Polymer based electrospun nanofibers as diagnostic probes for the detection of toxic metal ions in water
- Authors: Ondigo, Dezzline Adhiambo
- Date: 2013
- Subjects: Heavy metals , Nanofibers , Nanoparticles , Colorimetric analysis
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4557 , http://hdl.handle.net/10962/d1018261
- Description: The thesis presents the development of polymer based electrospun nanofibers as diagnostic probes for the selective detection of toxic metal ions in water. Through modification of the chemical characteristics of nanofibers by pre- and post-electrospinning treatments, three different diagnostic probes were successfully developed. These were the fluorescent pyridylazo-2-naphthol-poly(acrylic acid) nanofiber probe, the colorimetric probe based on glutathione-stabilized silver/copper alloy nanoparticles and the colorimetric probe based on 2-(2’-Pyridyl)-imidazole functionalized nanofibers. The probes were characterized by Fourier transform infrared spectroscopy (FTIR), Energy dispersive x-ray spectroscopy (EDX), Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM). The fluorescent nanofiber probe was developed towards the determination of Ni²⁺. Covalently functionalized pyridylazo-2-naphthol-poly(acrylic acid) polymeric nanofibers were employed. The solid state Ni²⁺ probe exhibited a good correlation between the fluorescence intensity and nickel concentration up to 1.0 mg/mL based on the Stern-Volmer mechanism. The detection limit of the nanofiber probe was found to be 0.07 ng/mL. The versatility of the fluorescent probe was demonstrated by affording a simple, rapid and selective detection of Ni²⁺ in the presence of other competing metal ions by direct analysis without employing any sample handling steps. For the second part of the study, a simple strategy based on the in-situ synthesis of the glutathione stabilized silver/copper alloy nanoparticles (Ag/Cu alloy NPs) in nylon 6 provided a fast procedure for fabricating a colorimetric probe for the detection of Ni²⁺ in water samples. The electrospun nanofiber composites responded to Ni²⁺ ions but did not suffer any interference from the other metal ions. The effect of Ni²⁺ concentration on the nanocomposite fibers was considered and the “eye-ball” limit of detection was found to be 5.8 μg/mL. Lastly, the third probe was developed by covalently linking an imidazole derivative; 2-(2′-Pyridyl)-imidazole (PIMH) to Poly(vinylbenzyl chloride) (PVBC) and nylon 6 nanofibers by post-electrospinning treatments using a wet chemical method and graft copolymerization technique, respectively. The post-electrospinning modifications of the nanofibers were achieved without altering their fibrous morphology. The color change to red-orange in the presence of Fe²⁺ for both the grafted nylon 6 (white) and the chemically modified PVBC (yellow) nanofibers was instantaneous. The developed diagnostic probes exhibited the desired selectivity towards the targeted metal ions.
- Full Text:
- Authors: Ondigo, Dezzline Adhiambo
- Date: 2013
- Subjects: Heavy metals , Nanofibers , Nanoparticles , Colorimetric analysis
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4557 , http://hdl.handle.net/10962/d1018261
- Description: The thesis presents the development of polymer based electrospun nanofibers as diagnostic probes for the selective detection of toxic metal ions in water. Through modification of the chemical characteristics of nanofibers by pre- and post-electrospinning treatments, three different diagnostic probes were successfully developed. These were the fluorescent pyridylazo-2-naphthol-poly(acrylic acid) nanofiber probe, the colorimetric probe based on glutathione-stabilized silver/copper alloy nanoparticles and the colorimetric probe based on 2-(2’-Pyridyl)-imidazole functionalized nanofibers. The probes were characterized by Fourier transform infrared spectroscopy (FTIR), Energy dispersive x-ray spectroscopy (EDX), Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM). The fluorescent nanofiber probe was developed towards the determination of Ni²⁺. Covalently functionalized pyridylazo-2-naphthol-poly(acrylic acid) polymeric nanofibers were employed. The solid state Ni²⁺ probe exhibited a good correlation between the fluorescence intensity and nickel concentration up to 1.0 mg/mL based on the Stern-Volmer mechanism. The detection limit of the nanofiber probe was found to be 0.07 ng/mL. The versatility of the fluorescent probe was demonstrated by affording a simple, rapid and selective detection of Ni²⁺ in the presence of other competing metal ions by direct analysis without employing any sample handling steps. For the second part of the study, a simple strategy based on the in-situ synthesis of the glutathione stabilized silver/copper alloy nanoparticles (Ag/Cu alloy NPs) in nylon 6 provided a fast procedure for fabricating a colorimetric probe for the detection of Ni²⁺ in water samples. The electrospun nanofiber composites responded to Ni²⁺ ions but did not suffer any interference from the other metal ions. The effect of Ni²⁺ concentration on the nanocomposite fibers was considered and the “eye-ball” limit of detection was found to be 5.8 μg/mL. Lastly, the third probe was developed by covalently linking an imidazole derivative; 2-(2′-Pyridyl)-imidazole (PIMH) to Poly(vinylbenzyl chloride) (PVBC) and nylon 6 nanofibers by post-electrospinning treatments using a wet chemical method and graft copolymerization technique, respectively. The post-electrospinning modifications of the nanofibers were achieved without altering their fibrous morphology. The color change to red-orange in the presence of Fe²⁺ for both the grafted nylon 6 (white) and the chemically modified PVBC (yellow) nanofibers was instantaneous. The developed diagnostic probes exhibited the desired selectivity towards the targeted metal ions.
- Full Text:
Positions on the mat : a micro-ethnographic study of teachers' and learners' co-construction of an early literacy practice
- Authors: Van der Mescht, Caroline
- Date: 2013 , 2013-06-10
- Subjects: Literacy -- Study and teaching (Primary) -- South Africa -- Eastern Cape English language -- Study and teaching (Primary) -- South Africa -- Eastern Cape English literature -- Study and teaching (Primary) -- South Africa -- Eastern Cape Education, Primary -- Research -- South Africa -- Eastern Cape Teachers -- Psychology Language and culture
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1836 , http://hdl.handle.net/10962/d1004333
- Description: Thesis embargoed until end of 2023. , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Authors: Van der Mescht, Caroline
- Date: 2013 , 2013-06-10
- Subjects: Literacy -- Study and teaching (Primary) -- South Africa -- Eastern Cape English language -- Study and teaching (Primary) -- South Africa -- Eastern Cape English literature -- Study and teaching (Primary) -- South Africa -- Eastern Cape Education, Primary -- Research -- South Africa -- Eastern Cape Teachers -- Psychology Language and culture
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1836 , http://hdl.handle.net/10962/d1004333
- Description: Thesis embargoed until end of 2023. , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
Postcolonial monuments and public sculpture in Zimbabwe
- Authors: Samwanda, Biggie
- Date: 2013 , 2013-10-10
- Subjects: Benhura, Dominic, 1968- -- Criticism and interpretation Madebe, Adam -- Criticism and interpretation Postcolonialism and the arts Monuments -- Zimbabwe Public sculpture -- Zimbabwe Art -- Political aspects -- Zimbabwe Collective memory in art -- Zimbabwe Old Bulawayo (Zimbabwe) National Heroes Acre (Zimbabwe)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2447 , http://hdl.handle.net/10962/d1006825
- Description: The study critically examines public art in postcolonial Zimbabwe‘s cities of Harare and Bulawayo. In a case by case approach, I analyse the National Heroes Acre and Old Bulawayo monuments, and three contemporary sculptures – Dominic Benhura‘s Leapfrog (1993) and Adam Madebe‘s Ploughman (1987) and Looking into the future (1985). I used a qualitative research methodology to collect and analyse data. My research design utilised in-depth interviews, observation, content and document analysis, and photography to gather nuanced data and these methods ensured that data collected is validated and/or triangulated. I argue that in Zimbabwe, monuments and public sculpture serve as the necessary interface of the visual, cultural and political discourse of a postcolonial nation that is constantly in transition and dialogue with the everyday realities of trying to understand and construct a national identity from a nest of sub-cultures. I further argue that monuments and public sculpture in Zimbabwe abound with political imperatives given that, as visual artefacts that interlace with ritual performance, they are conscious creations of society and are therefore constitutive of that society‘s heritage and social memory. Since independence in 1980, monuments and public sculpture have helped to open up discursive space and dialogue on national issues and myths. Such discursive spaces and dialogues, I also argue, have been particularly animated from the late 1990s to the present, a period in which the nation has engaged in self-introspection in the face of socio-political change and challenges in the continual process of imagining the Zimbabwean nation. Little research focusing on postcolonial public art in Zimbabwe has hitherto been undertaken. This study addresses gaps in this literature while also providing a spring board from which future studies may emerge. , Microsoft� Word 2010 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Authors: Samwanda, Biggie
- Date: 2013 , 2013-10-10
- Subjects: Benhura, Dominic, 1968- -- Criticism and interpretation Madebe, Adam -- Criticism and interpretation Postcolonialism and the arts Monuments -- Zimbabwe Public sculpture -- Zimbabwe Art -- Political aspects -- Zimbabwe Collective memory in art -- Zimbabwe Old Bulawayo (Zimbabwe) National Heroes Acre (Zimbabwe)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2447 , http://hdl.handle.net/10962/d1006825
- Description: The study critically examines public art in postcolonial Zimbabwe‘s cities of Harare and Bulawayo. In a case by case approach, I analyse the National Heroes Acre and Old Bulawayo monuments, and three contemporary sculptures – Dominic Benhura‘s Leapfrog (1993) and Adam Madebe‘s Ploughman (1987) and Looking into the future (1985). I used a qualitative research methodology to collect and analyse data. My research design utilised in-depth interviews, observation, content and document analysis, and photography to gather nuanced data and these methods ensured that data collected is validated and/or triangulated. I argue that in Zimbabwe, monuments and public sculpture serve as the necessary interface of the visual, cultural and political discourse of a postcolonial nation that is constantly in transition and dialogue with the everyday realities of trying to understand and construct a national identity from a nest of sub-cultures. I further argue that monuments and public sculpture in Zimbabwe abound with political imperatives given that, as visual artefacts that interlace with ritual performance, they are conscious creations of society and are therefore constitutive of that society‘s heritage and social memory. Since independence in 1980, monuments and public sculpture have helped to open up discursive space and dialogue on national issues and myths. Such discursive spaces and dialogues, I also argue, have been particularly animated from the late 1990s to the present, a period in which the nation has engaged in self-introspection in the face of socio-political change and challenges in the continual process of imagining the Zimbabwean nation. Little research focusing on postcolonial public art in Zimbabwe has hitherto been undertaken. This study addresses gaps in this literature while also providing a spring board from which future studies may emerge. , Microsoft� Word 2010 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
Representation and use of indigenous heritage constructs : implications for the quality and relevance of heritage education in post colonial southern Africa
- Authors: Zazu, Cryton
- Date: 2013
- Subjects: Albany Museum (Grahamstown, South Africa) Cultural property -- Conservation and restoration -- Research -- Africa, Southern Great Zimbabwe (Extinct city) Indigenous peoples -- Material culture -- Africa, Southern Anthropological museums and collections -- Management -- Research -- Africa, Southern Cultural property -- Management -- Research Ethnoscience -- Study and teaching -- Africa, Southern
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1407 , http://hdl.handle.net/10962/d1002015
- Description: This study explores representation and use of indigenous heritage constructs with a view to identifying implications thereof for the quality and relevance of heritage education practices in post colonial southern Africa. Framed within a critical hermeneutic research paradigm under-laboured by critical realist ontology, the study was conducted using a multiple case study research design. The data collection protocol was three-phased, starting with a process of contextual profiling, within which insights were gained into discourses shaping the constitution and orientation of heritage education practices at the Albany Museum in South Africa, the Great Zimbabwe Monument in Zimbabwe and the Supa Ngwao Museum in Botswana. The second phase of data collection entailed modelling workshops in which educators engaged in discussion around the status of heritage education in post apartheid South Africa. This highlighted, through modelled lessons, some of the tensions, challenges and implications for working with notions of social transformation and inclusivity in heritage education. The third phase of data collection involved in-depth interviews. Twelve purposively selected research participants were interviewed between 2010 and 2011. Data generated across the study was processed and subjected to different levels of critical discourse analysis. Besides noting how heritage education in post colonial southern Africa is poorly framed and under-researched, this study revealed that current forms of representing indigenous heritage constructs are influenced more by socio-political discourses than the need to protect and conserve local heritage resources. The study also noted that the observed heritage education practices are oriented more towards addressing issues related to marginalisation and alienation of indigenous cultures and practices, than enhancing learners’ agency to manage and utilise local heritage resources in a more sustainable ways. Based on these findings the study recommends re-positioning heritage education within the framework of Education for Sustainable Development (ESD). ESD acknowledges both issues of social justice and the dialectical interplay between nature and culture; as such, it may allow for representation and use of indigenous heritage constructs in ways that expand current political orientations to include sustainability as an additional objective of heritage education. Given that little research focusing on heritage education has been undertaken within southern Africa, the findings of this study provide a basis upon which future research may emerge.
