Analyses of the simple harmonic oscillator and its variations
- Authors: Bambiso, Noludwe Patience
- Date: 2017
- Subjects: Harmonic analysis Vibration -- Mathematical models Oscillations
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8132 , vital:31530
- Description: Vibratory motion is fundamental to all natural phenomena. It occurs everywhere in nature, from fundamental particles to the complexity of the life of the smallest cell, to the properties of the cosmos. Its frequency ranges from those of gammarays down the spectrum of X-rays, microwave, optical and radio waves. These are common concepts in everyday life, but their origin and nature are seldom comprehended. In this thesis we look at the mathematical fundamentals and how to apply them. We start with fundamental concepts and extend them to more complicated systems. We consider methods of analysis and applications. In Chapter 2 we consider simple harmonic oscillators and their mathematical analyses and in Chapter 3 we look at applications. Chapter 4 discusses the general form of simple harmonic motion, i.e. damped and forced harmonic motion. We consider simple coupled systems and their analysis. In Chapter 5 we introduce the method of complex functions and its application to complicated compound systems. Chapter 6 introduces a novel application, that of how SHM can be used as a model for advanced effects, or acausality. Chapter 7 presents a summary and conclusion.
- Full Text:
- Date Issued: 2017
- Authors: Bambiso, Noludwe Patience
- Date: 2017
- Subjects: Harmonic analysis Vibration -- Mathematical models Oscillations
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/8132 , vital:31530
- Description: Vibratory motion is fundamental to all natural phenomena. It occurs everywhere in nature, from fundamental particles to the complexity of the life of the smallest cell, to the properties of the cosmos. Its frequency ranges from those of gammarays down the spectrum of X-rays, microwave, optical and radio waves. These are common concepts in everyday life, but their origin and nature are seldom comprehended. In this thesis we look at the mathematical fundamentals and how to apply them. We start with fundamental concepts and extend them to more complicated systems. We consider methods of analysis and applications. In Chapter 2 we consider simple harmonic oscillators and their mathematical analyses and in Chapter 3 we look at applications. Chapter 4 discusses the general form of simple harmonic motion, i.e. damped and forced harmonic motion. We consider simple coupled systems and their analysis. In Chapter 5 we introduce the method of complex functions and its application to complicated compound systems. Chapter 6 introduces a novel application, that of how SHM can be used as a model for advanced effects, or acausality. Chapter 7 presents a summary and conclusion.
- Full Text:
- Date Issued: 2017
Ant colony optimisation-based algorithms for optical burst switching networks
- Gravett, Andrew Scott, Gibbon, Timothy B
- Authors: Gravett, Andrew Scott , Gibbon, Timothy B
- Date: 2017
- Subjects: Distributed algorithms , Ants -- Behavior -- Mathematical models
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/18939 , vital:28757
- Description: This research developed two novel distributed algorithms inspired by Ant Colony Optimisation (ACO) for a solution to the problem of dynamic Routing and Wavelength Assignment (RWA) with wavelength continuity constraint in Optical Burst Switching (OBS) networks utilising both the traditional International Telecommunication Union (ITU) Fixed Grid Wavelength Division Multiplexing (WDM) and Flexible Spectrum scenarios. The growing demand for more bandwidth in optical networks require more efficient utilisation of available optical resources. OBS is a promising optical switching technique for the improved utilisation of optical network resources over the current optical circuit switching technique. The development of newer technologies has introduced higher rate transmissions and various modulation formats, however, introducing these technologies into the traditional ITU Fixed Grid does not efficiently utilise the available bandwidth. Flexible Spectrum is a promising approach offering a solution to the problem of improving bandwidth utilisation, which comes with a potential cost. Transmissions have the potential for impairment with respect to the increased traffic and lack of large channel spacing. Proposed routing algorithms should be aware of the linear and non-linear Physical Layer Impairments (PLIs) in order to operate closer to optimum performance. The OBS resource reservation protocol does not cater for the loss of transmissions, Burst Control Packets (BCPs) included, due to physical layer impairments. The protocol was adapted for use in Flexible Spectrum. Investigation of the use of a route and wavelength combination, from source to destination node pair, for the RWA process was proposed for ACO-based approaches to enforce the establishment and use of complete paths for greedy exploitation in Flexible Spectrum was conducted. The routing tuple for the RWA process is the tight coupling of a route and wavelength in combination intended to promote the greedy exploitation of successful paths for transmission requests. The application of the routing tuples differs from traditional ACO-based approaches and prompted the investigation of new pheromone calculation equations. The two novel proposed approaches were tested and experiments conducted comparing with and against existing algorithms (a simple greedy and an ACO-based algorithm) in a traditional ITU Fixed Grid and Flexible Spectrum scenario on three different network topologies. The proposed Flexible Spectrum Ant Colony (FSAC) approach had a markably improved performance over the existing algorithms in the ITU Fixed Grid WDM and Flexible Spectrum scenarios, while Upper Confidence Bound Routing and Wavelength Assignment (UCBRWA) algorithm was able to perform well in the traditional ITU Fixed Grid WDM scenario, but underperformed in the Flexible Spectrum scenario. The results show that the distributed ACO-based FSAC algorithm significantly improved the burst transmission success probability, providing a good solution in the Flexible Spectrum network environment undergoing transmission impairments.
- Full Text:
- Date Issued: 2017
- Authors: Gravett, Andrew Scott , Gibbon, Timothy B
- Date: 2017
- Subjects: Distributed algorithms , Ants -- Behavior -- Mathematical models
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/18939 , vital:28757
- Description: This research developed two novel distributed algorithms inspired by Ant Colony Optimisation (ACO) for a solution to the problem of dynamic Routing and Wavelength Assignment (RWA) with wavelength continuity constraint in Optical Burst Switching (OBS) networks utilising both the traditional International Telecommunication Union (ITU) Fixed Grid Wavelength Division Multiplexing (WDM) and Flexible Spectrum scenarios. The growing demand for more bandwidth in optical networks require more efficient utilisation of available optical resources. OBS is a promising optical switching technique for the improved utilisation of optical network resources over the current optical circuit switching technique. The development of newer technologies has introduced higher rate transmissions and various modulation formats, however, introducing these technologies into the traditional ITU Fixed Grid does not efficiently utilise the available bandwidth. Flexible Spectrum is a promising approach offering a solution to the problem of improving bandwidth utilisation, which comes with a potential cost. Transmissions have the potential for impairment with respect to the increased traffic and lack of large channel spacing. Proposed routing algorithms should be aware of the linear and non-linear Physical Layer Impairments (PLIs) in order to operate closer to optimum performance. The OBS resource reservation protocol does not cater for the loss of transmissions, Burst Control Packets (BCPs) included, due to physical layer impairments. The protocol was adapted for use in Flexible Spectrum. Investigation of the use of a route and wavelength combination, from source to destination node pair, for the RWA process was proposed for ACO-based approaches to enforce the establishment and use of complete paths for greedy exploitation in Flexible Spectrum was conducted. The routing tuple for the RWA process is the tight coupling of a route and wavelength in combination intended to promote the greedy exploitation of successful paths for transmission requests. The application of the routing tuples differs from traditional ACO-based approaches and prompted the investigation of new pheromone calculation equations. The two novel proposed approaches were tested and experiments conducted comparing with and against existing algorithms (a simple greedy and an ACO-based algorithm) in a traditional ITU Fixed Grid and Flexible Spectrum scenario on three different network topologies. The proposed Flexible Spectrum Ant Colony (FSAC) approach had a markably improved performance over the existing algorithms in the ITU Fixed Grid WDM and Flexible Spectrum scenarios, while Upper Confidence Bound Routing and Wavelength Assignment (UCBRWA) algorithm was able to perform well in the traditional ITU Fixed Grid WDM scenario, but underperformed in the Flexible Spectrum scenario. The results show that the distributed ACO-based FSAC algorithm significantly improved the burst transmission success probability, providing a good solution in the Flexible Spectrum network environment undergoing transmission impairments.
- Full Text:
- Date Issued: 2017
Antimalarial secondary metabolites from Morinda lucida
- Authors: Chithambo, Bertha
- Date: 2017
- Subjects: Botanical chemistry , Anthraquinones , Antimalarials , Rubiaceae -- Therapeutic use , Malaria -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/45730 , vital:25535
- Description: Antimalarial activities of secondary metabolites from Morinda lucida (Rubiaceae), were investigated. Even though M. lucida is traditionally used to treat malaria, diabetes, jaundice, hypertension, dysentery and many other diseases, the compounds in this plant have not yet been fully investigated and characterised. Most of the studies that have been done on this plant focused on the medicinal properties of the crude extracts but have not gone further to isolate and characterise the compounds. In this study, the methanol - dichloromethane crude extract from the bark of M. lucida was fractionated into fractions 1-8. Fractions 2-5 were purified in order to isolate active secondary metabolites. The isolated pure compounds were characterised and identified. An in vitro antimalarial assay was carried out on the crude extract, fractions, pure compounds and solutions made from different combinations of pure compounds using the parasite lactate dehydrogenase (pLDH) assay. An IC50 done on the methanolic crude extract gave a value of 25 µg/mL. The % cell viability for the crude extract in cell toxicity assay remained at 100%. Each of the pure compounds tested had very little activity. Their activities were increased when samples from the different compounds were mixed. One of these mixtures reduced malaria viability to about 22 % at 20 µM and gave an IC50 value of 17 µM. Antibacterial assays were also carried out on the crude extract and fractions. Fractions 2 and 3 were relatively active (MIC values ranging between 125-1000 µg/mL) against M. cattarhalis and E. faecalis. Fraction 2 was also the most active on S. typhimurium and S. aureus (MIC value of 1000 µg/mL) compared with the other fractions. This same fraction also showed some activity against M. tuberculosis with MIC90 and MIC99 values of 40.9 and 46.3 µg/mL respectively in an anti-tuberculosis assay.The following compounds, comprising of iridoids (asperuloside and asperulosidic acid), terpenoids (stigmasterol, P-sitosterol, campesterol, lanosterol and cycloartenol) and anthraquinones [5,15-O-dimethylmorindol, 1,7-dihydroxy-2-methoxy-5-(methoxymethyl) anthraquinone and 1,6-dihydroxy-2-methoxy-5-(methoxymethyl)anthraquinone], were isolated. All these compounds have been isolated from different plants before with the exception of 1,7-dihydroxy-2-methoxy-5-(methoxymethyl)anthraquinone and 1,6-dihydroxy-2-methoxy-5-(methoxymethyl)anthraquinone which were tentatively assigned the structures due to insufficient data. To the best of our knowledge, this is the first report on the identification of all of the mentioned compounds, with the exception of ß-sitosterol and stigmasterol, from M. lucida. Molecular docking was performed on one of the isolated anthraquinones (5,15-O- dimethylmorindol) to check if it can bind to cytochrome bci, a known target for atovaquone. This compound interacted with the same amino acids that atovaquone, a well known antimalarial agent, interacted with on cytochrome bc1 indicating a possible similar mode of action.
- Full Text:
- Date Issued: 2017
- Authors: Chithambo, Bertha
- Date: 2017
- Subjects: Botanical chemistry , Anthraquinones , Antimalarials , Rubiaceae -- Therapeutic use , Malaria -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/45730 , vital:25535
- Description: Antimalarial activities of secondary metabolites from Morinda lucida (Rubiaceae), were investigated. Even though M. lucida is traditionally used to treat malaria, diabetes, jaundice, hypertension, dysentery and many other diseases, the compounds in this plant have not yet been fully investigated and characterised. Most of the studies that have been done on this plant focused on the medicinal properties of the crude extracts but have not gone further to isolate and characterise the compounds. In this study, the methanol - dichloromethane crude extract from the bark of M. lucida was fractionated into fractions 1-8. Fractions 2-5 were purified in order to isolate active secondary metabolites. The isolated pure compounds were characterised and identified. An in vitro antimalarial assay was carried out on the crude extract, fractions, pure compounds and solutions made from different combinations of pure compounds using the parasite lactate dehydrogenase (pLDH) assay. An IC50 done on the methanolic crude extract gave a value of 25 µg/mL. The % cell viability for the crude extract in cell toxicity assay remained at 100%. Each of the pure compounds tested had very little activity. Their activities were increased when samples from the different compounds were mixed. One of these mixtures reduced malaria viability to about 22 % at 20 µM and gave an IC50 value of 17 µM. Antibacterial assays were also carried out on the crude extract and fractions. Fractions 2 and 3 were relatively active (MIC values ranging between 125-1000 µg/mL) against M. cattarhalis and E. faecalis. Fraction 2 was also the most active on S. typhimurium and S. aureus (MIC value of 1000 µg/mL) compared with the other fractions. This same fraction also showed some activity against M. tuberculosis with MIC90 and MIC99 values of 40.9 and 46.3 µg/mL respectively in an anti-tuberculosis assay.The following compounds, comprising of iridoids (asperuloside and asperulosidic acid), terpenoids (stigmasterol, P-sitosterol, campesterol, lanosterol and cycloartenol) and anthraquinones [5,15-O-dimethylmorindol, 1,7-dihydroxy-2-methoxy-5-(methoxymethyl) anthraquinone and 1,6-dihydroxy-2-methoxy-5-(methoxymethyl)anthraquinone], were isolated. All these compounds have been isolated from different plants before with the exception of 1,7-dihydroxy-2-methoxy-5-(methoxymethyl)anthraquinone and 1,6-dihydroxy-2-methoxy-5-(methoxymethyl)anthraquinone which were tentatively assigned the structures due to insufficient data. To the best of our knowledge, this is the first report on the identification of all of the mentioned compounds, with the exception of ß-sitosterol and stigmasterol, from M. lucida. Molecular docking was performed on one of the isolated anthraquinones (5,15-O- dimethylmorindol) to check if it can bind to cytochrome bci, a known target for atovaquone. This compound interacted with the same amino acids that atovaquone, a well known antimalarial agent, interacted with on cytochrome bc1 indicating a possible similar mode of action.
