Design, development and evaluation of novel lead compounds as HIV-1 enzyme inhibitors
- Authors: Sekgota, Khethobole Cassius
- Date: 2015
- Subjects: Enzyme inhibitors , Viruses -- Reproduction , HIV (Viruses)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4546 , http://hdl.handle.net/10962/d1017926
- Description: This project has been concerned with the application of the Baylis-Hillman methodology to the synthesis of medicinally important diketo acid analogues (cinnamate ester-AZT conjugates and 3-hydroxy ester-AZT conjugates) as dual-action HIV-1 IN/RT inhibitors; and on exploratory studies in the preparation of 3-(amidomethyl)-(1H)-2-quinolones as PR inhibitors; and (1H)-2- quinolone-AZT conjugates as dual action IN/RT inhibitors. A series of Baylis-Hillman adducts has been prepared, typically in moderate to excellent yield, by reacting 2-nitrobenzaldehyde with methyl acrylate, ethyl acrylate and methyl vinyl ketone in the presence of 1,4- diazabicyclo[2.2.2]octane (DABCO). Subsequently, various transformations that include conjugate addition of primary and secondary amines to the α,ß-unsaturated moiety to obtain 2- (aminomethyl)-3-hydroxy-3-(2-nitrophenyl)propanoate derivatives, effective SN2´ substitution of the BH ß-hydroxy by a Vilsmeier-Haack in situ-generated chloride to afford Baylis-Hillman allyl chlorides, iron in acetic acid-catalyzed cyclisation to 3-acetoxymethyl-(1H)-2-quinolone derivatives were achieved. Thus, using the Baylis-Hillman methodology, two nuanced classes of diketo acid analogues were constructed. These involved conjugating appropriate propargylamine derivatives with AZT using the „click‟ reaction. In an exploratory study, the quinolone derivative, precisely 3-acetoxymethyl- (1H)-quinol-2-one, was transformed into 3-hydroxymethyl-(1H)-quinol-2-one using potassium carbonate in a mixture of methanol and water (1:1). Following successful hydrolysis, the resulting alcohol was transformed to the corresponding chloride, 3-chloromethyl-(1H)-quinol-2- one, using thionyl chloride. Subsequent nucleophilic substitution afforded 3-(aminomethyl)- (1H)-2-quinolone derivatives which were subsequently transformed to 3-(amidomethyl)-(1H)-2- quinolones; and 3-[(propargylamino)-methyl]-(1H)-quinol-2-one as precursors to quinolone- AZT derivatives. All compounds were characterized by NMR, IR, and where appropriate, high resolution MS
- Full Text:
- Date Issued: 2015
- Authors: Sekgota, Khethobole Cassius
- Date: 2015
- Subjects: Enzyme inhibitors , Viruses -- Reproduction , HIV (Viruses)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4546 , http://hdl.handle.net/10962/d1017926
- Description: This project has been concerned with the application of the Baylis-Hillman methodology to the synthesis of medicinally important diketo acid analogues (cinnamate ester-AZT conjugates and 3-hydroxy ester-AZT conjugates) as dual-action HIV-1 IN/RT inhibitors; and on exploratory studies in the preparation of 3-(amidomethyl)-(1H)-2-quinolones as PR inhibitors; and (1H)-2- quinolone-AZT conjugates as dual action IN/RT inhibitors. A series of Baylis-Hillman adducts has been prepared, typically in moderate to excellent yield, by reacting 2-nitrobenzaldehyde with methyl acrylate, ethyl acrylate and methyl vinyl ketone in the presence of 1,4- diazabicyclo[2.2.2]octane (DABCO). Subsequently, various transformations that include conjugate addition of primary and secondary amines to the α,ß-unsaturated moiety to obtain 2- (aminomethyl)-3-hydroxy-3-(2-nitrophenyl)propanoate derivatives, effective SN2´ substitution of the BH ß-hydroxy by a Vilsmeier-Haack in situ-generated chloride to afford Baylis-Hillman allyl chlorides, iron in acetic acid-catalyzed cyclisation to 3-acetoxymethyl-(1H)-2-quinolone derivatives were achieved. Thus, using the Baylis-Hillman methodology, two nuanced classes of diketo acid analogues were constructed. These involved conjugating appropriate propargylamine derivatives with AZT using the „click‟ reaction. In an exploratory study, the quinolone derivative, precisely 3-acetoxymethyl- (1H)-quinol-2-one, was transformed into 3-hydroxymethyl-(1H)-quinol-2-one using potassium carbonate in a mixture of methanol and water (1:1). Following successful hydrolysis, the resulting alcohol was transformed to the corresponding chloride, 3-chloromethyl-(1H)-quinol-2- one, using thionyl chloride. Subsequent nucleophilic substitution afforded 3-(aminomethyl)- (1H)-2-quinolone derivatives which were subsequently transformed to 3-(amidomethyl)-(1H)-2- quinolones; and 3-[(propargylamino)-methyl]-(1H)-quinol-2-one as precursors to quinolone- AZT derivatives. All compounds were characterized by NMR, IR, and where appropriate, high resolution MS
- Full Text:
- Date Issued: 2015
An in-silico investigation of Morita-Baylis-Hillman accessible heterocyclic analogues for applications as novel HIV-1 C protease inhibitors
- Authors: Sigauke, Lester Takunda
- Date: 2015
- Subjects: Protease inhibitors , Heterocyclic compounds , HIV (Viruses) , HIV infections , Drug resistance , Cheminformatics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4152 , http://hdl.handle.net/10962/d1017913
- Description: Cheminformatic approaches have been employed to optimize the bis-coumarin scaffold identified by Onywera et al. (2012) as a potential hit against the protease HIV-1 protein. The Open Babel library of commands was used to access functions that were incorporated into a markov chain recursive program that generated 17750 analogues of the bis-coumarin scaffold. The Morita-Baylis-Hillman accessible heterocycles were used to introduce structural diversity within the virtual library. In silico high through-put virtual screening using AutoDock Vina was used to rapidly screen the virtual library ligand set against 61 protease models built by Onywera et al. (2012). CheS-Mapper computed a principle component analysis of the compounds based on 13 selected chemical descriptors. The compounds were plotted against the principle component analysis within a 3 dimensional chemical space in order to inspect the diversity of the virtual library. The