- Full Text:
- Authors: Zazu, Cryton
- Date: 2013
- Subjects: Albany Museum (Grahamstown, South Africa) Cultural property -- Conservation and restoration -- Research -- Africa, Southern Great Zimbabwe (Extinct city) Indigenous peoples -- Material culture -- Africa, Southern Anthropological museums and collections -- Management -- Research -- Africa, Southern Cultural property -- Management -- Research Ethnoscience -- Study and teaching -- Africa, Southern
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1407 , http://hdl.handle.net/10962/d1002015
- Description: This study explores representation and use of indigenous heritage constructs with a view to identifying implications thereof for the quality and relevance of heritage education practices in post colonial southern Africa. Framed within a critical hermeneutic research paradigm under-laboured by critical realist ontology, the study was conducted using a multiple case study research design. The data collection protocol was three-phased, starting with a process of contextual profiling, within which insights were gained into discourses shaping the constitution and orientation of heritage education practices at the Albany Museum in South Africa, the Great Zimbabwe Monument in Zimbabwe and the Supa Ngwao Museum in Botswana. The second phase of data collection entailed modelling workshops in which educators engaged in discussion around the status of heritage education in post apartheid South Africa. This highlighted, through modelled lessons, some of the tensions, challenges and implications for working with notions of social transformation and inclusivity in heritage education. The third phase of data collection involved in-depth interviews. Twelve purposively selected research participants were interviewed between 2010 and 2011. Data generated across the study was processed and subjected to different levels of critical discourse analysis. Besides noting how heritage education in post colonial southern Africa is poorly framed and under-researched, this study revealed that current forms of representing indigenous heritage constructs are influenced more by socio-political discourses than the need to protect and conserve local heritage resources. The study also noted that the observed heritage education practices are oriented more towards addressing issues related to marginalisation and alienation of indigenous cultures and practices, than enhancing learners’ agency to manage and utilise local heritage resources in a more sustainable ways. Based on these findings the study recommends re-positioning heritage education within the framework of Education for Sustainable Development (ESD). ESD acknowledges both issues of social justice and the dialectical interplay between nature and culture; as such, it may allow for representation and use of indigenous heritage constructs in ways that expand current political orientations to include sustainability as an additional objective of heritage education. Given that little research focusing on heritage education has been undertaken within southern Africa, the findings of this study provide a basis upon which future research may emerge.
- Full Text:
Rural livelihoods, forest products and poverty alleviation: the role of markets
- Authors: Mutamba, Manyewu
- Date: 2013
- Subjects: Rural development -- Zambia Rural poor -- Zambia Zambia -- Rural conditions Forest management -- Zambia Forest conservation -- Zambia Households -- Economic aspects -- Zambia Forest products -- Zambia Forests and forestry -- Zambia Non-timber forest products -- Zambia
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4741 , http://hdl.handle.net/10962/d1006081
- Description: There is growing acknowledgement that forests and forest products are central to rural livelihoods, but their role in lifting households out of poverty remains contentious. This study tested the assertion by proponents of forest based poverty alleviation that changing conditions in the use and management of forests and forest products has created opportunities for poor rural households to lift themselves out of poverty. The study used detailed annual income data from various household sectors in two contrasting sites in Zambia, namely Mufulira and Kabompo districts, analyzing the relative contribution of forest income to household livelihood, the effect of household wealth status on forest use, factors driving household participation in forest product trade, and the influence of distance to urban markets on trends in the use of forest products. The study found that forest based activities play a central role in the livelihoods of households in the two study sites, contributing close to half of total household income, and dwarfing the contribution of agricultural sectors such as cropping and livestock rearing which are generally regarded as the main income sources for rural households. Forest based sectors were also found to be particularly valuable sources of household cash, often coming at critical times to meet basic needs. The findings also revealed that without the contribution of forest income, the proportion of households that would fall below the poverty line would increase sharply in both study sites. Wealthier households earned higher magnitudes of both subsistence and cash income from forest based activities than their poorer counterparts. Even the share of total household income coming from forest based activities was also higher among these better-off households, confirming that these activities are lucrative and they are improving the wealth status of households. Household participation in forest product trade was found to be influenced by demographic factors such as number of productive household members, age and the education level of the household head. Economic factors such as the level of income from wage labour, household poverty level, and ownership of key assets such as a bicycle were found to be important. Distance of homestead from the forest was also found to be an important contextual variable. The influence of urban demand on the use of forest products by rural households was significant in the study area. Although local sales played an important part as a source of cash for households, the most preferred channels for trade were linked to urban markets, either through roadside markets, middlemen or direct sales to urban buyers. The study concluded that with improved local organization and support for product development and marketing, some forest based activities provide a viable poverty alleviation option for poor rural households who otherwise have limited economic opportunities to escape poverty.
- Full Text:
- Authors: Mutamba, Manyewu
- Date: 2013
- Subjects: Rural development -- Zambia Rural poor -- Zambia Zambia -- Rural conditions Forest management -- Zambia Forest conservation -- Zambia Households -- Economic aspects -- Zambia Forest products -- Zambia Forests and forestry -- Zambia Non-timber forest products -- Zambia
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4741 , http://hdl.handle.net/10962/d1006081
- Description: There is growing acknowledgement that forests and forest products are central to rural livelihoods, but their role in lifting households out of poverty remains contentious. This study tested the assertion by proponents of forest based poverty alleviation that changing conditions in the use and management of forests and forest products has created opportunities for poor rural households to lift themselves out of poverty. The study used detailed annual income data from various household sectors in two contrasting sites in Zambia, namely Mufulira and Kabompo districts, analyzing the relative contribution of forest income to household livelihood, the effect of household wealth status on forest use, factors driving household participation in forest product trade, and the influence of distance to urban markets on trends in the use of forest products. The study found that forest based activities play a central role in the livelihoods of households in the two study sites, contributing close to half of total household income, and dwarfing the contribution of agricultural sectors such as cropping and livestock rearing which are generally regarded as the main income sources for rural households. Forest based sectors were also found to be particularly valuable sources of household cash, often coming at critical times to meet basic needs. The findings also revealed that without the contribution of forest income, the proportion of households that would fall below the poverty line would increase sharply in both study sites. Wealthier households earned higher magnitudes of both subsistence and cash income from forest based activities than their poorer counterparts. Even the share of total household income coming from forest based activities was also higher among these better-off households, confirming that these activities are lucrative and they are improving the wealth status of households. Household participation in forest product trade was found to be influenced by demographic factors such as number of productive household members, age and the education level of the household head. Economic factors such as the level of income from wage labour, household poverty level, and ownership of key assets such as a bicycle were found to be important. Distance of homestead from the forest was also found to be an important contextual variable. The influence of urban demand on the use of forest products by rural households was significant in the study area. Although local sales played an important part as a source of cash for households, the most preferred channels for trade were linked to urban markets, either through roadside markets, middlemen or direct sales to urban buyers. The study concluded that with improved local organization and support for product development and marketing, some forest based activities provide a viable poverty alleviation option for poor rural households who otherwise have limited economic opportunities to escape poverty.
- Full Text:
Synthesis, characterisation and biological activity of 2-(methylthiomethyl)anilines, 2-(methylthio)anilines, their Schiff-base derivatives and metal(II) (Co, Ni, Cu) complexes
- Olalekan, Temitope Elizabeth
- Authors: Olalekan, Temitope Elizabeth
- Date: 2013
- Subjects: Aniline , Schiff bases , Ligands , Nuclear magnetic resonance spectroscopy , Chelates , X-ray crystallography , Antimalarials
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4562 , http://hdl.handle.net/10962/d1020868
- Description: A series of 31 sulfur-nitrogen donor ligands and 64 metal(II) complexes have been investigated. The thiomethylated aniline ligands 2–(methylthiomethyl)aniline 2MT and 2–(methylthio)aniline 2MA were synthesized with their substituted derivatives (-Me, -MeO, -Cl, -Br, -NO2) to serve as chelating agents. These ligands behave as bidentate ligands with SN donor group with Co(II), Ni(II) and Cu(II). The Co(II) and Ni(II) complexes have the ML2Cl2 molecular formula while the Cu(II) complexes formed with MLCl2 stoichiometry where L is the bidentate ligand. The ligands and their metal(II) complexes have been characterized by elemental analysis and with spectroscopic techniques. The trend observed in the NMR spectra and IR frequencies of the thiomethylated compounds shows there is a significant difference between the 2MT and 2MA series as a result of sulfur lone pairs extending the conjugation of the aromatic ring in the case of the latter. The effect of the position and electronic nature of ring substituent on the NMR shifts of the amine protons is discussed. The 6- and 5-membered chelate complexes formed by the 2MT and 2MA ligands respectively do not show significant diversity in their spectroscopic properties. From the elemental analysis for the Co(II) and Ni(II) complexes, their compositions reveal 1:2 M:L stoichiometry with 2 chlorine atoms from the respective metal salts. In addition, the spectroscopic data are largely indicative of tetragonally distorted structures for these solid complexes. The X-ray crystallography data reveal the Cu(II) complexes exist as square pyramidal dimers and with long Cu–Cl equitorial bonds fit into the tetragonally distorted octahedral structure. The electrolytic nature of Co(II) and Cu(II) complexes in DMF were found to be similar, they behave as non electrolytes in contrast to Ni(II) complexes which are 1:1 electrolytes. The electronic spectra of these metal(II) complexes were found to be different for both their solid forms and in solutions of DMF and DMSO and this has been discussed. The thiomethylated aniline ligands possess the amine and thioether groups which are present in many known biologically active compounds, hence the biological activity of the ligands and their metal complexes were tested against three strains of bacteria and one fungus. The methoxy-substituted derivatives were found to possess better inhibitory activity and this was similarly reflected in the metal(II) complexes. The activity of the complexes can be said to be in the order, Cu(II) > Co(II) > Ni(II). The Schiff-base derivatives were prepared from the ligands and para-methoxysalicylaldehyde and their Cu(II) complexes were synthesized in order to determine their biological activity. The Schiff-base ligands were found to be less active than their parent ligands. The Cu(II) complexes are not soluble in water, DMSO or DMF, as a result and could not be evaluated for their biological activity. Based on the good results from the antimicrobial evaluation, the antiplasmodial activity of some of the Co(II), Ni(II) and Cu(II) complexes of the thiomethylated ligands against Plasmodium falciparum (FCR-3) was determined. At 50 μM concentration level, the Cu(II) complexes show activity equal or better than the prophylactic chloroquine. The Cu(II) complexes with the methoxy-substituted demonstrated exceptional activity but their Co(II) and Ni(II) analogues did not show any activity. The cytotoxicity of the active Cu(II) complexes at 50 μM concentration was determined against the breast cancer cell line (MDA-MB-231). The compounds destroyed the cancer cell in the range of 28–40%, thus showing their preferred activity against the parasitic cell instead of the cancer cell. The selectivity demonstrated by these compounds have shown them to be potential antimalarial agents and this could be further investigated.