- Full Text:
- Date Issued: 2017
Applicability of putative probiotic bacteria to replace antibiotics as growth promoters in commercial and indigenous piglets
- Authors: Dlamini, Ziyanda Confidence
- Date: 2017
- Subjects: Antibiotics , Dietary supplements , Piglets
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/11428 , vital:39071
- Description: Antibiotic use in pig production contributes to development of antimicrobial resistance in food animals and risk of antibiotic residues in animal food products. The use of probiotics appears to be the potential alternative to antibiotics. This work is designed to validate the applicability of administered direct-fed putative probiotic strains of Lactobacillus reuteri ZJ625, Lactobacillus reuteri VB4, Lactobacillus salivarius ZJ614 and Streptococcus salivarius NBCR 13956 on growth performance, hematological parameters, and antibody stimulation in weaned commercial and indigenous pigs. Forty-five weaned piglets were divided into five treatment experimental groups as follows: Diet with: antibiotic (PC), No antibiotic and no probiotic (NC), Probiotic (P1) (P2) combination of probiotics (P3). Piglets’ performance were monitored during the trial. Faecal and ileum samples were collected for microbial count analysis. Blood samples were collected from the sacrificed piglets at the end of the trial, for the hematological and biochemical analysis and probiotics ability to stimulate immunoglobulin G (IgG). Four probiotic strains were tested for cell surface hydrophobicity against xylene, chloroform and ethyl acetate. The strains were also tested for auto-aggregation and co-aggregation abilities. Enterococcus faecalis ATCC 29212 was used as a control pathogen in the co-aggregation ability test. The probiotic strains were also screened for presence of virulence and resistance genes. DNA was extracted from all the four probiotic strains using ZR Fungal/Bacterial DNA MiniPepTM (Zymo Research, USA) following manufacturer’s instructions. The DNA samples were later amplified in PCR reactions with specific primers to detect virulence genes of adhesion collagen protein (ace), aggregation substances (agg and asa); antibiotic resistance genes of: Vancomycin vanA, Vancomycin vanC1 and Vancomycin vanC2/3. The data was analyzed by one-way ANOVA using SAS statistics software (SAS 9.3) (2003). Results from the study revealed that supplementation of probiotics had no effect on feed intake (FI) in all of the experimental groups. However, supplementation of probiotics in P3 treatment resulted in greater average daily gain (ADG) and improved feed conversion ratio (FCR) of weaned piglets (p < 0.05). Microbial count of fecal samples from all the treatment groups did not differ while ileum samples had lower enteric bacteria in P3 group as compared to other treatments. Concentration of albumin, globulin, neutrophils and basophils were high in NC treatment compared to other treatments. (p < 0.05). IgG concentration was highest in P3 compared to other treatment (p < 0.05). All probiotics strains showed high hydrophobicity to all solvents used in the test. Cell Surface Hydrophobic was highest in xylene (78percent – 84percent), followed by chloroform (68percent – 75percent) and lowest in ethyl acetate (52percent - 60percent). All of the test strains showed high auto-aggregation ability after 4 hr of incubation. L .reuteri VB4 exhibited highest auto-aggregation ability of 70percent, while the least auto-aggregation ability of 60percent was observed for L. salivarius ZJ614. In the co-aggregation assays, all probiotic bacterial strains exhibited a strong co-aggregation of 45percent to 56percent after 4 hr of incubation at 37 °C. L. reuteri VB4 exhibited highest co-aggregation ability while L. salivarius ZJ614 exhibited the lowest co-aggregation ability. No presence of virulence genes ace and asa was detected in all of the putative probiotic strains, but agg virulence gene was detected in L. reuteri VB4 strains. L. reuteri VB4 and S. salivarius NBRC13956 had resistance genes vanC 2/3 and vanC1, respectively. Overall, the results from this study, suggest that the candidate probiotics strains have enhanced the growth and measured blood parameters of the weaned piglets used in these experiments, and also, the probiotic strains have the abilities to initiate the stimulation of IgG. Probiotics could be used as a novel alternative to antibiotics in the animal nutrition and production, with the abilities to confer health benefits and promote growth. The outcome of the research advocates that these probiotics will be beneficial to pig production, and might outcompete the current antibiotics in use as growth promoters. One of the major advantages of probiotics to pig industry is the production of antibiotic free and good quality pork meat to local and international consumers, thus, enhancing South African Pork industry.
- Full Text:
- Date Issued: 2017
- Authors: Dlamini, Ziyanda Confidence
- Date: 2017
- Subjects: Antibiotics , Dietary supplements , Piglets
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/11428 , vital:39071
- Description: Antibiotic use in pig production contributes to development of antimicrobial resistance in food animals and risk of antibiotic residues in animal food products. The use of probiotics appears to be the potential alternative to antibiotics. This work is designed to validate the applicability of administered direct-fed putative probiotic strains of Lactobacillus reuteri ZJ625, Lactobacillus reuteri VB4, Lactobacillus salivarius ZJ614 and Streptococcus salivarius NBCR 13956 on growth performance, hematological parameters, and antibody stimulation in weaned commercial and indigenous pigs. Forty-five weaned piglets were divided into five treatment experimental groups as follows: Diet with: antibiotic (PC), No antibiotic and no probiotic (NC), Probiotic (P1) (P2) combination of probiotics (P3). Piglets’ performance were monitored during the trial. Faecal and ileum samples were collected for microbial count analysis. Blood samples were collected from the sacrificed piglets at the end of the trial, for the hematological and biochemical analysis and probiotics ability to stimulate immunoglobulin G (IgG). Four probiotic strains were tested for cell surface hydrophobicity against xylene, chloroform and ethyl acetate. The strains were also tested for auto-aggregation and co-aggregation abilities. Enterococcus faecalis ATCC 29212 was used as a control pathogen in the co-aggregation ability test. The probiotic strains were also screened for presence of virulence and resistance genes. DNA was extracted from all the four probiotic strains using ZR Fungal/Bacterial DNA MiniPepTM (Zymo Research, USA) following manufacturer’s instructions. The DNA samples were later amplified in PCR reactions with specific primers to detect virulence genes of adhesion collagen protein (ace), aggregation substances (agg and asa); antibiotic resistance genes of: Vancomycin vanA, Vancomycin vanC1 and Vancomycin vanC2/3. The data was analyzed by one-way ANOVA using SAS statistics software (SAS 9.3) (2003). Results from the study revealed that supplementation of probiotics had no effect on feed intake (FI) in all of the experimental groups. However, supplementation of probiotics in P3 treatment resulted in greater average daily gain (ADG) and improved feed conversion ratio (FCR) of weaned piglets (p < 0.05). Microbial count of fecal samples from all the treatment groups did not differ while ileum samples had lower enteric bacteria in P3 group as compared to other treatments. Concentration of albumin, globulin, neutrophils and basophils were high in NC treatment compared to other treatments. (p < 0.05). IgG concentration was highest in P3 compared to other treatment (p < 0.05). All probiotics strains showed high hydrophobicity to all solvents used in the test. Cell Surface Hydrophobic was highest in xylene (78percent – 84percent), followed by chloroform (68percent – 75percent) and lowest in ethyl acetate (52percent - 60percent). All of the test strains showed high auto-aggregation ability after 4 hr of incubation. L .reuteri VB4 exhibited highest auto-aggregation ability of 70percent, while the least auto-aggregation ability of 60percent was observed for L. salivarius ZJ614. In the co-aggregation assays, all probiotic bacterial strains exhibited a strong co-aggregation of 45percent to 56percent after 4 hr of incubation at 37 °C. L. reuteri VB4 exhibited highest co-aggregation ability while L. salivarius ZJ614 exhibited the lowest co-aggregation ability. No presence of virulence genes ace and asa was detected in all of the putative probiotic strains, but agg virulence gene was detected in L. reuteri VB4 strains. L. reuteri VB4 and S. salivarius NBRC13956 had resistance genes vanC 2/3 and vanC1, respectively. Overall, the results from this study, suggest that the candidate probiotics strains have enhanced the growth and measured blood parameters of the weaned piglets used in these experiments, and also, the probiotic strains have the abilities to initiate the stimulation of IgG. Probiotics could be used as a novel alternative to antibiotics in the animal nutrition and production, with the abilities to confer health benefits and promote growth. The outcome of the research advocates that these probiotics will be beneficial to pig production, and might outcompete the current antibiotics in use as growth promoters. One of the major advantages of probiotics to pig industry is the production of antibiotic free and good quality pork meat to local and international consumers, thus, enhancing South African Pork industry.
- Full Text:
- Date Issued: 2017
Appropriate integration of workers with physical limitations into a manual workplace – development of an assessment tool
- Authors: Pearson, Jessie T
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/8209 , vital:21368
- Description: Background: People with physical limitations can contribute significantly to society and the economy, however, barriers to full and effective participation in the labour market often hinder decent employment. In light of this, placement decisions of impaired workers should be based on detailed information of the nature of the jobs available, as well as individual capabilities of the worker. An ergonomics approach to design attempts to achieve an appropriate balance between the capabilities of the worker and the requirements of the task and uses this balance to improve productivity and encourage physical and mental well-being, job satisfaction and safety. A specific analysis tool which can be applied to various workplaces and jobs, and provide information for decisions regarding placement of physically limited workers, will help to increase the percentage of correct placement in an appropriate workplace, resulting in optimum productivity and worker safety. Methods: An assessment tool which allows matching of job requirements and worker capabilities was developed based on a theoretical framework from Mattison and Goebel (2007), as well as principles defined by Almgren and Schaurig (2012) and Demura and Nakada (2010). The tool assesses range of motion, force and time components of the physical requirements of different tasks involved in the job, as well as movement capabilities and limitations of the worker. The tool was pilot tested in a case study with an above the knee amputee working at a research facility. Results: The tool successfully provided information regarding the matching of the work to the identified job. The output of the tool highlighted two tasks which would place the worker at risk due to physical requirements of the tasks being greater than movement capabilities of the worker. These tasks need to be further investigated to determine if accommodations can be made to assist the worker in safely performing the task, or if the job is not suitable for the worker. Conclusions: The tool developed was useful in providing information to inform appropriate placement of the physically limited worker. Further research needs to be done to validate and determine reliability of the tool.
- Full Text:
- Date Issued: 2017
- Authors: Pearson, Jessie T
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/8209 , vital:21368
- Description: Background: People with physical limitations can contribute significantly to society and the economy, however, barriers to full and effective participation in the labour market often hinder decent employment. In light of this, placement decisions of impaired workers should be based on detailed information of the nature of the jobs available, as well as individual capabilities of the worker. An ergonomics approach to design attempts to achieve an appropriate balance between the capabilities of the worker and the requirements of the task and uses this balance to improve productivity and encourage physical and mental well-being, job satisfaction and safety. A specific analysis tool which can be applied to various workplaces and jobs, and provide information for decisions regarding placement of physically limited workers, will help to increase the percentage of correct placement in an appropriate workplace, resulting in optimum productivity and worker safety. Methods: An assessment tool which allows matching of job requirements and worker capabilities was developed based on a theoretical framework from Mattison and Goebel (2007), as well as principles defined by Almgren and Schaurig (2012) and Demura and Nakada (2010). The tool assesses range of motion, force and time components of the physical requirements of different tasks involved in the job, as well as movement capabilities and limitations of the worker. The tool was pilot tested in a case study with an above the knee amputee working at a research facility. Results: The tool successfully provided information regarding the matching of the work to the identified job. The output of the tool highlighted two tasks which would place the worker at risk due to physical requirements of the tasks being greater than movement capabilities of the worker. These tasks need to be further investigated to determine if accommodations can be made to assist the worker in safely performing the task, or if the job is not suitable for the worker. Conclusions: The tool developed was useful in providing information to inform appropriate placement of the physically limited worker. Further research needs to be done to validate and determine reliability of the tool.
