge and to improve financial self-efficacy in consumers, financial socialisation experiences such as offering encouragement to open a bank account, to save and invest money, and presenting opportunities to practise financial skills, may increase consumers’ self-efficacy and lead to positive financial behaviours. , Thesis (MCom) -- Faculty of Commerce, Management, 2022
- Full Text:
The invasion autecology of Iris pseudacorus L. (Iridaceae) in South Africa
- Authors: Sandenbergh, Emma
- Date: 2022-04-06
- Subjects: Iris pseudacorus South Africa , Invasive plants South Africa , Aquatic weeds South Africa , Plant genetics South Africa , Freshwater ecology South Africa , Iris pseudacorus Geographical distribution , Phytogeography
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232272 , vital:49977
- Description: Iris pseudacorus L. (Iridaceae) is an emergent aquatic macrophyte originating from Europe, north Africa, and western Asia, and is becoming an increasingly problematic invader in South Africa. By forming dense rhizomatic mats in the absence of natural enemies, I. pseudacorus outcompetes co-occurring indigenous biota, causing serious environmental and socioeconomic challenges. Iris pseudacorus is a declared invader in South Africa, Argentina, New Zealand, the United States of America, and Canada, but little information is known regarding the species’ invasive potential, particularly in the southern hemisphere, hindering the effectiveness of control efforts. This study addresses this knowledge gap in a South African context, providing valuable insight into the invasion autecology of I. pseudacorus in South Africa. For effective management and control of I. pseudacorus in South Africa and the global south, its distribution and invasive potential must be determined, and its population genetics understood. Hence, this study aimed to map the current confirmed distribution of I. pseudacorus populations in South Africa, investigating the relative abundance of I. pseudacorus individuals in each population, and comparing their sexual reproductive outputs. Moreover, this study assessed the competitive interactions between I. pseudacorus and co-occurring native species T. capensis, and examined the genetic diversity present between and within South African I. pseudacorus populations. Through field surveys, I. pseudacorus infestations were confirmed in eight of the country’s nine provinces, with the highest number of infestations recorded in the urban hubs, and greatest population abundances reported in the warmer, wetter regions of South Africa. These surveys indicated that South African I. pseudacorus populations have enhanced their sexual reproductive output relative to native range populations, and a germination rate of ~ 83 % was determined in the laboratory. The results of a common garden competition experiment indicated that T. capensis may be a superior competitor over I. pseudacorus, but this was not supported by field observations, and may be a result of the short duration of the experiment. Using inter-simple sequence repeats (ISSRs), high genetic diversity was observed within and between populations of I. pseudacorus, indicating the employment of sexual reproductive strategies, and providing evidence for gene-flow between and within populations. Moreover, a weak negative correlation was observed between geographic distance and genetic similarity, ii indicating a largely anthropogenic spread of I. pseudacorus, and suggesting the occurrence of fewer founding events than reported in the United States. This study provides useful insight into the invasion autecology of I. pseudacorus in South Africa, contributing to the ongoing research surrounding I. pseudacorus invasions worldwide, particularly in the southern hemisphere. These results contribute to the development of appropriate adaptive and integrated management strategies to control I. pseudacorus invasions in South Africa, and should be implemented before South African I. pseudacorus infestations reach the severity observed elsewhere. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
- Authors: Sandenbergh, Emma
- Date: 2022-04-06
- Subjects: Iris pseudacorus South Africa , Invasive plants South Africa , Aquatic weeds South Africa , Plant genetics South Africa , Freshwater ecology South Africa , Iris pseudacorus Geographical distribution , Phytogeography
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232272 , vital:49977
- Description: Iris pseudacorus L. (Iridaceae) is an emergent aquatic macrophyte originating from Europe, north Africa, and western Asia, and is becoming an increasingly problematic invader in South Africa. By forming dense rhizomatic mats in the absence of natural enemies, I. pseudacorus outcompetes co-occurring indigenous biota, causing serious environmental and socioeconomic challenges. Iris pseudacorus is a declared invader in South Africa, Argentina, New Zealand, the United States of America, and Canada, but little information is known regarding the species’ invasive potential, particularly in the southern hemisphere, hindering the effectiveness of control efforts. This study addresses this knowledge gap in a South African context, providing valuable insight into the invasion autecology