- Full Text:
- Authors: Olalekan, Temitope Elizabeth
- Date: 2013
- Subjects: Aniline , Schiff bases , Ligands , Nuclear magnetic resonance spectroscopy , Chelates , X-ray crystallography , Antimalarials
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4562 , http://hdl.handle.net/10962/d1020868
- Description: A series of 31 sulfur-nitrogen donor ligands and 64 metal(II) complexes have been investigated. The thiomethylated aniline ligands 2–(methylthiomethyl)aniline 2MT and 2–(methylthio)aniline 2MA were synthesized with their substituted derivatives (-Me, -MeO, -Cl, -Br, -NO2) to serve as chelating agents. These ligands behave as bidentate ligands with SN donor group with Co(II), Ni(II) and Cu(II). The Co(II) and Ni(II) complexes have the ML2Cl2 molecular formula while the Cu(II) complexes formed with MLCl2 stoichiometry where L is the bidentate ligand. The ligands and their metal(II) complexes have been characterized by elemental analysis and with spectroscopic techniques. The trend observed in the NMR spectra and IR frequencies of the thiomethylated compounds shows there is a significant difference between the 2MT and 2MA series as a result of sulfur lone pairs extending the conjugation of the aromatic ring in the case of the latter. The effect of the position and electronic nature of ring substituent on the NMR shifts of the amine protons is discussed. The 6- and 5-membered chelate complexes formed by the 2MT and 2MA ligands respectively do not show significant diversity in their spectroscopic properties. From the elemental analysis for the Co(II) and Ni(II) complexes, their compositions reveal 1:2 M:L stoichiometry with 2 chlorine atoms from the respective metal salts. In addition, the spectroscopic data are largely indicative of tetragonally distorted structures for these solid complexes. The X-ray crystallography data reveal the Cu(II) complexes exist as square pyramidal dimers and with long Cu–Cl equitorial bonds fit into the tetragonally distorted octahedral structure. The electrolytic nature of Co(II) and Cu(II) complexes in DMF were found to be similar, they behave as non electrolytes in contrast to Ni(II) complexes which are 1:1 electrolytes. The electronic spectra of these metal(II) complexes were found to be different for both their solid forms and in solutions of DMF and DMSO and this has been discussed. The thiomethylated aniline ligands possess the amine and thioether groups which are present in many known biologically active compounds, hence the biological activity of the ligands and their metal complexes were tested against three strains of bacteria and one fungus. The methoxy-substituted derivatives were found to possess better inhibitory activity and this was similarly reflected in the metal(II) complexes. The activity of the complexes can be said to be in the order, Cu(II) > Co(II) > Ni(II). The Schiff-base derivatives were prepared from the ligands and para-methoxysalicylaldehyde and their Cu(II) complexes were synthesized in order to determine their biological activity. The Schiff-base ligands were found to be less active than their parent ligands. The Cu(II) complexes are not soluble in water, DMSO or DMF, as a result and could not be evaluated for their biological activity. Based on the good results from the antimicrobial evaluation, the antiplasmodial activity of some of the Co(II), Ni(II) and Cu(II) complexes of the thiomethylated ligands against Plasmodium falciparum (FCR-3) was determined. At 50 μM concentration level, the Cu(II) complexes show activity equal or better than the prophylactic chloroquine. The Cu(II) complexes with the methoxy-substituted demonstrated exceptional activity but their Co(II) and Ni(II) analogues did not show any activity. The cytotoxicity of the active Cu(II) complexes at 50 μM concentration was determined against the breast cancer cell line (MDA-MB-231). The compounds destroyed the cancer cell in the range of 28–40%, thus showing their preferred activity against the parasitic cell instead of the cancer cell. The selectivity demonstrated by these compounds have shown them to be potential antimalarial agents and this could be further investigated.
- Full Text:
The adaptation of the 'Clinical Outcomes in Routine Evaluation-Outcome Measure' (CORE-OM) from English into a valid Xhosa measure of distress
- Authors: Campbell, Megan Michelle
- Date: 2013 , 2013-06-06
- Subjects: Psychometrics -- Research -- South Africa Psychology -- Mathematical models -- Research -- South Africa Psychological tests -- Research -- South Africa Mental health services -- Research -- South Africa Health services accessibility -- Research -- South Africa Language disorders -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2894 , http://hdl.handle.net/10962/d1001538
- Description: In South Africa access to mental healthcare resources is restricted for a number of reasons including language barriers that prevent suitable communication between mental healthcare professionals and African language speaking South Africans. The translation of psychometric tools into African languages has been identified as one method in improving access to psychological services for African language speakers. The Clinical Outcomes in Routine Evaluation - Outcome Measure (CORE-OM) has demonstrated its clinical utility within the United Kingdom (UK) National Healthcare Service (NHS) as a standardised psychotherapy outcome measure that evaluates the degree of psychological distress individuals present with at the start of psychotherapy treatment, and the degree of change that has been effected at the termination of therapy. A measure like the CORE-OM holds valuable clinical utility for the South African context. This thesis argues that the availability of a valid Xhosa version of the CORE-OM would allow for improved access to psychotherapy resources for Xhosa speaking individuals, and allow for the evaluation of the effectiveness of psychotherapy interventions conducted in Xhosa. The CORE-OM developers have provided a translation design and set of guidelines to standardise the translation of the CORE-OM into different languages. However this thesis argues that these guidelines are incomplete. Instead International Test Commission (ITC) guidelines are recommended as a culturally sensitive method to supplement current CORE-OM translation guidelines, in order to generate a valid Xhosa measure of distress. A mixed methods approach is applied which first investigates the construct equivalence and bias of the CORE-OM English version within a South African student population sample, both qualitatively and quantitatively, in order to establish the degree of adaptation required to generate a valid Xhosa version of distress. Next the CORE-OM English version is translated into Xhosa using the five-stage translation design prescribed by the CORE System Trust, supplemented by ITC guidelines. All changes made to the CORE-OM during translation into Xhosa are documented. The CORE-OM Xhosa version is then investigated for reliability and validity. This investigation reveals low internal reliability within the subjective wellbeing domain indicating that these items are less meaningful as depictions of distress within the Xhosa language. A reduced version of the CORE-OM demonstrates strong psychometric properties as a valid Xhosa measure of distress.
- Full Text:
- Authors: Campbell, Megan Michelle
- Date: 2013 , 2013-06-06
- Subjects: Psychometrics -- Research -- South Africa Psychology -- Mathematical models -- Research -- South Africa Psychological tests -- Research -- South Africa Mental health services -- Research -- South Africa Health services accessibility -- Research -- South Africa Language disorders -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2894 , http://hdl.handle.net/10962/d1001538
- Description: In South Africa access to mental healthcare resources is restricted for a number of reasons including language barriers that prevent suitable communication between mental healthcare professionals and African language speaking South Africans. The translation of psychometric tools into African languages has been identified as one method in improving access to psychological services for African language speakers. The Clinical Outcomes in Routine Evaluation - Outcome Measure (CORE-OM) has demonstrated its clinical utility within the United Kingdom (UK) National Healthcare Service (NHS) as a standardised psychotherapy outcome measure that evaluates the degree of psychological distress individuals present with at the start of psychotherapy treatment, and the degree of change that has been effected at the termination of therapy. A measure like the CORE-OM holds valuable clinical utility for the South African context. This thesis argues that the availability of a valid Xhosa version of the CORE-OM would allow for improved access to psychotherapy resources for Xhosa speaking individuals, and allow for the evaluation of the effectiveness of psychotherapy interventions conducted in Xhosa. The CORE-OM developers have provided a translation design and set of guidelines to standardise the translation of the CORE-OM into different languages. However this thesis argues that these guidelines are incomplete. Instead International Test Commission (ITC) guidelines are recommended as a culturally sensitive method to supplement current CORE-OM translation guidelines, in order to generate a valid Xhosa measure of distress. A mixed methods approach is applied which first investigates the construct equivalence and bias of the CORE-OM English version within a South African student population sample, both qualitatively and quantitatively, in order to establish the degree of adaptation required to generate a valid Xhosa version of distress. Next the CORE-OM English version is translated into Xhosa using the five-stage translation design prescribed by the CORE System Trust, supplemented by ITC guidelines. All changes made to the CORE-OM during translation into Xhosa are documented. The CORE-OM Xhosa version is then investigated for reliability and validity. This investigation reveals low internal reliability within the subjective wellbeing domain indicating that these items are less meaningful as depictions of distress within the Xhosa language. A reduced version of the CORE-OM demonstrates strong psychometric properties as a valid Xhosa measure of distress.