- Full Text:
- Date Issued: 2017
Aspects of the feeding biology of the copepod Pseudodiaptomus hessei (Copepoda: Calanoida) under culture conditions
- Authors: Mzozo, Ziyanda
- Date: 2017
- Subjects: Copepoda Microbial ecology Fishes -- Feeding and feeds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/4727 , vital:28502
- Description: This study aimed to investigate the feeding behaviour of the calanoid copepod, Pseudodiaptomus hessei, particularly whether it prefers to feed on a planktonic or benthic food source. The effect of different microalgae species on the feeding preference, ingestion, and gut evacuation rate were investigated. Two microalgae species (Isochrysis galbana and Tetraselmis suecica) were used, to test gut fullness and gut evacuation of P. hessei. The copepods were starved for 6 h and allowed to feed on monalgae diets, I .galbana and T. suecica, and a 1:1 binary diet mixture of T. suecica and I. galbana. The gut fullness and gut evacuation rates were determined by observing under the dissecting microscope and gut content percentage was recorded (as 0, 25, 50, 75 or 100 percent) along with copepod sex. Copepods that feed on T. suecica fill their gut after 30 min, while those that feed on I. galbana do so after 40 min. There was a significant difference (p= 0.02) between sexes with males filling their gut faster than females. However, copepods that fed on I. galbana evacuated their gut content completely after 30 min, while those fed on T suecica evacuated theirs after 40 min. There was no difference between males and females for gut evacuation. Even though there was high gut fullness rate when P. hessei was feeding on T. suecica, I. galbana is recommended as the best mono-algae diet to culture P. hessei. The feeding behaviour of P. hessei was investigated, as to whether it prefers to feed on a planktonic or benthic food source. Copepods were starved for 3 h and then allowed to feed on two microalgae species (I. galbana and T. suecica), one presented as a benthic and other as planktonic. Controls included swapping the modes of presentation for each algae species. Ingested microalgae species were quantified using real-time PCR, with threshold cycles interpreted as relative abundance ratio (planktonic microalgae divided by benthic microalgae species). Pseudodiaptomus hessei preferred to feed on planktonic food sources initially as there was a difference between planktonic and benthic ingested food (p=0.026). Copepods shifted from planktonic to benthic food sources after 80 min of feeding planktonically. Planktonic food sources were the preferred choice for P. hessei regardless of microalgae species offered. The results from this study also confirm that P. hessei feed on a benthic food source during the day under culture conditions. This information can be used as baseline information for aquaculturists to rear the species as live feed for marine fish larvae.
- Full Text:
- Date Issued: 2017
- Authors: Mzozo, Ziyanda
- Date: 2017
- Subjects: Copepoda Microbial ecology Fishes -- Feeding and feeds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/4727 , vital:28502
- Description: This study aimed to investigate the feeding behaviour of the calanoid copepod, Pseudodiaptomus hessei, particularly whether it prefers to feed on a planktonic or benthic food source. The effect of different microalgae species on the feeding preference, ingestion, and gut evacuation rate were investigated. Two microalgae species (Isochrysis galbana and Tetraselmis suecica) were used, to test gut fullness and gut evacuation of P. hessei. The copepods were starved for 6 h and allowed to feed on monalgae diets, I .galbana and T. suecica, and a 1:1 binary diet mixture of T. suecica and I. galbana. The gut fullness and gut evacuation rates were determined by observing under the dissecting microscope and gut content percentage was recorded (as 0, 25, 50, 75 or 100 percent) along with copepod sex. Copepods that feed on T. suecica fill their gut after 30 min, while those that feed on I. galbana do so after 40 min. There was a significant difference (p= 0.02) between sexes with males filling their gut faster than females. However, copepods that fed on I. galbana evacuated their gut content completely after 30 min, while those fed on T suecica evacuated theirs after 40 min. There was no difference between males and females for gut evacuation. Even though there was high gut fullness rate when P. hessei was feeding on T. suecica, I. galbana is recommended as the best mono-algae diet to culture P. hessei. The feeding behaviour of P. hessei was investigated, as to whether it prefers to feed on a planktonic or benthic food source. Copepods were starved for 3 h and then allowed to feed on two microalgae species (I. galbana and T. suecica), one presented as a benthic and other as planktonic. Controls included swapping the modes of presentation for each algae species. Ingested microalgae species were quantified using real-time PCR, with threshold cycles interpreted as relative abundance ratio (planktonic microalgae divided by benthic microalgae species). Pseudodiaptomus hessei preferred to feed on planktonic food sources initially as there was a difference between planktonic and benthic ingested food (p=0.026). Copepods shifted from planktonic to benthic food sources after 80 min of feeding planktonically. Planktonic food sources were the preferred choice for P. hessei regardless of microalgae species offered. The results from this study also confirm that P. hessei feed on a benthic food source during the day under culture conditions. This information can be used as baseline information for aquaculturists to rear the species as live feed for marine fish larvae.
- Full Text:
- Date Issued: 2017
Assessing MODIS evapotranspiration data for hydrological modelling in South Africa
- Mazibuko, Sbongiseni Christian
- Authors: Mazibuko, Sbongiseni Christian
- Date: 2017
- Subjects: Evapotranspiration , Evapotranspiration -- Measurement , Hydrologic models , Hydrologic models -- South Africa , MODIS (Spectroradiometer)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/8009 , vital:21334
- Description: Evapotranspiration as a major component of the water balance has been identified as a key factor in hydrological modelling. Water management can be improved by means of increased use of reliable methods for estimating evapotranspiration. The limited availability of measured climate and discharge data sets, particularly in the developing world, restricts the reliability of hydrological models in these regions. Furthermore, rapid changes in hydrological systems with increasing development mean uncertainties in water resource estimation are growing. These changes are related to the modification of catchment hydrological processes with increasing human activity. Dealing with data uncertainty and quantifying the impacts of catchment activities are significant challenges that scientists in the field of hydrology face today. Uncertainties in hydrometeorological data are associated with poor observation networks that provide data at point scales which are not adequately representative of the inherent heterogeneity within catchment processes. Using uncertain data in model applications reduces the predictive power of hydrological models as well as the ability to validate the model outcomes. This study examines the potential of using remote sensing-based evapotranspiration data to reduce uncertainty in the climatic forcing data and constraining the output of a rainfall-runoff hydrological model. It is common to use fixed seasonally variable potential evapotranspiration (PET) instead of temporally varying PET data as inputs to standard rainfall-runoff models. Part of the reason is that there are relatively few stations available to measure a variety of meteorological input data needed to compute PET, as well as the apparent lack of sensitivity of rainfall-runoff models to different types of PET inputs. As hydrometeorological data become more readily available through the use of earth observation systems, it is important to determine whether rainfall-runoff models are sensitive to time-varying PET derived from these earth observations systems. Further potential includes the use of actual evapotranspiration (ETa) from this type of data to constrain model outputs and improve model realism. It is assumed that a better representation of evapotranspiration demands could improve the efficiency of models, and this study explores some of these issues. The study used evapotranspiration estimates (PET and ETa) from the MOD16 global product with one of the most widely used hydrological models in South Africa. The investigation included applying the Pitman model in a number of case study catchments located in different climatic regions of the country. The main objectives of the study included (i) the establishment of behavioural model parameter sets that generate acceptable hydrological response under both naturalised and present-day conditions, (ii) the use of time-varying PET estimates derived from MOD16 data to force the model, and (iii) the use of MOD16 ETa estimates to constrain model-simulated ETa. Before examining the use of different PET forcing data in the model, a two-step modelling approached was employed both a single-run and an uncertainty version of the Pitman model. During the first step (using a single-run version), available information on catchment physical properties and regionalised groundwater recharge together with model calibration principles were used to develop model functionality understanding and establish initial parameter sets. The outcomes from the first step were used to define uncertain parameter ranges for the use in the uncertainty version of the Pitman model (second step). Further, catchment water uses were quantified to ensure comparability with present-day flow conditions represented by the stream flow records. The effects of forcing the Pitman model with MOD16-based time-varying PET data inputs were evaluated using static and dynamic sensitivity analysis approaches. In the static approach, parameter sets calibrated using fixed seasonal distributions of PET data remain unchanged when forcing the model with other forms of PET, whereas in the dynamic method, the model is recalibrated with changing PET inputs. In both approaches, model sensitivity was assessed by comparing objective function statistics of reference flow simulations with those simulations incorporating changing PET data inputs. The use of the MOD16 ETa data to constrain model- simulated evapotranspiration losses was conducted by calibrating the parameters such that the simulated-ETa matched the evapotranspiration loss estimated from the MOD16 data. Despite issues around model equifinality and significant uncertainty within water use information, the Pitman model simulations were generally satisfactory and compared with observed stream flow data where available. The use of time-varying PET data does not improve the efficiency of the model when both static and dynamic sensitivity approaches are used. This was highly expected with the static approach where fixed model parameter sets do not account for the changes in evapotranspiration demands. However, with the dynamic approach, it was difficult to conclude why the model efficiency did not improve given the flexibility of the model to achieve appropriate parameter sets to different forms of PET. The study noted that the insensitivity of the model to changes in PET demands could be due to uncertainties in the model structure and MOD16 data. Attempts to constrain the model-simulated actual evapotranspiration with MOD16 ETa estimates were hampered by large errors in the MOD16 data and resulted in the non-closure of the catchment annual water balance, even when likely errors in the other components of the water balance were accounted for. There is still a great deal of work that needs to be done to reduce uncertainties associated with the use of earth observation data in hydrological modelling. This study has identified some of the specific gaps within the application of evapotranspiration data from earth observation information. While the MOD16 data applied with the Pitman model did not achieve improved simulations, the study has demonstrated the enormous potential of the data product in the future should the identified uncertainties be resolved. Lastly, the investigation highlighted some of the possible model structural uncertainties specifically associated with the simplified soil-moisture accounting routines within the model. It is possible that amending the model structure through investigating the dynamics of the relationship between soil moisture and evapotranspiration losses would assist in the improved utilisation of earth observation products related to the MOD16 ET data.
- Full Text:
- Date Issued: 2017
- Authors: Mazibuko, Sbongiseni Christian
- Date: 2017
- Subjects: Evapotranspiration , Evapotranspiration -- Measurement , Hydrologic models , Hydrologic models -- South Africa , MODIS (Spectroradiometer)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/8009 , vital:21334
- Description: Evapotranspiration as a major component of the water balance has been identified as a key factor in hydrological modelling. Water management can be improved by means of increased use of reliable methods for estimating evapotranspiration. The limited availability of measured climate and discharge data sets, particularly in the developing world, restricts the reliability of hydrological models in these regions. Furthermore, rapid changes in hydrological systems with increasing development mean uncertainties in water resource estimation are growing. These changes are related to the modification of catchment hydrological processes with increasing human activity. Dealing with data uncertainty and quantifying the impacts of catchment activities are significant challenges that scientists in the field of hydrology face today. Uncertainties in hydrometeorological data are associated with poor observation networks that provide data at point scales which are not adequately representative of the inherent heterogeneity within catchment processes. Using uncertain data in model applications reduces the predictive power of hydrological models as well as the ability to validate the model outcomes. This study examines the potential of using remote sensing-based evapotranspiration data to reduce uncertainty in the climatic forcing data and constraining the output of a rainfall-runoff hydrological model. It is common to use fixed seasonally variable potential evapotranspiration (PET) instead of temporally varying PET data as inputs to standard rainfall-runoff models. Part of the reason is that there are relatively few stations available to measure a variety of meteorological input data needed to compute PET, as well as the apparent lack of sensitivity of rainfall-runoff models to different types of PET inputs. As hydrometeorological data become more readily available through the use of earth observation systems, it is important to determine whether rainfall-runoff models are sensitive to time-varying PET derived from these earth observations systems. Further potential includes the use of actual evapotranspiration (ETa) from this type of data to constrain model outputs and improve model realism. It is assumed that a better representation of evapotranspiration demands could improve the efficiency of models, and this study explores some of these issues. The study used evapotranspiration estimates (PET and ETa) from the MOD16 global product with one of the most widely used hydrological models in South Africa. The investigation included applying the Pitman model in a number of case study catchments located in different climatic regions of the country. The main objectives of the study included (i) the establishment of behavioural model parameter sets that generate acceptable hydrological response under both naturalised and present-day conditions, (ii) the use of time-varying PET estimates derived from MOD16 data to force the model, and (iii) the use of MOD16 ETa estimates to constrain model-simulated ETa. Before examining the use of different PET forcing data in the model, a two-step modelling approached was employed both a single-run and an uncertainty version of the Pitman model. During the first step (using a single-run version), available information on catchment physical properties and regionalised groundwater recharge together with model calibration principles were used to develop model functionality understanding and establish initial parameter sets. The outcomes from the first step were used to define uncertain parameter ranges for the use in the uncertainty version of the Pitman model (second step). Further, catchment water uses were quantified to ensure comparability with present-day flow conditions represented by the stream flow records. The effects of forcing the Pitman model with MOD16-based time-varying PET data inputs were evaluated using static and dynamic sensitivity analysis approaches. In the static approach, parameter sets calibrated using fixed seasonal distributions of PET data remain unchanged when forcing the model with other forms of PET, whereas in the dynamic method, the model is recalibrated with changing PET inputs. In both approaches, model sensitivity was assessed by comparing objective function statistics of reference flow simulations with those simulations incorporating changing PET data inputs. The use of the MOD16 ETa data to constrain model- simulated evapotranspiration losses was conducted by calibrating the parameters such that the simulated-ETa matched the evapotranspiration loss estimated from the MOD16 data. Despite issues around model equifinality and significant uncertainty within water use information, the Pitman model simulations were generally satisfactory and compared with observed stream flow data where available. The use of time-varying PET data does not improve the efficiency of the model when both static and dynamic sensitivity approaches are used. This was highly expected with the static approach where fixed model parameter sets do not account for the changes in evapotranspiration demands. However, with the dynamic approach, it was difficult to conclude why the model efficiency did not improve given the flexibility of the model to achieve appropriate parameter sets to different forms of PET. The study noted that the insensitivity of the model to changes in PET demands could be due to uncertainties in the model structure and MOD16 data. Attempts to constrain the model-simulated actual evapotranspiration with MOD16 ETa estimates were hampered by large errors in the MOD16 data and resulted in the non-closure of the catchment annual water balance, even when likely errors in the other components of the water balance were accounted for. There is still a great deal of work that needs to be done to reduce uncertainties associated with the use of earth observation data in hydrological modelling. This study has identified some of the specific gaps within the application of evapotranspiration data from earth observation information. While the MOD16 data applied with the Pitman model did not achieve improved simulations, the study has demonstrated the enormous potential of the data product in the future should the identified uncertainties be resolved. Lastly, the investigation highlighted some of the possible model structural uncertainties specifically associated with the simplified soil-moisture accounting routines within the model. It is possible that amending the model structure through investigating the dynamics of the relationship between soil moisture and evapotranspiration losses would assist in the improved utilisation of earth observation products related to the MOD16 ET data.
