Inhibitor search and variant analysis of Acetylcholinesterase
- Authors: Ras, Harnaud
- Date: 2021-04
- Subjects: Acetylcholinesterase , Alzheimer's disease , Acetylcholinesterase -- Inhibitors , Alzheimer's disease -- Chemotherapy , Cerebrovascular disease -- Treatment , Molecular mechanics Poisson–Boltzmann surface area (MM-PBSA)
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178191 , vital:42919
- Description: Acetylcholinesterase (AChE) inhibition is used to treat Alzheimer's disease by increasing the availability of acetylcholine to carry nerve signals in the brain. The response to this treatment varies widely, which may be due to altered affnity to the current drugs caused by genetic variation. Various negative side-effects limit their use. As this is one of the only available therapeutic drug targets to treat Alzheimer's disease, decreasing the negative effects is of great importance. AChE is involved in biological processes that occur after acute ischemic stroke. Stroke is the third leading cause of death worldwide, and 87% of all stroke cases belong to ischemic stroke. AchEI (cholinesterase inhibitors) have been suggested to have properties that lower the risk of stroke. AChE is one of 15 verified drug targets under study for treatment of stroke. In addition to Alzheimer's disease and stroke, Lewy body disease (LBD) may be treated using cholinesterase inhibitors. The goals of this study are to find inhibitors that can potentially be used to treat Alzheimer's disease and/or stroke and to investigate variants which may affect protein dynamics and function. Two variants were analyzed, P247L and T229S. Molecular simulation of the P247L variant resulted in a disruption in protein dynamics in comparison to the wildtype. A total of 5728 molecules were screened and 10 nanosecond simulations were used to narrow down the set of compounds. The four best performing molecules were simulated for 10 nanoseconds. MM-PBSA was performed to identify molecules with high binding free energies. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Ras, Harnaud
- Date: 2021-04
- Subjects: Acetylcholinesterase , Alzheimer's disease , Acetylcholinesterase -- Inhibitors , Alzheimer's disease -- Chemotherapy , Cerebrovascular disease -- Treatment , Molecular mechanics Poisson–Boltzmann surface area (MM-PBSA)
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178191 , vital:42919
- Description: Acetylcholinesterase (AChE) inhibition is used to treat Alzheimer's disease by increasing the availability of acetylcholine to carry nerve signals in the brain. The response to this treatment varies widely, which may be due to altered affnity to the current drugs caused by genetic variation. Various negative side-effects limit their use. As this is one of the only available therapeutic drug targets to treat Alzheimer's disease, decreasing the negative effects is of great importance. AChE is involved in biological processes that occur after acute ischemic stroke. Stroke is the third leading cause of death worldwide, and 87% of all stroke cases belong to ischemic stroke. AchEI (cholinesterase inhibitors) have been suggested to have properties that lower the risk of stroke. AChE is one of 15 verified drug targets under study for treatment of stroke. In addition to Alzheimer's disease and stroke, Lewy body disease (LBD) may be treated using cholinesterase inhibitors. The goals of this study are to find inhibitors that can potentially be used to treat Alzheimer's disease and/or stroke and to investigate variants which may affect protein dynamics and function. Two variants were analyzed, P247L and T229S. Molecular simulation of the P247L variant resulted in a disruption in protein dynamics in comparison to the wildtype. A total of 5728 molecules were screened and 10 nanosecond simulations were used to narrow down the set of compounds. The four best performing molecules were simulated for 10 nanoseconds. MM-PBSA was performed to identify molecules with high binding free energies. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
Application of In Vitro Release Testing (IVRT) and a dermatopharmacokinetic approach (tape stripping) for the assessment of Metronidazole topical formulations
- Rath, Seeprarani Prabirkumar
- Authors: Rath, Seeprarani Prabirkumar
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/164617 , vital:41148 , doi:10.21504/10962/164617
- Description: Thesis (PhD)--Rhodes University, Faculty of Pharmacy, Pharmaceutics, 2020
- Full Text:
- Date Issued: 2020
- Authors: Rath, Seeprarani Prabirkumar
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/164617 , vital:41148 , doi:10.21504/10962/164617
- Description: Thesis (PhD)--Rhodes University, Faculty of Pharmacy, Pharmaceutics, 2020
- Full Text:
- Date Issued: 2020
CO2-induced woody thickening depends strongly on interacting abiotic and biotic factors
- Authors: Raubenheimer, Sarah Lynn
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/164646 , vital:41151 , doi:10.21504/10962/164646
- Description: Thesis (PhD)--Rhodes University, Faculty of Science, Botany, 2020
- Full Text:
- Date Issued: 2020
- Authors: Raubenheimer, Sarah Lynn
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/164646 , vital:41151 , doi:10.21504/10962/164646
- Description: Thesis (PhD)--Rhodes University, Faculty of Science, Botany, 2020
- Full Text:
- Date Issued: 2020
Ritualised discourse practices of feedback in a university foundation programme: a critical investigation
- Authors: Richardson, Amy
- Date: 2012
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Masters , MA
- Identifier: http://hdl.handle.net/10962/164955 , vital:41187
- Description: In order for students to become true members of academic communities of practice they need epistemological access, including guidance on central institutional knowledge-producing processes and mastery of key academic literacy practices. A powerful source of guidance is marker feedback. Drawing on key insights from the New Literacy Studies and taking up the mandate of Critical Ethnography to improve the status quo, this thesis reports on the feedback practices in a university foundation programme. The findings are based on three micro-case studies compiled and analysed by means of methods drawn from Ethnography, Sociolinguistics and Critical Analysis in conjunction with an expanded, multimodal, APPRAISAL analysis, including adjusted categories and the author’s own feedback typologies. Two major arguments emerge: the feedback provided amounts to a set of ritualised discourse practices and its effects can be likened to the product of the children’s game of Head-body-tail. Consequently, feedback conventions are opaque and, potentially, impede epistemological access. They further entrench five sets of ideologies: (1) Students must master basic English literacy before they are coached in more complex issues such as argumentation; an assumption which leads to differential socialisation. (2) There is a single set of literacy practices that is rewarded. (3) Students have different levels of authorial authority depending on their language abilities. (4) ‘Middle students’ may benefit the most from feedback. (5) Specific comments are preferred over general ones. Analysis of feedback, furthermore, shows that markers’ frames of reference shape their pedagogy and that draft and final versions of work may be framed differently by markers. These findings require a response and, in order to facilitate epistemological access, suggestions are made for improved marker training based on the problematisation of the ritual involved in marking students’ work in this university foundation programme. , Thesis (MA)--Rhodes University, Faculty of Humanities, Linguistics, 2012
- Full Text:
- Date Issued: 2012
- Authors: Richardson, Amy
- Date: 2012
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Masters , MA
- Identifier: http://hdl.handle.net/10962/164955 , vital:41187
- Description: In order for students to become true members of academic communities of practice they need epistemological access, including guidance on central institutional knowledge-producing processes and mastery of key academic literacy practices. A powerful source of guidance is marker feedback. Drawing on key insights from the New Literacy Studies and taking up the mandate of Critical Ethnography to improve the status quo, this thesis reports on the feedback practices in a university foundation programme. The findings are based on three micro-case studies compiled and analysed by means of methods drawn from Ethnography, Sociolinguistics and Critical Analysis in conjunction with an expanded, multimodal, APPRAISAL analysis, including adjusted categories and the author’s own feedback typologies. Two major arguments emerge: the feedback provided amounts to a set of ritualised discourse practices and its effects can be likened to the product of the children’s game of Head-body-tail. Consequently, feedback conventions are opaque and, potentially, impede epistemological access. They further entrench five sets of ideologies: (1) Students must master basic English literacy before they are coached in more complex issues such as argumentation; an assumption which leads to differential socialisation. (2) There is a single set of literacy practices that is rewarded. (3) Students have different levels of authorial authority depending on their language abilities. (4) ‘Middle students’ may benefit the most from feedback. (5) Specific comments are preferred over general ones. Analysis of feedback, furthermore, shows that markers’ frames of reference shape their pedagogy and that draft and final versions of work may be framed differently by markers. These findings require a response and, in order to facilitate epistemological access, suggestions are made for improved marker training based on the problematisation of the ritual involved in marking students’ work in this university foundation programme. , Thesis (MA)--Rhodes University, Faculty of Humanities, Linguistics, 2012
- Full Text:
- Date Issued: 2012
Bioethical analysis of selected biomedical issues in South Africa and other countries
- Authors: Rusere, Jean
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MPharm
- Identifier: http://hdl.handle.net/10962/178530 , vital:42948
- Description: Access restricted until April 2023. , Thesis (MPharm) -- Faculty of Pharmacy, Pharmacy, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Rusere, Jean
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MPharm
- Identifier: http://hdl.handle.net/10962/178530 , vital:42948
- Description: Access restricted until April 2023. , Thesis (MPharm) -- Faculty of Pharmacy, Pharmacy, 2021
- Full Text:
- Date Issued: 2021-04
The manufacture of chaos and compromise: an analysis of the path to reform in South Africa
- Authors: Ryklief, Cheryl Cecelia
- Date: 1996
- Subjects: South Africa -- Politics and government -- 1994- , Apartheid -- South Africa -- History , South Africa -- Race relations , Black people -- South Africa -- Politics and government , South Africa -- Social conditions
- Language: English
- Type: text , thesis
- Identifier: http://hdl.handle.net/10962/76218 , vital:30521
- Description: This dissertation examines the factors leading to the opening of negotiations to majority rule in South Africa. It argues that changes to the socio-economic environment led to the growth of the strategic relevance of the black working class, and also created certain points of collision between the black working class and the policies of the state. These sectoral collisions engendered both the partial reforms of the Botha era as well as the rejection of these reforms by the black majority. The developments that emerged from the ensuing process of reform, resistance and repression in the 1980s weakened both the state and the black opposition sufficiently to allow for the emergence of a consensual solution to the political stalemate. , Dissertation submitted in accordance with the requirements of the University of Liverpool for the degree of Master of Arts
- Full Text:
- Date Issued: 1996
- Authors: Ryklief, Cheryl Cecelia
- Date: 1996
- Subjects: South Africa -- Politics and government -- 1994- , Apartheid -- South Africa -- History , South Africa -- Race relations , Black people -- South Africa -- Politics and government , South Africa -- Social conditions
- Language: English
- Type: text , thesis
- Identifier: http://hdl.handle.net/10962/76218 , vital:30521
- Description: This dissertation examines the factors leading to the opening of negotiations to majority rule in South Africa. It argues that changes to the socio-economic environment led to the growth of the strategic relevance of the black working class, and also created certain points of collision between the black working class and the policies of the state. These sectoral collisions engendered both the partial reforms of the Botha era as well as the rejection of these reforms by the black majority. The developments that emerged from the ensuing process of reform, resistance and repression in the 1980s weakened both the state and the black opposition sufficiently to allow for the emergence of a consensual solution to the political stalemate. , Dissertation submitted in accordance with the requirements of the University of Liverpool for the degree of Master of Arts
- Full Text:
- Date Issued: 1996
Detection and effects of selected pharmaceutical compounds from selected water bodies in the Eastern Cape Province, South Africa
- Authors: Setshedi, Koketso Josinah
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/177074 , vital:42788
- Description: Theses embargoed. Release date March 2023. , Thesis (MSc) -- Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Setshedi, Koketso Josinah
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/177074 , vital:42788
- Description: Theses embargoed. Release date March 2023. , Thesis (MSc) -- Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 2021
- Full Text:
- Date Issued: 2021-04
Investigating the factors that influence use of ICTs for citizen engagement in Malawi
- Authors: Sibande, Rachel Chavula
- Date: 2021-04
- Subjects: Information technology -- Malawi , Political participation -- Malawi , Mobile apps -- Malawi , UTAUT , Mzinda
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/177019 , vital:42782 , 10.21504/10962/177019
- Description: Literature has suggested that Malawians are keen to participate. Malawian’s willingness to participate is evident as the country has recorded high voter turnouts during the elections in recent decades. However, literature also suggests that there is minimal citizen engagement in between elections. Elsewhere, Information and Communication Technologies (ICTs) have been used to enhance citizen engagement, but ICT led citizen engagement is still an emerging field and yet to be explored as an area of research particularly in Malawi. We thus sought to explore if the use of ICTs could improve citizen engagement with councils, councilors, and utility companies that provide water and electricity in Malawi. We developed and deployed an ICT platform called Mzinda which means My location in Malawi’s populous Chichewa language. The platform provided various channels for citizens and duty bearers to engage via SMS, USSD, web and a mobile application. We sought to understand the factors that influence citizen’s behavior intention to use an ICT platform to engage. We applied the modified UTAUT model by including Attitude and Self Efficacy social constructs that have among others been cited as limitations of the UTAUT model. We conducted factor loadings of six social constructs of the modified UTAUT model to validate content and reexamine the model in the context of citizen engagement using ICTs in Malawi. We found that, Attitude and Self Efficacy were not significant determinants of the Behaviour Intention for citizens to use the ICT platform. However, 75% of the Behaviour Intention was influenced by Perfomance Expectancy and Effort Expectancy as moderated by age and gender. Empirical evidence showed that responsiveness and actionability of councils and councillors had improved. We also learned that citizens believed that service delivery had improved and that they had more influence over councils, councillors, and the utility companies because of using the ICT platform. We conclude by noting that improvements in service delivery; enhanced responsiveness and actionability of councils, councillors and the utility companies were not necessarily as a result of the ICT platform alone; but a combination of ICTs and non-technology mechanisms of engaging the stakeholders through community campaigns, radio programs, print media engagement, community meetings and debates among others. It is evident that ICTs are not the panacea of all citizen engagement problems. This research can be useful to researchers and practitioners in the technology and citizen engagement domains. , Thesis (MSc) -- Faculty of Science, Department of Computer Science, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Sibande, Rachel Chavula
- Date: 2021-04
- Subjects: Information technology -- Malawi , Political participation -- Malawi , Mobile apps -- Malawi , UTAUT , Mzinda
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/177019 , vital:42782 , 10.21504/10962/177019
- Description: Literature has suggested that Malawians are keen to participate. Malawian’s willingness to participate is evident as the country has recorded high voter turnouts during the elections in recent decades. However, literature also suggests that there is minimal citizen engagement in between elections. Elsewhere, Information and Communication Technologies (ICTs) have been used to enhance citizen engagement, but ICT led citizen engagement is still an emerging field and yet to be explored as an area of research particularly in Malawi. We thus sought to explore if the use of ICTs could improve citizen engagement with councils, councilors, and utility companies that provide water and electricity in Malawi. We developed and deployed an ICT platform called Mzinda which means My location in Malawi’s populous Chichewa language. The platform provided various channels for citizens and duty bearers to engage via SMS, USSD, web and a mobile application. We sought to understand the factors that influence citizen’s behavior intention to use an ICT platform to engage. We applied the modified UTAUT model by including Attitude and Self Efficacy social constructs that have among others been cited as limitations of the UTAUT model. We conducted factor loadings of six social constructs of the modified UTAUT model to validate content and reexamine the model in the context of citizen engagement using ICTs in Malawi. We found that, Attitude and Self Efficacy were not significant determinants of the Behaviour Intention for citizens to use the ICT platform. However, 75% of the Behaviour Intention was influenced by Perfomance Expectancy and Effort Expectancy as moderated by age and gender. Empirical evidence showed that responsiveness and actionability of councils and councillors had improved. We also learned that citizens believed that service delivery had improved and that they had more influence over councils, councillors, and the utility companies because of using the ICT platform. We conclude by noting that improvements in service delivery; enhanced responsiveness and actionability of councils, councillors and the utility companies were not necessarily as a result of the ICT platform alone; but a combination of ICTs and non-technology mechanisms of engaging the stakeholders through community campaigns, radio programs, print media engagement, community meetings and debates among others. It is evident that ICTs are not the panacea of all citizen engagement problems. This research can be useful to researchers and practitioners in the technology and citizen engagement domains. , Thesis (MSc) -- Faculty of Science, Department of Computer Science, 2021
- Full Text:
- Date Issued: 2021-04
Anisotropic copper oxide nanorods decorated with gold and palladium nanoparticles and their enzymatic properties
- Authors: Sicwetsha, Simbongile
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178547 , vital:42949
- Description: Access restricted until April 2023. , Thesis (MSc) -- Faculty of Science, Chemistry, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Sicwetsha, Simbongile
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178547 , vital:42949
- Description: Access restricted until April 2023. , Thesis (MSc) -- Faculty of Science, Chemistry, 2021
- Full Text:
- Date Issued: 2021-04
Larval fish dynamics within the coastal nearshore of the Eastern Cape, South Africa
- Authors: Sotshongaye, Oko
- Date: 2021-04
- Subjects: Fishes -- Larvae -- South Africa -- Eastern Cape , Fishes -- Larvae -- Development -- South Africa -- Eastern Cape , Fishes -- Larvae -- Ecology -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape , Fishes -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/176977 , vital:42776
- Description: The coastal nearshore is important for the early development of fishes as it is used for spawning and/or as a nursery. One of the central concerns in coastal ecology is understanding the role of the nearshore for larvae, ultimately providing key knowledge on population dynamics and hence helping in making decisions pertaining to conservation and resource management. The aim of this study was to investigate the alongshore and cross-shore distribution of larval fishes and the links to the physio-chemical conditions (including prevailing winds) and hydrodynamics in the region of Algoa Bay, situated on the south east coast in the warm temperate region of South Africa. Fish larvae were sampled at nine sites for the first component of the study (January 2016 –March 2017) and at four sites for the second component (November 2019), near the surface and bottom (15-50 m) of the water column as well as at two different distances from shore (~400 m/~3 km) using a set of bongo plankton nets towed behind a boat. Environmental data were simultaneously collected using and acoustic Doppler current profiler (ADCP) and conductivity, temperature, depth (CTD) profiler. Larval fish abundance generally decreased with increasing distance from the shore, however, this varied in space and time, with some larval species recorded in high abundances offshore. Close inshore the larvae of coastal fish species producing benthic eggs (CBE) including the Blenniidae and Gobiesocidae mostly dominated, while offshore the larvae of coastal fish species producing pelagic eggs (CPE) i.e. Sparidae and Cynoglossidae, as well as pelagic fish species producing pelagic eggs (PPE) i.e. Clupeidae and Engraulidae mostly dominated. Vertical distribution of larvae differed according to taxon, with the Callionymidae (CPE), Cynoglossidae and Gobiesocidae occurring at high densities at the bottom of the water column, while the Blenniidae dominated near the surface. Fluorescence, temperature and salinity varied with depth (surface/bottom), being particularly high at the surface; currents moved faster at the surface than the bottom of the water column. Increased abundances of larval fishes were evident after upwelling events (associated with easterly winds) in the Bay, while during downwelling (associated with westerly winds), low densities were generally recorded, except for the sites situated near headlands/capes where there were higher densities of fish larvae during downwelling events. Overall, the results of this study suggest that spawning mode of the adults, oceanography and environmental conditions coupled with what is known of the behaviour of fish larvae, were important in shaping the larval fish community of the Algoa Bay region. These results highlight the importance of incorporating multiple biological (developmental stage, reproductive mode, species) and physical (currents, fluorescence, wind-driven up/down-welling) factors when addressing the mechanims of transport of larval fish in the coastal nearshore. , Thesis (MSc) -- Faculty of Science, Department of Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Sotshongaye, Oko
- Date: 2021-04
- Subjects: Fishes -- Larvae -- South Africa -- Eastern Cape , Fishes -- Larvae -- Development -- South Africa -- Eastern Cape , Fishes -- Larvae -- Ecology -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape , Fishes -- Larvae -- Dispersal -- South Africa -- Eastern Cape
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/176977 , vital:42776
- Description: The coastal nearshore is important for the early development of fishes as it is used for spawning and/or as a nursery. One of the central concerns in coastal ecology is understanding the role of the nearshore for larvae, ultimately providing key knowledge on population dynamics and hence helping in making decisions pertaining to conservation and resource management. The aim of this study was to investigate the alongshore and cross-shore distribution of larval fishes and the links to the physio-chemical conditions (including prevailing winds) and hydrodynamics in the region of Algoa Bay, situated on the south east coast in the warm temperate region of South Africa. Fish larvae were sampled at nine sites for the first component of the study (January 2016 –March 2017) and at four sites for the second component (November 2019), near the surface and bottom (15-50 m) of the water column as well as at two different distances from shore (~400 m/~3 km) using a set of bongo plankton nets towed behind a boat. Environmental data were simultaneously collected using and acoustic Doppler current profiler (ADCP) and conductivity, temperature, depth (CTD) profiler. Larval fish abundance generally decreased with increasing distance from the shore, however, this varied in space and time, with some larval species recorded in high abundances offshore. Close inshore the larvae of coastal fish species producing benthic eggs (CBE) including the Blenniidae and Gobiesocidae mostly dominated, while offshore the larvae of coastal fish species producing pelagic eggs (CPE) i.e. Sparidae and Cynoglossidae, as well as pelagic fish species producing pelagic eggs (PPE) i.e. Clupeidae and Engraulidae mostly dominated. Vertical distribution of larvae differed according to taxon, with the Callionymidae (CPE), Cynoglossidae and Gobiesocidae occurring at high densities at the bottom of the water column, while the Blenniidae dominated near the surface. Fluorescence, temperature and salinity varied with depth (surface/bottom), being particularly high at the surface; currents moved faster at the surface than the bottom of the water column. Increased abundances of larval fishes were evident after upwelling events (associated with easterly winds) in the Bay, while during downwelling (associated with westerly winds), low densities were generally recorded, except for the sites situated near headlands/capes where there were higher densities of fish larvae during downwelling events. Overall, the results of this study suggest that spawning mode of the adults, oceanography and environmental conditions coupled with what is known of the behaviour of fish larvae, were important in shaping the larval fish community of the Algoa Bay region. These results highlight the importance of incorporating multiple biological (developmental stage, reproductive mode, species) and physical (currents, fluorescence, wind-driven up/down-welling) factors when addressing the mechanims of transport of larval fish in the coastal nearshore. , Thesis (MSc) -- Faculty of Science, Department of Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-04
Framing realities : a critical analysis of perspectival distortion in the film Alice by Czech Surrealist Jan Švankmajer
- Authors: Soutter, Simone
- Date: 2021-04
- Subjects: Švankmajer, Jan, 1934- -- Criticism and interpretation , Depression, Mental -- Exhibitions , Perception , Frames (Sociology) , Surrealism -- Influence , Cubism -- Influence , Surrealism in motion pictures , Depression, Mental in art
- Language: English
- Type: thesis , text , Masters , MFA
- Identifier: http://hdl.handle.net/10962/178365 , vital:42933
- Description: My MFA exhibition Through the looking glass; altered states of perception, explores my experience of mental distress: Major Depressive Disorder (MDD), through the medium of painting and multimedia collage. Situated in the Main Fine Art building on Rhodes University campus, this practical submission takes the form of a collection of oil paintings accompanied by an immersive wall of collaged experimentations, depicting the perspectival shifts I have experienced in coping with mental distress. The paintings explore concepts of framing and perspective, both literally and metaphorically in unpacking how our perceptions are manipulated by the way in which situations and concepts are framed. I use strategies and techniques drawn from the Surrealist and Cubist movements in order to depict my distorted experience of time and space, but also to tap into my own unconscious. In this mini-thesis: Framing realities; A critical analysis of perspectival distortion in the film Alice by Czech Surrealist Jan Švankmajer, I explore the strategies and concepts developed during the Surrealist and Cubist movements in relation to strategies used by Švankmajer in his disturbing interpretation of Alice’s Adventures into Wonderland. Here, he visually explores the psyche of an imaginative child. His unique interpretation is expressed through the combination of live-action film and stop-motion animation. I position my work in relation to themes proposed by Maurice Merleau-Ponty, Ernst Jentch, Sigmund Freud and Julia Kristeva. In the first Chapter: Framing and Perspectival shifts, I unpack framing and perspectival shifts exhibited in the Cubist (a physical shift), Dadaist (a social shift), and Surrealist (an unconscious shift) movements. In Chapter Two: A critical analysis of Alice by Jan Švankmajer, I engage in an analysis of themes (examined in the above art movements) relative to the film Alice. These are found objects and assemblages, ambiguity, distortion of scale, the Unconscious, the uncanny and multi-sensory modalities. Chapter Three: Through the Looking Glass; Altered states of perception, I discuss how the themes discussed in Chapter Two apply to my own body of work and how these themes are addressed with regards to my lived experience of mental disorder and distress. , Thesis (MFA) -- Faculty of Humanities, Fine Arts, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Soutter, Simone
- Date: 2021-04
- Subjects: Švankmajer, Jan, 1934- -- Criticism and interpretation , Depression, Mental -- Exhibitions , Perception , Frames (Sociology) , Surrealism -- Influence , Cubism -- Influence , Surrealism in motion pictures , Depression, Mental in art
- Language: English
- Type: thesis , text , Masters , MFA
- Identifier: http://hdl.handle.net/10962/178365 , vital:42933
- Description: My MFA exhibition Through the looking glass; altered states of perception, explores my experience of mental distress: Major Depressive Disorder (MDD), through the medium of painting and multimedia collage. Situated in the Main Fine Art building on Rhodes University campus, this practical submission takes the form of a collection of oil paintings accompanied by an immersive wall of collaged experimentations, depicting the perspectival shifts I have experienced in coping with mental distress. The paintings explore concepts of framing and perspective, both literally and metaphorically in unpacking how our perceptions are manipulated by the way in which situations and concepts are framed. I use strategies and techniques drawn from the Surrealist and Cubist movements in order to depict my distorted experience of time and space, but also to tap into my own unconscious. In this mini-thesis: Framing realities; A critical analysis of perspectival distortion in the film Alice by Czech Surrealist Jan Švankmajer, I explore the strategies and concepts developed during the Surrealist and Cubist movements in relation to strategies used by Švankmajer in his disturbing interpretation of Alice’s Adventures into Wonderland. Here, he visually explores the psyche of an imaginative child. His unique interpretation is expressed through the combination of live-action film and stop-motion animation. I position my work in relation to themes proposed by Maurice Merleau-Ponty, Ernst Jentch, Sigmund Freud and Julia Kristeva. In the first Chapter: Framing and Perspectival shifts, I unpack framing and perspectival shifts exhibited in the Cubist (a physical shift), Dadaist (a social shift), and Surrealist (an unconscious shift) movements. In Chapter Two: A critical analysis of Alice by Jan Švankmajer, I engage in an analysis of themes (examined in the above art movements) relative to the film Alice. These are found objects and assemblages, ambiguity, distortion of scale, the Unconscious, the uncanny and multi-sensory modalities. Chapter Three: Through the Looking Glass; Altered states of perception, I discuss how the themes discussed in Chapter Two apply to my own body of work and how these themes are addressed with regards to my lived experience of mental disorder and distress. , Thesis (MFA) -- Faculty of Humanities, Fine Arts, 2021
- Full Text:
- Date Issued: 2021-04
Investigating cell culture models for improved understanding of adipose tissue and co-morbidities in vitro
- Authors: Stoffels, Mihlali
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/164674 , vital:41154
- Description: Thesis (MSc)--Rhodes University, Faculty of Science, Biotechnology Innovation Centre, 2020
- Full Text:
- Date Issued: 2020
- Authors: Stoffels, Mihlali
- Date: 2020
- Subjects: Uncatalogued
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/164674 , vital:41154
- Description: Thesis (MSc)--Rhodes University, Faculty of Science, Biotechnology Innovation Centre, 2020
- Full Text:
- Date Issued: 2020
A novel Arf GTPase assay for antimalarial drug discovery
- Authors: Swart, Tarryn
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/178558 , vital:42950
- Description: Access restricted until April 2022. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Swart, Tarryn
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/178558 , vital:42950
- Description: Access restricted until April 2022. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
The Influence of Clientelism on the Informal Sector in Zimbabwe : a Case Study of Glen View 8 Complex, Harare
- Authors: Tandire, Justin
- Date: 2021-04
- Subjects: Patron and client -- Zimbabwe -- Harare , Informal sector (Economics) -- Zimbabwe -- Harare , Informal sector (Economics) -- Political aspects -- Zimbabwe -- Harare , Patronage, Political -- Zimbabwe -- Harare , ZANU-PF (Organization : Zimbabwe) , Zimbabwe -- Social conditions , Glen View Complex 8 (Zimbabwe)
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/177986 , vital:42896 , 10.21504/10962/177986
- Description: This study focuses on the influence of clientelism in the informal sector of Zimbabwe in Glen View 8 (Complex). The study used the case of Glen view 8 (complex) in Harare Province. The study focused on political dynamics in the informal sector; livelihood strategies employed by informal sector operators; manifestation of “Big Men”, social networks in the informal sector; and different strategies employed by operators to overcome the problems of political manipulation, clientelism and patronage. It employs a qualitative research methodology to enable a nuanced comprehension of the clientelistic relationships that take place in the informal sector of Zimbabwe. Through in-depth interviews, focus group discussions, narratives and in-depth interviews with key informants, the study explored the clientelistic nature of the informal sector. The major findings of the study are that the informal sector in Zimbabwe is influenced by political patronage. It was established that patronage influences the informal sector in Zimbabwe in general and at Glen View Complex 8 in particular. Some of the operators revealed that patronage negatively affects their business as they are sometimes forced to attend political party meetings either at the complex or at ZANU-PF star rallies in town. The operators experience a plethora of problems such as lack of security, poor sanitation, stiff competition, poor infrastructure, lack of insurance and fire outbreaks. It has been revealed that most of the problems experienced at the complex are a result of the politicisation of the informal sector particularly by the ZANU-PF party. Operators at the complex have described the politicisation of the informal sector as a major drawback to their efforts of realising maximum benefits from their work. Therefore, the thrust of this thesis is premised on the de-politicisation of the informal sector as the starting point in the transformation of the activities of the operators. , Thesis (PhD) -- Faculty of Humanities, Sociology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Tandire, Justin
- Date: 2021-04
- Subjects: Patron and client -- Zimbabwe -- Harare , Informal sector (Economics) -- Zimbabwe -- Harare , Informal sector (Economics) -- Political aspects -- Zimbabwe -- Harare , Patronage, Political -- Zimbabwe -- Harare , ZANU-PF (Organization : Zimbabwe) , Zimbabwe -- Social conditions , Glen View Complex 8 (Zimbabwe)
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/177986 , vital:42896 , 10.21504/10962/177986
- Description: This study focuses on the influence of clientelism in the informal sector of Zimbabwe in Glen View 8 (Complex). The study used the case of Glen view 8 (complex) in Harare Province. The study focused on political dynamics in the informal sector; livelihood strategies employed by informal sector operators; manifestation of “Big Men”, social networks in the informal sector; and different strategies employed by operators to overcome the problems of political manipulation, clientelism and patronage. It employs a qualitative research methodology to enable a nuanced comprehension of the clientelistic relationships that take place in the informal sector of Zimbabwe. Through in-depth interviews, focus group discussions, narratives and in-depth interviews with key informants, the study explored the clientelistic nature of the informal sector. The major findings of the study are that the informal sector in Zimbabwe is influenced by political patronage. It was established that patronage influences the informal sector in Zimbabwe in general and at Glen View Complex 8 in particular. Some of the operators revealed that patronage negatively affects their business as they are sometimes forced to attend political party meetings either at the complex or at ZANU-PF star rallies in town. The operators experience a plethora of problems such as lack of security, poor sanitation, stiff competition, poor infrastructure, lack of insurance and fire outbreaks. It has been revealed that most of the problems experienced at the complex are a result of the politicisation of the informal sector particularly by the ZANU-PF party. Operators at the complex have described the politicisation of the informal sector as a major drawback to their efforts of realising maximum benefits from their work. Therefore, the thrust of this thesis is premised on the de-politicisation of the informal sector as the starting point in the transformation of the activities of the operators. , Thesis (PhD) -- Faculty of Humanities, Sociology, 2021
- Full Text:
- Date Issued: 2021-04
Baculovirus synergism for improved management of false codling moth Thaumatotibia leucotreta Meyr. (Lepidoptera: Tortricidae)
- Authors: Taylor, David Graham
- Date: 2021-04
- Subjects: Baculoviruses , Cryptophlebia leucotreta , Cryptophlebia leucotreta -- Biological control , Biological pest control agents , Citrus -- Diseases and pests , Codling moth , Cryptophlebia peltastica nucleopolyhedrovirus (CrpeNPV)
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/176942 , vital:42774
- Description: Baculoviruses are an environmentally friendly and effective agent for managing lepidopteran pests. This includes the management of Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae), a serious pest of citrus in Southern Africa and a major threat to the South African citrus export industry. For more than 15 years, CrleGV-SA- based biopesticides have been used as part of an integrated pest management strategy for the control of T. leucotreta in citrus orchards in South Africa, under the names Cryptogran™ and Cryptex®. While these biopesticides have been effective during this period, there are some areas in which baculovirus use could potentially be improved. Baculoviruses are notoriously slow to kill in comparison to chemical-based pesticides, and lately, pest resistance to baculoviruses has become a major concern with the development of resistance by Cydia pomonella (Linnaeus) (Lepidoptera: Tortricidae) to its granulovirus occurring in the field in Europe. The consistent use of CrleGV-SA for more than 15 years in the field has raised concern that T. leucotreta could develop resistance to this virus, and has made it necessary to alter baculovirus-based management strategies to prevent this from occurring. A second baculovirus, Cryptophlebia peltastica nucleopolyhedrovirus (CrpeNPV), has recently been isolated and was shown to be effective against T. leucotreta. However, the interactions between CrleGV-SA and CrpeNPV are not yet understood and so it is important to test these interactions before both viruses are applied on the same orchards. Not only is it important to know whether these viruses could negatively impact each other, but it is also important to test whether they could interact synergistically. A synergistic interaction could not only provide a potential tool for the management of resistance, but it could also be exploited to improve baculovirus-based management of T. leucotreta. In this study, a stock of CrleGV-SA was purified by glycerol gradient centrifugation from T. leucotreta cadavers, while a stock of CrpeNPV purified from Cryptophlebia peltastica (Meyrick) (Lepidoptera: Tortricidae) cadavers was provided by River Bioscience (Pty) Ltd. These stocks were screened for purity by a multiplex polymerase chain reaction (mPCR) protocol designed to detect CrleGV-SA and CrpeNPV. The occlusion body (OB) density was then calculated using darkfield microscopy and a counting chamber. Both stocks were shown to be pure within the limits of the mPCR protocol, and the CrleGV-SA and CrpeNPV stocks were calculated to contain 3.08 × 1011 OBs/mL and 1.92 × 1011 OBs/mL respectively The first aspect of the interaction between CrleGV-SA and CrpeNPV that was investigated was the dose mortality, in terms of lethal concentration. This was calculated using 7-day surface-dose biological assays for each virus and a 1:1 mixture of OBs of the two against T. leucotreta neonates. The lethal concentrations of each treatment required to kill 50 % of larvae (LC50) and 90 % of larvae (LC90) for each treatment were then calculated and compared using a probit regression. The mixed infection performed significantly better than either virus by itself, while each virus by itself did not differ significantly from the other. The LC50 for CrleGV-SA, CrpeNPV and the mixed infection were 1.53 × 104 OBs/mL, 1.15 × 104 OBs/mL and 4.38 × 103 OBs/mL respectively. The LC90 of CrleGV-SA, CrpeNPV and the mixed infection were calculated to be 4.10 × 105 OBs/mL, 1.05 × 105 OBs/mL, and 4.09 × 104 OBs/mL respectively. The second aspect of the interaction between CrleGV-SA and CrpeNPV that was investigated was the speed of kill. A time-response biological assay protocol was created that allowed for effective observation of the larvae. This was then used to generate time-mortality data that were analysed by a logit regression function to calculate and compare the treatments at the time of 50 % larval mortality (LT50) and the time of 90 % mortality (LT90). Each virus by itself did not differ significantly from the other, while the mixed infection took significantly longer to kill 50 % and 90 % of the larvae, suggesting that there is competition for resources between viruses during the secondary, systemic phase of infection. The LT50 for CrleGV-SA, CrpeNPV and the mixed infection were 117.5 hours, 113.5 hours and 139.0 hours respectively. The LT90 for CrleGV-SA, CrpeNPV and the mixed infection were 153.2 hours, 159.3, and 193.4 hours respectively. Finally, the composition of OBs recovered from the cadavers produced by the time-response biological assays were investigated by mPCR. A method for extracting gDNA from OBs in neonate-sized T. leucotreta larvae is described. The presence of CrpeNPV along with CrleGV-SA was noted in 4 out of 9 larvae inoculated with only CrleGV-SA. The presence of CrleGV-SA as well as CrpeNPV was noted in all but one larva inoculated with only CrpeNPV, and both CrleGV-SA and CrpeNPV were noted in all but one larva inoculated with a 1:1 mixture of the two, with one larva only being positive for CrleGV-SA. This suggests either stock contamination or the presence of covert infections of CrleGV-SA and CrpeNPV in the T. leucotreta population used in this study. This is the second study to report an improved lethal concentration of a mixed infection of CrleGV-SA and CrpeNPV against T. leucotreta neonates, and the first study to report the slower speed of kill of a mixed infection of CrleGV-SA and CrpeNPV against T. leucotreta neonates. While the improved lethal concentration of the mixed infection is a promising step in the future improvement of baculovirus-based biopesticides, it is at the cost of a slower speed of kill. , Thesis (MSc) -- Faculty of Science, Department of Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Taylor, David Graham
- Date: 2021-04
- Subjects: Baculoviruses , Cryptophlebia leucotreta , Cryptophlebia leucotreta -- Biological control , Biological pest control agents , Citrus -- Diseases and pests , Codling moth , Cryptophlebia peltastica nucleopolyhedrovirus (CrpeNPV)
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/176942 , vital:42774
- Description: Baculoviruses are an environmentally friendly and effective agent for managing lepidopteran pests. This includes the management of Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae), a serious pest of citrus in Southern Africa and a major threat to the South African citrus export industry. For more than 15 years, CrleGV-SA- based biopesticides have been used as part of an integrated pest management strategy for the control of T. leucotreta in citrus orchards in South Africa, under the names Cryptogran™ and Cryptex®. While these biopesticides have been effective during this period, there are some areas in which baculovirus use could potentially be improved. Baculoviruses are notoriously slow to kill in comparison to chemical-based pesticides, and lately, pest resistance to baculoviruses has become a major concern with the development of resistance by Cydia pomonella (Linnaeus) (Lepidoptera: Tortricidae) to its granulovirus occurring in the field in Europe. The consistent use of CrleGV-SA for more than 15 years in the field has raised concern that T. leucotreta could develop resistance to this virus, and has made it necessary to alter baculovirus-based management strategies to prevent this from occurring. A second baculovirus, Cryptophlebia peltastica nucleopolyhedrovirus (CrpeNPV), has recently been isolated and was shown to be effective against T. leucotreta. However, the interactions between CrleGV-SA and CrpeNPV are not yet understood and so it is important to test these interactions before both viruses are applied on the same orchards. Not only is it important to know whether these viruses could negatively impact each other, but it is also important to test whether they could interact synergistically. A synergistic interaction could not only provide a potential tool for the management of resistance, but it could also be exploited to improve baculovirus-based management of T. leucotreta. In this study, a stock of CrleGV-SA was purified by glycerol gradient centrifugation from T. leucotreta cadavers, while a stock of CrpeNPV purified from Cryptophlebia peltastica (Meyrick) (Lepidoptera: Tortricidae) cadavers was provided by River Bioscience (Pty) Ltd. These stocks were screened for purity by a multiplex polymerase chain reaction (mPCR) protocol designed to detect CrleGV-SA and CrpeNPV. The occlusion body (OB) density was then calculated using darkfield microscopy and a counting chamber. Both stocks were shown to be pure within the limits of the mPCR protocol, and the CrleGV-SA and CrpeNPV stocks were calculated to contain 3.08 × 1011 OBs/mL and 1.92 × 1011 OBs/mL respectively The first aspect of the interaction between CrleGV-SA and CrpeNPV that was investigated was the dose mortality, in terms of lethal concentration. This was calculated using 7-day surface-dose biological assays for each virus and a 1:1 mixture of OBs of the two against T. leucotreta neonates. The lethal concentrations of each treatment required to kill 50 % of larvae (LC50) and 90 % of larvae (LC90) for each treatment were then calculated and compared using a probit regression. The mixed infection performed significantly better than either virus by itself, while each virus by itself did not differ significantly from the other. The LC50 for CrleGV-SA, CrpeNPV and the mixed infection were 1.53 × 104 OBs/mL, 1.15 × 104 OBs/mL and 4.38 × 103 OBs/mL respectively. The LC90 of CrleGV-SA, CrpeNPV and the mixed infection were calculated to be 4.10 × 105 OBs/mL, 1.05 × 105 OBs/mL, and 4.09 × 104 OBs/mL respectively. The second aspect of the interaction between CrleGV-SA and CrpeNPV that was investigated was the speed of kill. A time-response biological assay protocol was created that allowed for effective observation of the larvae. This was then used to generate time-mortality data that were analysed by a logit regression function to calculate and compare the treatments at the time of 50 % larval mortality (LT50) and the time of 90 % mortality (LT90). Each virus by itself did not differ significantly from the other, while the mixed infection took significantly longer to kill 50 % and 90 % of the larvae, suggesting that there is competition for resources between viruses during the secondary, systemic phase of infection. The LT50 for CrleGV-SA, CrpeNPV and the mixed infection were 117.5 hours, 113.5 hours and 139.0 hours respectively. The LT90 for CrleGV-SA, CrpeNPV and the mixed infection were 153.2 hours, 159.3, and 193.4 hours respectively. Finally, the composition of OBs recovered from the cadavers produced by the time-response biological assays were investigated by mPCR. A method for extracting gDNA from OBs in neonate-sized T. leucotreta larvae is described. The presence of CrpeNPV along with CrleGV-SA was noted in 4 out of 9 larvae inoculated with only CrleGV-SA. The presence of CrleGV-SA as well as CrpeNPV was noted in all but one larva inoculated with only CrpeNPV, and both CrleGV-SA and CrpeNPV were noted in all but one larva inoculated with a 1:1 mixture of the two, with one larva only being positive for CrleGV-SA. This suggests either stock contamination or the presence of covert infections of CrleGV-SA and CrpeNPV in the T. leucotreta population used in this study. This is the second study to report an improved lethal concentration of a mixed infection of CrleGV-SA and CrpeNPV against T. leucotreta neonates, and the first study to report the slower speed of kill of a mixed infection of CrleGV-SA and CrpeNPV against T. leucotreta neonates. While the improved lethal concentration of the mixed infection is a promising step in the future improvement of baculovirus-based biopesticides, it is at the cost of a slower speed of kill. , Thesis (MSc) -- Faculty of Science, Department of Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-04
Alternative approach to controlling citrus black spot disease
- Authors: Thabede, Jahman Thabo
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178569 , vital:42951
- Description: Access restricted until April 2022. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Thabede, Jahman Thabo
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Masters , MSc
- Identifier: http://hdl.handle.net/10962/178569 , vital:42951
- Description: Access restricted until April 2022. , Thesis (MSc) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
The effect of various substrate pretreatment methods on the enzymatic degradability of a Eucalyptus sp. – a potential feedstock for producing fermentable sugars
- Authors: Thoresen, Mariska
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/178580 , vital:42952
- Description: Access restricted until April 2022. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Thoresen, Mariska
- Date: 2021-04
- Subjects: To be added
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/178580 , vital:42952
- Description: Access restricted until April 2022. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2021
- Full Text:
- Date Issued: 2021-04
The reproductive performance, demography and spatial ecology of an extralimital white rhinoceros population
- Authors: Truter, Anja
- Date: 2021-04
- Subjects: White rhinoceros -- South Africa -- Eastern Cape , White rhinoceros -- Effect of poaching on -- South Africa -- Eastern Cape , White rhinoceros -- South Africa -- Eastern Cape -- Reproduction , White rhinoceros -- Dispersal -- South Africa -- Eastern Cape , White rhinoceros -- Food -- South Africa -- Eastern Cape , White rhinoceros -- Behavior -- South Africa -- Eastern Cape , Spatial ecology -- South Africa -- Eastern Cape , Animal populations -- South Africa -- Eastern Cape , Endangered species -- South Africa -- Eastern Cape , Spatial behavior in animals -- South Africa -- Eastern Cape , Shamwari Game Reserve (South Africa)
- Language: English
- Type: thesis , text , Master , MSc
- Identifier: http://hdl.handle.net/10962/177975 , vital:42895
- Description: The white rhinoceros (Ceratotherium simum) (hereafter rhino) is under threat of becoming extinct due to continued poaching for its horns. In South Africa and elsewhere in Africa private landowners have, over the last few decades, contributed to the conservation of various species, including rhinos, even in areas where they have not occurred historically (i.e., where they are extralimital). Unfortunately, very few studies have investigated the conservation contribution of extralimital white rhinos on private reserves to the overall meta-population and/or their reproductive performance. The first aim of my study was therefore to determine whether or not the white rhinos introduced to a private game reserve in the Eastern Cape Province in 1992 have been successful from a reproductive perspective. I calculated inter-calving intervals, age at first calving, conception period, sex ratio, fecundity and fertility rates for white rhinos over this 28-year period. The average annual population growth rate for the rhinos was 10%, which is higher than the recommended 5% by the Rhino Management Group. Trends in density-dependent parameters such as age at first calving and inter-calving intervals also indicated that my study population is still well below carrying capacity for white rhinos and is contributing positively to white rhino conservation in South Africa. The second aim of my study was to investigate home range size and vegetation preferences of white rhinos. Home ranges were mostly larger for all age groups compared to rhinos in their native range. Previously cultivated lands (dominated by several grass species) were preferred by all rhino age groups. The rehabilitation of these previous agricultural-based pastures has likely contributed to the successful introduction of the white rhino as an extralimital megaherbivore in the Eastern Cape. I conclude that although extralimital white rhino populations in the Eastern Cape can be successful from a reproductive perspective, their potential impact on the indigenous biodiversity of the region should be a key future research priority. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Truter, Anja
- Date: 2021-04
- Subjects: White rhinoceros -- South Africa -- Eastern Cape , White rhinoceros -- Effect of poaching on -- South Africa -- Eastern Cape , White rhinoceros -- South Africa -- Eastern Cape -- Reproduction , White rhinoceros -- Dispersal -- South Africa -- Eastern Cape , White rhinoceros -- Food -- South Africa -- Eastern Cape , White rhinoceros -- Behavior -- South Africa -- Eastern Cape , Spatial ecology -- South Africa -- Eastern Cape , Animal populations -- South Africa -- Eastern Cape , Endangered species -- South Africa -- Eastern Cape , Spatial behavior in animals -- South Africa -- Eastern Cape , Shamwari Game Reserve (South Africa)
- Language: English
- Type: thesis , text , Master , MSc
- Identifier: http://hdl.handle.net/10962/177975 , vital:42895
- Description: The white rhinoceros (Ceratotherium simum) (hereafter rhino) is under threat of becoming extinct due to continued poaching for its horns. In South Africa and elsewhere in Africa private landowners have, over the last few decades, contributed to the conservation of various species, including rhinos, even in areas where they have not occurred historically (i.e., where they are extralimital). Unfortunately, very few studies have investigated the conservation contribution of extralimital white rhinos on private reserves to the overall meta-population and/or their reproductive performance. The first aim of my study was therefore to determine whether or not the white rhinos introduced to a private game reserve in the Eastern Cape Province in 1992 have been successful from a reproductive perspective. I calculated inter-calving intervals, age at first calving, conception period, sex ratio, fecundity and fertility rates for white rhinos over this 28-year period. The average annual population growth rate for the rhinos was 10%, which is higher than the recommended 5% by the Rhino Management Group. Trends in density-dependent parameters such as age at first calving and inter-calving intervals also indicated that my study population is still well below carrying capacity for white rhinos and is contributing positively to white rhino conservation in South Africa. The second aim of my study was to investigate home range size and vegetation preferences of white rhinos. Home ranges were mostly larger for all age groups compared to rhinos in their native range. Previously cultivated lands (dominated by several grass species) were preferred by all rhino age groups. The rehabilitation of these previous agricultural-based pastures has likely contributed to the successful introduction of the white rhino as an extralimital megaherbivore in the Eastern Cape. I conclude that although extralimital white rhino populations in the Eastern Cape can be successful from a reproductive perspective, their potential impact on the indigenous biodiversity of the region should be a key future research priority. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-04
Design of pH Sensitive Electrochemical Sensor for Catecholamine Neurotransmitters Detection and the Screening Off of Ascorbic Acid
- Tshenkeng, Keamogetse Tebogo Charlotte
- Authors: Tshenkeng, Keamogetse Tebogo Charlotte
- Date: 2021-10-29
- Subjects: Catecholamines , Electrochemical sensors , Neurotransmitters , Vitamin C , Cobalt , Phthalocyanines , Cobalt (II) tetra-(3-carboxyphenoxy) phthalocyanine (CoTCPhOPc)
- Language: English
- Type: thesis , text
- Identifier: http://hdl.handle.net/10962/176921 , vital:42772
- Description: This study presents the synthesis of cobalt (II) tetra-(3-carboxyphenoxy) phthalocyanine (CoTCPhOPc) through the cyclotetramerization of 4-(3-carboxyphe-noxy)phthalonitrile and its full characterization using Fourier transform infrared (FT-IR) spectroscopy, ultraviolet-visible (UV-vis) spectroscopy, magnetic circular dichroism (MCD) spectroscopy, elemental analysis and mass spectrometry. The CoTCPhOPc was then immobilized onto phenylethylamino (PEA) pre-grafted gold electrode surface, Au-PEA using amide coupling reaction through a reaction with NHS and DCC to obtain Au-PEA-CoTCPhOPc. This yielded pH sensitive thin films due to the terminal carboxylic acid (–COOH) functional groups. Electrochemical and surface characterization was conducted to confirm the modification of the bare Au with PEA thin film (Au-PEA) and amide coupling of CoTCPhOPc (Au-PEA-CoTCPhOPc). The Au-PEA-CoTCPhOPc electrode was shown to possess pH selective properties towards negatively charged [Fe(CN)6]3-/4- and positively charged [Ru(NH3)6]2+/3+ redox probes. Au-PEA-CoTCPhOPc electrode surface enabled the detection of catecholamine neurotransmitters (dopamine, norepinephrine and epinephrine) and the screening off of ascorbic acid by means of pH sensitive functional groups. Bare Au and Au-PEA electrodes exhibited electro-oxidation and electroreduction of catecholamine neuro-transmitters and ascorbic acid at higher potentials compared to Au-PEA-CoTCPhOPc. There was no electro-oxidation or electroreduction of ascorbic acid at Au-PEA-CoTCPhOPc. For Au-PEA-CoTCPhOPc, excellent electrocatalytic oxidation with the limit of detection (LoD) determined using 3σ was found to be 1.32 (0.95), 2.11 (1.78) and 3.08 μM for electro-oxidation and electroreduction (in brackets) of dopamine, norepinephrine and epinephrine respectively. The limit of quantification (LoQ) was determined using 10σ and found to be 4.41 (3.17), 7.02 (5.93) and 10.3 μM electro-oxidation and electroreduction (in brackets) for dopamine, norepinephrine and epinephrine respectively. The Au-PEA-CoTCPhOPc thin film was shown to screen off ascorbic acid as no electrocatalytic oxidation was observed for up to 100.0 μM concentration. , Thesis (MSc) -- Faculty of Science, Department of Chemistry, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Tshenkeng, Keamogetse Tebogo Charlotte
- Date: 2021-10-29
- Subjects: Catecholamines , Electrochemical sensors , Neurotransmitters , Vitamin C , Cobalt , Phthalocyanines , Cobalt (II) tetra-(3-carboxyphenoxy) phthalocyanine (CoTCPhOPc)
- Language: English
- Type: thesis , text
- Identifier: http://hdl.handle.net/10962/176921 , vital:42772
- Description: This study presents the synthesis of cobalt (II) tetra-(3-carboxyphenoxy) phthalocyanine (CoTCPhOPc) through the cyclotetramerization of 4-(3-carboxyphe-noxy)phthalonitrile and its full characterization using Fourier transform infrared (FT-IR) spectroscopy, ultraviolet-visible (UV-vis) spectroscopy, magnetic circular dichroism (MCD) spectroscopy, elemental analysis and mass spectrometry. The CoTCPhOPc was then immobilized onto phenylethylamino (PEA) pre-grafted gold electrode surface, Au-PEA using amide coupling reaction through a reaction with NHS and DCC to obtain Au-PEA-CoTCPhOPc. This yielded pH sensitive thin films due to the terminal carboxylic acid (–COOH) functional groups. Electrochemical and surface characterization was conducted to confirm the modification of the bare Au with PEA thin film (Au-PEA) and amide coupling of CoTCPhOPc (Au-PEA-CoTCPhOPc). The Au-PEA-CoTCPhOPc electrode was shown to possess pH selective properties towards negatively charged [Fe(CN)6]3-/4- and positively charged [Ru(NH3)6]2+/3+ redox probes. Au-PEA-CoTCPhOPc electrode surface enabled the detection of catecholamine neurotransmitters (dopamine, norepinephrine and epinephrine) and the screening off of ascorbic acid by means of pH sensitive functional groups. Bare Au and Au-PEA electrodes exhibited electro-oxidation and electroreduction of catecholamine neuro-transmitters and ascorbic acid at higher potentials compared to Au-PEA-CoTCPhOPc. There was no electro-oxidation or electroreduction of ascorbic acid at Au-PEA-CoTCPhOPc. For Au-PEA-CoTCPhOPc, excellent electrocatalytic oxidation with the limit of detection (LoD) determined using 3σ was found to be 1.32 (0.95), 2.11 (1.78) and 3.08 μM for electro-oxidation and electroreduction (in brackets) of dopamine, norepinephrine and epinephrine respectively. The limit of quantification (LoQ) was determined using 10σ and found to be 4.41 (3.17), 7.02 (5.93) and 10.3 μM electro-oxidation and electroreduction (in brackets) for dopamine, norepinephrine and epinephrine respectively. The Au-PEA-CoTCPhOPc thin film was shown to screen off ascorbic acid as no electrocatalytic oxidation was observed for up to 100.0 μM concentration. , Thesis (MSc) -- Faculty of Science, Department of Chemistry, 2021
- Full Text:
- Date Issued: 2021-10-29
The development of an ionospheric storm-time index for the South African region
- Authors: Tshisaphungo, Mpho
- Date: 2021-04
- Subjects: Ionospheric storms -- South Africa , Global Positioning System , Neural networks (Computer science) , Regression analysis , Ionosondes , Auroral electrojet , Geomagnetic indexes , Magnetic storms -- South Africa
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/178409 , vital:42937 , 10.21504/10962/178409
- Description: This thesis presents the development of a regional ionospheric storm-time model which forms the foundation of an index to provide a quick view of the ionospheric storm effects over South African mid-latitude region. The model is based on the foF2 measurements from four South African ionosonde stations. The data coverage for the model development over Grahamstown (33.3◦S, 26.5◦E), Hermanus (34.42◦S, 19.22◦E), Louisvale (28.50◦S, 21.20◦E), and Madimbo (22.39◦S, 30.88◦E) is 1996-2016, 2009-2016, 2000-2016, and 2000-2016 respectively. Data from the Global Positioning System (GPS) and radio occultation (RO) technique were used during validation. As the measure of either positive or negative storm effect, the variation of the critical frequency of the F2 layer (foF2) from the monthly median values (denoted as _foF2) is modeled. The modeling of _foF2 is based on only storm time data with the criteria of Dst 6 -50 nT and Kp > 4. The modeling methods used in the study were artificial neural network (ANN), linear regression (LR) and polynomial functions. The approach taken was to first test the modeling techniques on a single station before expanding the study to cover the regional aspect. The single station modeling was developed based on ionosonde data over Grahamstown. The inputs for the model which related to seasonal variation, diurnal variation, geomagnetic activity and solar activity were considered. For the geomagnetic activity, three indices namely; the symmetric disturbance in the horizontal component of the Earth’s magnetic field (SYM − H), the Auroral Electrojet (AE) index and local geomagnetic index A, were included as inputs. The performance of a single station model revealed that, of the three geomagnetic indices, SYM − H index has the largest contribution of 41% and 54% based on ANN and LR techniques respectively. The average correlation coefficients (R) for both ANN and LR models was 0.8, when validated during the selected storms falling within the period of model development. When validated using storms that fall outside the period of model development, the model gave R values of 0.6 and 0.5 for ANN and LR respectively. In addition, the GPS total electron content (TEC) derived measurements were used to estimate foF2 data. This is because there are more GPS receivers than ionosonde locations and the utilisation of this data increases the spatial coverage of the regional model. The estimation of foF2 from GPS TEC was done at GPS-ionosonde co-locations using polynomial functions. The average R values of 0.69 and 0.65 were obtained between actual and derived _foF2 over the co-locations and other GPS stations respectively. Validation of GPS TEC derived foF2 with RO data over regions out of ionospheric pierce points coverage with respect to ionosonde locations gave R greater than 0.9 for the selected storm period of 4-8 August 2011. The regional storm-time model was then developed based on the ANN technique using the four South African ionosonde stations. The maximum and minimum R values of 0.6 and 0.5 were obtained over ionosonde and GPS locations respectively. This model forms the basis towards the regional ionospheric storm-time index. , Thesis (PhD) -- Faculty of Science, Physics and Electronics, 2021
- Full Text:
- Date Issued: 2021-04
- Authors: Tshisaphungo, Mpho
- Date: 2021-04
- Subjects: Ionospheric storms -- South Africa , Global Positioning System , Neural networks (Computer science) , Regression analysis , Ionosondes , Auroral electrojet , Geomagnetic indexes , Magnetic storms -- South Africa
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/178409 , vital:42937 , 10.21504/10962/178409
- Description: This thesis presents the development of a regional ionospheric storm-time model which forms the foundation of an index to provide a quick view of the ionospheric storm effects over South African mid-latitude region. The model is based on the foF2 measurements from four South African ionosonde stations. The data coverage for the model development over Grahamstown (33.3◦S, 26.5◦E), Hermanus (34.42◦S, 19.22◦E), Louisvale (28.50◦S, 21.20◦E), and Madimbo (22.39◦S, 30.88◦E) is 1996-2016, 2009-2016, 2000-2016, and 2000-2016 respectively. Data from the Global Positioning System (GPS) and radio occultation (RO) technique were used during validation. As the measure of either positive or negative storm effect, the variation of the critical frequency of the F2 layer (foF2) from the monthly median values (denoted as _foF2) is modeled. The modeling of _foF2 is based on only storm time data with the criteria of Dst 6 -50 nT and Kp > 4. The modeling methods used in the study were artificial neural network (ANN), linear regression (LR) and polynomial functions. The approach taken was to first test the modeling techniques on a single station before expanding the study to cover the regional aspect. The single station modeling was developed based on ionosonde data over Grahamstown. The inputs for the model which related to seasonal variation, diurnal variation, geomagnetic activity and solar activity were considered. For the geomagnetic activity, three indices namely; the symmetric disturbance in the horizontal component of the Earth’s magnetic field (SYM − H), the Auroral Electrojet (AE) index and local geomagnetic index A, were included as inputs. The performance of a single station model revealed that, of the three geomagnetic indices, SYM − H index has the largest contribution of 41% and 54% based on ANN and LR techniques respectively. The average correlation coefficients (R) for both ANN and LR models was 0.8, when validated during the selected storms falling within the period of model development. When validated using storms that fall outside the period of model development, the model gave R values of 0.6 and 0.5 for ANN and LR respectively. In addition, the GPS total electron content (TEC) derived measurements were used to estimate foF2 data. This is because there are more GPS receivers than ionosonde locations and the utilisation of this data increases the spatial coverage of the regional model. The estimation of foF2 from GPS TEC was done at GPS-ionosonde co-locations using polynomial functions. The average R values of 0.69 and 0.65 were obtained between actual and derived _foF2 over the co-locations and other GPS stations respectively. Validation of GPS TEC derived foF2 with RO data over regions out of ionospheric pierce points coverage with respect to ionosonde locations gave R greater than 0.9 for the selected storm period of 4-8 August 2011. The regional storm-time model was then developed based on the ANN technique using the four South African ionosonde stations. The maximum and minimum R values of 0.6 and 0.5 were obtained over ionosonde and GPS locations respectively. This model forms the basis towards the regional ionospheric storm-time index. , Thesis (PhD) -- Faculty of Science, Physics and Electronics, 2021
- Full Text:
- Date Issued: 2021-04