- Full Text:
The application of the Rome Statute of the International Criminal Court to illegal natural resource exploitation in the Congo conflic
- Authors: Tsabora, James
- Date: 2013 , 2013-03-27
- Subjects: International criminal law -- Congo (Democratic Republic) Criminal procedure (International law) Natural resources -- Law and legislation -- Congo (Democratic Republic)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3665 , http://hdl.handle.net/10962/d1002612
- Description: This thesis explores the phenomenon of illegal natural resource exploitation in conflict zones and the application of international criminal law, particularly the Rome Statute of the International Criminal Court to combat the roblem. Contemporary African conflicts, such as the Democratic Republic of Congo conflict explored as a case study herein, have become increasingly distinguishable by the tight connection between war and various forms of illegal natural resource exploitation, particularly targeting valuable and precious mineral resources. With their incidence being highest in Africa, wars funded by illegally exploited natural resources have gradually become one of the greatest threats to regional peace and human security on the African continent. The Congo conflict clearly demonstrated the problematic nature and impact of illegal natural resource exploitation and the widespread human, economic and political costs associated with this phenomenon. This thesis is based on the initial assumption that the quest by conflict actors to profit from war through illegal natural resource exploitation activities is at the centre of the commission of serious human rights violations as well as the complexity and longevity of African conflicts. Developments in international criminal law, culminating in the adoption of the Rome Statute and the establishment of the International Criminal Court, have given impetus to the argument that any group of conflict actors should be subjected to the individual criminal responsibility regime of this legal framework. A further underlying assumption of this thesis is therefore that international criminal law can constrain the acts and conduct defined in this thesis as illegal natural resource exploitation activities since they constitute war crimes under the Rome Statute framework. However, despite illustrating the illegal resource exploitation activities of various state and non-state actors, this thesis is confined to an application of the Rome Statute based international criminal liability regime against members of armed rebel groups involved in such acts. In exploring these issues, this work examines international criminal law institutions and the relevance of international criminal justice in addressing particular phenomena prevalent during African armed conflicts. It further provides the stage to assess the potential of international criminal law in safeguarding natural resources for the benefit of African societies perennially exposed to the depredations of natural resource financed warfare. , Microsoft� Office Word 2007 , Adobe Acrobat 9.53 Paper Capture Plug-in
- Full Text:
- Authors: Tsabora, James
- Date: 2013 , 2013-03-27
- Subjects: International criminal law -- Congo (Democratic Republic) Criminal procedure (International law) Natural resources -- Law and legislation -- Congo (Democratic Republic)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3665 , http://hdl.handle.net/10962/d1002612
- Description: This thesis explores the phenomenon of illegal natural resource exploitation in conflict zones and the application of international criminal law, particularly the Rome Statute of the International Criminal Court to combat the roblem. Contemporary African conflicts, such as the Democratic Republic of Congo conflict explored as a case study herein, have become increasingly distinguishable by the tight connection between war and various forms of illegal natural resource exploitation, particularly targeting valuable and precious mineral resources. With their incidence being highest in Africa, wars funded by illegally exploited natural resources have gradually become one of the greatest threats to regional peace and human security on the African continent. The Congo conflict clearly demonstrated the problematic nature and impact of illegal natural resource exploitation and the widespread human, economic and political costs associated with this phenomenon. This thesis is based on the initial assumption that the quest by conflict actors to profit from war through illegal natural resource exploitation activities is at the centre of the commission of serious human rights violations as well as the complexity and longevity of African conflicts. Developments in international criminal law, culminating in the adoption of the Rome Statute and the establishment of the International Criminal Court, have given impetus to the argument that any group of conflict actors should be subjected to the individual criminal responsibility regime of this legal framework. A further underlying assumption of this thesis is therefore that international criminal law can constrain the acts and conduct defined in this thesis as illegal natural resource exploitation activities since they constitute war crimes under the Rome Statute framework. However, despite illustrating the illegal resource exploitation activities of various state and non-state actors, this thesis is confined to an application of the Rome Statute based international criminal liability regime against members of armed rebel groups involved in such acts. In exploring these issues, this work examines international criminal law institutions and the relevance of international criminal justice in addressing particular phenomena prevalent during African armed conflicts. It further provides the stage to assess the potential of international criminal law in safeguarding natural resources for the benefit of African societies perennially exposed to the depredations of natural resource financed warfare. , Microsoft� Office Word 2007 , Adobe Acrobat 9.53 Paper Capture Plug-in
- Full Text:
The ecology and management of the large carnivore guild on Shamwari Game Reserve, Eastern Cape
- Authors: O'Brien, John William
- Date: 2013
- Subjects: Cheetah -- Behavior -- South Africa -- Shamwari Game Reserve Shamwari Game Reserve (South Africa) Carnivora -- South Africa -- Shamwari Game Reserve Wildlife conservation -- South Africa -- Shamwari Game Reserve Game reserves -- Management -- South Africa -- Shamwari Game Reserve Lion -- Behavior -- South Africa -- Shamwari Game Reserve Lion -- Ecology -- South Africa -- Shamwari Game Reserve African wild dog -- Ecology -- South Africa -- Shamwari Game Reserve Cheetah -- Ecology -- South Africa -- Shamwari Game Reserve Lion -- Food -- South Africa -- Shamwari Game Reserve Lion -- Food -- South Africa -- Shamwari Game Reserve Cheetah -- Food -- South Africa -- Shamwari Game Reserve African wild dog -- Behavior -- South Africa -- Shamwari Game Reserve African wild dog -- Food -- South Africa -- Shamwari Game Reserve Leopard -- Behavior -- South Africa -- Shamwari Game Reserve Leopard -- Ecology -- South Africa -- Shamwari Game Reserve Leopard -- Food --South Africa -- Shamwari Game Reserve
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5609 , http://hdl.handle.net/10962/d1002604
- Description: Shamwari Game Reserve was the first enclosed conservation area in the Eastern Cape Province of South Africa to reintroduce free ranging lions, cheetahs, leopards and wild dogs back into their historic range. At that time (2000 – 2001), little information was available on the ecology and behaviour of these predators in the habitats of the Eastern Cape, and management decisions were based on assumptions and unfounded comparisons with extant populations but from quite different habitats. The aim of this study was therefore to obtain a better understanding of the feeding ecology and space use of the predator guild, and the carrying capacity of Shamwari Game Reserve to enable more informed management decisions. In addition, the reserve is a photographic based tourism venture and understanding both the ecological and financial sustainability of the predator guild was important. The diets of the predators were similar to those reported in other studies; larger predators killed a greater range of prey species than did smaller predators and a small number of prey species made up the majority of the kills. The larger predators had a higher mean kill mass than the smaller species and prey selection was influenced by prey size, prey abundance and prey habitat preference, and risk associated with hunting the species. Diet was flexible and responded to natural and management induced changes in prey abundance. There was a considerable overlap in space use by the lions, cheetahs and leopards with their core areas being centred on and around the Bushmans River. Space use was driven by resource distribution and landscape attributes, and by the presence of other predators of the same or different species. The long term viability of wild dog within the reserve was explored and the results confirmed that there was neither the required space nor the ecological processes and the wild dogs were removed from the reserve. A carrying capacity of the reserve for the predator guild was determined using the Maximum Sustainable Yield method to assess the potential prey species off take and a resultant density of 3.3 to 6.6 lion female equivalent units per 10 000 ha was established. The natural carrying capacity of the reserve with respect to predators will not sustain the tourism objectives and consequently prey supplementation was necessary to maintain predator density at levels high enough to sustain tourism. Under these conditions the large predator guild is still sustainable financially although careful, responsible management is needed to provide ecological sustainability.
- Full Text:
- Authors: O'Brien, John William
- Date: 2013
- Subjects: Cheetah -- Behavior -- South Africa -- Shamwari Game Reserve Shamwari Game Reserve (South Africa) Carnivora -- South Africa -- Shamwari Game Reserve Wildlife conservation -- South Africa -- Shamwari Game Reserve Game reserves -- Management -- South Africa -- Shamwari Game Reserve Lion -- Behavior -- South Africa -- Shamwari Game Reserve Lion -- Ecology -- South Africa -- Shamwari Game Reserve African wild dog -- Ecology -- South Africa -- Shamwari Game Reserve Cheetah -- Ecology -- South Africa -- Shamwari Game Reserve Lion -- Food -- South Africa -- Shamwari Game Reserve Lion -- Food -- South Africa -- Shamwari Game Reserve Cheetah -- Food -- South Africa -- Shamwari Game Reserve African wild dog -- Behavior -- South Africa -- Shamwari Game Reserve African wild dog -- Food -- South Africa -- Shamwari Game Reserve Leopard -- Behavior -- South Africa -- Shamwari Game Reserve Leopard -- Ecology -- South Africa -- Shamwari Game Reserve Leopard -- Food --South Africa -- Shamwari Game Reserve
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5609 , http://hdl.handle.net/10962/d1002604
- Description: Shamwari Game Reserve was the first enclosed conservation area in the Eastern Cape Province of South Africa to reintroduce free ranging lions, cheetahs, leopards and wild dogs back into their historic range. At that time (2000 – 2001), little information was available on the ecology and behaviour of these predators in the habitats of the Eastern Cape, and management decisions were based on assumptions and unfounded comparisons with extant populations but from quite different habitats. The aim of this study was therefore to obtain a better understanding of the feeding ecology and space use of the predator guild, and the carrying capacity of Shamwari Game Reserve to enable more informed management decisions. In addition, the reserve is a photographic based tourism venture and understanding both the ecological and financial sustainability of the predator guild was important. The diets of the predators were similar to those reported in other studies; larger predators killed a greater range of prey species than did smaller predators and a small number of prey species made up the majority of the kills. The larger predators had a higher mean kill mass than the smaller species and prey selection was influenced by prey size, prey abundance and prey habitat preference, and risk associated with hunting the species. Diet was flexible and responded to natural and management induced changes in prey abundance. There was a considerable overlap in space use by the lions, cheetahs and leopards with their core areas being centred on and around the Bushmans River. Space use was driven by resource distribution and landscape attributes, and by the presence of other predators of the same or different species. The long term viability of wild dog within the reserve was explored and the results confirmed that there was neither the required space nor the ecological processes and the wild dogs were removed from the reserve. A carrying capacity of the reserve for the predator guild was determined using the Maximum Sustainable Yield method to assess the potential prey species off take and a resultant density of 3.3 to 6.6 lion female equivalent units per 10 000 ha was established. The natural carrying capacity of the reserve with respect to predators will not sustain the tourism objectives and consequently prey supplementation was necessary to maintain predator density at levels high enough to sustain tourism. Under these conditions the large predator guild is still sustainable financially although careful, responsible management is needed to provide ecological sustainability.
- Full Text:
The impact and control of waterweeds in the Southern Mozambique Basin rivers
- Authors: Langa, Sílvia da Fátima
- Date: 2013
- Subjects: Water hyacinth -- Mozambique Water ferns -- Mozambique Water lettuce -- Mozambique Salvinia molesta -- Mozambique Aquatic weeds -- Mozambique Invasive plants -- Mozambique Aquatic weeds -- Control -- Mozambique Invasive plants -- Control -- Mozambique Aquatic weeds -- Biological control -- Mozambique Invasive plants -- Biological control -- Mozambique Aquatic resources -- Management -- Mozambique Beetles -- Mozambique Insects as biological pest control agents -- Mozambique
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5587 , http://hdl.handle.net/10962/d1001905
- Description: In Mozambique, establishment of aquatic weeds has been enhanced through the increased enrichment of water bodies by nutrient runoffs from human and agricultural wastes that lead to an increase in nitrate and phosphate in the water. The aquatic weeds, water hyacinth (Eichhornia crassipes), red water fern ( Azolla microphylla), water lettuce (Pistia stratiotes) and salvinia (Salvinia molesta) were found in most watercourses in Mozambique and are becoming aggressive in some watercourses, especially in the Umbeluzi and Incomati rivers. Farmers and people living along the rivers are aware of the negative impact of the water weeds because the large mats of weeds cause loss of shoreline and navigability along the rivers. Other commonly perceived effects of aquatic invasive plants in Mozambique rivers include: reduced navigable surface area; difficulties for fishermen, which reduces income; increased prevalence of insects and insect-borne disease, and decreased aesthetic value. The methods currently used for the control and management of the aquatic weeds are mechanical and manual control. Both methods are costly, time consuming, and only provide a short-term solution to the problem. The study found that the weevils Neochetina eichhorniae and N. bruchi were effective biological control agents in the study area but their impact is too gradual compared to the aggressive proliferation of water hyacinth. The one year lab-experiment clearly demonstrated that the water lettuce weed had a significant impact on the recruitment of macro-invertebrates to the artificial substrates, and water lettuce contributed to the reduction of oxygen in the water and consequent reduction of macro-invertebrate abundance and diversity. The biodiversity recovered at the same time in the pools containing water lettuce controlled by N. affinis and water lettuce controlled by herbicide, but richness and diversity of macro-invertebrates was higher in the water lettuce controlled by N affinis during the first sampling occasion compared to the water lettuce in pools controlled by herbicide, where macro-invertebrates increased only when DO levels recovered after water lettuce mat decay. The number of taxa recorded in this study is an indication of the significance of macro-invertebrates in an aquatic environment. This therefore emphasizes the need for more research efforts into macrophyte and macro-invertebrate associations in the aquatic system to better understand the implications of habitat modification arising from human activities. It will also enable us to be better equipped with a more appropriate ecological understanding for aquatic resources management.
- Full Text:
- Authors: Langa, Sílvia da Fátima
- Date: 2013
- Subjects: Water hyacinth -- Mozambique Water ferns -- Mozambique Water lettuce -- Mozambique Salvinia molesta -- Mozambique Aquatic weeds -- Mozambique Invasive plants -- Mozambique Aquatic weeds -- Control -- Mozambique Invasive plants -- Control -- Mozambique Aquatic weeds -- Biological control -- Mozambique Invasive plants -- Biological control -- Mozambique Aquatic resources -- Management -- Mozambique Beetles -- Mozambique Insects as biological pest control agents -- Mozambique
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5587 , http://hdl.handle.net/10962/d1001905
- Description: In Mozambique, establishment of aquatic weeds has been enhanced through the increased enrichment of water bodies by nutrient runoffs from human and agricultural wastes that lead to an increase in nitrate and phosphate in the water. The aquatic weeds, water hyacinth (Eichhornia crassipes), red water fern ( Azolla microphylla), water lettuce (Pistia stratiotes) and salvinia (Salvinia molesta) were found in most watercourses in Mozambique and are becoming aggressive in some watercourses, especially in the Umbeluzi and Incomati rivers. Farmers and people living along the rivers are aware of the negative impact of the water weeds because the large mats of weeds cause loss of shoreline and navigability along the rivers. Other commonly perceived effects of aquatic invasive plants in Mozambique rivers include: reduced navigable surface area; difficulties for fishermen, which reduces income; increased prevalence of insects and insect-borne disease, and decreased aesthetic value. The methods currently used for the control and management of the aquatic weeds are mechanical and manual control. Both methods are costly, time consuming, and only provide a short-term solution to the problem. The study found that the weevils Neochetina eichhorniae and N. bruchi were effective biological control agents in the study area but their impact is too gradual compared to the aggressive proliferation of water hyacinth. The one year lab-experiment clearly demonstrated that the water lettuce weed had a significant impact on the recruitment of macro-invertebrates to the artificial substrates, and water lettuce contributed to the reduction of oxygen in the water and consequent reduction of macro-invertebrate abundance and diversity. The biodiversity recovered at the same time in the pools containing water lettuce controlled by N. affinis and water lettuce controlled by herbicide, but richness and diversity of macro-invertebrates was higher in the water lettuce controlled by N affinis during the first sampling occasion compared to the water lettuce in pools controlled by herbicide, where macro-invertebrates increased only when DO levels recovered after water lettuce mat decay. The number of taxa recorded in this study is an indication of the significance of macro-invertebrates in an aquatic environment. This therefore emphasizes the need for more research efforts into macrophyte and macro-invertebrate associations in the aquatic system to better understand the implications of habitat modification arising from human activities. It will also enable us to be better equipped with a more appropriate ecological understanding for aquatic resources management.
