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A Change Project story: learning and caring for South Africa’s rivers

- Chetty, Preven

Authors: Chetty, Preven
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/391060 , vital:68613 , xlink:href="https://eeasa.org.za/wp-content/uploads/2023/02/Final-EEASA-Bulletin-20212022-Final.pdf"
Description: Water quality and scarcity is a major concern in Southern Africa and globally especially as the threat of climate change looms even closer. The current drought in South Africa and worsening rainfall has exposed the brittle nature of this country’s resilience to water shortages. Compounded to this is the fact that most rivers in South Africa are not adequately cared for and are under tremendous strain. Everyone who depends on these rivers whether directly or indirectly will soon be entering a new era where water will no longer be a ubiquitous commodity.
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Date Issued: 2022

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A laminated, emergentist view of skills ecosystems

- Ramsarup, Presha, Lotz-Sisitka, Heila, McGrath, Simon

Authors: Ramsarup, Presha , Lotz-Sisitka, Heila , McGrath, Simon
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/370074 , vital:66295 , xlink:href="https://doi.org/10.1080/14767430.2022.2145768"
Description: In this paper we present a model of vocational education and training (VET) that can be used to guide decisions relating to VET in Africa today. This model takes the critique of the neoclassical, neoliberal model of VET as its starting point. Guided by Bhaskar's Critical Naturalism, we use immanent critique to consider the adequacy of proposed alternatives to the neoclassical approach, such as: the heterodox approach, which foregrounds explanations based on human capital and political economy; and Hodgson and Spours' social ecosystem model, which addresses some of the limitations of the heterodox account by including, social and ecosystem elements. Finally, we offer a version of the social ecosystem model that, according to our analysis, explains more of the empirical evidence than previous models. Our version of the social ecosystem model differs from earlier versions in terms of its explicit reference to the critical realist ideas of position- practices and emergence.
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Date Issued: 2022

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A multiscale ONIOM study of the buckminsterfullerene (C60) Diels–Alder reaction: from model design to reaction path analysis

- Isamura, Bienfait K, Lobb, Kevin A

Authors: Isamura, Bienfait K , Lobb, Kevin A
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/452517 , vital:75140 , xlink:href=" https://link.springer.com/article/10.1007/s00894-022-05319-0"
Description: The hybrid ONIOM (Our own N-layered Integrated molecular Orbital and molecular Mechanics) formalism is employed to investigate the Diels–Alder reaction of the buckminsterfullerene C60. Our computa-tions suggest that the ONIOM2(M06-2X/6-31G(d): SVWN/STO3G) mod-el, enclosing both the diene and the pyracyclene fragment of C60 in the higher-layer, provides a reasonable trade-of between accuracy and computational cost as it comes to predicting reaction energetics. Moreover, the frontier molecular orbital (FMO) theory and activation strain model (ASM) are jointly relied on to rationalize the efect of –OH and –CN substituents on the activation barrier of this reaction. Finally, reaction paths are scrutinized to get insight into the various forces un-derpinning the process of cycloadduct formation.
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Date Issued: 2022

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A simple quinoline-thiophene Schiff base turn-off chemosensor for Hg2+ detection

- Musikavanhu, Brian, Muthusamy, Selvaraj, Zhu, Dongwei, Xue, Zhaoli, Yu, Qian, Chivumba, Choonzo N, Mack, John, Nyokong, Tebello, Wang, Shengjun, Zhao, Long

Authors: Musikavanhu, Brian , Muthusamy, Selvaraj , Zhu, Dongwei , Xue, Zhaoli , Yu, Qian , Chivumba, Choonzo N , Mack, John , Nyokong, Tebello , Wang, Shengjun , Zhao, Long
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/230362 , vital:49771 , xlink:href="https://doi.org/10.1016/j.saa.2021.120338"
Description: A new Schiff base probe (QT) consisting of 8-aminoquinoline (Q) and thiophene-2-carboxaldehyde (T) moieties has been synthesized. QT undergoes chelation-enhanced fluorescence quenching when exposed to Hg2+ due to coordination by the sulfur and nitrogen atoms of QT thus forming a facile “turn-off” sensor. The formation of the chelation complex was confirmed by UV–visible absorption and emission spectral measurements, 1H NMR titration and density functional theory calculations. These studies revealed that the probe exhibits high selectivity and sensitivity towards Hg2+ in the presence of other common metal ions. A low detection limit of 23.4 nM was determined and a Job plot confirmed a 2:1 stoichiometry between QT and Hg2+. The potential utility of QT as a sensor for Hg2+ ions in human HeLa cells was determined by confocal fluorescence microscopy, and its suitability for use in the field with environmental samples was tested with Whatman filter paper strips.
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Date Issued: 2022