physicochemical properties and binding affinities were used to identify the top 3 performing ligands. ACPYPE was used to inspect the constitutional properties and eliminated virtual compounds that possessed open valences. Chromene based ligand 805 and ligand 6610 were selected as the lead candidates from the high-throughput virtual screening procedure we employed. Molecular dynamic simulations of the lead candidates performed for 5 ns allowed the stability of the ligand protein complexes with protease model 305152. The free energy of binding of the leads with protease model 305152 was computed over the first 50 ps of simulation using the molecular mechanics Poisson-Boltzmann method. Analysis structural features and energy profiles from molecular dynamic simulations of the protein–ligand complexes indicated that although ligand 805 had a weaker binding affinity in terms of docking, it outperformed ligand 6610 in terms of complex stability and free energy of binding. Medicinal chemistry approaches will be used to optimize the lead candidates before their analogues will be synthesized and assayed for in vivo protease activity.
- Full Text:
- Date Issued: 2015
- Authors: Sigauke, Lester Takunda
- Date: 2015
- Subjects: Protease inhibitors , Heterocyclic compounds , HIV (Viruses) , HIV infections , Drug resistance , Cheminformatics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4152 , http://hdl.handle.net/10962/d1017913
- Description: Cheminformatic approaches have been employed to optimize the bis-coumarin scaffold identified by Onywera et al. (2012) as a potential hit against the protease HIV-1 protein. The Open Babel library of commands was used to access functions that were incorporated into a markov chain recursive program that generated 17750 analogues of the bis-coumarin scaffold. The Morita-Baylis-Hillman accessible heterocycles were used to introduce structural diversity within the virtual library. In silico high through-put virtual screening using AutoDock Vina was used to rapidly screen the virtual library ligand set against 61 protease models built by Onywera et al. (2012). CheS-Mapper computed a principle component analysis of the compounds based on 13 selected chemical descriptors. The compounds were plotted against the principle component analysis within a 3 dimensional chemical space in order to inspect the diversity of the virtual library. The physicochemical properties and binding affinities were used to identify the top 3 performing ligands. ACPYPE was used to inspect the constitutional properties and eliminated virtual compounds that possessed open valences. Chromene based ligand 805 and ligand 6610 were selected as the lead candidates from the high-throughput virtual screening procedure we employed. Molecular dynamic simulations of the lead candidates performed for 5 ns allowed the stability of the ligand protein complexes with protease model 305152. The free energy of binding of the leads with protease model 305152 was computed over the first 50 ps of simulation using the molecular mechanics Poisson-Boltzmann method. Analysis structural features and energy profiles from molecular dynamic simulations of the protein–ligand complexes indicated that although ligand 805 had a weaker binding affinity in terms of docking, it outperformed ligand 6610 in terms of complex stability and free energy of binding. Medicinal chemistry approaches will be used to optimize the lead candidates before their analogues will be synthesized and assayed for in vivo protease activity.
- Full Text:
- Date Issued: 2015
Structural studies on yeast eIF5A using biomolecular NMR and molecular dynamics
- Authors: Sigauke, Lester Takunda
- Date: 2015
- Subjects: Molecular dynamics , Reverse transcriptase , HIV (Viruses) , HIV infections , Eukaryotic cells , Yeast
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4547 , http://hdl.handle.net/10962/d1017927
- Description: Eukaryotic initiation factor 5A, eIF5A, is a ubiquitous eukaryotic protein that has been shown to influence the translation initiation of a specific subset of mRNAs. It is the only protein known to undergo hypusination in a two-step post translational modification process involving deoxyhypusine synthase (DHS) and deoxyhypusine hydroxylase (DOHH) enzymes. Hypusination has been shown to influence translation of HIV-1 and HTLV-1 nuclear export signals, while the involvement of active hypusinated eIF5A in induction of IRES mediated processes that initiate pro-apoptotic process have inspired studies into the manipulation of eIF5A in anti-cancer and anti-diabetic therapies. eIF5A oligomerisation in eukaryotic systems has been shown to be influenced by hypusination and the mechanism of dimerisation is RNA dependent. Nuclear magnetic resonance spectroscopy approaches were proposed to solve the structure of the hypusinated eIF5A in solution in order to understand the influence of hypusination on the monomeric arrangement which enhances dimerisation and activates the protein. Cleavage of the 18 kDa protein monomer by introduction of thrombin cleavage site within the flexible domain was thought to give rise to 10 kDa fragments accessible to a 600 MHz NMR spectrometer. Heteronuclear single quantum correlation experiments of the mutated isotopically labelled protein expressed in E. coli showed that the eIF5A protein with a thrombin cleavage insert, eIF5AThr (eIF5A subscript Thr), was unfolded. In silico investigations of the behaviour of eIF5A and eIF5AThr (eIF5A subscript Thr) models in solution using molecular dynamics showed that the mutated model had different solution dynamics to the native model. Chemical shift predictors were used to extract atomic resolution data of solution dynamics and the introduction of rigidity in the flexible loop region of eIF5A affected solution behaviour consistent with lack of in vivo function of eIF5AThr (eIF5A subscript Thr) in yeast. Residual dipolar coupling and T₁ relaxation times were calculated in anticipation of the extraction of experimental data from RDC and relaxation dispersion experiments based on HSQC measurable restraints.
- Full Text:
- Date Issued: 2015
- Authors: Sigauke, Lester Takunda
- Date: 2015
- Subjects: Molecular dynamics , Reverse transcriptase , HIV (Viruses) , HIV infections , Eukaryotic cells , Yeast
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4547 , http://hdl.handle.net/10962/d1017927
- Description: Eukaryotic initiation factor 5A, eIF5A, is a ubiquitous eukaryotic protein that has been shown to influence the translation initiation of a specific subset of mRNAs. It is the only protein known to undergo hypusination in a two-step post translational modification process involving deoxyhypusine synthase (DHS) and deoxyhypusine hydroxylase (DOHH) enzymes. Hypusination has been shown to influence translation of HIV-1 and HTLV-1 nuclear export signals, while the involvement of active hypusinated eIF5A in induction of IRES mediated processes that initiate pro-apoptotic process have inspired studies into the manipulation of eIF5A in anti-cancer and anti-diabetic therapies. eIF5A oligomerisation in eukaryotic systems has been shown to be influenced by hypusination and the mechanism of dimerisation is RNA dependent. Nuclear magnetic resonance spectroscopy approaches were proposed to solve the structure of the hypusinated eIF5A in solution in order to understand the influence of hypusination on the monomeric arrangement which enhances dimerisation and activates the protein. Cleavage of the 18 kDa protein monomer by introduction of thrombin cleavage site within the flexible domain was thought to give rise to 10 kDa fragments accessible to a 600 MHz NMR spectrometer. Heteronuclear single quantum correlation experiments of the mutated isotopically labelled protein expressed in E. coli showed that the eIF5A protein with a thrombin cleavage insert, eIF5AThr (eIF5A subscript Thr), was unfolded. In silico investigations of the behaviour of eIF5A and eIF5AThr (eIF5A subscript Thr) models in solution using molecular dynamics showed that the mutated model had different solution dynamics to the native model. Chemical shift predictors were used to extract atomic resolution data of solution dynamics and the introduction of rigidity in the flexible loop region of eIF5A affected solution behaviour consistent with lack of in vivo function of eIF5AThr (eIF5A subscript Thr) in yeast. Residual dipolar coupling and T₁ relaxation times were calculated in anticipation of the extraction of experimental data from RDC and relaxation dispersion experiments based on HSQC measurable restraints.
- Full Text:
- Date Issued: 2015
The diets of co-occuring anurans in a small South African river: assessments using stomach contents, stable isotope ratios and fatty acid profiles
- Authors: Sikutshwa, Likho
- Date: 2015
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/54405 , vital:26562
- Description: During their life cycle amphibians change their habitat and feeding, and are important consumers in both terrestrial and aquatic habitats. The trophic ecology of anurans has been studied intensively using gut content analysis, but very little work has been done using biochemical techniques such as stable isotope and fatty acid analyses. These biochemical techniques produce data that allow for additional inferences about the trophic ecology of anurans, as they reveal what the organisms assimilated over time rather than what was recently ingested. The investigation of the feeding ecology and trophic interactions of anurans using gut content analyses together with stable isotope and fatty acid analyses will help us to better understand their ecological roles. The objective of this thesis was to assess the feeding ecology of four anurans (Amietia angolensis, Amietophyrnus rangeri, Strongylopus grayii and Xenopus laevis) in a temperate river using a combination of gut content, stable isotope and fatty acid analyses. Frogs, tadpoles and potential food sources were sampled in two sites (upstream and downstream) in the Kowie River, Eastern Cape Province, South Africa. Gut content analyses identified 147 prey items belonging to 12 prey orders in the stomachs of the sampled specimens. In both A. angolensis and S. grayii the most important prey category was Coleoptera, followed by Hemiptera, Diptera and Hymenoptera at both sites. Aquatic prey items (aquatic hemipterans, chirinomids and blackflies) were the most important food sources for X. laevis (Alimentary Index (IAi) = 6.4; 5.2; 4.2). In Am. rangeri, Hymenoptera was the most important prey category (IAi = 8.3). The trophic niche overlap between A. angolensis and S. grayii was biologically significant (> 0.6), and in the remaining species there was no significant trophic niche overlap. Amietia angolensis showed a larger trophic niche (Levin’s measure; B = 7.7 and Bst = 0.84 downstream, and upstream B = 7.6 (Bst = 0.82) compared to the other species. The gut content analyses showed that frogs feed on a variety of prey items that constitutes food sources from both aquatic and terrestrial habitats. Stable isotopes indicated that aquatic derived sources contributed significantly more towards the diets of X. laevis, A. angolensis tadpoles and S. grayii tadpoles compared with the other anurans, whereas aquatic and terrestrial derived food sources contributed equally to the diets of A. angolensis and S. grayii. Increased trophic positions in A. angolensis and S. grayii occurred throughout their development. The four different species had similar fatty acid profiles in the upstream region, and fairly similar δ13C values, suggesting that they probably consumed similar food. Fatty acid profiles of anurans in the downstream region showed distinct separations among the species. Tadpoles had high levels of diatom-associated fatty acids (20:5ω3; A. angolensis tadpole – 8.4 %, S. grayii tadpole – 9.4 % upstream and downstream; 9.1 and 6.1 % total fatty acids (TFA), respectively). All four species had substantial contributions from bacterial fatty acids, and large proportions of saturated fatty acids (30.6 - 50.0 %) including those with 14 and 18 carbons, indicating that bacterial and detritus food sources played an important role in their diets. The fatty acid profiles revealed high proportions of polyunsaturated fatty acids (PUFAs) and essential fatty acids (EFAs) in all species, indicating a good quality of food and that the quality of food consumed was similar among species. The results demonstrated the usefulness of a combination of traditional techniques (gut content techniques) and biochemical techniques (stable isotopes and fatty acid analysis) for assessing consumption and assimilation. The amphibian assemblages examined derived much of their energy from terrestrial and aquatic sources. This information will allow more precise and comprehensive assessments of trophic interactions in freshwater habitats, along with aiding in future amphibian conservation and management efforts.
- Full Text:
- Date Issued: 2015
- Authors: Sikutshwa, Likho
- Date: 2015
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/54405 , vital:26562
- Description: During their life cycle amphibians change their habitat and feeding, and are important consumers in both terrestrial and aquatic habitats. The trophic ecology of anurans has been studied intensively using gut content analysis, but very little work has been done using biochemical techniques such as stable isotope and fatty acid analyses. These biochemical techniques produce data that allow for additional inferences about the trophic ecology of anurans, as they reveal what the organisms assimilated over time rather than what was recently ingested. The investigation of the feeding ecology and trophic interactions of anurans using gut content analyses together with stable isotope and fatty acid analyses will help us to better understand their ecological roles. The objective of this thesis was to assess the feeding ecology of four anurans (Amietia angolensis, Amietophyrnus rangeri, Strongylopus grayii and Xenopus laevis) in a temperate river using a combination of gut content, stable isotope and fatty acid analyses. Frogs, tadpoles and potential food sources were sampled in two sites (upstream and downstream) in the Kowie River, Eastern Cape Province, South Africa. Gut content analyses identified 147 prey items belonging to 12 prey orders in the stomachs of the sampled specimens. In both A. angolensis and S. grayii the most important prey category was Coleoptera, followed by Hemiptera, Diptera and Hymenoptera at both sites. Aquatic prey items (aquatic hemipterans, chirinomids and blackflies) were the most important food sources for X. laevis (Alimentary Index (IAi) = 6.4; 5.2; 4.2). In Am. rangeri, Hymenoptera was the most important prey category (IAi = 8.3). The trophic niche overlap between A. angolensis and S. grayii was biologically significant (> 0.6), and in the remaining species there was no significant trophic niche overlap. Amietia angolensis showed a larger trophic niche (Levin’s measure; B = 7.7 and Bst = 0.84 downstream, and upstream B = 7.6 (Bst = 0.82) compared to the other species. The gut content analyses showed that frogs feed on a variety of prey items that constitutes food sources from both aquatic and terrestrial habitats. Stable isotopes indicated that aquatic derived sources contributed significantly more towards the diets of X. laevis, A. angolensis tadpoles and S. grayii tadpoles compared with the other anurans, whereas aquatic and terrestrial derived food sources contributed equally to the diets of A. angolensis and S. grayii. Increased trophic positions in A. angolensis and S. grayii occurred throughout their development. The four different species had similar fatty acid profiles in the upstream region, and fairly similar δ13C values, suggesting that they probably consumed similar food. Fatty acid profiles of anurans in the downstream region showed distinct separations among the species. Tadpoles had high levels of diatom-associated fatty acids (20:5ω3; A. angolensis tadpole – 8.4 %, S. grayii tadpole – 9.4 % upstream and downstream; 9.1 and 6.1 % total fatty acids (TFA), respectively). All four species had substantial contributions from bacterial fatty acids, and large proportions of saturated fatty acids (30.6 - 50.0 %) including those with 14 and 18 carbons, indicating that bacterial and detritus food sources played an important role in their diets. The fatty acid profiles revealed high proportions of polyunsaturated fatty acids (PUFAs) and essential fatty acids (EFAs) in all species, indicating a good quality of food and that the quality of food consumed was similar among species. The results demonstrated the usefulness of a combination of traditional techniques (gut content techniques) and biochemical techniques (stable isotopes and fatty acid analysis) for assessing consumption and assimilation. The amphibian assemblages examined derived much of their energy from terrestrial and aquatic sources. This information will allow more precise and comprehensive assessments of trophic interactions in freshwater habitats, along with aiding in future amphibian conservation and management efforts.
- Full Text:
- Date Issued: 2015
Exploration status for oxide and sulphide zinc ores at Skorpion Zinc Mine, Namibia
- Authors: Sitoka, Stefanus
- Date: 2015
- Subjects: Scorpion Zinc Mine (Namibia) , Zinc ores , Oxide minerals , Sulfide minerals , Zinc mines and mining -- Namibia , Prospecting -- Namibia
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5087 , http://hdl.handle.net/10962/d1018204
- Description: The thesis is inspired by recent interests in oxide zinc ores caused by new developments in the technology of hydrometallurgy. The improved techniques turned the non-sulphide zinc ores in to attractive exploration targets due to a number of advantages such as low metal recovery costs and favorable environmental aspects such as the obvious absence of sulfur (Large, 2001). Historically extraction of zinc metal from oxide ores was not possible until recently. The metallurgical complexity resulted in a lack of interest and hence some economic oxide zinc ores might have been missed by conventional exploration techniques. The study presents a review of exploration status at Skorpion mine based on different exploration techniques and their application to sulphide and oxide zinc ore exploration. The challenge facing the mineral exploration industry today is the inability to detect mineral deposits under cover. Therefore a key to successful exploration program lies in the selection of the right exploration technique. Important parameters that should be highlighted in the exploration methodology are the geological situation of an area, equipment applicability and effectiveness, survey limitation, equipment mobilization and the safety aspects involved. The aim of this thesis is to provide a general guideline for sulphide and non-sulphide zinc ore exploration on the Skorpion area and other similar geological environments. Geochemical surveys appears to be more complimentary in exploration of non-sulphide zinc exploration. Although geochemical techniques are preferred, it is equally important to choose the right soil horizon. Furthermore, sample media may mean the difference between success and failure in geochemical exploration of non-sulphide zinc mineralization, due to high mobility of zinc in the surficial environment. On cost comparison, surface geochemical surveys programs are more cost effective except for litho-geochemical sampling which are commonly carried out through subsurface drilling. Geophysical techniques have limited application in exploration of non-sulphide zinc mineralization due to a lack of major physical properties (e.g., magnetic and electrical properties) in non-sulphides unlike their sulphide counterparts. However geophysical methods are commendable in delineating massive and disseminated sulphides mainly if they are associated with major Fe minerals (pyrrhotite or magnetite). In addition, geophysical techniques may be effective in mapping of subsurface primary and secondary structures such as basin faults which might have acted as pathways for metal-rich fluids. Terms non-sulphide and oxide zinc mineralization are used interchangeably throughout the thesis. Recommendations on regional and local target generation are presented in the thesis to give some basic guide lines on target generation strategies. The most important conclusion reached in this study is that, success in exploration for non-sulphide or sulphide zinc mineralization might be enhanced through the integrated exploration methodology.
- Full Text:
- Date Issued: 2015
- Authors: Sitoka, Stefanus
- Date: 2015
- Subjects: Scorpion Zinc Mine (Namibia) , Zinc ores , Oxide minerals , Sulfide minerals , Zinc mines and mining -- Namibia , Prospecting -- Namibia
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5087 , http://hdl.handle.net/10962/d1018204
- Description: The thesis is inspired by recent interests in oxide zinc ores caused by new developments in the technology of hydrometallurgy. The improved techniques turned the non-sulphide zinc ores in to attractive exploration targets due to a number of advantages such as low metal recovery costs and favorable environmental aspects such as the obvious absence of sulfur (Large, 2001). Historically extraction of zinc metal from oxide ores was not possible until recently. The metallurgical complexity resulted in a lack of interest and hence some economic oxide zinc ores might have been missed by conventional exploration techniques. The study presents a review of exploration status at Skorpion mine based on different exploration techniques and their application to sulphide and oxide zinc ore exploration. The challenge facing the mineral exploration industry today is the inability to detect mineral deposits under cover. Therefore a key to successful exploration program lies in the selection of the right exploration technique. Important parameters that should be highlighted in the exploration methodology are the geological situation of an area, equipment applicability and effectiveness, survey limitation, equipment mobilization and the safety aspects involved. The aim of this thesis is to provide a general guideline for sulphide and non-sulphide zinc ore exploration on the Skorpion area and other similar geological environments. Geochemical surveys appears to be more complimentary in exploration of non-sulphide zinc exploration. Although geochemical techniques are preferred, it is equally important to choose the right soil horizon. Furthermore, sample media may mean the difference between success and failure in geochemical exploration of non-sulphide zinc mineralization, due to high mobility of zinc in the surficial environment. On cost comparison, surface geochemical surveys programs are more cost effective except for litho-geochemical sampling which are commonly carried out through subsurface drilling. Geophysical techniques have limited application in exploration of non-sulphide zinc mineralization due to a lack of major physical properties (e.g., magnetic and electrical properties) in non-sulphides unlike their sulphide counterparts. However geophysical methods are commendable in delineating massive and disseminated sulphides mainly if they are associated with major Fe minerals (pyrrhotite or magnetite). In addition, geophysical techniques may be effective in mapping of subsurface primary and secondary structures such as basin faults which might have acted as pathways for metal-rich fluids. Terms non-sulphide and oxide zinc mineralization are used interchangeably throughout the thesis. Recommendations on regional and local target generation are presented in the thesis to give some basic guide lines on target generation strategies. The most important conclusion reached in this study is that, success in exploration for non-sulphide or sulphide zinc mineralization might be enhanced through the integrated exploration methodology.
- Full Text:
- Date Issued: 2015
An exposition of Hilbert C-modules
- Authors: Sokopo, Bulelani Joab
- Date: 2015
- Subjects: Mathematics Algebra , Functions, Continuous Mathematical analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/50008 , vital:41974
- Description: In trying to prove that derivations of type I AW -algebras are inner, I. Kaplansky introduced and developed the basics of the concept of Hilbert C- modules. He sought to generalize the idea of a Hilbert space by replacing the field C of all complex numbers with a general (commutative and unital) C-algebra. Twenty years later, the concept was broadened and expanded to non-commutative C-algebras by W. L. Paschke and M. A. Rieffel in their papers on inner product modules over B-algebras and induced representations of C-algebras, respectively. Since then, the theory of Hilbert C-modules has grown rapidly. It was used by G. G. Kasparov as the framework for his bivariant K-theory. More recently, Hilbert C-modules have formed the technical basis for the C*-algebraic approach to quantum group theory. The aim of this dissertation is to provide as detailed an account as possible of the theory of Hilbert C-modules, as given in a book of E. C. Lance, up to and including the KSGNS construction. The KSGNS construction, named after Kasparov, Stinespring, Gelfand, Naimark and Segal, is a generalization to Hilbert C-modules of the familiar GNS construction for C-algebras. The result by Kaplansky that all derivations of a type I AW-algebra are inner is given as an application in the final chapter of the dissertation.
- Full Text:
- Date Issued: 2015
- Authors: Sokopo, Bulelani Joab
- Date: 2015
- Subjects: Mathematics Algebra , Functions, Continuous Mathematical analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/50008 , vital:41974
- Description: In trying to prove that derivations of type I AW -algebras are inner, I. Kaplansky introduced and developed the basics of the concept of Hilbert C- modules. He sought to generalize the idea of a Hilbert space by replacing the field C of all complex numbers with a general (commutative and unital) C-algebra. Twenty years later, the concept was broadened and expanded to non-commutative C-algebras by W. L. Paschke and M. A. Rieffel in their papers on inner product modules over B-algebras and induced representations of C-algebras, respectively. Since then, the theory of Hilbert C-modules has grown rapidly. It was used by G. G. Kasparov as the framework for his bivariant K-theory. More recently, Hilbert C-modules have formed the technical basis for the C*-algebraic approach to quantum group theory. The aim of this dissertation is to provide as detailed an account as possible of the theory of Hilbert C-modules, as given in a book of E. C. Lance, up to and including the KSGNS construction. The KSGNS construction, named after Kasparov, Stinespring, Gelfand, Naimark and Segal, is a generalization to Hilbert C-modules of the familiar GNS construction for C-algebras. The result by Kaplansky that all derivations of a type I AW-algebra are inner is given as an application in the final chapter of the dissertation.
- Full Text:
- Date Issued: 2015
A comparison of open source and proprietary digital forensic software
- Authors: Sonnekus, Michael Hendrik
- Date: 2015
- Subjects: Computer crimes , Computer crimes -- Investigation , Electronic evidence , Open source software
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4717 , http://hdl.handle.net/10962/d1017939
- Description: Scrutiny of the capabilities and accuracy of computer forensic tools is increasing as the number of incidents relying on digital evidence and the weight of that evidence increase. This thesis describes the capabilities of the leading proprietary and open source digital forensic tools. The capabilities of the tools were tested separately on digital media that had been formatted using Windows and Linux. Experiments were carried out with the intention of establishing whether the capabilities of open source computer forensics are similar to those of proprietary computer forensic tools, and whether these tools could complement one another. The tools were tested with regards to their capabilities to make and analyse digital forensic images in a forensically sound manner. The tests were carried out on each media type after deleting data from the media, and then repeated after formatting the media. The results of the experiments performed demonstrate that both proprietary and open source computer forensic tools have superior capabilities in different scenarios, and that the toolsets can be used to validate and complement one another. The implication of these findings is that investigators have an affordable means of validating their findings and are able to more effectively investigate digital media.
- Full Text:
- Date Issued: 2015
- Authors: Sonnekus, Michael Hendrik
- Date: 2015
- Subjects: Computer crimes , Computer crimes -- Investigation , Electronic evidence , Open source software
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4717 , http://hdl.handle.net/10962/d1017939
- Description: Scrutiny of the capabilities and accuracy of computer forensic tools is increasing as the number of incidents relying on digital evidence and the weight of that evidence increase. This thesis describes the capabilities of the leading proprietary and open source digital forensic tools. The capabilities of the tools were tested separately on digital media that had been formatted using Windows and Linux. Experiments were carried out with the intention of establishing whether the capabilities of open source computer forensics are similar to those of proprietary computer forensic tools, and whether these tools could complement one another. The tools were tested with regards to their capabilities to make and analyse digital forensic images in a forensically sound manner. The tests were carried out on each media type after deleting data from the media, and then repeated after formatting the media. The results of the experiments performed demonstrate that both proprietary and open source computer forensic tools have superior capabilities in different scenarios, and that the toolsets can be used to validate and complement one another. The implication of these findings is that investigators have an affordable means of validating their findings and are able to more effectively investigate digital media.