- Full Text:
The influence of overwash and breaching events on the spatial and temporal patterns in ichthyofauna community composition in a temporarily open/closed southern African estuary
- Authors: Tweddle, Gavin Paul
- Date: 2013
- Subjects: Estuarine fishes -- Africa, Southern Marine fishes -- Africa, Southern Fishes -- Breeding -- Africa, Southern Fishes -- Effect of habitat modification on -- Africa, Southern Fishes -- Spawning -- Africa, Southern Gobiidae -- Africa, Southern Estuaries -- Africa, Southern Estuarine ecology -- Africa, Southern
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5610 , http://hdl.handle.net/10962/d1002957
- Description: This study assessed the importance of overwash and breaching events on the ichthyofaunal community structure in the medium-sized temporarily open/closed Mpekweni Estuary located on the southeast coastline of southern Africa. The fish in the littoral zone of the estuary were sampled using a 5m seine net while the channel region was sampled using two nets, a smaller meshed 30m seine net to target the estuarine spawning species and the juvenile estuarine-dependant marine spawners, and a larger meshed 50m seine net to target the larger marine and freshwater spawning species. Intensive monthly sampling over two years provided data on selected physico-chemical and biological parameters. During the two year sampling period from November 2005 to October 2007 the estuary breached in late July 2006 and remained open till the sandbar re-formed across the mouth in late December 2006. Thus, sampling encompassed three open/closed phases 1) initial closed period, 2) open period and 3) re-closed period after the berm was re-formed. The open period was divided into two phases 1) the out-flow phase and 2) the tidal phase. A total of 36 fish species representing 19 families were sampled using the various seine nets employed during the investigation. In the littoral zone, the estuarine spawners (Estuarine Utilisation Category, [EUC] I), mainly the Gobiidae, Glossogobius callidus, dominated the samples numerically and by biomass. The smaller estuarine spawning species sampled in the channel were numerically dominated by Gilchristella aestuaria in conjunction with two other EUC I species, Atherina breviceps and G. callidus. The estuarine-dependant marine spawners (EUC II), however, dominated the ichthyofaunal biomass of the channel. The abundance and biomass of the larger species targeted were dominated by estuarine-dependant marine spawning species (EUC II), principally Rhabdosargus holubi. During the closed periods of the estuary, total fish abundance and biomass displayed weak seasonal patterns. The breaching event and subsequent open period was associated with a decrease in the total abundances of fish in the littoral zone and channel of the estuary, reflecting the out-flow of estuarine biomass-rich water into the marine environment. The breaching event coincided with a shift in the community composition of the ichthyofauna, reflecting the recruitment of marine spawning species into the estuary. Numerical analysis identified two distinct spatial fish communities within the estuary, a community associated with the mouth region and one comprising the rest of the estuary. The absence of any further spatial patterns in the ichthyofaunal community structure within the Mpekweni Estuary appear to be ascribed to the virtual absence of horizontal patterns in physico-chemical and biological parameters recorded in the system. Cohort analyses were employed to determine possible recruitment events for selected estuarine and marine spawning species. The estuarine spawning species displayed continuous recruitment patterns throughout the study, which appeared to be unaffected by the breaching event. Conversely, the larger marine spawning species displayed multiple cohorts, indicating non-continuous recruitment. Subsequent retrospective analysis of cohorts for the different species identified summer recruitment peaks that coincided with the breaching event and open period. Minor recruitment of marine spawning species also occurred during overwash events. The recruitment of ichthyofauna into the estuary was quantified during three distinct hydrological events: overwash, out-flow phase immediately after breaching and tidal phase during the period when the mouth was open. Estimates of fish recruitment were highest during the outflow phase immediately after the estuary breached and declined as the estuary became tidally inundated with marine water. Although not as high as the outflow and tidal phases, recruitment was evident during overwash events. Results of the current study highlight the importance of both breaching and overwashing events in structuring the ichthyofaunal community composition in a medium-sized southern African temporarily open/closed estuary. These results are broadly in agreement with similar studies conducted both locally and in other regions of the world.
- Full Text:
- Authors: Tweddle, Gavin Paul
- Date: 2013
- Subjects: Estuarine fishes -- Africa, Southern Marine fishes -- Africa, Southern Fishes -- Breeding -- Africa, Southern Fishes -- Effect of habitat modification on -- Africa, Southern Fishes -- Spawning -- Africa, Southern Gobiidae -- Africa, Southern Estuaries -- Africa, Southern Estuarine ecology -- Africa, Southern
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5610 , http://hdl.handle.net/10962/d1002957
- Description: This study assessed the importance of overwash and breaching events on the ichthyofaunal community structure in the medium-sized temporarily open/closed Mpekweni Estuary located on the southeast coastline of southern Africa. The fish in the littoral zone of the estuary were sampled using a 5m seine net while the channel region was sampled using two nets, a smaller meshed 30m seine net to target the estuarine spawning species and the juvenile estuarine-dependant marine spawners, and a larger meshed 50m seine net to target the larger marine and freshwater spawning species. Intensive monthly sampling over two years provided data on selected physico-chemical and biological parameters. During the two year sampling period from November 2005 to October 2007 the estuary breached in late July 2006 and remained open till the sandbar re-formed across the mouth in late December 2006. Thus, sampling encompassed three open/closed phases 1) initial closed period, 2) open period and 3) re-closed period after the berm was re-formed. The open period was divided into two phases 1) the out-flow phase and 2) the tidal phase. A total of 36 fish species representing 19 families were sampled using the various seine nets employed during the investigation. In the littoral zone, the estuarine spawners (Estuarine Utilisation Category, [EUC] I), mainly the Gobiidae, Glossogobius callidus, dominated the samples numerically and by biomass. The smaller estuarine spawning species sampled in the channel were numerically dominated by Gilchristella aestuaria in conjunction with two other EUC I species, Atherina breviceps and G. callidus. The estuarine-dependant marine spawners (EUC II), however, dominated the ichthyofaunal biomass of the channel. The abundance and biomass of the larger species targeted were dominated by estuarine-dependant marine spawning species (EUC II), principally Rhabdosargus holubi. During the closed periods of the estuary, total fish abundance and biomass displayed weak seasonal patterns. The breaching event and subsequent open period was associated with a decrease in the total abundances of fish in the littoral zone and channel of the estuary, reflecting the out-flow of estuarine biomass-rich water into the marine environment. The breaching event coincided with a shift in the community composition of the ichthyofauna, reflecting the recruitment of marine spawning species into the estuary. Numerical analysis identified two distinct spatial fish communities within the estuary, a community associated with the mouth region and one comprising the rest of the estuary. The absence of any further spatial patterns in the ichthyofaunal community structure within the Mpekweni Estuary appear to be ascribed to the virtual absence of horizontal patterns in physico-chemical and biological parameters recorded in the system. Cohort analyses were employed to determine possible recruitment events for selected estuarine and marine spawning species. The estuarine spawning species displayed continuous recruitment patterns throughout the study, which appeared to be unaffected by the breaching event. Conversely, the larger marine spawning species displayed multiple cohorts, indicating non-continuous recruitment. Subsequent retrospective analysis of cohorts for the different species identified summer recruitment peaks that coincided with the breaching event and open period. Minor recruitment of marine spawning species also occurred during overwash events. The recruitment of ichthyofauna into the estuary was quantified during three distinct hydrological events: overwash, out-flow phase immediately after breaching and tidal phase during the period when the mouth was open. Estimates of fish recruitment were highest during the outflow phase immediately after the estuary breached and declined as the estuary became tidally inundated with marine water. Although not as high as the outflow and tidal phases, recruitment was evident during overwash events. Results of the current study highlight the importance of both breaching and overwashing events in structuring the ichthyofaunal community composition in a medium-sized southern African temporarily open/closed estuary. These results are broadly in agreement with similar studies conducted both locally and in other regions of the world.
- Full Text:
The restoration of an alien-invaded riparian zone in grassy fynbos, South Africa
- Authors: Fourie, Saskia
- Date: 2013
- Subjects: Fynbos ecology -- South Africa Riparian ecology -- South Africa Riparian restoration -- South Africa Alien plants -- South Africa Invasive plants -- South Africa Endemic plants -- South Africa Plants -- Effect of fires on -- South Africa Soil seed banks -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4733 , http://hdl.handle.net/10962/d1003840
- Description: The most recent surveys in South Africa estimate that invasions are still increasing, despite substantial clearing efforts. Riparian systems in South Africa are particularly vulnerable to invasion by woody IAPs. This thesis addresses the restoration of alien‐invaded riparian systems, by investigating the factors that facilitate or constrain spontaneous recovery and influence the trajectories of succession. These factors include invasion history and management history, especially the use of fire. A seedling emergence approach was used to test the presence of a viable pre‐fire seedbank, and the effect of fire on the seed bank. The efficacy of some active restoration interventions was also tested, with the aim to return invasion‐resistant, indigenous vegetation with a structure and function representative of uninvaded sites. The findings of this study indicated the presence of a viable and persistent riparian soil seed bank, even after 30 years of intermtittent invasion as well as two fire cycles under invasion. It shows that the management practice of fell‐and‐burn resulted in high soil temperatures, and that this reduced the indigenous soil seed bank density, especially in the upper soil layer. Clear germination sequences and patterns of emergence over time for different species were observed during this study, with many species exhibiting delayed emergence relative to the timing of the fire event. It is proposed that manipulation of the season of fire could be used to selectively optimise the order of arrival and therefore superior recruitment of some species over others in the Eastern Cape fynbos, and thus alter the trajectories of recovery of vegetation towards a more desired state. Active restoration in the form of indigenous seed and plant additions resulted in a significantly higher indigenous cover after seven months, compared to a control (passive restoration) or restoring with grass. Indigenous cover and composition was also strongly influenced by lateral zonation, and some key guilds and species were missing or present in much lower densities compared to reference sites. Grass restoration significantly suppressed the regeneration of A. longifolia, as well as the regeneration of indigenous species. Biotic resistance can thus be achieved through restoration, and it could be a powerful tool in the management of IAPs, although the deliberate introduction of grass after clearing in fynbos also reduces biodiversity and could have unforeseen consequences to riparian function.