of I. pseudacorus in South Africa. For effective management and control of I. pseudacorus in South Africa and the global south, its distribution and invasive potential must be determined, and its population genetics understood. Hence, this study aimed to map the current confirmed distribution of I. pseudacorus populations in South Africa, investigating the relative abundance of I. pseudacorus individuals in each population, and comparing their sexual reproductive outputs. Moreover, this study assessed the competitive interactions between I. pseudacorus and co-occurring native species T. capensis, and examined the genetic diversity present between and within South African I. pseudacorus populations. Through field surveys, I. pseudacorus infestations were confirmed in eight of the country’s nine provinces, with the highest number of infestations recorded in the urban hubs, and greatest population abundances reported in the warmer, wetter regions of South Africa. These surveys indicated that South African I. pseudacorus populations have enhanced their sexual reproductive output relative to native range populations, and a germination rate of ~ 83 % was determined in the laboratory. The results of a common garden competition experiment indicated that T. capensis may be a superior competitor over I. pseudacorus, but this was not supported by field observations, and may be a result of the short duration of the experiment. Using inter-simple sequence repeats (ISSRs), high genetic diversity was observed within and between populations of I. pseudacorus, indicating the employment of sexual reproductive strategies, and providing evidence for gene-flow between and within populations. Moreover, a weak negative correlation was observed between geographic distance and genetic similarity, ii indicating a largely anthropogenic spread of I. pseudacorus, and suggesting the occurrence of fewer founding events than reported in the United States. This study provides useful insight into the invasion autecology of I. pseudacorus in South Africa, contributing to the ongoing research surrounding I. pseudacorus invasions worldwide, particularly in the southern hemisphere. These results contribute to the development of appropriate adaptive and integrated management strategies to control I. pseudacorus invasions in South Africa, and should be implemented before South African I. pseudacorus infestations reach the severity observed elsewhere. , Thesis (MSc) -- Faculty of Science, Botany, 2022
- Full Text:
The use of the cochineal insect, Dactylopius tomentosus Lamarck, as a biological control agent for the invasive alien thistle cholla, Cylindropuntia pallida (Rose) F.M. Knuth in South Africa
- Authors: Zozo, Ekhona
- Date: 2022-04-06
- Subjects: Cochineal insect , Thistles Biological control South Africa , Alien plants South Africa , Invasive plants South Africa , Cactus South Africa , Biological assay
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/233823 , vital:50131
- Description: Cylindropuntia pallida (Rose) F.M. Knuth (Cactaceae) is an invasive alien plant in South Africa indigenous in the southern U.S.A. and Mexico. Large infestations of this species can be found in the Kalahari and arid Karoo regions of South Africa, which is also present in Namibia. Because it is a very spiny cactus, dense infestations have a negative impact on agriculture and natural ecosystems. This cactus has become naturalised to the extent that eradication is impossible and the negative impacts are steadily increasing due to its increasing distribution and density. The cochineal insect, Dactylopius tomentosus Lamarck (Dactylopiidae), is native in Mexico and parts of North America, such as Texas, Arizona, and New Mexico in the U.S.A. This cochineal species is highly specialized and associated only with Cylindropuntia species, a group of cacti that are primarily restricted to the same areas. It has been introduced into Australia and South Africa as a biological control agent to control various invasive alien Cylindropuntia species. This cochineal species has several biotypes specific to certain Cylindropuntia species hosts. A biotype is a clade that cannot be differentiated morphologically from others but has different host ranges and impacts depending on the host plant species. Included amongst biotypes that have been released in South Africa are D. tomentosus ‘imbricata’ and D. tomentosus ‘cholla’ for the biological control of Cylindropuntia imbricata (Haw.) F.M. Knuth (Cactaceae) and Cylindropuntia fulgida (Engelmann) F.M. Knuth var. mamillata (Schott ex Engelmann) Backeb. (Cactaceae), respectively. These biotypes have resulted in both host plants being under substantial control in South Africa. The first part of this thesis evaluated which of the two D. tomentosus biotypes already in use in South Africa could be an effective biological control agent for C. pallida. This was done by assessing the fitness of the cochineals on the three cactus species and assessing the impact that each of the cochineals has on each of the target weed species. Should these biotypes prove ineffective, there is a third biotype, namely D. tomentosus ‘californica var. parkerii’, which researchers in Australia have worked on and have found