- Full Text:
- Date Issued: 2017
Assessing selected ecosystem services in urban green spaces in Bulawayo, Zimbabwe
- Ngulani, Thembelihle Tshandapiwa
- Authors: Ngulani, Thembelihle Tshandapiwa
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5856 , vital:20982
- Description: Urbanization has resulted in the building of numerous structures such as buildings and roads which reduces the amount of natural land. Urban space planning has taken this into consideration resulting in planned urban green spaces and remnant land within urban areas. Urban green spaces provide a number of ecosystem services which are beneficial to urban residents. This study sought to determine residents’ use and perception of urban green spaces in Bulawayo, the second largest city in Zimbabwe, and to quantify and value four selected ecosystem services, i.e. carbon sequestration by urban trees, urban heat island amelioration, spiritual services and firewood provision. All ecosystem services were valued using local a variety of direct or substitutive methods. Questionnaires were administered at green spaces to green space users to capture responses on reasons why they use green spaces and their perception of green spaces. Residents’ responses showed that they appreciate green spaces as multidimensional spaces which provide a number of benefits for cultural and provisioning services. The role of the green spaces in providing regulating services was not well appreciated by the residents as they did not directly experience these benefits. An association was revealed between primary purpose of visit to urban green spaces and household income. Residents in areas of medium and high density housing visited green spaces on a daily basis, whereas those in more affluent, low density housing areas visited green spaces less often, i.e. a few times a month Carbon sequestration rate was determined by measuring tree diameter within one year to determine increase in carbon sequestered. Bulawayo’s urban green spaces sequester 3 290 t/C/yr valued at approximately $13 000/yr. There was a significant difference in carbon sequestration by urban trees between formal and informal green spaces with formal green spaces sequestering more carbon. Indigenous trees were shown to sequester more carbon than exotic trees and trees with bigger stem diameter were determined sequester more carbon than trees with small diameter. The effect of urban green spaces on ambient temperature was determined by measuring ambient air temperature in green spaces and built up areas over six months. Urban green spaces in Bulawayo play a role in urban micro-climate regulation by reducing the ambient temperature in the green spaces as well as is built up areas. The mean difference between green spaces and surrounding urban areas was up to 60C, with larger green spaces generally showing larger differences. The green spaces extend their cooling effect to surrounding areas thus reducing the temperatures in surrounding residential areas thus reducing the energy demand used for indoor cooling. To determine why residents worship in green spaces, questionnaires were administered to congregation members to capture reasons why and how often they worship in green spaces, challenges faced by the congregants as well as assistance that can be given by the Bulawayo city council to improve the outdoor worship experience. Green spaces offer ideal places for worship in natural areas for congregants to be in touch with nature. The green spaces are also used by some congregations who ordinarily would worship in buildings but fail to do so due to lack of funds for rent or to purchase or construct a church building to use. The value of Bulawayo’s green spaces spiritual services was determined to be $92.50/ha/yr. Firewood provision was also determined by measuring tree diameter within one year to determine increase in fuelwood. The green spaces showed a significant difference in firewood production among sites. Formal green spaces were shown to produce more firewood as compared to informal green spaces and no difference was determined in growth rates between exotic and indigenous tree species. Bulawayo’s green spaces produce 1.9t/ha/yr of firewood with an ecosystem service value of $340 to $490 /ha/yr. These findings indicate the importance of urban green spaces in Bulawayo. They are multifunctional spaces, providing multiple ecosystem services. The local appreciation of the services provided by urban green spaces differs according to the type of service and location in the city. The value of services provided by green spaces is high, albeit not taken into account in planning decisions.
- Full Text:
- Date Issued: 2017
- Authors: Ngulani, Thembelihle Tshandapiwa
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/5856 , vital:20982
- Description: Urbanization has resulted in the building of numerous structures such as buildings and roads which reduces the amount of natural land. Urban space planning has taken this into consideration resulting in planned urban green spaces and remnant land within urban areas. Urban green spaces provide a number of ecosystem services which are beneficial to urban residents. This study sought to determine residents’ use and perception of urban green spaces in Bulawayo, the second largest city in Zimbabwe, and to quantify and value four selected ecosystem services, i.e. carbon sequestration by urban trees, urban heat island amelioration, spiritual services and firewood provision. All ecosystem services were valued using local a variety of direct or substitutive methods. Questionnaires were administered at green spaces to green space users to capture responses on reasons why they use green spaces and their perception of green spaces. Residents’ responses showed that they appreciate green spaces as multidimensional spaces which provide a number of benefits for cultural and provisioning services. The role of the green spaces in providing regulating services was not well appreciated by the residents as they did not directly experience these benefits. An association was revealed between primary purpose of visit to urban green spaces and household income. Residents in areas of medium and high density housing visited green spaces on a daily basis, whereas those in more affluent, low density housing areas visited green spaces less often, i.e. a few times a month Carbon sequestration rate was determined by measuring tree diameter within one year to determine increase in carbon sequestered. Bulawayo’s urban green spaces sequester 3 290 t/C/yr valued at approximately $13 000/yr. There was a significant difference in carbon sequestration by urban trees between formal and informal green spaces with formal green spaces sequestering more carbon. Indigenous trees were shown to sequester more carbon than exotic trees and trees with bigger stem diameter were determined sequester more carbon than trees with small diameter. The effect of urban green spaces on ambient temperature was determined by measuring ambient air temperature in green spaces and built up areas over six months. Urban green spaces in Bulawayo play a role in urban micro-climate regulation by reducing the ambient temperature in the green spaces as well as is built up areas. The mean difference between green spaces and surrounding urban areas was up to 60C, with larger green spaces generally showing larger differences. The green spaces extend their cooling effect to surrounding areas thus reducing the temperatures in surrounding residential areas thus reducing the energy demand used for indoor cooling. To determine why residents worship in green spaces, questionnaires were administered to congregation members to capture reasons why and how often they worship in green spaces, challenges faced by the congregants as well as assistance that can be given by the Bulawayo city council to improve the outdoor worship experience. Green spaces offer ideal places for worship in natural areas for congregants to be in touch with nature. The green spaces are also used by some congregations who ordinarily would worship in buildings but fail to do so due to lack of funds for rent or to purchase or construct a church building to use. The value of Bulawayo’s green spaces spiritual services was determined to be $92.50/ha/yr. Firewood provision was also determined by measuring tree diameter within one year to determine increase in fuelwood. The green spaces showed a significant difference in firewood production among sites. Formal green spaces were shown to produce more firewood as compared to informal green spaces and no difference was determined in growth rates between exotic and indigenous tree species. Bulawayo’s green spaces produce 1.9t/ha/yr of firewood with an ecosystem service value of $340 to $490 /ha/yr. These findings indicate the importance of urban green spaces in Bulawayo. They are multifunctional spaces, providing multiple ecosystem services. The local appreciation of the services provided by urban green spaces differs according to the type of service and location in the city. The value of services provided by green spaces is high, albeit not taken into account in planning decisions.
- Full Text:
- Date Issued: 2017
Assessing the outcomes and consequences of large carnivore reintroductions to the Eastern Cape, South Africa
- Banasiak, Natalia Matgorzata
- Authors: Banasiak, Natalia Matgorzata
- Date: 2017
- Subjects: Carnivores -- Reintroduction , Wildlife reintroduction
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/11963 , vital:27011
- Description: Reintroduction is a potentially powerful tool available to conservationists to cope with species population declines. Nonetheless, it is poorly understood and past reviews tend to indicate poor results. Reintroduction, under the sensu stricto IUCN definition, must have a primary objective of conservation; however species can be released to sites in their indigenous range (reintroduction sensu lato) to meet other objectives. The outcomes of these reintroductions s.l need to be assessed to determine how effectively they achieve their varied objectives. A Web of Science review revealed that only 32.1% of 131 publications on reintroduction provided clearly defined success criteria. Using economic, ecological, conservation and problem animal management objectives as reintroduction s.l. drivers, I developed context-dependent success definitions for each objective to use in reintroduction outcome assessments. These success criteria were then used to assess the reintroductions s.l. of large carnivores, namely lion, leopard, cheetah, African wild dog, spotted hyaena, and brown hyaena, to 16 private- and state-owned reserves in the Eastern Cape Province, South Africa. Ecotourism and ecological restoration were the most common objectives for the reintroduction of top predators to these reserves. Overall the reintroductions of large carnivores have been successful in meeting their objectives. Only African wild dogs have failed to establish in the province. Causes of objective-specific failures for the other species in some reserves included introductions of same-sex populations, lack of breeding events and changes in reserve management objectives. Assessments for leopard and brown hyaena were inconclusive due to lack of monitoring data. The reintroduction of large carnivores to the Eastern Cape Province has also resulted in the emergence of human-carnivore conflict on neighbouring properties. Carnivores have reportedly escaped from 8 reserves (61.5% of reserves) in the Eastern Cape. A total of 75 conflict events on 68 neighbouring properties (36.7% of neighbouring properties) have been reported. There is a major gap in research around conflict resulting from carnivore reintroductions and future research is required to fully understand the situation in the province in order to develop effective mitigation methods. An adaptive management approach to reintroductions is encouraged to improve monitoring and ensure reintroductions continue to meet their objectives. Furthermore, emerging consequences, such as human-wildlife conflict, and related mitigation strategies should be incorporated into management of reintroduced populations. Communities surrounding reintroduction sites should be educated on lifting baselines where conflict-causing species are recovering to ensure continued success of reintroduction undertakings. National management plans should be developed for all large carnivore species to improve the conservation value of small, fenced reserves that are typical of South African conservation, through a managed metapopulation approach. Management plans should include social, political, and economic factors that can influence the success of reintroductions and ultimate conservation outcomes.
- Full Text:
- Date Issued: 2017
- Authors: Banasiak, Natalia Matgorzata
- Date: 2017
- Subjects: Carnivores -- Reintroduction , Wildlife reintroduction
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/11963 , vital:27011
- Description: Reintroduction is a potentially powerful tool available to conservationists to cope with species population declines. Nonetheless, it is poorly understood and past reviews tend to indicate poor results. Reintroduction, under the sensu stricto IUCN definition, must have a primary objective of conservation; however species can be released to sites in their indigenous range (reintroduction sensu lato) to meet other objectives. The outcomes of these reintroductions s.l need to be assessed to determine how effectively they achieve their varied objectives. A Web of Science review revealed that only 32.1% of 131 publications on reintroduction provided clearly defined success criteria. Using economic, ecological, conservation and problem animal management objectives as reintroduction s.l. drivers, I developed context-dependent success definitions for each objective to use in reintroduction outcome assessments. These success criteria were then used to assess the reintroductions s.l. of large carnivores, namely lion, leopard, cheetah, African wild dog, spotted hyaena, and brown hyaena, to 16 private- and state-owned reserves in the Eastern Cape Province, South Africa. Ecotourism and ecological restoration were the most common objectives for the reintroduction of top predators to these reserves. Overall the reintroductions of large carnivores have been successful in meeting their objectives. Only African wild dogs have failed to establish in the province. Causes of objective-specific failures for the other species in some reserves included introductions of same-sex populations, lack of breeding events and changes in reserve management objectives. Assessments for leopard and brown hyaena were inconclusive due to lack of monitoring data. The reintroduction of large carnivores to the Eastern Cape Province has also resulted in the emergence of human-carnivore conflict on neighbouring properties. Carnivores have reportedly escaped from 8 reserves (61.5% of reserves) in the Eastern Cape. A total of 75 conflict events on 68 neighbouring properties (36.7% of neighbouring properties) have been reported. There is a major gap in research around conflict resulting from carnivore reintroductions and future research is required to fully understand the situation in the province in order to develop effective mitigation methods. An adaptive management approach to reintroductions is encouraged to improve monitoring and ensure reintroductions continue to meet their objectives. Furthermore, emerging consequences, such as human-wildlife conflict, and related mitigation strategies should be incorporated into management of reintroduced populations. Communities surrounding reintroduction sites should be educated on lifting baselines where conflict-causing species are recovering to ensure continued success of reintroduction undertakings. National management plans should be developed for all large carnivore species to improve the conservation value of small, fenced reserves that are typical of South African conservation, through a managed metapopulation approach. Management plans should include social, political, and economic factors that can influence the success of reintroductions and ultimate conservation outcomes.