- Full Text:
- Authors: Fourie, Saskia
- Date: 2013
- Subjects: Fynbos ecology -- South Africa Riparian ecology -- South Africa Riparian restoration -- South Africa Alien plants -- South Africa Invasive plants -- South Africa Endemic plants -- South Africa Plants -- Effect of fires on -- South Africa Soil seed banks -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4733 , http://hdl.handle.net/10962/d1003840
- Description: The most recent surveys in South Africa estimate that invasions are still increasing, despite substantial clearing efforts. Riparian systems in South Africa are particularly vulnerable to invasion by woody IAPs. This thesis addresses the restoration of alien‐invaded riparian systems, by investigating the factors that facilitate or constrain spontaneous recovery and influence the trajectories of succession. These factors include invasion history and management history, especially the use of fire. A seedling emergence approach was used to test the presence of a viable pre‐fire seedbank, and the effect of fire on the seed bank. The efficacy of some active restoration interventions was also tested, with the aim to return invasion‐resistant, indigenous vegetation with a structure and function representative of uninvaded sites. The findings of this study indicated the presence of a viable and persistent riparian soil seed bank, even after 30 years of intermtittent invasion as well as two fire cycles under invasion. It shows that the management practice of fell‐and‐burn resulted in high soil temperatures, and that this reduced the indigenous soil seed bank density, especially in the upper soil layer. Clear germination sequences and patterns of emergence over time for different species were observed during this study, with many species exhibiting delayed emergence relative to the timing of the fire event. It is proposed that manipulation of the season of fire could be used to selectively optimise the order of arrival and therefore superior recruitment of some species over others in the Eastern Cape fynbos, and thus alter the trajectories of recovery of vegetation towards a more desired state. Active restoration in the form of indigenous seed and plant additions resulted in a significantly higher indigenous cover after seven months, compared to a control (passive restoration) or restoring with grass. Indigenous cover and composition was also strongly influenced by lateral zonation, and some key guilds and species were missing or present in much lower densities compared to reference sites. Grass restoration significantly suppressed the regeneration of A. longifolia, as well as the regeneration of indigenous species. Biotic resistance can thus be achieved through restoration, and it could be a powerful tool in the management of IAPs, although the deliberate introduction of grass after clearing in fynbos also reduces biodiversity and could have unforeseen consequences to riparian function.
- Full Text:
The screening and characterisation of compounds for modulators of heat shock protein (Hsp90) in a breast cancer cell model
- Authors: Moyo, Buhle
- Date: 2013 , 2013-07-18
- Subjects: Heat shock proteins Breast -- Cancer Breast -- Cancer -- Chemotherapy Breast -- Cancer -- Treatment Cancer cells Naphthoquinone PQQ (Biochemistry)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4060 , http://hdl.handle.net/10962/d1004129
- Description: Breast cancer is a leading cause of cancer death in Africa. Hsp90 has been identified as a target for anti-cancer treatments as its inhibition results in the disruption and ubiquitin–proteasome degradation of activated oncoproteins. Currently, there are no US Food and Drug Administration approved Hsp90 inhibitor drugs and existing Hsp90 inhibitors such as geldanamycin and novobiocin are hepatotoxic and display a low affinity for Hsp90, respectively. Therefore, there is a need for the development of Hsp90 inhibitors with improved inhibitory properties. In this study twelve natural compounds bearing a quinone nucleus were screened and characterised for the modulation of Hsp90. The compounds analysed formed three series; the sargaquinoic acid (SQA), naphthoquinone, and pyrroloiminoquinone alkaloid series. Certain compounds exhibited half maximal inhibitory concentrations of between 3.32 μM and 12.4 μM, while others showed no antiproliferative activity at concentrations of up to 500 μM in the MDA-MB-231 breast adenocarcinoma cell line. Immunofluorescence and Western analyses indicated that the modulation of Hsp90 and partner proteins by SQA was more similar to that of novobiocin. Isothermal titration calorimetry analyses suggested that SQA interacted with Hsp90β with a low affinity, and saturation-transfer difference nuclear magnetic resonance confirmed that this interaction with Hsp90β occurred through the methyl moiety bound to 1, 4 benzoquinone of SQA. Pulldown assays indicated SQA disrupted the association between Hsp90 and Hop dose-dependently, more similarly to novobiocin. Immunofluorescence and Western analyses performed on naphthoquinone and pyrroloiminoquinone alkaloid compounds indicated modulation of Hsp90 and Hsp90 partner proteins by the compounds. Naphthoquinone compounds were prioritised for analysis for binding to Hsp90β over the pyrroloiminoquinone alkaloid compounds. Lapachol interacted with Hsp90β with a low affinity however; this interaction was thought to be too weak to disrupt the association of Hsp90 and Hop. The remaining naphthoquinone compounds showed no interaction with Hsp90β, thus allowing the determination of a preliminary structure-activity relationship for these compounds. To the best of our knowledge, this is the first study to describe a systematic subcellular analysis of the effects of geldanamycin and novobiocin in comparison to sargaquinoic acid and compounds of the naphthoquinone and pyrroloquinoline scaffold on Hsp90 and its partner proteins. , Microsoft� Word 2010 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Authors: Moyo, Buhle
- Date: 2013 , 2013-07-18
- Subjects: Heat shock proteins Breast -- Cancer Breast -- Cancer -- Chemotherapy Breast -- Cancer -- Treatment Cancer cells Naphthoquinone PQQ (Biochemistry)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4060 , http://hdl.handle.net/10962/d1004129
- Description: Breast cancer is a leading cause of cancer death in Africa. Hsp90 has been identified as a target for anti-cancer treatments as its inhibition results in the disruption and ubiquitin–proteasome degradation of activated oncoproteins. Currently, there are no US Food and Drug Administration approved Hsp90 inhibitor drugs and existing Hsp90 inhibitors such as geldanamycin and novobiocin are hepatotoxic and display a low affinity for Hsp90, respectively. Therefore, there is a need for the development of Hsp90 inhibitors with improved inhibitory properties. In this study twelve natural compounds bearing a quinone nucleus were screened and characterised for the modulation of Hsp90. The compounds analysed formed three series; the sargaquinoic acid (SQA), naphthoquinone, and pyrroloiminoquinone alkaloid series. Certain compounds exhibited half maximal inhibitory concentrations of between 3.32 μM and 12.4 μM, while others showed no antiproliferative activity at concentrations of up to 500 μM in the MDA-MB-231 breast adenocarcinoma cell line. Immunofluorescence and Western analyses indicated that the modulation of Hsp90 and partner proteins by SQA was more similar to that of novobiocin. Isothermal titration calorimetry analyses suggested that SQA interacted with Hsp90β with a low affinity, and saturation-transfer difference nuclear magnetic resonance confirmed that this interaction with Hsp90β occurred through the methyl moiety bound to 1, 4 benzoquinone of SQA. Pulldown assays indicated SQA disrupted the association between Hsp90 and Hop dose-dependently, more similarly to novobiocin. Immunofluorescence and Western analyses performed on naphthoquinone and pyrroloiminoquinone alkaloid compounds indicated modulation of Hsp90 and Hsp90 partner proteins by the compounds. Naphthoquinone compounds were prioritised for analysis for binding to Hsp90β over the pyrroloiminoquinone alkaloid compounds. Lapachol interacted with Hsp90β with a low affinity however; this interaction was thought to be too weak to disrupt the association of Hsp90 and Hop. The remaining naphthoquinone compounds showed no interaction with Hsp90β, thus allowing the determination of a preliminary structure-activity relationship for these compounds. To the best of our knowledge, this is the first study to describe a systematic subcellular analysis of the effects of geldanamycin and novobiocin in comparison to sargaquinoic acid and compounds of the naphthoquinone and pyrroloquinoline scaffold on Hsp90 and its partner proteins. , Microsoft� Word 2010 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
The SKA's the limit : on the nature of faint radio sources
- Authors: McAlpine, Kim
- Date: 2013 , 2012-09-14
- Subjects: Radio telescopes -- South Africa Radio astronomy -- South Africa Square Kilometer Array (Spacecraft)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5504 , http://hdl.handle.net/10962/d1007271
- Description: From abstract: Within the next few years a large number of new and vastly more sensitive radio astronomy facilities are scheduled to come online. These new facilities will map large areas of the sky to unprecedented depths and transform radio astronomy into the leading technique for investigating the complex processes which govern the formation and evolution of galaxies. This thesis combines multi-wavelength techniques, highly relevant to future deep radio surveys, to study the evolution and properties of faint radio sources. , TeX , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Authors: McAlpine, Kim
- Date: 2013 , 2012-09-14
- Subjects: Radio telescopes -- South Africa Radio astronomy -- South Africa Square Kilometer Array (Spacecraft)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5504 , http://hdl.handle.net/10962/d1007271
- Description: From abstract: Within the next few years a large number of new and vastly more sensitive radio astronomy facilities are scheduled to come online. These new facilities will map large areas of the sky to unprecedented depths and transform radio astronomy into the leading technique for investigating the complex processes which govern the formation and evolution of galaxies. This thesis combines multi-wavelength techniques, highly relevant to future deep radio surveys, to study the evolution and properties of faint radio sources. , TeX , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
Towards a cost-efficient & standardised monitoring protocol for subtidal reef fish in the Agulhas ecoregion of South Africa
- Bernard, Anthony Thomas Firth
- Authors: Bernard, Anthony Thomas Firth
- Date: 2013
- Subjects: Reef fishes -- South Africa Reef fishes -- Monitoring--South Africa Fish stock assessment -- South Africa Coastal zone management -- South Africa Fish communities -- South Africa Marine parks and reserves -- South Africa Marine resources conservation -- South Africa Marine biodiversity conservation -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5585 , http://hdl.handle.net/10962/d1001674
- Description: Under the growing demand for marine fish resources, and the apparent and expected impacts of global climate change, there is a need to conduct long-term monitoring (LTM) to ensure effective management of resources and conservation of biodiversity. However LTM programmes often suffer from design deficiencies and fail to achieve their objectives. These deficiencies stem from the fact that insufficient consideration is afforded to the design phase, with programmes selecting methods that are not suitable to address the objectives, or are not cost-efficient, compromising the sustainability of the LTM. To facilitate the establishment of LTM programmes along the southern coast of South Africa, background research needed to be conducted to identify which methods were most appropriate for LTM of reef fish. This study presents a detailed field-based assessment of the suitability and cost-efficiency of monitoring methods for long-term monitoring of reef fish in the Agulhas Ecoregion of South Africa. The approach adopted to identify the method, or suite of methods most suited for LTM, involved (i) the selection of methods considered suitable for LTM, (ii) the individual assessment and optimisation of method performance, and (iii) the comparative assessment of the fish community sampled by the different methods. The most suited method(s) were then identified as those that provide the most comprehensive assessment of the fish community and had the highest cost-efficiency. The research was conducted between January 2008 and 2011 in the Tsitsikamma and Table Mountain National Park (TNP and TMNP, respectively) marine protected areas (MPAs) within the Agulhas Ecoregion. The methods selected included fish traps (FT), controlled angling (CA), underwater visual census (UVC), remote underwater video (RUV), baited RUV (BRUV) and remotely operated vehicles (ROV). The individual assessment and optimisation was conducted with the FT, UVC, RUV and BRUV methods. The assessment of the FT method aimed to identify the optimal soak time, and whether or not the size of the funnel entrance to the trap affected the catch. The results identified that larger funnel entrances caught more fish and soak times of 80 minutes produced the highest catches per unit effort. However the data were highly variable and the method detected few of the species typical of the region. Fish traps were also associated with high levels of mortality of fish post-release. The assessment of UVC strip transect method involved directly comparing the precision of data collected by researchers and volunteers using a novel double-observer technique (paired-transects). The results showed considerable error in both the volunteers and researchers data, however the researchers produced significantly higher precision data, compared to the volunteers. The distinction between researchers and volunteers was not evident in the data for the dominant species of fish. For all observers, the abundance of a species in the sample had a significant influence on its detectability, with locally scarce or rare species poorly detected. UVC was able to sample the majority of species typical of reefs in the region, however it appeared plagued by observer and detectability biases. The assessments of RUV and BRUV were conducted simultaneously which enabled the assessment of the effect of bait on the observed fish community. In addition the optimal deployment time for both methods to maximise species richness and abundance was determined. The results showed that BRUV, and to a lesser degree RUV, were able to effectively survey the reef fish community for the region with a 50 minute and 35 minute deployment time, respectively. Baited remote underwater video was especially good at detecting the invertebrate and generalist carnivores, and cartilaginous species. On the other hand, RUV was more effective at surveying the microinvertebrate carnivores. Remote underwater video was characterised by higher data variability, compared to BRUV, and was ultimately considered a less cost-efficient monitoring method. Comparative methods assessments were conducted during two field experiments with the FT, UVC and BRUV methods in the TMNP MPA, and the FT, CA, UVC, RUV, BRUV and ROV methods compared in the TNP MPA. The objectives of the comparison were to investigate differences in the fish communities observed with the different methods, and to determine the power of the data to detect an annual 10% growth in the fish populations over a period of five years. The results from the method comparison were in turn used to conduct the cost-benefit analysis to determine the efficiency of the different methods at achieving monitoring objectives requiring population data from multiple trophic and functional groups with the community, and from species of fisheries importance. The results indicated that FT, CA and ROV were ineffective at monitoring the reef fish community, although CA appeared to provide valuable data for the dominant fisheries species. Both CA and FT required minimal initial investment however, the variability in the data translated into high annual monitoring costs, as the required sampling effort was great. The ROV required the highest initial investment and was identified as the least cost-efficient method. Underwater visual census was able to adequately survey the bony fish within the community, however it did not detect the cartilaginous species. Underwater visual census required a large initial investment and was not cost-efficient, as a many samples were required to account for the variability in the data. Remote underwater video provided a comprehensive assessment of the reef fish community, however it too was associated with high levels of variability in the data, compared to BRUV, reducing its cost-efficiency. BRUV provided the most comprehensive assessment of the reef fish community and was associated with the highest cost-efficiency to address the community and fisheries species monitoring objectives. During the course of this research stereo-BRUV has gained considerable support as an effective reef fish monitoring method. Although not tested during this research, stereo-BRUV is preferred to BRUV as it provides accurate data on the size of fish. However, the initial investment of stereo-BRUV is over three times that required for the BRUV. Although it is recommended that a baited video technique be used for LTM in the Agulhas Ecoregion, the choice between BRUV and stereo-BRUV will depend on the specific objectives of the programme and the available budget at the implementing agency.