to be suitably host-specific for release in Australia and suitably damaging to C. pallida in that country. Therefore, this new biotype could be released in South Africa if it is required. Sexually compatible biological control agents, especially those closely related and occurring in close spatial proximity to one another, may interbreed and the impacts of this hybridisation are difficult to predict. It is important to understand the outcomes of the hybridisation of cochineal because it can affect the impact of the biological control agents and thus the control of the target weed. The second part of this thesis investigated the impacts of the hybridisation of the two cochineal biotypes by assessing the damage the agents would have on the target weed, and on C. imbricata and C. fulgida var. mamillata, in the presence of one or both cochineal biotypes. The ‘cholla’ biotype performed better on C. pallida than the ‘imbricata’ biotype, but neither biotype could control C. pallida to an extent similar to the control they provide for their respective target weeds, C. imbricata and C. fulgida var. mamillata. Both the ‘cholla’ biotype and hybrids of the two biotypes of cochineal were effective at killing C. pallida when both C. imbricata and C. fulgida var. mamillata were also present. This suggests that the ‘cholla’ or hybrids may be effective at controlling C. pallida when either C. imbricata or C. fulgida var. mamillata are also present in the field due to the high population density of cochineal that results under these circumstances. There are, however, many C. pallida infestations in South Africa where the plant is problematic and is isolated from other Cylindropuntia species, and these populations are unlikely to be controlled by the ‘cholla’ biotype or the hybrids. Neither of the cochineal biotypes that are used for biological control in South Africa are suitably damaging to C. pallida to warrant their use as biological control agents for this species. Dactylopius tomentosus ‘californica var. parkerii’ is therefore recommended for release based on its host-specificity and impact to C. pallida in Australia. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2022
- Full Text:
- Authors: Zozo, Ekhona
- Date: 2022-04-06
- Subjects: Cochineal insect , Thistles Biological control South Africa , Alien plants South Africa , Invasive plants South Africa , Cactus South Africa , Biological assay
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/233823 , vital:50131
- Description: Cylindropuntia pallida (Rose) F.M. Knuth (Cactaceae) is an invasive alien plant in South Africa indigenous in the southern U.S.A. and Mexico. Large infestations of this species can be found in the Kalahari and arid Karoo regions of South Africa, which is also present in Namibia. Because it is a very spiny cactus, dense infestations have a negative impact on agriculture and natural ecosystems. This cactus has become naturalised to the extent that eradication is impossible and the negative impacts are steadily increasing due to its increasing distribution and density. The cochineal insect, Dactylopius tomentosus Lamarck (Dactylopiidae), is native in Mexico and parts of North America, such as Texas, Arizona, and New Mexico in the U.S.A. This cochineal species is highly specialized and associated only with Cylindropuntia species, a group of cacti that are primarily restricted to the same areas. It has been introduced into Australia and South Africa as a biological control agent to control various invasive alien Cylindropuntia species. This cochineal species has several biotypes specific to certain Cylindropuntia species hosts. A biotype is a clade that cannot be differentiated morphologically from others but has different host ranges and impacts depending on the host plant species. Included amongst biotypes that have been released in South Africa are D. tomentosus ‘imbricata’ and D. tomentosus ‘cholla’ for the biological control of Cylindropuntia imbricata (Haw.) F.M. Knuth (Cactaceae) and Cylindropuntia fulgida (Engelmann) F.M. Knuth var. mamillata (Schott ex Engelmann) Backeb. (Cactaceae), respectively. These biotypes have resulted in both host plants being under substantial control in South Africa. The first part of this thesis evaluated which of the two D. tomentosus biotypes already in use in South Africa could be an effective biological control agent for C. pallida. This was done by assessing the fitness of the cochineals on the three cactus species and assessing the impact that each of the cochineals has on each of the target weed species. Should these biotypes prove ineffective, there is a third biotype, namely D. tomentosus ‘californica var. parkerii’, which researchers in Australia have worked on and have found to be suitably host-specific for release in Australia and suitably damaging to C. pallida in that country. Therefore, this new biotype could be released in South Africa if it is required. Sexually compatible biological control agents, especially those closely related and occurring in close spatial proximity to one another, may interbreed and the impacts of this hybridisation are difficult to predict. It is important to understand the outcomes of the hybridisation of cochineal because it can affect the impact of the biological control agents and thus the control of the target weed. The second part of this thesis investigated the impacts of the hybridisation of the two cochineal biotypes by assessing the damage the agents would have on the target weed, and on C. imbricata and C. fulgida var. mamillata, in the presence of one or both cochineal biotypes. The ‘cholla’ biotype performed better on C. pallida than the ‘imbricata’ biotype, but neither biotype could control C. pallida to an extent similar to the control they provide for their respective target weeds, C. imbricata and C. fulgida var. mamillata. Both the ‘cholla’ biotype and hybrids of the two biotypes of cochineal were effective at killing C. pallida when both C. imbricata and C. fulgida var. mamillata were also present. This suggests that the ‘cholla’ or hybrids may be effective at controlling C. pallida when either C. imbricata or C. fulgida var. mamillata are also present in the field due to the high population density of cochineal that results under these circumstances. There are, however, many C. pallida infestations in South Africa where the plant is problematic and is isolated from other Cylindropuntia species, and these populations are unlikely to be controlled by the ‘cholla’ biotype or the hybrids. Neither of the cochineal biotypes that are used for biological control in South Africa are suitably damaging to C. pallida to warrant their use as biological control agents for this species. Dactylopius tomentosus ‘californica var. parkerii’ is therefore recommended for release based on its host-specificity and impact to C. pallida in Australia. , Thesis (PhD) -- Faculty of Science, Zoology and Entomology, 2022
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Wild Honeybush (Cyclopia intermedia) augmentation
- Authors: Michau, Paul-Luc
- Date: 2022-04-06
- Subjects: Herbal teas South Africa Joubertina , Tea trade South Africa Joubertina , Legumes Harvesting South Africa Joubertina , Legumes Planting South Africa Joubertina , Sustainable development South Africa Joubertina , Economic development Environmental aspects South Africa Joubertina , Natural resources Management South Africa Joubertina , Wild Honeybush (Cyclopia intermedia)
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232635 , vital:50009
- Description: Honeybush (Cyclopia spp.) is an endemic legume to the fynbos region of South Africa, and certain species of the genus are used to make health tonics. There are growing international markets for such products and, currently, wild populations of the species Cyclopia intermedia are disproportionately relied upon to support this increase. Due to the sensitivity and ecological complexity of the resource, serious concerns about sustainability and regulation have arisen. The social landscape of the resource is equally as complex, and solutions for alleviating pressure on wild populations, such as reducing or banning harvesting, and switching to commercial cultivation are untenable in every case. A possible option, which has been used in the wildflower industry, is to augment (increase) wild populations by planting seeds or seedlings directly into the veld. The main focus of this research was to explore the viability of using augmentation to boost wild populations of C. intermedia through field trials. In support of this broad aim, research objectives addressed understanding the ecological habitat conditions of the species, quantifying the economic potential of augmentation, characterizing wild populations and conducting seed germination tests. GIS methods were used to locate sites most representative of natural conditions on different post-fire aged veld on a farm in the Kouga mountains. The study characterized habitat conditions by collecting soil and vegetation samples at plots where honeybush was present and absent within close proximity. Vegetation diversity was only slightly higher in presence plots, and no clear pattern between absence and presence plots was observed for soil properties. However, post-fire site age did significantly influence certain nutrient levels. The augmentation trial results indicate that seedlings have a much higher survival rate than seeds on average. Survival success varied unpredictably between plots where wild honeybush was already present and adjacent plots where it was absent. Post-fire site age influenced seedling growth and seed survival positively with the newly burnt plots showing the best growth rates overall. The cost-benefit analysis reveals that seeds are a better option as they require low-cost inputs and carry less risk, unlike seedlings which may have higher survival but are more expensive. The study recommends using trials to assess survival before choosing an option. Out of five natural populations of honeybush that were assessed only one showed seedling recruitment and three young plants were found between two of the other sites. Growth characteristics of populations showed expected variability based on site conditions and disturbance history. Growth appears to be rapid in the first-year post disturbance, thereafter slowing down. Average stem numbers and basal circumference increased concurrently for both harvested and unharvested populations. Due to the influence of natural conditions such as slope aspect and soil properties on plant morphology, it is best to compare harvested and unharvested individuals from the same site and preferably within close proximity to minimize such differences. Using seed sourced from the same parent population is critical to preserving genetic integrity and little is understood about germination characteristics from wild C. intermedia populations. The study tested germination rates between green and brown seed and alternative collection methods. When comparisons were done within farms on two occasions collection and seed colour did have a significant influence. Overall, the influence of which farm the seeds were collected from appeared to play the biggest role in determining germination. , Thesis (MSc) -- Faculty of Science, Geography, 2022
- Full Text:
- Authors: Michau, Paul-Luc
- Date: 2022-04-06
- Subjects: Herbal teas South Africa Joubertina , Tea trade South Africa Joubertina , Legumes Harvesting South Africa Joubertina , Legumes Planting South Africa Joubertina , Sustainable development South Africa Joubertina , Economic development Environmental aspects South Africa Joubertina , Natural resources Management South Africa Joubertina , Wild Honeybush (Cyclopia intermedia)
- Language: English
- Type: Master's thesis , text
- Identifier: http://hdl.handle.net/10962/232635 , vital:50009
- Description: Honeybush (Cyclopia spp.) is an endemic legume to the fynbos region of South Africa, and certain species of the genus are used to make health tonics. There are growing international markets for such products and, currently, wild populations of the species Cyclopia intermedia are disproportionately relied upon to support this increase. Due to the sensitivity and ecological complexity of the resource, serious concerns about sustainability and regulation have arisen. The social landscape of the resource is equally as complex, and solutions for alleviating pressure on wild populations, such as reducing or banning harvesting, and switching to commercial cultivation are untenable in every case. A possible option, which has been used in the wildflower industry, is to augment (increase) wild populations by planting seeds or seedlings directly into the veld. The main focus of this research was to explore the viability of using augmentation to boost wild populations of C. intermedia through field trials. In support of this broad aim, research objectives addressed understanding the ecological habitat conditions of the species, quantifying the economic potential of augmentation, characterizing wild populations and conducting seed germination tests. GIS methods were used to locate sites most representative of natural conditions on different post-fire aged veld on a farm in the Kouga mountains. The study characterized habitat conditions by collecting soil and vegetation samples at plots where honeybush was present and absent within close proximity. Vegetation diversity was only slightly higher in presence plots, and no clear pattern between absence and presence plots was observed for soil properties. However, post-fire site age did significantly influence certain nutrient levels. The augmentation trial results indicate that seedlings have a much higher survival rate than seeds on average. Survival success varied unpredictably between plots where wild honeybush was already present and adjacent plots where it was absent. Post-fire site age influenced seedling growth and seed survival positively with the newly burnt plots showing the best growth rates overall. The cost-benefit analysis reveals that seeds are a better option as they require low-cost inputs and carry less risk, unlike seedlings which may have higher survival but are more expensive. The study recommends using trials to assess survival before choosing an option. Out of five natural populations of honeybush that were assessed only one showed seedling recruitment and three young plants were found between two of the other sites. Growth characteristics of populations showed expected variability based on site conditions and disturbance history. Growth appears to be rapid in the first-year post disturbance, thereafter slowing down. Average stem numbers and basal circumference increased concurrently for both harvested and unharvested populations. Due to the influence of natural conditions such as slope aspect and soil properties on plant morphology, it is best to compare harvested and unharvested individuals from the same site and preferably within close proximity to minimize such differences. Using seed sourced from the same parent population is critical to preserving genetic integrity and little is understood about germination characteristics from wild C. intermedia populations. The study tested germination rates between green and brown seed and alternative collection methods. When comparisons were done within farms on two occasions collection and seed colour did have a significant influence. Overall, the influence of which farm the seeds were collected from appeared to play the biggest role in determining germination. , Thesis (MSc) -- Faculty of Science, Geography, 2022
- Full Text:
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