- Full Text:
- Date Issued: 2017
Assessing the physical fitness level of children with intellectual disability in the Grahamstown region of the Eastern Cape, and subsequently designing, implementing and evaluating the efficacy of an exercise intervention
- Authors: Parsons, Samantha Lee
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/19723 , vital:22478
- Description: Background: Extensive research has addressed physical fitness as an agent in promoting health and well-being; however, there is little research on this topic for special populations, such as individuals with intellectual disability and even less relating to the South African context. Children with intellectual disability attending special need schools in disadvantaged communities in the Eastern Cape have lacked the opportunity to participate in structured physical education programs. Implementing a solution to this problem was seen to be a challenge, due to the lack of informative research and available data. Aims: The purpose of this research was two-fold; firstly, it aimed to identify the physical fitness levels of the intellectually disabled children in the Grahamstown region of the Eastern Cape province of South Africa; and secondly, it aimed to implement and evaluate the efficacy of an exercise intervention programme on physical fitness in a local school for children with intellectual disability. Phase 1: The descriptive study compared basic anthropometric as well as physical fitness measures from a sample of participants with intellectual disability (n=29) with a comparable sample of typically developed children (n=25). There were 15 males and 14 females in the intellectually disabled sample group, with an average age of 10.69 ± 1.26 years, and the typically developed sample had 13 males and 12 females, with an average age of 10.51 ± 0.74 years. The anthropometric measures included stature and mass; while the health-related physical fitness components included cardiorespiratory endurance, muscular endurance, strength, body composition, and flexibility; and the skill-related physical fitness components were balance, agility, speed, power, coordination and reaction time. The results revealed that the children with intellectual disability were significantly shorter in stature and lighter in mass (p <0.001) compared to their typically developed peers. Muscular endurance and strength, balance, speed, power, coordination and reaction time were poorer among those with intellectual disabilities (p <0.05). Cardiorespiratory endurance, flexibility and agility were similar between groups. Results of the correlation analyses determined significant (p <0.05) relationships between certain health-related and/or skill-related physical fitness components, which were instrumental for selecting measures for Phase 2. The physical fitness components that had the most significant (p <0.05) correlations were speed with five significant correlations, both muscular endurance and balance with six, coordination with seven, and power with eight significant correlations of the eleven physical fitness components. The comparative results, in conjunction with the correlations, determined that the most suitable physical fitness components to be implemented in the exercise intervention for Phase 2 were muscular endurance, balance, and power. Phase 2: The intervention study was a case-control study (intervention group: n = 16; control group: n = 15), whereby the intervention group was exposed to an 8-week multi-modal exercise intervention training muscular endurance, balance and power. Pre-and post-intervention measures were performed using the same eleven physical fitness tests as in Phase 1. The interaction effects and effect sizes were determined and the results showed significant improvements and large effect sizes for the intervention group’s performance of muscular endurance (p=0.026; d=0.617) and power (p<0.000; d=0.999), whereas no significant changes were found for balance. Furthermore, the exercise intervention also impacted the overall level of physical fitness, as significant changes were found for cardiorespiratory endurance (p<0.001; d=0.98), strength (p=0.021; d=0.654) and flexibility (p=0.032; d=586). In conclusion, the exercise intervention was effective for improving the intellectually disabled participants’ muscular endurance and power but not found effective for balance.
- Full Text:
- Date Issued: 2017
- Authors: Parsons, Samantha Lee
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/19723 , vital:22478
- Description: Background: Extensive research has addressed physical fitness as an agent in promoting health and well-being; however, there is little research on this topic for special populations, such as individuals with intellectual disability and even less relating to the South African context. Children with intellectual disability attending special need schools in disadvantaged communities in the Eastern Cape have lacked the opportunity to participate in structured physical education programs. Implementing a solution to this problem was seen to be a challenge, due to the lack of informative research and available data. Aims: The purpose of this research was two-fold; firstly, it aimed to identify the physical fitness levels of the intellectually disabled children in the Grahamstown region of the Eastern Cape province of South Africa; and secondly, it aimed to implement and evaluate the efficacy of an exercise intervention programme on physical fitness in a local school for children with intellectual disability. Phase 1: The descriptive study compared basic anthropometric as well as physical fitness measures from a sample of participants with intellectual disability (n=29) with a comparable sample of typically developed children (n=25). There were 15 males and 14 females in the intellectually disabled sample group, with an average age of 10.69 ± 1.26 years, and the typically developed sample had 13 males and 12 females, with an average age of 10.51 ± 0.74 years. The anthropometric measures included stature and mass; while the health-related physical fitness components included cardiorespiratory endurance, muscular endurance, strength, body composition, and flexibility; and the skill-related physical fitness components were balance, agility, speed, power, coordination and reaction time. The results revealed that the children with intellectual disability were significantly shorter in stature and lighter in mass (p <0.001) compared to their typically developed peers. Muscular endurance and strength, balance, speed, power, coordination and reaction time were poorer among those with intellectual disabilities (p <0.05). Cardiorespiratory endurance, flexibility and agility were similar between groups. Results of the correlation analyses determined significant (p <0.05) relationships between certain health-related and/or skill-related physical fitness components, which were instrumental for selecting measures for Phase 2. The physical fitness components that had the most significant (p <0.05) correlations were speed with five significant correlations, both muscular endurance and balance with six, coordination with seven, and power with eight significant correlations of the eleven physical fitness components. The comparative results, in conjunction with the correlations, determined that the most suitable physical fitness components to be implemented in the exercise intervention for Phase 2 were muscular endurance, balance, and power. Phase 2: The intervention study was a case-control study (intervention group: n = 16; control group: n = 15), whereby the intervention group was exposed to an 8-week multi-modal exercise intervention training muscular endurance, balance and power. Pre-and post-intervention measures were performed using the same eleven physical fitness tests as in Phase 1. The interaction effects and effect sizes were determined and the results showed significant improvements and large effect sizes for the intervention group’s performance of muscular endurance (p=0.026; d=0.617) and power (p<0.000; d=0.999), whereas no significant changes were found for balance. Furthermore, the exercise intervention also impacted the overall level of physical fitness, as significant changes were found for cardiorespiratory endurance (p<0.001; d=0.98), strength (p=0.021; d=0.654) and flexibility (p=0.032; d=586). In conclusion, the exercise intervention was effective for improving the intellectually disabled participants’ muscular endurance and power but not found effective for balance.
- Full Text:
- Date Issued: 2017
Assessing the potential impact of climate change in the south-eastern Great Escarpment, Southern Africa
- Authors: Bentley, Luke Kinross
- Date: 2017
- Subjects: Mountain plants -- Climatic factors -- Drakensberg Mountains , Mountain biodiversity -- Drakensberg Mountains , Climatic changes -- Drakensberg Mountains , Rain and rainfall -- Drakensberg Mountains , Plant diversity -- Climatic factors -- Drakensberg Mountains
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4657 , vital:20709
- Description: Rapid, anthropogenic climate change is a contemporary phenomenon which is threatening natural ecosystems. Mountains are globally important, housing high levels of plant and animal biodiversity, as well as being important suppliers of water with 50% of mountainous regions being essential for the provision of water to downstream inhabitants. Owing to their importance, an assessment of the historical, current and potential impacts of climate change on the south-eastern Great Escarpment encompassing South Africa and Lesotho is necessary and is the primary aim of this thesis. In order to assess the historical and current impacts of climate change, historical rainfall records were collected from 78 sites throughout the Eastern Cape. These records were used to determine rainfall trends and trends in the frequency of daily extreme events. Climate change projections predict increasing trends in summer and annual rainfall, and a marginal increase to a slightly decreasing trend in winter rainfall, depending on if statistically downscaled or dynamically downscaled projections are examined. Extreme events are also predicted to increase in frequency. Results showed trends which generally agree with the predictions, except for extreme events for which there was insufficient data to support the projections. This has implications for farmers in the area and validates the downscaled Regional Climate Models (RCMs) to be used for the predictive analysis determining the potential future impacts of climate change on plant species' distributions in the south-eastern Great Escarpment. In order to assess montane plant species to future climate predictions, occurrence records of 46 species were correlated to rainfall and temperature predictor variables and predictions for species richness and beta diversity were made for current and future climates. This predictive analysis used and compared two correlative species distribution modelling methods - one method used one correlating algorithm in a nuanced manner and the other method used five correlating algorithms in an ensemble. A trend of range restriction to higher elevations for the 46 species analysed was as expected from a warming climate. The nuanced, single algorithm modelling method produced less conservative models. The predicted trend of an elevational increase in montane vegetation in this region points to Lesotho and the Drakensberg highlands as being an important refugium for montane plant taxa of the southeastern Great Escarpment. The Maloti Drakensberg Transfrontier Conservation Area hence needs to be expanded and its mandate properly enforced to protect this region adequately.
- Full Text:
- Date Issued: 2017
- Authors: Bentley, Luke Kinross
- Date: 2017
- Subjects: Mountain plants -- Climatic factors -- Drakensberg Mountains , Mountain biodiversity -- Drakensberg Mountains , Climatic changes -- Drakensberg Mountains , Rain and rainfall -- Drakensberg Mountains , Plant diversity -- Climatic factors -- Drakensberg Mountains
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4657 , vital:20709
- Description: Rapid, anthropogenic climate change is a contemporary phenomenon which is threatening natural ecosystems. Mountains are globally important, housing high levels of plant and animal biodiversity, as well as being important suppliers of water with 50% of mountainous regions being essential for the provision of water to downstream inhabitants. Owing to their importance, an assessment of the historical, current and potential impacts of climate change on the south-eastern Great Escarpment encompassing South Africa and Lesotho is necessary and is the primary aim of this thesis. In order to assess the historical and current impacts of climate change, historical rainfall records were collected from 78 sites throughout the Eastern Cape. These records were used to determine rainfall trends and trends in the frequency of daily extreme events. Climate change projections predict increasing trends in summer and annual rainfall, and a marginal increase to a slightly decreasing trend in winter rainfall, depending on if statistically downscaled or dynamically downscaled projections are examined. Extreme events are also predicted to increase in frequency. Results showed trends which generally agree with the predictions, except for extreme events for which there was insufficient data to support the projections. This has implications for farmers in the area and validates the downscaled Regional Climate Models (RCMs) to be used for the predictive analysis determining the potential future impacts of climate change on plant species' distributions in the south-eastern Great Escarpment. In order to assess montane plant species to future climate predictions, occurrence records of 46 species were correlated to rainfall and temperature predictor variables and predictions for species richness and beta diversity were made for current and future climates. This predictive analysis used and compared two correlative species distribution modelling methods - one method used one correlating algorithm in a nuanced manner and the other method used five correlating algorithms in an ensemble. A trend of range restriction to higher elevations for the 46 species analysed was as expected from a warming climate. The nuanced, single algorithm modelling method produced less conservative models. The predicted trend of an elevational increase in montane vegetation in this region points to Lesotho and the Drakensberg highlands as being an important refugium for montane plant taxa of the southeastern Great Escarpment. The Maloti Drakensberg Transfrontier Conservation Area hence needs to be expanded and its mandate properly enforced to protect this region adequately.
- Full Text:
- Date Issued: 2017
Assessment of the Department of Rural Development and Agrarian Reform's maize cropping programme in the Eastern Cape
- Authors: Mqamelo, Luvolwethu
- Date: 2017
- Subjects: Cropping systems Crops and climate Crop yields
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9165 , vital:34288
- Description: The Department of Rural Development and Agrarian Reform maize cropping programme is one of the flagship projects that has been entrusted by the provincial government to tackle the social ills faced by the rural communities of the Eastern Cape Province. The programme is in line with a number of policies that strive to unlock the agricultural potential in inducing the much talked about radical economic transformation. This study was aimed at establishing if the outlay of the implementation processes and the outcomes of the maize cropping programme in Eastern Cape are sufficient to achieve the stated objectives. The study adopted a triangulation method to get comprehensive understanding of the programme and for accuracy and verification of the data collected. A pre-tested semistructured questionnaire was used to collect the demographics and socio-economic status of the respondents; technical skills and capabilities; implementation processes of the programme and the perceptions of the participants and key strategic role players in the maize cropping programme. A total of 120 respondents from DRDAR’s 2016/2017 financial year supported list and 9 key informants were sampled for the study. Furthermore, a gross margin analysis was used to establish the viability and the sustainability of the programme with and without DRDAR’s subsidies. For purposes of determining if there was any relation between the maize enterprise income and 13 independent variables, a multiple regression model was employed. The results of the study show that the programme is dominated by old and uneducated individuals with an average age of 60 years. The implementation processes are proving to be fairly progressed however, at a very limited scale. This includes provision of production inputs and mechanization services on time, formation of self-serving legal entities and unlocking the private sector investment. The gross margins generated from the programme have been observed to be non-viable and unsustainable. As a result, only 31% of the respondents were able to attain a gross margin equal or greater than the allocable costs of producing maize both under irrigation and dry land. The results of the regression model indicated that, only 5 of the 13 independent variables (household gender, marital status, years of participation, area planted and yield) were found to have a significant effect to the maize enterprise income. Overall, the DRDAR’s maize cropping programme has failed to meet its intended objectives. In addition, more than 70 percent of the programme participants produced for subsistence purposes and showed no desire to fully commercialise their operations.