- Full Text:
- Authors: Bernard, Anthony Thomas Firth
- Date: 2013
- Subjects: Reef fishes -- South Africa Reef fishes -- Monitoring--South Africa Fish stock assessment -- South Africa Coastal zone management -- South Africa Fish communities -- South Africa Marine parks and reserves -- South Africa Marine resources conservation -- South Africa Marine biodiversity conservation -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5585 , http://hdl.handle.net/10962/d1001674
- Description: Under the growing demand for marine fish resources, and the apparent and expected impacts of global climate change, there is a need to conduct long-term monitoring (LTM) to ensure effective management of resources and conservation of biodiversity. However LTM programmes often suffer from design deficiencies and fail to achieve their objectives. These deficiencies stem from the fact that insufficient consideration is afforded to the design phase, with programmes selecting methods that are not suitable to address the objectives, or are not cost-efficient, compromising the sustainability of the LTM. To facilitate the establishment of LTM programmes along the southern coast of South Africa, background research needed to be conducted to identify which methods were most appropriate for LTM of reef fish. This study presents a detailed field-based assessment of the suitability and cost-efficiency of monitoring methods for long-term monitoring of reef fish in the Agulhas Ecoregion of South Africa. The approach adopted to identify the method, or suite of methods most suited for LTM, involved (i) the selection of methods considered suitable for LTM, (ii) the individual assessment and optimisation of method performance, and (iii) the comparative assessment of the fish community sampled by the different methods. The most suited method(s) were then identified as those that provide the most comprehensive assessment of the fish community and had the highest cost-efficiency. The research was conducted between January 2008 and 2011 in the Tsitsikamma and Table Mountain National Park (TNP and TMNP, respectively) marine protected areas (MPAs) within the Agulhas Ecoregion. The methods selected included fish traps (FT), controlled angling (CA), underwater visual census (UVC), remote underwater video (RUV), baited RUV (BRUV) and remotely operated vehicles (ROV). The individual assessment and optimisation was conducted with the FT, UVC, RUV and BRUV methods. The assessment of the FT method aimed to identify the optimal soak time, and whether or not the size of the funnel entrance to the trap affected the catch. The results identified that larger funnel entrances caught more fish and soak times of 80 minutes produced the highest catches per unit effort. However the data were highly variable and the method detected few of the species typical of the region. Fish traps were also associated with high levels of mortality of fish post-release. The assessment of UVC strip transect method involved directly comparing the precision of data collected by researchers and volunteers using a novel double-observer technique (paired-transects). The results showed considerable error in both the volunteers and researchers data, however the researchers produced significantly higher precision data, compared to the volunteers. The distinction between researchers and volunteers was not evident in the data for the dominant species of fish. For all observers, the abundance of a species in the sample had a significant influence on its detectability, with locally scarce or rare species poorly detected. UVC was able to sample the majority of species typical of reefs in the region, however it appeared plagued by observer and detectability biases. The assessments of RUV and BRUV were conducted simultaneously which enabled the assessment of the effect of bait on the observed fish community. In addition the optimal deployment time for both methods to maximise species richness and abundance was determined. The results showed that BRUV, and to a lesser degree RUV, were able to effectively survey the reef fish community for the region with a 50 minute and 35 minute deployment time, respectively. Baited remote underwater video was especially good at detecting the invertebrate and generalist carnivores, and cartilaginous species. On the other hand, RUV was more effective at surveying the microinvertebrate carnivores. Remote underwater video was characterised by higher data variability, compared to BRUV, and was ultimately considered a less cost-efficient monitoring method. Comparative methods assessments were conducted during two field experiments with the FT, UVC and BRUV methods in the TMNP MPA, and the FT, CA, UVC, RUV, BRUV and ROV methods compared in the TNP MPA. The objectives of the comparison were to investigate differences in the fish communities observed with the different methods, and to determine the power of the data to detect an annual 10% growth in the fish populations over a period of five years. The results from the method comparison were in turn used to conduct the cost-benefit analysis to determine the efficiency of the different methods at achieving monitoring objectives requiring population data from multiple trophic and functional groups with the community, and from species of fisheries importance. The results indicated that FT, CA and ROV were ineffective at monitoring the reef fish community, although CA appeared to provide valuable data for the dominant fisheries species. Both CA and FT required minimal initial investment however, the variability in the data translated into high annual monitoring costs, as the required sampling effort was great. The ROV required the highest initial investment and was identified as the least cost-efficient method. Underwater visual census was able to adequately survey the bony fish within the community, however it did not detect the cartilaginous species. Underwater visual census required a large initial investment and was not cost-efficient, as a many samples were required to account for the variability in the data. Remote underwater video provided a comprehensive assessment of the reef fish community, however it too was associated with high levels of variability in the data, compared to BRUV, reducing its cost-efficiency. BRUV provided the most comprehensive assessment of the reef fish community and was associated with the highest cost-efficiency to address the community and fisheries species monitoring objectives. During the course of this research stereo-BRUV has gained considerable support as an effective reef fish monitoring method. Although not tested during this research, stereo-BRUV is preferred to BRUV as it provides accurate data on the size of fish. However, the initial investment of stereo-BRUV is over three times that required for the BRUV. Although it is recommended that a baited video technique be used for LTM in the Agulhas Ecoregion, the choice between BRUV and stereo-BRUV will depend on the specific objectives of the programme and the available budget at the implementing agency.
- Full Text:
Towards the development of a mycoinsecticide to control white grubs (Coleoptera: Scarabaeidae) in South African sugarcane
- Authors: Goble, Tarryn Anne
- Date: 2013
- Subjects: Insecticides -- Environmental aspects Insecticides -- Toxicology Beetles -- South Africa -- KwaZulu-Natal Beetles -- Control -- South Africa -- KwaZulu-Natal Coleophoridae -- South Africa -- KwaZulu-Natal Scarabaeidae -- South Africa -- KwaZulu-Natal Sugarcane -- Diseases and pests -- South Africa -- KwaZulu-Natal Sugarcane -- Diseases and pests -- Control -- South Africa -- KwaZulu-Natal , Insecticides
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5586 , http://hdl.handle.net/10962/d1001748
- Description: In the KwaZulu-Natal (KZN) Midlands North region of South Africa, the importance and increased prevalence of endemic scarabaeids, particularly Hypopholis sommeri Burmeister and Schizonycha affinis Boheman (Coleoptera: Melolonthinae), as soil pests of sugarcane, and a need for their control was established. The development of a mycoinsecticide offers an environmentally friendly alternative to chemical insecticides. The identification of a diversity of white grub species, in two Scarabaeidae subfamilies, representing seven genera were collected in sugarcane as a pest complex. Hypopholis sommeri and S. affinis were the most prevalent species. The increased seasonal abundances, diversity and highly aggregated nature of these scarabaeid species in summer months, suggested that targeting and control strategies for these pests should be considered in this season. Increased rainfall, relative humidity and soil temperatures were linked to the increased occurrence of scarab adults and neonate grubs. Beauveria brongniartii (Saccardo) Petch epizootics were recorded at two sites in the KZN Midlands North on H. sommeri. Seventeen different fluorescently-labelled microsatellite PCR primers were used to target 78 isolates of Beauveria sp. DNA. Microsatellite data resolved two distinct clusters of Beauveria isolates which represented the Beauveria bassiana senso stricto (Balsamo) Vuillemin and B. brongniartii species groups. These groupings were supported by two gene regions, the nuclear ribosomal Internal Transcribed Spacer (ITS) and the nuclear B locus (Bloc) gene of which 23 exemplar Beauveria isolates were represented and sequenced. When microsatellite data were analysed, 26 haplotypes among 58 isolates of B. brongniartii were distinguished. Relatively low levels of genetic diversity were detected in B. brongniartii and isolates were shown to be closely related. There was no genetic differentiation between the two sites, Harden Heights and Canema in the KZN Midlands North. High gene flow from swarming H. sommeri beetles is the proposed mechanism for this lack of genetic differentiation between populations. Microsatellite analyses also showed that B. brongniartii conidia were being cycled from arboreal to subterranean habitats in the environment by H. sommeri beetles. This was the first record of this species of fungus causing epizootics on the larvae and adults of H. sommeri in South Africa. The virulence of 21 isolates of Beauveria brongniartii and two isolates of B. bassiana were evaluated against the adults and larvae of S. affinis and the adults of H. sommeri and Tenebrio molitor Linnaeus (Coleoptera: Tenebrionidae). Despite being closely-related, B. brongniartii isolates varied significantly in their virulence towards different hosts and highlighted the host specific nature of B. brongniartii towards S. affinis when compared to B. bassiana. Adults of S. affinis were significantly more susceptible to B. brongniartii isolates than the second (L2) or third instar (L3) grubs. The median lethal time (LT₅₀) of the most virulent B. brongniartii isolate (C13) against S. affinis adults was 7.8 days and probit analysis estimated a median lethal concentration (LC₅₀) of 4.4×10⁷ conidia/ml⁻¹. When L2 grubs were treated with a concentration of 1.0×10⁸ conidia/ml⁻¹, B. brongniartii isolates HHWG1, HHB39A and C17 caused mortality in L2 grubs within 18.4-19.8 days (LT₅₀). Beauveria brongniartii isolate HHWG1 was tested against the L3 grubs of S. affinis at four different concentrations. At the lowest concentration (1×10⁶ conidia/ml⁻¹), the LT₅₀ was 25.8 days, and at the highest concentration (1×10⁹ conidia/ml⁻¹) the LT₅₀ dropped to 15.1 days. The persistence of B. bassiana isolate 4222 formulated on rice and wheat bran and buried at eight field sites in the KZN Midlands North was evaluated by plating out a suspension of treated soil onto a selective medium. All eight field sites showed a significant decline in B. bassiana CFUs per gram of soil over time, with few conidia still present in the samples after a year. Greater declines in CFUs were observed at some sites but there were no significant differences observed in the persistence of conidia formulated on rice or wheat bran as carriers. Overall, poor persistence of B. bassiana isolate 4222 was attributed to suboptimum temperatures, rainfall, which rapidly degraded the nutritive carriers, attenuated fungal genotype and the action of antagonistic soil microbes. Growers’ perceptions of white grubs as pests and the feasibility of a mycoinsecticide market were evaluated by means of a semi-structured questionnaire. The study showed that the reduced feasibility of application, general lack of potential demand for a product, high cost factors and most importantly, the lack of pest perception, were factors which would negatively affect the adoption of a granular mycoinsecticide. Growers however exhibited a positive attitude towards mycoinsecticides, and showed all the relevant attributes for successful technology adoption. It is recommended that because B. brongniartii epizootics were recorded on target pests which indicated good host specificity, dispersal ability and persistence of the fungus in the intended environment of application; that a mycoinsecticide based on this fungal species be developed. What will likely increase adoption and success of a mycoinsecticide is collaboration between various industries partners to increases market potential in other crops such as Acacia mearnsii De Wild (Fabales: Fabaceae).