- Full Text:
- Date Issued: 2015
Approaches in the prioritisation of areas for biodiversity conservation: a case study from the Western Cape pf South Africa
- Authors: Southey, Phillippa Kate
- Date: 2015
- Subjects: Biodiversity conservation -- South Africa -- Western Cape , Conservation of natural resources -- South Africa -- Western Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/4122 , vital:20548
- Description: Historical ad hoc allocations of land for biodiversity conservation have led to a biased representation of habitat within the Cape Floristic Region, with Protected Areas concentrated in upland areas at high altitudes and on steep slopes. The field of Conservation Planning developed to ensure that allocations of areas to Protected status no longer result in such bias and rather promotes the persistence of biodiversity. This study reviewed a recent allocation of land to biodiversity conservation within Western Cape of South Africa, using both a quantitative and qualitative approach, to determine their value to biodiversity conservation. The area was previously used for commercial forestry but now has been allocated to conservation land-uses. The allocation was based on the area’s value to the forestry industry. The qualitative approach in this study engaged with relevant stakeholder groups to map priority areas, while the quantitative approach used available data on biodiversity features to map priority areas. Neither approach determined that the area allocated is in its full extent a priority for biodiversity conservation. This indicated that in the current era of Conservation Planning, Protected Areas are still being allocated in an ad hoc manner, as a result of their limited perceived benefit to anthropocentric needs. The future allocation of land to biodiversity conservation should rather integrate expert knowledge and available quantifiable data to ensure that priority areas for biodiversity conservation are being protected.
- Full Text:
- Date Issued: 2015
- Authors: Southey, Phillippa Kate
- Date: 2015
- Subjects: Biodiversity conservation -- South Africa -- Western Cape , Conservation of natural resources -- South Africa -- Western Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/4122 , vital:20548
- Description: Historical ad hoc allocations of land for biodiversity conservation have led to a biased representation of habitat within the Cape Floristic Region, with Protected Areas concentrated in upland areas at high altitudes and on steep slopes. The field of Conservation Planning developed to ensure that allocations of areas to Protected status no longer result in such bias and rather promotes the persistence of biodiversity. This study reviewed a recent allocation of land to biodiversity conservation within Western Cape of South Africa, using both a quantitative and qualitative approach, to determine their value to biodiversity conservation. The area was previously used for commercial forestry but now has been allocated to conservation land-uses. The allocation was based on the area’s value to the forestry industry. The qualitative approach in this study engaged with relevant stakeholder groups to map priority areas, while the quantitative approach used available data on biodiversity features to map priority areas. Neither approach determined that the area allocated is in its full extent a priority for biodiversity conservation. This indicated that in the current era of Conservation Planning, Protected Areas are still being allocated in an ad hoc manner, as a result of their limited perceived benefit to anthropocentric needs. The future allocation of land to biodiversity conservation should rather integrate expert knowledge and available quantifiable data to ensure that priority areas for biodiversity conservation are being protected.
- Full Text:
- Date Issued: 2015
Glycolytic potential and meat quality from dorper and merino sheep slaughtered at a commercial abattoir
- Authors: Stempa, Thuthuzelwa
- Date: 2015
- Subjects: Slaughtering and slaughter-houses Meat -- Quality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/15310 , vital:40361
- Description: The objective of the study was to determine glycolytic potential and meat quality from Dorper and Merino sheep of both sexes slaughtered at a commercial abattoir. Dorper (n=52) and Merino (n= 48) breeds aged eight years, consisting of 50 intact rams and 50 non-pregnant ewes were used in the study. The sheep used in the study were reared, transported and lairised under identical conditions. Blood samples were collected at exsanguination for the measurement of glucose, lactate and cortisol levels. Samples were also collected from the Muscularis longmissius thoracis et lumborum (LTL) for the measurement glycogen, lactate levels, pH decline and colour. Correlations amongst blood stress indicators, muscle metabolites and meat quality attributes were also determined. Sex and breed had no effect on muscle glycolytic potential, glycogen and lactate levels from Dorper and Merino sheep of both sexes at the abattoir. Although sex and breed had an effect on pre-slaughter stress indicators (lactate and cortisol) collected at exsanguination. Ewes had higher levels of blood lactate (7.4 3 ± 0.49 mmol/L) and cortisol (293.92 ± 14.32 nmol/L) than the rams which had (5.19 ± 0.49 mmol/L) and (179.50 ± 14.32 nmol/L) lactate and cortisol levels, respectively. Furthermore, higher levels of lactate were observed in Dorper (7.54 ± 0.42 mmol/L) compared to the Merino sheep (4.97 ± 0.49 mmol/L). Meat pH decline and colour were also significantly affected by sex and breed. Ewes had higher levels of at pH45 minutes post slaughter (7.05 ± 0.04), pH3 hours (6.45 ± 0.04) , pH24 hours (6.00 ± 0.03), a* (14.31 ± 0.33) , b* (8.84 ± 0.29), H* (31.47 ± 0.73) and C* (16.75 ± 0.24) compared to the rams which had pH45 minutes (6.44 ± 0.04), pH3 hours (6.12 ± 0.04), pH24 hours (5.88 ± 0.03), a* (12.25 ± 0.33), b* (7.00 ± 0.29), H* (29.36 ± 0.73) and C* (14.15 ± 0.42) values. Moreover, Merino sheep had higher levels of L* (38.17 ± 0.48) and H* (31.59 ± 0.74) compared to the Dorper which had (36.39 ± 0.46) and (29.33 ± 0.71) L* and H* values, respectively. Blood cortisol was also positively correlated (P < 0.05) to glucose (r = 0.27), lactate (r = 0.37) but was negatively correlated (P < 0.001) to meat lightness (r = -0.44). Furthermore, blood cortisol was positively correlated (P < 0.001) to pH45 (r = 0.34), pH24 (r =0.22), meat yellowness (r = 0.24) and chroma (r = 0.37), but was negatively correlated to meat lightness (r = -0.47). Glycolytic potential was positively correlated (P < 0.001) to muscle glycogen levels (r = 0.66) and muscle lactate (r = 0.71).