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A Sn (iv) porphyrin with mitochondria targeting properties for enhanced photodynamic activity against MCF-7 cells

- Babu, Balaji, Mack, John, Nyokong, Tebello

Authors: Babu, Balaji , Mack, John , Nyokong, Tebello
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/230897 , vital:49829 , xlink:href="https://doi.org/10.1039/D2NJ00350C"
Description: Two readily synthesized Sn(IV) porphyrins (SnP, SnPH) have been prepared with and without the cationic triphenylphosphonium moiety (TPP+), which have high singlet oxygen quantum yields (ca. 0.72) and long triplet state lifetimes. The Sn(IV) porphyrin with a TPP+ moiety (SnPH) exhibits favorable photodynamic activity against MCF-7 cells with IC50 values of 2.9 μM. SnPH exhibits higher cellular uptake than SnP in MCF-7 cells. A Rhodamine 123 (Rh123) assay showed that SnPH targets mitochondria and induces apoptosis by generating reactive oxygen species. The results demonstrate that this structural modification strategy merits further in-depth study.
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Date Issued: 2022

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Adsorption of antibiotic-resistant bacteria and their cell-free deoxyribonucleic acid harbouring resistance genes in drinking water with metal oxides

- Tobechukwu, Anthony Eric

Authors: Tobechukwu, Anthony Eric
Date: 2022
Subjects: Metallic oxides , DNA -- Synthesis , Drinking water
Language: English
Type: Doctoral theses , text
Identifier: http://hdl.handle.net/10353/27787 , vital:69494
Description: Access to cleaner water is essential to human health. The incidence of Antibiotic Resistant Bacteria ARB in drinking water and subsequent proliferation of Antibiotic Resistance Genes ARGs in drinking water is a concern for public health. The free DNA cassette harboring antibiotic resistance gene in drinking water has been linked with impaired public health. The ARGs allows bacteria to develop resistance towards antibiotics while ARB render antibiotics ineffective. Existing drinking water treatment technologies eg adsorption, ozonation and chlorination, have shown different levels of potency in the removal of conventional water pollutant. These technologies, which operating principles is based on oxidation or mass transfer, have been explored to gained an insight into their efficiency in the removal of ARB ARGs in water treatment. In general, methods that functions by mass transfer of the ARB ARGs is more effectively than bacteria oxidation. Consequently, adsorption technology was chosen using common metal oxide adsorbents. The adsorbents ZnOAg CeO2 and Al2O3 were synthesized via the self propagation combustion method. This method was selected because of the purity of the final product and the energy requirement. One of the challenges in the removal of ARB in drinking water is the release of ARGs. To address this concern, five different ZnOAg heterostructures were synthesized for the removal of Enterococci faecium. ZnOAg was chosen because of the bactericidal and bacteriostatic characteristics. The study revealed that the concentration of the precursors influences the microstructures of the adsorbents; however, it did not significantly affect the adsorption efficiency. The maximum adsorption capacity q34.11 CFUg was obtained for Ag1Zn3.5. The kinetic studies revealed that Ag1Zn1 and Ag1Zn2 adsorbents agreed to the pseudofirst-order kinetic equation and adsorbents Ag2Zn1 Ag3.5Zn1 and Ag1Zn3.5 agreed to the pseudo-second-order kinetic equation. Initial tap-water pH range was beneficial for the adsorption and the pH of the treated tap-water was within the WHO tap water recommendation 6.5 – 8.5 whereas the effect of ionic strength, anionic and cationic interference was insignificant in the adsorption of MDREF onto the different heterostructure. Interestingly the MDREF could retain its cell membrane integrity and resistance genes, suggesting that surface adsorption was the primary mechanism for the removal. Cerium IV oxide CeO2 was selected because of high adsorption towards phosphate, backbone base for DNA. To prevent the problem of antibiotic resistance, we have synthesized a CeO2 adsorbent that exhibit highly positive character in a wide pH range, via the simple self-propagation combustion protocol, for the removal of free DNA harboring antibiotic resistance genes. Molecular characterization of the extracted genes showed that the sizes for E. coli and inherent gyrB genes are 147 and 460 bp with a purity between 19 2.0. The XRD SEM TEM, and PZC results of the as-synthesized CeO2 showed an agglomerate of pure cubic-faced centered material and highly crystalline, with a net charge at pH 6.2. Experimental results revealed that the reaction proceeded via pseudo first-order kinetic, and it is governed by electrostatic attraction. The free- DNA solution pH electrolyte, and competing ions impacted on the adsorption process. Further experimental results showed that the as-synthesized CeO2 adsorbent has the potential to be used for the removal of free DNA harboring ARGs from tap-water even under oxic conditions. Alumina Al2O3 is an abundant adsorbent that has also shown high removal capacity towards phosphate. The highly pure synthesized Al2O3 adsorbent exhibit fluid-like behaviour under Scanning Electron Microscope SEM. The XRD pattern corresponds to αAl2O3. The adsorption kinetics was described by pseudo second orderadsorption capacity 11.7 μgg implying chemisorption, which agrees with the electrostatic force of attraction caused by opposing ions. This result was evident by the effect of different ions in the tap water. The synthesized α-Al2O3 has the potential for the removal of cell free DNA harbouring multiply resistant genes. , Thesis (MSc) -- Faculty of Science and Agriculture, 2022
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Date Issued: 2022

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African birds as army ant followers

- Craig, Adrian J F K

Authors: Craig, Adrian J F K
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/448772 , vital:74759 , https://doi.org/10.1007/s10336-022-01987-0
Description: Ant-following birds have been studied extensively in the Neotropics, but much less information is currently available for the Afrotropics. There are published records of 168 African bird species from 37 families foraging in association with driver ants (Dorylus, sub-family Dorylinae). However, of 52 bird species assessed as regular ant-followers, 38 belong to three families, which are disproportionately represented compared to other large Afrotropical bird families: Muscicapidae (18 spp.), Pycnonotidae (13 spp.) and Turdidae (7 spp.). The extent to which these birds are dependent on ants through their annual cycle is not known. African driver ants forage primarily under shaded, humid conditions by day, and may spend a month or longer underground. Conservation assessments of African forest habitats suggest that both driver ants and ant-following birds may be especially sensitive to the loss of forest cover.
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Date Issued: 2022

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Age and growth of the Cape knifejaw Oplegnathus conwayi, an endemic South African teleost

- Foster, Ryan M, Childs, Amber-Robyn, Mann, Bruce Q, Potts, Warren M

Authors: Foster, Ryan M , Childs, Amber-Robyn , Mann, Bruce Q , Potts, Warren M
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/443128 , vital:74080 , https://doi.org/10.1080/15627020.2022.2035254
Description: The South African spearfishery targets a variety of data-deficient species, which are consequently poorly managed. This study aimed to describe the age and growth of one of these species, the Cape knifejaw, Oplegnathus conwayi, which is endemic to the southern and eastern coasts of South Africa. Monthly biological samples were collected through research spearfishing (n = 170) and augmented by recreational spearfishers’ catches (n = 135). The results indicated that the O. conwayi population sex ratio was skewed towards males (1M:0.6F). The length- and age-frequency distributions were similar between sexes. Oplegnathus conwayi is a relatively slow-growing species, with a maximum-recorded age of 27 years. No significant differences were observed between male and female growth, with the overall population growth curve being best described as L(t) = 697.15(1 − e−0.06(t−6.30)). The slow growth observed in this species is characteristic of a species that is vulnerable to overexploitation, and accordingly a precautionary approach to future management is recommended.
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Date Issued: 2022

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Alignment, scaling and resourcing of citizen-based water quality monitoring Initiatives

- Lotz-Sisitka, Heila, Ward, Mike, Taylor, Jim, Vallabh, Priya, Madiba, Morakane, Graham, P Mark, Louw, Adrienne J, Brownell, Faye

Authors: Lotz-Sisitka, Heila , Ward, Mike , Taylor, Jim , Vallabh, Priya , Madiba, Morakane , Graham, P Mark , Louw, Adrienne J , Brownell, Faye
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , report
Identifier: http://hdl.handle.net/10962/435729 , vital:73195 , ISBN 978-0-6392-0344-7 , https://wrcwebsite.azurewebsites.net/wp-content/uploads/mdocs/2854%20final.pdf
Description: This action-oriented research project seeks to address the policy-practice contradiction that exists between commit-ments and requirements for citizen engagement and in-volvement in Integrated Water Quality Management (IWQM) and a lack of sustainable support for scaling high quality Citi-zen-based Water Quality Monitoring (CBWQM) practices that exist in South Africa.
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Date Issued: 2022

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AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

- Isamura, Bienfait K, Lobb, Kevin A

Authors: Isamura, Bienfait K , Lobb, Kevin A
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , article
Identifier: http://hdl.handle.net/10962/453143 , vital:75226 , xlink:href="https://link.springer.com/article/10.1186/s13321-022-00618-3"
Description: Predicting transition state geometries is one of the most challenging tasks in computational chemistry, which often requires expert-based knowledge and permanent human intervention. This short communication reports technical details and preliminary results of a python-based tool (AMADAR) designed to generate any Diels–Alder (DA) transition state geometry (TS) and analyze determined IRC paths in a (quasi-)automated fashion, given the product SMILES. Two modules of the package are devoted to performing, from IRC paths, reaction force analyses (RFA) and atomic (fragment) decompositions of the reaction force F and reaction force constant κ. The performance of the protocol has been assessed using a dataset of 2000 DA cycloadducts retrieved from the ZINC database. The sequential location of the corresponding TSs was achieved with a success rate of 95%. RFA plots confrmed the reaction force constant κ to be a good indicator of the (non)synchronicity of the associated DA reactions. Moreover, the atomic decomposition of κ allows for the rationalization of the (a)synchronicity of each DA reaction in terms of contributions stemming from pairs of interacting atoms. The source code of the AMADAR tool is available on GitHub [CMCDD/AMADAR(github. com)] and can be used directly with minor customizations, mostly regarding the local working environment of the user.
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Date Issued: 2022

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AMANZI For Food

- Lotz-Sisitka, Heila, Pesanayi, Tichaona, Sisitka, Lawrence, Metelerkamp, Luke, Chakona, Gamuchirai, van Staden, Wilma, Durr, Sarah, Matiwane, Mandelive, Maqwelane, Lwanda, Conde-Aller, Laura, Shawarire, Patience

Authors: Lotz-Sisitka, Heila , Pesanayi, Tichaona , Sisitka, Lawrence , Metelerkamp, Luke , Chakona, Gamuchirai , van Staden, Wilma , Durr, Sarah , Matiwane, Mandelive , Maqwelane, Lwanda , Conde-Aller, Laura , Shawarire, Patience
Date: 2022
Subjects: To be catalogued
Language: English
Type: text , report
Identifier: http://hdl.handle.net/10962/435745 , vital:73197 , ISBN 978-0-6392-0309-6 , https://wrcwebsite.azurewebsites.net/wp-content/uploads/mdocs/TT 868 final web.pdf
Description: This action-oriented research project seeks to address the policy-practice contradiction that exists between commit-ments and requirements for citizen engagement and in-volvement in Integrated Water Quality Management (IWQM) and a lack of sustainable support for scaling high quality Citi-zen-based Water Quality Monitoring (CBWQM) practices that exist in South Africa.
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Date Issued: 2022

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