- Full Text:
- Authors: Goble, Tarryn Anne
- Date: 2013
- Subjects: Insecticides -- Environmental aspects Insecticides -- Toxicology Beetles -- South Africa -- KwaZulu-Natal Beetles -- Control -- South Africa -- KwaZulu-Natal Coleophoridae -- South Africa -- KwaZulu-Natal Scarabaeidae -- South Africa -- KwaZulu-Natal Sugarcane -- Diseases and pests -- South Africa -- KwaZulu-Natal Sugarcane -- Diseases and pests -- Control -- South Africa -- KwaZulu-Natal , Insecticides
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5586 , http://hdl.handle.net/10962/d1001748
- Description: In the KwaZulu-Natal (KZN) Midlands North region of South Africa, the importance and increased prevalence of endemic scarabaeids, particularly Hypopholis sommeri Burmeister and Schizonycha affinis Boheman (Coleoptera: Melolonthinae), as soil pests of sugarcane, and a need for their control was established. The development of a mycoinsecticide offers an environmentally friendly alternative to chemical insecticides. The identification of a diversity of white grub species, in two Scarabaeidae subfamilies, representing seven genera were collected in sugarcane as a pest complex. Hypopholis sommeri and S. affinis were the most prevalent species. The increased seasonal abundances, diversity and highly aggregated nature of these scarabaeid species in summer months, suggested that targeting and control strategies for these pests should be considered in this season. Increased rainfall, relative humidity and soil temperatures were linked to the increased occurrence of scarab adults and neonate grubs. Beauveria brongniartii (Saccardo) Petch epizootics were recorded at two sites in the KZN Midlands North on H. sommeri. Seventeen different fluorescently-labelled microsatellite PCR primers were used to target 78 isolates of Beauveria sp. DNA. Microsatellite data resolved two distinct clusters of Beauveria isolates which represented the Beauveria bassiana senso stricto (Balsamo) Vuillemin and B. brongniartii species groups. These groupings were supported by two gene regions, the nuclear ribosomal Internal Transcribed Spacer (ITS) and the nuclear B locus (Bloc) gene of which 23 exemplar Beauveria isolates were represented and sequenced. When microsatellite data were analysed, 26 haplotypes among 58 isolates of B. brongniartii were distinguished. Relatively low levels of genetic diversity were detected in B. brongniartii and isolates were shown to be closely related. There was no genetic differentiation between the two sites, Harden Heights and Canema in the KZN Midlands North. High gene flow from swarming H. sommeri beetles is the proposed mechanism for this lack of genetic differentiation between populations. Microsatellite analyses also showed that B. brongniartii conidia were being cycled from arboreal to subterranean habitats in the environment by H. sommeri beetles. This was the first record of this species of fungus causing epizootics on the larvae and adults of H. sommeri in South Africa. The virulence of 21 isolates of Beauveria brongniartii and two isolates of B. bassiana were evaluated against the adults and larvae of S. affinis and the adults of H. sommeri and Tenebrio molitor Linnaeus (Coleoptera: Tenebrionidae). Despite being closely-related, B. brongniartii isolates varied significantly in their virulence towards different hosts and highlighted the host specific nature of B. brongniartii towards S. affinis when compared to B. bassiana. Adults of S. affinis were significantly more susceptible to B. brongniartii isolates than the second (L2) or third instar (L3) grubs. The median lethal time (LT₅₀) of the most virulent B. brongniartii isolate (C13) against S. affinis adults was 7.8 days and probit analysis estimated a median lethal concentration (LC₅₀) of 4.4×10⁷ conidia/ml⁻¹. When L2 grubs were treated with a concentration of 1.0×10⁸ conidia/ml⁻¹, B. brongniartii isolates HHWG1, HHB39A and C17 caused mortality in L2 grubs within 18.4-19.8 days (LT₅₀). Beauveria brongniartii isolate HHWG1 was tested against the L3 grubs of S. affinis at four different concentrations. At the lowest concentration (1×10⁶ conidia/ml⁻¹), the LT₅₀ was 25.8 days, and at the highest concentration (1×10⁹ conidia/ml⁻¹) the LT₅₀ dropped to 15.1 days. The persistence of B. bassiana isolate 4222 formulated on rice and wheat bran and buried at eight field sites in the KZN Midlands North was evaluated by plating out a suspension of treated soil onto a selective medium. All eight field sites showed a significant decline in B. bassiana CFUs per gram of soil over time, with few conidia still present in the samples after a year. Greater declines in CFUs were observed at some sites but there were no significant differences observed in the persistence of conidia formulated on rice or wheat bran as carriers. Overall, poor persistence of B. bassiana isolate 4222 was attributed to suboptimum temperatures, rainfall, which rapidly degraded the nutritive carriers, attenuated fungal genotype and the action of antagonistic soil microbes. Growers’ perceptions of white grubs as pests and the feasibility of a mycoinsecticide market were evaluated by means of a semi-structured questionnaire. The study showed that the reduced feasibility of application, general lack of potential demand for a product, high cost factors and most importantly, the lack of pest perception, were factors which would negatively affect the adoption of a granular mycoinsecticide. Growers however exhibited a positive attitude towards mycoinsecticides, and showed all the relevant attributes for successful technology adoption. It is recommended that because B. brongniartii epizootics were recorded on target pests which indicated good host specificity, dispersal ability and persistence of the fungus in the intended environment of application; that a mycoinsecticide based on this fungal species be developed. What will likely increase adoption and success of a mycoinsecticide is collaboration between various industries partners to increases market potential in other crops such as Acacia mearnsii De Wild (Fabales: Fabaceae).
- Full Text:
Use of bioindicators and biomarkers to assess aquatic environmental contamination in selected urban wetlands in Uganda
- Authors: Naigaga, Irene
- Date: 2013
- Subjects: Indicators (Biology) Biochemical markers Environmental monitoring -- Uganda Water quality biological assessment -- Uganda Water -- Pollution -- Uganda Wetlands -- Monitoring -- Uganda Wetland management -- Uganda Aquatic resources -- Uganda Aquatic resources conservation -- Uganda Aquatic resources -- Management -- Uganda Fishes -- Histopathaology -- Uganda Urban ecology (Biology) -- Uganda
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5198 , http://hdl.handle.net/10962/d1002603
- Description: Pollution of aquatic resources in Uganda is on the increase and the trends are expected to increase with increase in population size and urbanisation. Assessment and mitigation of the environmental impacts on water quality and biodiversity have now become necessary. The aim of the study was to integrate invertebrate and fish as bioindicators and fish histopathology as a biomarker in the assessment of water quality deterioration in urban wetlands in Uganda. The integration harnesses the advantages and counteracts the shortcomings of each method and thus builds a more robust diagnostic tool that gives a better view of the impacts to the entire ecosystem. Four endpoints which included, physicochemical variables, benthic macroinvertebrate bioindicators, fish bioindicators and fish histopathology biomarkers were compared between varied effluent-impacted wetlands (Murchison Bay in Kampala, and Kirinya, Masese and Winday Bay in Jinja) and a non-impacted reference wetland (Lwanika in Mayuge). Results from the effluent-impacted sites differed from the less impacted reference site. The two sampling locations at Murchison Bay (inshore and offshore) and one sampling location at Kirinya (inshore), that were highly impacted with urban effluent, showed elevated nutrient levels, low pH, dissolved oxygen and secchi depth readings. This corresponded with low invertebrate taxa and fish species diversity and richness; and severe histopathological responses in liver, gonads and gills of O. niloticus. Sensitive taxa such as ephemeroptera and trichoptera were completely absent while pollution tolerant taxa Chironomus sp, Corbicula and Oligochaeta were present. Also notable was the absence of many native haplochromines and presence of mainly Brycinus sadleri, Oreochromis niloticus and leucostictus. The organs manifested high prevalence of severe inflammatory and regressive changes and higher organ indices that fell within the pathological category. These sites were consistently classified as highly polluted under the four endpoints. The reference site was classified as least polluted while Masese and Winday Bay were moderately polluted. Results suggested that the approach of using invertebrate and fish as bioindicators and the fish histopathology as a biomarker, in relation to water quality physicochemical variables was a useful tool in highlighting the spatial differences in environmental quality.
- Full Text:
- Authors: Naigaga, Irene
- Date: 2013
- Subjects: Indicators (Biology) Biochemical markers Environmental monitoring -- Uganda Water quality biological assessment -- Uganda Water -- Pollution -- Uganda Wetlands -- Monitoring -- Uganda Wetland management -- Uganda Aquatic resources -- Uganda Aquatic resources conservation -- Uganda Aquatic resources -- Management -- Uganda Fishes -- Histopathaology -- Uganda Urban ecology (Biology) -- Uganda
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5198 , http://hdl.handle.net/10962/d1002603
- Description: Pollution of aquatic resources in Uganda is on the increase and the trends are expected to increase with increase in population size and urbanisation. Assessment and mitigation of the environmental impacts on water quality and biodiversity have now become necessary. The aim of the study was to integrate invertebrate and fish as bioindicators and fish histopathology as a biomarker in the assessment of water quality deterioration in urban wetlands in Uganda. The integration harnesses the advantages and counteracts the shortcomings of each method and thus builds a more robust diagnostic tool that gives a better view of the impacts to the entire ecosystem. Four endpoints which included, physicochemical variables, benthic macroinvertebrate bioindicators, fish bioindicators and fish histopathology biomarkers were compared between varied effluent-impacted wetlands (Murchison Bay in Kampala, and Kirinya, Masese and Winday Bay in Jinja) and a non-impacted reference wetland (Lwanika in Mayuge). Results from the effluent-impacted sites differed from the less impacted reference site. The two sampling locations at Murchison Bay (inshore and offshore) and one sampling location at Kirinya (inshore), that were highly impacted with urban effluent, showed elevated nutrient levels, low pH, dissolved oxygen and secchi depth readings. This corresponded with low invertebrate taxa and fish species diversity and richness; and severe histopathological responses in liver, gonads and gills of O. niloticus. Sensitive taxa such as ephemeroptera and trichoptera were completely absent while pollution tolerant taxa Chironomus sp, Corbicula and Oligochaeta were present. Also notable was the absence of many native haplochromines and presence of mainly Brycinus sadleri, Oreochromis niloticus and leucostictus. The organs manifested high prevalence of severe inflammatory and regressive changes and higher organ indices that fell within the pathological category. These sites were consistently classified as highly polluted under the four endpoints. The reference site was classified as least polluted while Masese and Winday Bay were moderately polluted. Results suggested that the approach of using invertebrate and fish as bioindicators and the fish histopathology as a biomarker, in relation to water quality physicochemical variables was a useful tool in highlighting the spatial differences in environmental quality.
- Full Text: