Mechanisms generating biological diversity in the genus Platypleura Amyot & Serville, 1843 (Hemiptera: Cicadidae) in southern Africa: implications of a preliminary molecular phylogeny
- Villet, Martin H, Barker, Nigel P, Lunt, N
- Authors: Villet, Martin H , Barker, Nigel P , Lunt, N
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6554 , http://hdl.handle.net/10962/d1006012
- Description: Truly understanding biological diversity requires a move from descriptive studies to mechanistic interpretations based on comparative biology and a thorough recognition of the natural history of the focal organisms. A useful step in such comparative studies is the generation of a phylogeny, so that one can assess the phylogenetic independence of the focal taxa and trace the evolutionary significance of their characteristics. As a preliminary to such studies on the platypleurine cicada genus Platypleura, we sequenced 498 bases of the cytochrome oxidase I (COI) gene from thirteen African species. To circumvent problems with outgroup selection, we also included sequences from representatives of the platypleurine genera Brevisiana, Capcicada, Munza, Oxypleura, Severiana, and Systophlochius, all of the subtribe Platypleuriti, and two species of the genus Ugada, of the subtribe Hainanosemiiti. The resulting phylogenies support the synonymization of the monotypic genus Systophlochius with the widespread, speciose genus Platypleura; confirm the placement of Platypleura sp. 7 in that genus; and confirm the independence of Capcicada and Platypleura. Although the preliminary phylogeny lacks strong support at many nodes, it suggests that three radiations of Platypleura have occurred in southern Africa and that there was progressive southward speciation of these radiations. A novel modification of the ancestral area analysis further suggests that the group has an ancestral association with acacias but there were five independent speciation events associated with host- switching. These insights can be summarized by a general hypothesis that the mechanisms underlying platypleurine biodiversity in southern Africa involve two ancient vicariance events and subsequent speciation by vicariance, switching of plant associations, and changes of habitat preferences. We offer this example to illustrate how analysis of preliminary data can help to generate hypotheticodeductive research hypotheses, to provoke interest in testing these hypotheses, and to illustrate the utility of phylogenies beyond systematics.
- Full Text:
- Date Issued: 2004
- Authors: Villet, Martin H , Barker, Nigel P , Lunt, N
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6554 , http://hdl.handle.net/10962/d1006012
- Description: Truly understanding biological diversity requires a move from descriptive studies to mechanistic interpretations based on comparative biology and a thorough recognition of the natural history of the focal organisms. A useful step in such comparative studies is the generation of a phylogeny, so that one can assess the phylogenetic independence of the focal taxa and trace the evolutionary significance of their characteristics. As a preliminary to such studies on the platypleurine cicada genus Platypleura, we sequenced 498 bases of the cytochrome oxidase I (COI) gene from thirteen African species. To circumvent problems with outgroup selection, we also included sequences from representatives of the platypleurine genera Brevisiana, Capcicada, Munza, Oxypleura, Severiana, and Systophlochius, all of the subtribe Platypleuriti, and two species of the genus Ugada, of the subtribe Hainanosemiiti. The resulting phylogenies support the synonymization of the monotypic genus Systophlochius with the widespread, speciose genus Platypleura; confirm the placement of Platypleura sp. 7 in that genus; and confirm the independence of Capcicada and Platypleura. Although the preliminary phylogeny lacks strong support at many nodes, it suggests that three radiations of Platypleura have occurred in southern Africa and that there was progressive southward speciation of these radiations. A novel modification of the ancestral area analysis further suggests that the group has an ancestral association with acacias but there were five independent speciation events associated with host- switching. These insights can be summarized by a general hypothesis that the mechanisms underlying platypleurine biodiversity in southern Africa involve two ancient vicariance events and subsequent speciation by vicariance, switching of plant associations, and changes of habitat preferences. We offer this example to illustrate how analysis of preliminary data can help to generate hypotheticodeductive research hypotheses, to provoke interest in testing these hypotheses, and to illustrate the utility of phylogenies beyond systematics.
- Full Text:
- Date Issued: 2004
Phylogeny, biogeography, and the evolution of life-history traits in Leucadendron (Proteaceae)
- Barker, Nigel P, Vanderpoorten, Alain, Morton, Cynthia M, Rourke, John P
- Authors: Barker, Nigel P , Vanderpoorten, Alain , Morton, Cynthia M , Rourke, John P
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6496 , http://hdl.handle.net/10962/d1004491
- Description: Leucadendron is a moderately large genus of Proteaceae almost entirely restricted to the Cape Floristic Region of southern Africa. The genus is unusual in being dioecious and sexually dimorphic. ITS sequence data were obtained from 62 of the 96 currently recognized taxa (85 species and 11 subspecies). Phylogenetic analyses were conducted under Maximum Likelihood and parsimony and resolved nine groups of species with varying degrees of bootstrap support, but relationships between these groups are largely unsupported. The phylogeny conflicts with the current taxonomic arrangement, which is based mainly on fruit morphology. The two sections of the genus, Alatosperma and Leucadendron, and several subsections within these sections, are resolved as non-monophyletic. This means that taxonomically important characters (such as fruit shape) have evolved multiple times, as the species with nutlike fruit (resolved into two of the nine groups) appear to have evolved independently from ancestors with winged fruit. Based on the topology obtained, the life history traits of anemophily, myrmechochory, and re-sprouting have also originated multiple times. Dispersal–Vicariance (DIVA) analysis suggests that the genus had an ancestral area in the Karoo Mountain and Southeastern phytogeographic centres of endemism in the southwestern Cape. , Elsevier
- Full Text:
- Date Issued: 2004
- Authors: Barker, Nigel P , Vanderpoorten, Alain , Morton, Cynthia M , Rourke, John P
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6496 , http://hdl.handle.net/10962/d1004491
- Description: Leucadendron is a moderately large genus of Proteaceae almost entirely restricted to the Cape Floristic Region of southern Africa. The genus is unusual in being dioecious and sexually dimorphic. ITS sequence data were obtained from 62 of the 96 currently recognized taxa (85 species and 11 subspecies). Phylogenetic analyses were conducted under Maximum Likelihood and parsimony and resolved nine groups of species with varying degrees of bootstrap support, but relationships between these groups are largely unsupported. The phylogeny conflicts with the current taxonomic arrangement, which is based mainly on fruit morphology. The two sections of the genus, Alatosperma and Leucadendron, and several subsections within these sections, are resolved as non-monophyletic. This means that taxonomically important characters (such as fruit shape) have evolved multiple times, as the species with nutlike fruit (resolved into two of the nine groups) appear to have evolved independently from ancestors with winged fruit. Based on the topology obtained, the life history traits of anemophily, myrmechochory, and re-sprouting have also originated multiple times. Dispersal–Vicariance (DIVA) analysis suggests that the genus had an ancestral area in the Karoo Mountain and Southeastern phytogeographic centres of endemism in the southwestern Cape. , Elsevier
- Full Text:
- Date Issued: 2004
Pollination biology of Bergeranthus multiceps (Aizoaceae) with preliminary observations of repeated flower opening and closure
- Peter, Craig I, Dold, Anthony P, Barker, Nigel P, Ripley, Bradford S
- Authors: Peter, Craig I , Dold, Anthony P , Barker, Nigel P , Ripley, Bradford S
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6529 , http://hdl.handle.net/10962/d1005970
- Description: Little is known about pollination of the Aizoaceae (Mesembryanthemaceae). There are sparse reports of generalist pollination in the family by a variety of insects (predominantly bees). Furthermore, most species are self-incompatible in cultivation. In this study, observations were made on two populations of Bergeranthus multiceps (Salm-Dyck) Schwantes growing in the Eastern Cape province of South Africa. Insects visiting the flowers were collected and examined for pollen. While 79 individual insects (in 24 genera representing 14 families and four orders) were collected visiting the flowers, the majority (43 individuals) were female Allodapula variegata bees (Apidae, subfamily Xylocopinae, tribe Allodapini)collecting pollen. All other bee visitors were also female, suggesting pollen collection as the primary activity at the flowers. The protandrous flowers were found to be self-incompatible, pointing to the importance of bee-mediated xenogamy in this species. The flowers of B. multiceps are bright yellow in the human visual spectrum. In addition, the petals of this species reflect ultraviolet light. In contrast, the yellow anthers absorb UV. Flower opening and closing is common in the Aizoaceae. Interestingly, in B. multiceps flowers open at about 15:30 and remain open for approximately three hours before closing again in the late afternoon. These afternoon flower opening events were found to be closely correlated to ambient temperatures above 23°C, relative humidity lower than 50% and vapour pressure deficit below 1.05 kPa measured from as early as 09:00 on the days when flowers opened.
- Full Text:
- Date Issued: 2004
- Authors: Peter, Craig I , Dold, Anthony P , Barker, Nigel P , Ripley, Bradford S
- Date: 2004
- Language: English
- Type: Article
- Identifier: vital:6529 , http://hdl.handle.net/10962/d1005970
- Description: Little is known about pollination of the Aizoaceae (Mesembryanthemaceae). There are sparse reports of generalist pollination in the family by a variety of insects (predominantly bees). Furthermore, most species are self-incompatible in cultivation. In this study, observations were made on two populations of Bergeranthus multiceps (Salm-Dyck) Schwantes growing in the Eastern Cape province of South Africa. Insects visiting the flowers were collected and examined for pollen. While 79 individual insects (in 24 genera representing 14 families and four orders) were collected visiting the flowers, the majority (43 individuals) were female Allodapula variegata bees (Apidae, subfamily Xylocopinae, tribe Allodapini)collecting pollen. All other bee visitors were also female, suggesting pollen collection as the primary activity at the flowers. The protandrous flowers were found to be self-incompatible, pointing to the importance of bee-mediated xenogamy in this species. The flowers of B. multiceps are bright yellow in the human visual spectrum. In addition, the petals of this species reflect ultraviolet light. In contrast, the yellow anthers absorb UV. Flower opening and closing is common in the Aizoaceae. Interestingly, in B. multiceps flowers open at about 15:30 and remain open for approximately three hours before closing again in the late afternoon. These afternoon flower opening events were found to be closely correlated to ambient temperatures above 23°C, relative humidity lower than 50% and vapour pressure deficit below 1.05 kPa measured from as early as 09:00 on the days when flowers opened.
- Full Text:
- Date Issued: 2004
Phylogenetics of advanced snakes (Caenophidia) based on four mitochondrial genes
- Kelly, Christopher M R, Barker, Nigel P, Villet, Martin H
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H
- Date: 2003
- Language: English
- Type: Article
- Identifier: vital:6960 , http://hdl.handle.net/10962/d1012005
- Description: Phylogenetic relationships among advanced snakes ( Acrochordus + Colubroidea = Caenophidia) and the position of the genus Acrochordus relative to colubroid taxa are contentious. These concerns were investigated by phylogenetic analysis of fragments from four mitochondrial genes representing 62 caenophidian genera and 5 noncaenophidian taxa. Four methods of phylogeny reconstruction were applied: matrix representation with parsimony (MRP) supertree consensus, maximum parsimony, maximum likelihood, and Bayesian analysis. Because of incomplete sampling, extensive missing data were inherent in this study. Analyses of individual genes retrieved roughly the same clades, but branching order varied greatly between gene trees, and nodal support was poor. Trees generated from combined data sets using maximum parsimony, maximum likelihood, and Bayesian analysis had medium to low nodal support but were largely congruent with each other and with MRP supertrees. Conclusions about caenophidian relationships were based on these combined analyses. The Xenoderminae, Viperidae, Pareatinae, Psammophiinae, Pseudoxyrophiinae, Homalopsinae, Natricinae, Xenodontinae, and Colubrinae (redefined) emerged as monophyletic, whereas Lamprophiinae, Atractaspididae, and Elapidae were not in one or more topologies. A clade comprising Acrochordus and Xenoderminae branched closest to the root, and when Acrochordus was assessed in relation to a colubroid subsample and all five noncaenophidians, it remained associated with the Colubroidea. Thus, Acrochordus + Xenoderminae appears to be the sister group to the Colubroidea, and Xenoderminae should be excluded from Colubroidea. Within Colubroidea, Viperidae was the most basal clade. Other relationships appearing in all final topologies were (1) a clade comprising Psammophiinae, Lamprophiinae, Atractaspididae, Pseudoxyrophiinae, and Elapidae, within which the latter four taxa formed a subclade, and (2) a clade comprising Colubrinae, Natricinae, and Xenodontinae, within which the latter two taxa formed a subclade. Pareatinae and Homalopsinae were the most unstable clades.
- Full Text:
- Date Issued: 2003
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H
- Date: 2003
- Language: English
- Type: Article
- Identifier: vital:6960 , http://hdl.handle.net/10962/d1012005
- Description: Phylogenetic relationships among advanced snakes ( Acrochordus + Colubroidea = Caenophidia) and the position of the genus Acrochordus relative to colubroid taxa are contentious. These concerns were investigated by phylogenetic analysis of fragments from four mitochondrial genes representing 62 caenophidian genera and 5 noncaenophidian taxa. Four methods of phylogeny reconstruction were applied: matrix representation with parsimony (MRP) supertree consensus, maximum parsimony, maximum likelihood, and Bayesian analysis. Because of incomplete sampling, extensive missing data were inherent in this study. Analyses of individual genes retrieved roughly the same clades, but branching order varied greatly between gene trees, and nodal support was poor. Trees generated from combined data sets using maximum parsimony, maximum likelihood, and Bayesian analysis had medium to low nodal support but were largely congruent with each other and with MRP supertrees. Conclusions about caenophidian relationships were based on these combined analyses. The Xenoderminae, Viperidae, Pareatinae, Psammophiinae, Pseudoxyrophiinae, Homalopsinae, Natricinae, Xenodontinae, and Colubrinae (redefined) emerged as monophyletic, whereas Lamprophiinae, Atractaspididae, and Elapidae were not in one or more topologies. A clade comprising Acrochordus and Xenoderminae branched closest to the root, and when Acrochordus was assessed in relation to a colubroid subsample and all five noncaenophidians, it remained associated with the Colubroidea. Thus, Acrochordus + Xenoderminae appears to be the sister group to the Colubroidea, and Xenoderminae should be excluded from Colubroidea. Within Colubroidea, Viperidae was the most basal clade. Other relationships appearing in all final topologies were (1) a clade comprising Psammophiinae, Lamprophiinae, Atractaspididae, Pseudoxyrophiinae, and Elapidae, within which the latter four taxa formed a subclade, and (2) a clade comprising Colubrinae, Natricinae, and Xenodontinae, within which the latter two taxa formed a subclade. Pareatinae and Homalopsinae were the most unstable clades.
- Full Text:
- Date Issued: 2003