- Full Text:
- Date Issued: 2017
- Authors: Mqamelo, Luvolwethu
- Date: 2017
- Subjects: Cropping systems Crops and climate Crop yields
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9165 , vital:34288
- Description: The Department of Rural Development and Agrarian Reform maize cropping programme is one of the flagship projects that has been entrusted by the provincial government to tackle the social ills faced by the rural communities of the Eastern Cape Province. The programme is in line with a number of policies that strive to unlock the agricultural potential in inducing the much talked about radical economic transformation. This study was aimed at establishing if the outlay of the implementation processes and the outcomes of the maize cropping programme in Eastern Cape are sufficient to achieve the stated objectives. The study adopted a triangulation method to get comprehensive understanding of the programme and for accuracy and verification of the data collected. A pre-tested semistructured questionnaire was used to collect the demographics and socio-economic status of the respondents; technical skills and capabilities; implementation processes of the programme and the perceptions of the participants and key strategic role players in the maize cropping programme. A total of 120 respondents from DRDAR’s 2016/2017 financial year supported list and 9 key informants were sampled for the study. Furthermore, a gross margin analysis was used to establish the viability and the sustainability of the programme with and without DRDAR’s subsidies. For purposes of determining if there was any relation between the maize enterprise income and 13 independent variables, a multiple regression model was employed. The results of the study show that the programme is dominated by old and uneducated individuals with an average age of 60 years. The implementation processes are proving to be fairly progressed however, at a very limited scale. This includes provision of production inputs and mechanization services on time, formation of self-serving legal entities and unlocking the private sector investment. The gross margins generated from the programme have been observed to be non-viable and unsustainable. As a result, only 31% of the respondents were able to attain a gross margin equal or greater than the allocable costs of producing maize both under irrigation and dry land. The results of the regression model indicated that, only 5 of the 13 independent variables (household gender, marital status, years of participation, area planted and yield) were found to have a significant effect to the maize enterprise income. Overall, the DRDAR’s maize cropping programme has failed to meet its intended objectives. In addition, more than 70 percent of the programme participants produced for subsistence purposes and showed no desire to fully commercialise their operations.
- Full Text:
- Date Issued: 2017
Assessment of the host properties of selected optically pure, racemic and achiral compounds
- Authors: Jooste, Daniel Victor
- Date: 2017
- Subjects: Organic compounds -- Synthesis Cyclic compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/18826 , vital:28735
- Description: This study focussed on the synthesis and host properties of four different broad categories of potential host compounds, namely optically active and racemic TADDOL [(4R,5R)-α,α,α’,α’-tetraphenyl-1,3-dioxolane-4,5-dimethanol] and derivatives, TTFOL [(3R,4R)-2,2,5,5-tetraphenyltetrahydrofuran-3,4-diol], amino acid ester-derived compounds [(S)-4-(2-amino-3-hydroxy-3,3-diphenylpropyl)phenol], and compounds derived from xanthone [9-amino-9-phenylxanthene and 1,2-bis(9-phenyl-9H-xanthen-9-yl)hydrazine]. The potential hosts were recrystallized from a range of possible guest species and the resulting solids analysed by 1H-NMR spectroscopy. If inclusion was observed by this technique, the complexes were analysed further using single crystal X-ray techniques and thermal experiments where possible. Competition studies were carried out where these were deemed appropriate. Optically active and racemic TADDOLs were synthesized using L-(+) and DL-(±)-tartaric acid respectively. Two further derivatives were prepared whereby the hydroxyl groups were substituted for chlorine and azide in order to assess the effect of this change on the inclusion ability. Both the optically active and racemic TADDOLs displayed similar host abilities, complexing with guests with 1:1 host:guest ratios as determined through 1H-NMR spectroscopy. Competition experiments showed that both forms of TADDOL exhibited similar guest preferences for pyridine and the methylpyridine isomers. Pyridine however was preferred over 2-methylpyridine by optically active TADDOL while the racemic form preferred this methyl-substituted guest over pyridine. Thermal analysis studies showed, surprisingly, that the TADDOL complexes containing pyridine had higher relative thermal stabilities than those containing the methylpyridines, whether the host was optically active or not. The preference order of these hosts for these guests can, therefore, not be used as a predictor for the relative thermal stability of the complexes. TTFOL was found to include only ethanol, 2-methylpyridine and dioxane from the range of guest species used; the complex with dioxane did not produce X-ray quality crystals. The L-tyrosine derivative, (S)-4-(2-amino-3-hydroxy-3,3-diphenylpropyl)phenol, was an ineffective host incapable of including any of the guests used in these experiments. The two xanthone derivatives, 9-amino-9-phenylxanthene and 1,2-bis(9-phenyl-9H-xanthen-9-yl)hydrazine each formed complexes with one guest species (morpholine and DMF, respectively).
- Full Text:
- Date Issued: 2017
- Authors: Jooste, Daniel Victor
- Date: 2017
- Subjects: Organic compounds -- Synthesis Cyclic compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/18826 , vital:28735
- Description: This study focussed on the synthesis and host properties of four different broad categories of potential host compounds, namely optically active and racemic TADDOL [(4R,5R)-α,α,α’,α’-tetraphenyl-1,3-dioxolane-4,5-dimethanol] and derivatives, TTFOL [(3R,4R)-2,2,5,5-tetraphenyltetrahydrofuran-3,4-diol], amino acid ester-derived compounds [(S)-4-(2-amino-3-hydroxy-3,3-diphenylpropyl)phenol], and compounds derived from xanthone [9-amino-9-phenylxanthene and 1,2-bis(9-phenyl-9H-xanthen-9-yl)hydrazine]. The potential hosts were recrystallized from a range of possible guest species and the resulting solids analysed by 1H-NMR spectroscopy. If inclusion was observed by this technique, the complexes were analysed further using single crystal X-ray techniques and thermal experiments where possible. Competition studies were carried out where these were deemed appropriate. Optically active and racemic TADDOLs were synthesized using L-(+) and DL-(±)-tartaric acid respectively. Two further derivatives were prepared whereby the hydroxyl groups were substituted for chlorine and azide in order to assess the effect of this change on the inclusion ability. Both the optically active and racemic TADDOLs displayed similar host abilities, complexing with guests with 1:1 host:guest ratios as determined through 1H-NMR spectroscopy. Competition experiments showed that both forms of TADDOL exhibited similar guest preferences for pyridine and the methylpyridine isomers. Pyridine however was preferred over 2-methylpyridine by optically active TADDOL while the racemic form preferred this methyl-substituted guest over pyridine. Thermal analysis studies showed, surprisingly, that the TADDOL complexes containing pyridine had higher relative thermal stabilities than those containing the methylpyridines, whether the host was optically active or not. The preference order of these hosts for these guests can, therefore, not be used as a predictor for the relative thermal stability of the complexes. TTFOL was found to include only ethanol, 2-methylpyridine and dioxane from the range of guest species used; the complex with dioxane did not produce X-ray quality crystals. The L-tyrosine derivative, (S)-4-(2-amino-3-hydroxy-3,3-diphenylpropyl)phenol, was an ineffective host incapable of including any of the guests used in these experiments. The two xanthone derivatives, 9-amino-9-phenylxanthene and 1,2-bis(9-phenyl-9H-xanthen-9-yl)hydrazine each formed complexes with one guest species (morpholine and DMF, respectively).
- Full Text:
- Date Issued: 2017
Automation of source-artefact classification
- Sebokolodi, Makhuduga Lerato Lydia
- Authors: Sebokolodi, Makhuduga Lerato Lydia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4920 , vital:20743
- Description: The high sensitivities of modern radio telescopes will enable the detection of very faint astrophysical sources in the distant Universe. However, these high sensitivities also imply that calibration artefacts, which were below the noise for less sensitive instruments, will emerge above the noise and may limit the dynamic range capabilities of these instruments. Detecting faint emission will require detection thresholds close to the noise and this may cause some of the artefacts to be incorrectly detected as real emission. The current approach is to manually remove the artefacts, or set high detection thresholds in order to avoid them. The former will not be possible given the large quantities of data that these instruments will produce, and the latter results in very shallow and incomplete catalogues. This work uses the negative detection method developed by Serra et al. (2012) to distinguish artefacts from astrophysical emission in radio images. We also present a technique that automates the identification of sources subject to severe direction-dependent (DD) effects and thus allows them to be flagged for DD calibration. The negative detection approach is shown to provide high reliability and high completeness catalogues for simulated data, as well as a JVLA observation of the 3C147 field (Mitra et al., 2015). We also show that our technique correctly identifies sources that require DD calibration for datasets from the KAT-7, LOFAR, JVLA and GMRT instruments.
- Full Text:
- Date Issued: 2017
- Authors: Sebokolodi, Makhuduga Lerato Lydia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4920 , vital:20743
- Description: The high sensitivities of modern radio telescopes will enable the detection of very faint astrophysical sources in the distant Universe. However, these high sensitivities also imply that calibration artefacts, which were below the noise for less sensitive instruments, will emerge above the noise and may limit the dynamic range capabilities of these instruments. Detecting faint emission will require detection thresholds close to the noise and this may cause some of the artefacts to be incorrectly detected as real emission. The current approach is to manually remove the artefacts, or set high detection thresholds in order to avoid them. The former will not be possible given the large quantities of data that these instruments will produce, and the latter results in very shallow and incomplete catalogues. This work uses the negative detection method developed by Serra et al. (2012) to distinguish artefacts from astrophysical emission in radio images. We also present a technique that automates the identification of sources subject to severe direction-dependent (DD) effects and thus allows them to be flagged for DD calibration. The negative detection approach is shown to provide high reliability and high completeness catalogues for simulated data, as well as a JVLA observation of the 3C147 field (Mitra et al., 2015). We also show that our technique correctly identifies sources that require DD calibration for datasets from the KAT-7, LOFAR, JVLA and GMRT instruments.
- Full Text:
- Date Issued: 2017
Benthic algal communities of shallow reefs in the Eastern Cape: availability of abalone habitat
- Authors: Witte, Andrew Dennis
- Date: 2017
- Subjects: Reef ecology -- South Africa -- Eastern Cape Abalone fisheries -- Habitat -- South Africa -- Eastern Cape , Algal communities -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12032 , vital:27021
- Description: Marine ranching has been identified as an alternative to traditional aquacultural rearing and growing organisms for consumption. In the Eastern Cape, abalone ranching is a new and experimental industry. The aims of the research were to: first develop a GIS model to assist management in site selection for abalone seeding; and secondly to develop and standardize the sampling methodology in order to ground truth the sites, and assist in the monitoring and habitat identification of abalone. The GIS model developed in Chapter 3 was created using an unsupervised classification and fuzzy logic approach. Both vector and raster datasets were utilized to represent 7 different layers. Predominantly satellite imagery was used to classify the different substrate groups according to pixel colour signatures. The basic process was to apply a fuzzy rule set (membership) to rasters which gave an output raster (Fuzzification). The membership output rasters were overlaid which creates a single model output. It was found that model accuracy increased significantly as more layers were overlaid, due to the high variability within each of the individual layers. Model ground-truthing showed a strong and significant correlation (r2 = 0.91; p < 0.001) between the model outputs and actual site suitability based on in situ evaluation. Chapter 4 describes the investigation towards the optimal sampling methods for abalone ranching habitat assessments. Both destructive sampling methods and imagery methods were considered as methods of data collection. The study also evaluated whether quadrat and transects were going to be suitable methods to assess sites, and what size or length respectively they should be to collect the appropriate data. Transect length showed great variation according to the factor assessed. A transect of 15 metres was found to be optimal. Abalone counts showed no significant (p = 0.1) change in the Coefficent of Variance (CV) for transect lengths greater than 15m, and had a mean of 0.2 abalone per metre. Quadrat size showed a significant difference in functional group richness between quadrat sizes of 0.0625m2, and 0.25m2 but no difference between 0.25m2 and 1m2 quadrats for both scape and photographic quadrats. It was also found that between 5 and 10 replicates (p = 0.08) represents the functional groups appropriately using quadrats and that a 0.25m2 quadrat is most suitable for sampling. Chapter 5 describes the benthic community structure of Cape Recife shallow water reefs. Using the standardized methodology previously mentioned, 45 sites were assessed to identify the community structure. These sites were grouped into 5 different groups influenced by depth and substrate, as well as functional group composition according to a Wards classification. The community structure showed that depth and substrate play a significant role (p < 0.05) in the community type. There is also a significant relationship (p < 0.05) between complexity, rugosity, abalone presence and substrate. During this study the basic protocols for site selection and benthic community monitoring have been developed to support the abalone ranching initiative in the Cape Recife area. It has also provided a baseline of the benthic community in the ranching concession area which will be used as a benchmark for future monitoring efforts. The site selection, sampling, and monitoring methods developed during the course of this work have now been rolled out as Standard Operating Procedures for the ranching programme in this area.
- Full Text:
- Date Issued: 2017
- Authors: Witte, Andrew Dennis
- Date: 2017
- Subjects: Reef ecology -- South Africa -- Eastern Cape Abalone fisheries -- Habitat -- South Africa -- Eastern Cape , Algal communities -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/12032 , vital:27021
- Description: Marine ranching has been identified as an alternative to traditional aquacultural rearing and growing organisms for consumption. In the Eastern Cape, abalone ranching is a new and experimental industry. The aims of the research were to: first develop a GIS model to assist management in site selection for abalone seeding; and secondly to develop and standardize the sampling methodology in order to ground truth the sites, and assist in the monitoring and habitat identification of abalone. The GIS model developed in Chapter 3 was created using an unsupervised classification and fuzzy logic approach. Both vector and raster datasets were utilized to represent 7 different layers. Predominantly satellite imagery was used to classify the different substrate groups according to pixel colour signatures. The basic process was to apply a fuzzy rule set (membership) to rasters which gave an output raster (Fuzzification). The membership output rasters were overlaid which creates a single model output. It was found that model accuracy increased significantly as more layers were overlaid, due to the high variability within each of the individual layers. Model ground-truthing showed a strong and significant correlation (r2 = 0.91; p < 0.001) between the model outputs and actual site suitability based on in situ evaluation. Chapter 4 describes the investigation towards the optimal sampling methods for abalone ranching habitat assessments. Both destructive sampling methods and imagery methods were considered as methods of data collection. The study also evaluated whether quadrat and transects were going to be suitable methods to assess sites, and what size or length respectively they should be to collect the appropriate data. Transect length showed great variation according to the factor assessed. A transect of 15 metres was found to be optimal. Abalone counts showed no significant (p = 0.1) change in the Coefficent of Variance (CV) for transect lengths greater than 15m, and had a mean of 0.2 abalone per metre. Quadrat size showed a significant difference in functional group richness between quadrat sizes of 0.0625m2, and 0.25m2 but no difference between 0.25m2 and 1m2 quadrats for both scape and photographic quadrats. It was also found that between 5 and 10 replicates (p = 0.08) represents the functional groups appropriately using quadrats and that a 0.25m2 quadrat is most suitable for sampling. Chapter 5 describes the benthic community structure of Cape Recife shallow water reefs. Using the standardized methodology previously mentioned, 45 sites were assessed to identify the community structure. These sites were grouped into 5 different groups influenced by depth and substrate, as well as functional group composition according to a Wards classification. The community structure showed that depth and substrate play a significant role (p < 0.05) in the community type. There is also a significant relationship (p < 0.05) between complexity, rugosity, abalone presence and substrate. During this study the basic protocols for site selection and benthic community monitoring have been developed to support the abalone ranching initiative in the Cape Recife area. It has also provided a baseline of the benthic community in the ranching concession area which will be used as a benchmark for future monitoring efforts. The site selection, sampling, and monitoring methods developed during the course of this work have now been rolled out as Standard Operating Procedures for the ranching programme in this area.
- Full Text:
- Date Issued: 2017
Biogeomorphic aspects of lichen colonisation in part of western Dronning Maud Land, Antarctica
- Authors: Ayres, Gabrielle Alexzena
- Date: 2017
- Subjects: Lichen communities -- Queen Maud Land , Lichens -- Ecology -- Queen Maud Land , Polar regions , Ecology -- Polar regions , Antarctica , Ecology -- Antarctica
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/19713 , vital:22477
- Description: Ice-free regions in Antarctica provide natural laboratories for investigating and modelling change in landscapes and ecosystems. The terrestrial ecosystems in western Dronning Maud Land are potentially critical to improve current understanding of polar ecosystems, however, they remain poorly represented and under-protected. Lichen habitats were used to elucidate geomorphic-biological feedbacks that shape the landscape’s topography and biodiversity, which in turn promote environmental heterogeneity. Environmental parameters acting on two landforms were measured to determine the colonisation and growth of lichens in niche habitats. The habitats were identified and characterised, and topographic heterogeneity was found to control lichen colonisation. Micro-topographical niches provide the most stable environments for colonisation, and are preferred habitats. Lichen-habitat interactions were species specific, and closely related to insolation and moisture availability. The bidirectional relationships between rock weathering and lichen colonisation was ascertained. Results showed that lichens are good indicators of landform heterogeneity, but also promote landform heterogeneity. Given the habitat preferences of specific lichen species, they provide proxy to evaluating environmental responses, especially environmental change. The findings of this research are to be used as baseline data for future studies exploring ecosystem development in emerging landforms.
- Full Text:
- Date Issued: 2017
- Authors: Ayres, Gabrielle Alexzena
- Date: 2017
- Subjects: Lichen communities -- Queen Maud Land , Lichens -- Ecology -- Queen Maud Land , Polar regions , Ecology -- Polar regions , Antarctica , Ecology -- Antarctica
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/19713 , vital:22477
- Description: Ice-free regions in Antarctica provide natural laboratories for investigating and modelling change in landscapes and ecosystems. The terrestrial ecosystems in western Dronning Maud Land are potentially critical to improve current understanding of polar ecosystems, however, they remain poorly represented and under-protected. Lichen habitats were used to elucidate geomorphic-biological feedbacks that shape the landscape’s topography and biodiversity, which in turn promote environmental heterogeneity. Environmental parameters acting on two landforms were measured to determine the colonisation and growth of lichens in niche habitats. The habitats were identified and characterised, and topographic heterogeneity was found to control lichen colonisation. Micro-topographical niches provide the most stable environments for colonisation, and are preferred habitats. Lichen-habitat interactions were species specific, and closely related to insolation and moisture availability. The bidirectional relationships between rock weathering and lichen colonisation was ascertained. Results showed that lichens are good indicators of landform heterogeneity, but also promote landform heterogeneity. Given the habitat preferences of specific lichen species, they provide proxy to evaluating environmental responses, especially environmental change. The findings of this research are to be used as baseline data for future studies exploring ecosystem development in emerging landforms.
- Full Text:
- Date Issued: 2017
Biomass yield, nutrient content and silage quality of three forage sorghum (Sorghum Bicolour (L.) varieties grown in the semi-arid region of Eastern Cape Province, South Africa
- Gwantshu, Vuyolwethu Hamilton
- Authors: Gwantshu, Vuyolwethu Hamilton
- Date: 2017
- Subjects: Sorghum -- Varieties -- South Africa -- Eastern Cape Sorghum -- South Africa -- Eastern Cape Forage
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9545 , vital:34368
- Description: The study determined the biomass yield, nutrient content and silage quality of forage sorghum varieties. Three varieties were used (King, PAN 868, and PAN 888), in a randomized complete block design (RCBD) with three blocks and three replicates per treatment at the University of Fort Hare research farm. The research study was conducted during the 2016/2017 growing season. The forages were harvested at flowering stage of growth. Biomass yields of fresh forage and dry matter yield were measured. Sub-samples were then dried, milled and analysed for nutrient content. Furthermore, the forage sorghum was ensiled and the silage was analysed for fermentation parameters and nutrient content. The fresh and dry matter biomass yield showed no significant differences (P>0.05) among the varieties. The highest fresh biomass yields were observed in PAN 888 variety was 13400 kg/ha, King had 12600 kg/ha and PAN 868 had 12600 kg/ha. The dry matter yield observed in PAN 888 was 4300.00 DM kg/ha, PAN 868 had 3633.33 DM kg/ha and King yielded 3533.33 DM kg/ha. The different sorghum varieties showed a significant (P<0.01) difference in some chemical composition parameters namely DM, NDIN and NSC. The different sorghum varieties had significant difference (P<0.01) in the silage fermentation parameters of pH, starch and lactic acid. The sorghum silage varieties were significantly (P<0.01) different in the starch fermentation with values of 0.001percent. The sorghum silage varieties were significant different for fermentation of lactic acid with values ranging from 1.99 to 2.62percent. However, PAN 868 and PAN 888 were not different from each other. Similarly, all varieties were different (P<0.05) in the pH with values ranging from 4.16 to 4.53. There were no significant (P>0.05) differences in CP, Fat, NDF, ADF, Hemicellulose, Ash, and ADIN content of the silages. The mineral composition (macro and micro) of the silage were not significantly (P>0.05) different among the varieties. In conclusion, the dry matter production and nutrient content of the three forage sorghum varieties were not significantly different. The silage fermentation quality showed significant (P<0.05) differences among the three sorghum varieties. Therefore, according to the results of this study PAN 888 is the recommended variety to grow in the semi-arid region of the Eastern Cape.
- Full Text:
- Date Issued: 2017
- Authors: Gwantshu, Vuyolwethu Hamilton
- Date: 2017
- Subjects: Sorghum -- Varieties -- South Africa -- Eastern Cape Sorghum -- South Africa -- Eastern Cape Forage
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9545 , vital:34368
- Description: The study determined the biomass yield, nutrient content and silage quality of forage sorghum varieties. Three varieties were used (King, PAN 868, and PAN 888), in a randomized complete block design (RCBD) with three blocks and three replicates per treatment at the University of Fort Hare research farm. The research study was conducted during the 2016/2017 growing season. The forages were harvested at flowering stage of growth. Biomass yields of fresh forage and dry matter yield were measured. Sub-samples were then dried, milled and analysed for nutrient content. Furthermore, the forage sorghum was ensiled and the silage was analysed for fermentation parameters and nutrient content. The fresh and dry matter biomass yield showed no significant differences (P>0.05) among the varieties. The highest fresh biomass yields were observed in PAN 888 variety was 13400 kg/ha, King had 12600 kg/ha and PAN 868 had 12600 kg/ha. The dry matter yield observed in PAN 888 was 4300.00 DM kg/ha, PAN 868 had 3633.33 DM kg/ha and King yielded 3533.33 DM kg/ha. The different sorghum varieties showed a significant (P<0.01) difference in some chemical composition parameters namely DM, NDIN and NSC. The different sorghum varieties had significant difference (P<0.01) in the silage fermentation parameters of pH, starch and lactic acid. The sorghum silage varieties were significantly (P<0.01) different in the starch fermentation with values of 0.001percent. The sorghum silage varieties were significant different for fermentation of lactic acid with values ranging from 1.99 to 2.62percent. However, PAN 868 and PAN 888 were not different from each other. Similarly, all varieties were different (P<0.05) in the pH with values ranging from 4.16 to 4.53. There were no significant (P>0.05) differences in CP, Fat, NDF, ADF, Hemicellulose, Ash, and ADIN content of the silages. The mineral composition (macro and micro) of the silage were not significantly (P>0.05) different among the varieties. In conclusion, the dry matter production and nutrient content of the three forage sorghum varieties were not significantly different. The silage fermentation quality showed significant (P<0.05) differences among the three sorghum varieties. Therefore, according to the results of this study PAN 888 is the recommended variety to grow in the semi-arid region of the Eastern Cape.
- Full Text:
- Date Issued: 2017
Browsing as a demographic bottleneck in a semi-arid savanna: the effect of size and age on compensatory responses of Vachellia karroo seedlings after simulated herbivory
- Authors: Perumal, Lavinia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4899 , vital:20741
- Description: Savannas are characterised by a continuous grass layer with scattered trees at varying densities. This vegetation structure is determined by several interacting factors, including fire, herbivory, resource competition and atmospheric CO2 concentration. The preservation of savanna biomes is important and a shift towards a woody biome threatens savanna globally. Bush encroachment which describes the shift towards domination of savannas by C3 woody plants, is especially acute in southern Africa. In semi-arid rangelands, encroachment progresses to dense thickets dominated by thorny and unpalatable bushes and trees. There is evidence that bush encroachment is driven by a reduction in fire and browsing events as well as their interaction. Despite browsing having strong effects on African savannas its isolated role in maintaining tree-grass coexistence has not received as much attention as the role of fire. Therefore the overall aim of this study was to examine the effects of browsing on seedlings of a commonly encroaching species, Vachellia karroo. Browsing was hypothesized to be a demographic release bottleneck for bush encroachment in a semiarid (MAP ~550mm) savanna in the Eastern Cape of South Africa, where fire has been historically rare. In a single study I explored the fate of V. karroo seedlings (less than a year old) following browsing in sub canopy and inter canopy microhabitats. Additionally, I explored how the fate of a seedling changed under high and low tree cover. Firstly, I investigated the type, intensity and frequency of herbivory, from both small and large herbivores, which seedlings were subjected to. Results revealed that browsing was severe and frequent with the majority of seedlings browsed more than twice over a 12 month period. Large browsers such as kudu and impala caused high seedling mortality (46%) while smaller browsers such as invertebrates were more effective at suppressing growth. Microhabitat had little impact on seedling survival, but significantly influenced plant compensatory growth. Reduced seedling growth following browsing was observed in the sub-canopy in comparison to seedling growth in full sunlight in the intercanopy, suggesting V.karroo may be shade intolerant. Secondly, the effect of tree cover on browsed seedlings was determined by quantifying browsing frequency and intensity at high and low tree cover. No differences in browsing intensity and frequency were observed between high and low tree cover. However, high tree cover due to bush encroachment limited seedling above ground growth. The aim of the second study was to investigate how V.karroo survival and growth were influenced by its age and size following simulated browsing. I explored this aim through field and greenhouse experiments. I was particularly interested in testing how plant sensitivity to varying defoliation intensities of repeated browsing varied with plant age (known ages of 6, 12, 16 and 30 weeks). There were large differences in mortality between the different age groups. Furthermore, age interacted with repeated browsing and negatively influenced seedling survival and regrowth. Older seedlings (16 and 30 week old) had greater survival and higher browsing frequencies resulted in greater mortality and reduced growth. The threshold age after which seedlings become more tolerant to herbivory occurs at an age of 28 weeks. Seedlings less than six weeks old experiencing intense (100 % defoliation)browsing had a very low probability (33%) of survival following just a single defoliation. Interestingly, all 16 week old seedlings regrew most of their foliage following a moderate (50%) defoliation with some plants overcompensating for leaf loss. The field study revealed two distinct demographic stages based on age and size (seedlings< 9 mm and saplings >9 mm in stem basal diameter (SBD)). Browsing had a strong negative effect on seedlings, resulting in reduced investment in leaf biomass. These findings suggest plant size and age can be used as robust predictors of a plants vulnerability to browsing. An increase in tree cover requires successful transitions of seedlings to saplings (also known as release). The results of this study suggest that in semi-arid savannas, browsing can impact tree cover through imposing a release bottleneck for tree seedlings and to lesser extent saplings. By limiting tree growth plants are kept in a disturbance trap and will therefore be exposed to not only browsers but fire. These findings also have important implications for tree-grass coexistence dynamics, suggesting that specific size and browsing thresholds should be considered in savanna management.
- Full Text:
- Date Issued: 2017
- Authors: Perumal, Lavinia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4899 , vital:20741
- Description: Savannas are characterised by a continuous grass layer with scattered trees at varying densities. This vegetation structure is determined by several interacting factors, including fire, herbivory, resource competition and atmospheric CO2 concentration. The preservation of savanna biomes is important and a shift towards a woody biome threatens savanna globally. Bush encroachment which describes the shift towards domination of savannas by C3 woody plants, is especially acute in southern Africa. In semi-arid rangelands, encroachment progresses to dense thickets dominated by thorny and unpalatable bushes and trees. There is evidence that bush encroachment is driven by a reduction in fire and browsing events as well as their interaction. Despite browsing having strong effects on African savannas its isolated role in maintaining tree-grass coexistence has not received as much attention as the role of fire. Therefore the overall aim of this study was to examine the effects of browsing on seedlings of a commonly encroaching species, Vachellia karroo. Browsing was hypothesized to be a demographic release bottleneck for bush encroachment in a semiarid (MAP ~550mm) savanna in the Eastern Cape of South Africa, where fire has been historically rare. In a single study I explored the fate of V. karroo seedlings (less than a year old) following browsing in sub canopy and inter canopy microhabitats. Additionally, I explored how the fate of a seedling changed under high and low tree cover. Firstly, I investigated the type, intensity and frequency of herbivory, from both small and large herbivores, which seedlings were subjected to. Results revealed that browsing was severe and frequent with the majority of seedlings browsed more than twice over a 12 month period. Large browsers such as kudu and impala caused high seedling mortality (46%) while smaller browsers such as invertebrates were more effective at suppressing growth. Microhabitat had little impact on seedling survival, but significantly influenced plant compensatory growth. Reduced seedling growth following browsing was observed in the sub-canopy in comparison to seedling growth in full sunlight in the intercanopy, suggesting V.karroo may be shade intolerant. Secondly, the effect of tree cover on browsed seedlings was determined by quantifying browsing frequency and intensity at high and low tree cover. No differences in browsing intensity and frequency were observed between high and low tree cover. However, high tree cover due to bush encroachment limited seedling above ground growth. The aim of the second study was to investigate how V.karroo survival and growth were influenced by its age and size following simulated browsing. I explored this aim through field and greenhouse experiments. I was particularly interested in testing how plant sensitivity to varying defoliation intensities of repeated browsing varied with plant age (known ages of 6, 12, 16 and 30 weeks). There were large differences in mortality between the different age groups. Furthermore, age interacted with repeated browsing and negatively influenced seedling survival and regrowth. Older seedlings (16 and 30 week old) had greater survival and higher browsing frequencies resulted in greater mortality and reduced growth. The threshold age after which seedlings become more tolerant to herbivory occurs at an age of 28 weeks. Seedlings less than six weeks old experiencing intense (100 % defoliation)browsing had a very low probability (33%) of survival following just a single defoliation. Interestingly, all 16 week old seedlings regrew most of their foliage following a moderate (50%) defoliation with some plants overcompensating for leaf loss. The field study revealed two distinct demographic stages based on age and size (seedlings< 9 mm and saplings >9 mm in stem basal diameter (SBD)). Browsing had a strong negative effect on seedlings, resulting in reduced investment in leaf biomass. These findings suggest plant size and age can be used as robust predictors of a plants vulnerability to browsing. An increase in tree cover requires successful transitions of seedlings to saplings (also known as release). The results of this study suggest that in semi-arid savannas, browsing can impact tree cover through imposing a release bottleneck for tree seedlings and to lesser extent saplings. By limiting tree growth plants are kept in a disturbance trap and will therefore be exposed to not only browsers but fire. These findings also have important implications for tree-grass coexistence dynamics, suggesting that specific size and browsing thresholds should be considered in savanna management.
- Full Text:
- Date Issued: 2017
Calibration and imaging with variable radio sources
- Authors: Mbou Sob, Ulrich Armel
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/37977 , vital:24721
- Description: Calibration of radio interferometric data is one of the most important steps that are required to produce high dynamic range radio maps with high fidelity. However, naive calibration (inaccurate knowledge of the sky and instruments) leads to the formation of calibration artefacts: the generation of spurious sources and the deformations in the structure of extended sources. A particular class of calibration artefacts, called ghost sources, which results from calibration with incomplete sky models has been extensively studied by Grobler et al. (2014, 2016) and Wijnholds et al. (2016). They developed a framework which can be used to predict the fluxes and positions of ghost sources. This work uses the approach initiated by these authors to study the calibration artefacts and ghost sources that are produced when variable sources are not considered in sky models during calibration. This work investigates both long-term and short-term variability and uses the root mean square (rms) and power spectrum as metrics to evaluate the “quality” of the residual visibilities obtained through calibration. We show that the overestimation and underestimation of source flux density during calibration produces similar but symmetrically opposite results. We show that calibration artefacts from sky model errors are not normally distributed. This prevents them from being removed by employing advanced techniques, such as stacking. The power spectrums measured from the residuals with a variable source was significantly higher than those from residuals without a variable source. This implies advanced calibration techniques and sky model completeness will be required for studies such as probing the Epoch of Reoinization, where we seek to detect faint signals below thermal noise.
- Full Text:
- Date Issued: 2017
- Authors: Mbou Sob, Ulrich Armel
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/37977 , vital:24721
- Description: Calibration of radio interferometric data is one of the most important steps that are required to produce high dynamic range radio maps with high fidelity. However, naive calibration (inaccurate knowledge of the sky and instruments) leads to the formation of calibration artefacts: the generation of spurious sources and the deformations in the structure of extended sources. A particular class of calibration artefacts, called ghost sources, which results from calibration with incomplete sky models has been extensively studied by Grobler et al. (2014, 2016) and Wijnholds et al. (2016). They developed a framework which can be used to predict the fluxes and positions of ghost sources. This work uses the approach initiated by these authors to study the calibration artefacts and ghost sources that are produced when variable sources are not considered in sky models during calibration. This work investigates both long-term and short-term variability and uses the root mean square (rms) and power spectrum as metrics to evaluate the “quality” of the residual visibilities obtained through calibration. We show that the overestimation and underestimation of source flux density during calibration produces similar but symmetrically opposite results. We show that calibration artefacts from sky model errors are not normally distributed. This prevents them from being removed by employing advanced techniques, such as stacking. The power spectrums measured from the residuals with a variable source was significantly higher than those from residuals without a variable source. This implies advanced calibration techniques and sky model completeness will be required for studies such as probing the Epoch of Reoinization, where we seek to detect faint signals below thermal noise.
- Full Text:
- Date Issued: 2017
Cardiovascular disease risk in Black and Caucasian females: an Eastern Cape sample
- Authors: Remsing, Sandra Claudia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/40737 , vital:25021
- Description: The purpose of this study was to investigate cardiovascular disease risk in Black and Caucasian urban working females of the Makana region of the Eastern Cape. One- hundred and sixty six age-matched urban-working individuals (Black n = 88; Caucasian n = 78) voluntarily participated in this cross-sectional study. Cardiovascular disease risk was assessed in four categories: 1) obesity, classified as ‘morphological risk’, 2) blood pressure, classified as ‘cardiovascular risk’, 3) diet, physical activity, smoking, and alcohol consumption, classified as ‘lifestyle risk’, and 4) education and income, classified as ‘socioeconomic factors’. Results showed that Black females were significantly (p<0.01) heavier than Caucasian females and categorized as ‘obese’ according to BMI classifications (31.19 ± 8.09 kg.m2 and 25.90 ±4.67 kg.m2, respectively). Black females also presented with significantly (p<0.01) higher waist circumferences and waist-to-stature ratios, further confirming the obesity prevalence in this group. When accounting for those who were on anti-hypertensive mediation, Black females additionally presented with significantly (p<0.05) higher blood pressure, categorizing them as ‘pre-hypertensive’ (MAP = 98 ± 16 mmHg and 85 ± 11 mmHg, respectively). These results therefore placed Black females at increased cardiovascular disease risk compared to Caucasian females. With respect to lifestyle factors, Black females consumed significantly (p<0.05) more kilojoules carbohydrates, and total sugar than Caucasian females, and expended more physical activity MET- minutes per week (2688.86 ± 1486.56 MET-minutes and 1828.27 ± 2238.10 MET- minutes, respectively). However, reduced validity of physical activity data as well as poor dietary recall limited the interpretations of these findings. In addition, despite significant differences between smoking and alcohol consumption between groups, the majority of both Black and Caucasian females reported being non-smokers and consumed alcohol minimally. Thus, these were concluded to be unlikely contributors to cardiovascular disease risk in these samples. Socioeconomic results nevertheless expectedly showed that Black females were significantly (p<0.05) less educated, and subsequently earned lower incomes. It was thus concluded that this may be a likely contributor to higher cardiovascular risk in Black females. Future recommendations include the incorporation of exercise intensity measures as well as objective measures of habitual diet. This is in order to get a clearer understanding of the impact of these lifestyle factors on cardiovascular disease risk.
- Full Text:
- Date Issued: 2017
- Authors: Remsing, Sandra Claudia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/40737 , vital:25021
- Description: The purpose of this study was to investigate cardiovascular disease risk in Black and Caucasian urban working females of the Makana region of the Eastern Cape. One- hundred and sixty six age-matched urban-working individuals (Black n = 88; Caucasian n = 78) voluntarily participated in this cross-sectional study. Cardiovascular disease risk was assessed in four categories: 1) obesity, classified as ‘morphological risk’, 2) blood pressure, classified as ‘cardiovascular risk’, 3) diet, physical activity, smoking, and alcohol consumption, classified as ‘lifestyle risk’, and 4) education and income, classified as ‘socioeconomic factors’. Results showed that Black females were significantly (p<0.01) heavier than Caucasian females and categorized as ‘obese’ according to BMI classifications (31.19 ± 8.09 kg.m2 and 25.90 ±4.67 kg.m2, respectively). Black females also presented with significantly (p<0.01) higher waist circumferences and waist-to-stature ratios, further confirming the obesity prevalence in this group. When accounting for those who were on anti-hypertensive mediation, Black females additionally presented with significantly (p<0.05) higher blood pressure, categorizing them as ‘pre-hypertensive’ (MAP = 98 ± 16 mmHg and 85 ± 11 mmHg, respectively). These results therefore placed Black females at increased cardiovascular disease risk compared to Caucasian females. With respect to lifestyle factors, Black females consumed significantly (p<0.05) more kilojoules carbohydrates, and total sugar than Caucasian females, and expended more physical activity MET- minutes per week (2688.86 ± 1486.56 MET-minutes and 1828.27 ± 2238.10 MET- minutes, respectively). However, reduced validity of physical activity data as well as poor dietary recall limited the interpretations of these findings. In addition, despite significant differences between smoking and alcohol consumption between groups, the majority of both Black and Caucasian females reported being non-smokers and consumed alcohol minimally. Thus, these were concluded to be unlikely contributors to cardiovascular disease risk in these samples. Socioeconomic results nevertheless expectedly showed that Black females were significantly (p<0.05) less educated, and subsequently earned lower incomes. It was thus concluded that this may be a likely contributor to higher cardiovascular risk in Black females. Future recommendations include the incorporation of exercise intensity measures as well as objective measures of habitual diet. This is in order to get a clearer understanding of the impact of these lifestyle factors on cardiovascular disease risk.
- Full Text:
- Date Issued: 2017