- Full Text:
- Date Issued: 2015
- Authors: Stempa, Thuthuzelwa
- Date: 2015
- Subjects: Slaughtering and slaughter-houses Meat -- Quality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/15310 , vital:40361
- Description: The objective of the study was to determine glycolytic potential and meat quality from Dorper and Merino sheep of both sexes slaughtered at a commercial abattoir. Dorper (n=52) and Merino (n= 48) breeds aged eight years, consisting of 50 intact rams and 50 non-pregnant ewes were used in the study. The sheep used in the study were reared, transported and lairised under identical conditions. Blood samples were collected at exsanguination for the measurement of glucose, lactate and cortisol levels. Samples were also collected from the Muscularis longmissius thoracis et lumborum (LTL) for the measurement glycogen, lactate levels, pH decline and colour. Correlations amongst blood stress indicators, muscle metabolites and meat quality attributes were also determined. Sex and breed had no effect on muscle glycolytic potential, glycogen and lactate levels from Dorper and Merino sheep of both sexes at the abattoir. Although sex and breed had an effect on pre-slaughter stress indicators (lactate and cortisol) collected at exsanguination. Ewes had higher levels of blood lactate (7.4 3 ± 0.49 mmol/L) and cortisol (293.92 ± 14.32 nmol/L) than the rams which had (5.19 ± 0.49 mmol/L) and (179.50 ± 14.32 nmol/L) lactate and cortisol levels, respectively. Furthermore, higher levels of lactate were observed in Dorper (7.54 ± 0.42 mmol/L) compared to the Merino sheep (4.97 ± 0.49 mmol/L). Meat pH decline and colour were also significantly affected by sex and breed. Ewes had higher levels of at pH45 minutes post slaughter (7.05 ± 0.04), pH3 hours (6.45 ± 0.04) , pH24 hours (6.00 ± 0.03), a* (14.31 ± 0.33) , b* (8.84 ± 0.29), H* (31.47 ± 0.73) and C* (16.75 ± 0.24) compared to the rams which had pH45 minutes (6.44 ± 0.04), pH3 hours (6.12 ± 0.04), pH24 hours (5.88 ± 0.03), a* (12.25 ± 0.33), b* (7.00 ± 0.29), H* (29.36 ± 0.73) and C* (14.15 ± 0.42) values. Moreover, Merino sheep had higher levels of L* (38.17 ± 0.48) and H* (31.59 ± 0.74) compared to the Dorper which had (36.39 ± 0.46) and (29.33 ± 0.71) L* and H* values, respectively. Blood cortisol was also positively correlated (P < 0.05) to glucose (r = 0.27), lactate (r = 0.37) but was negatively correlated (P < 0.001) to meat lightness (r = -0.44). Furthermore, blood cortisol was positively correlated (P < 0.001) to pH45 (r = 0.34), pH24 (r =0.22), meat yellowness (r = 0.24) and chroma (r = 0.37), but was negatively correlated to meat lightness (r = -0.47). Glycolytic potential was positively correlated (P < 0.001) to muscle glycogen levels (r = 0.66) and muscle lactate (r = 0.71).
- Full Text:
- Date Issued: 2015
Developing a GIS based method for school site identification in the rural Eastern Cape
- Authors: Swart, Conrad Dirk
- Date: 2015
- Subjects: Geographic information systems -- South Africa -- Eastern Cape , School sites -- South Africa -- Eastern Cape , School sites -- South Africa -- Eastern Cape -- Planning , Rural schools -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4891 , http://hdl.handle.net/10962/d1018939
- Description: Historically, South Africa has not had equal education in terms of funding, curriculum or physical resources and structures. These issues are still present in contemporary South Africa and none more so than the issues surrounding “mud schools”. Recently the Department of Basic Education (DBE) implemented a plan to eradicate inappropriate school structures using the Accelerated Schools Infrastructure Delivery Initiative program (ASIDI). Questions around effective placement of schools are now being asked. Using interviews and analysis of literature, this research developed criteria needed to determine how rural school sites are selected. Geographical Information Systems (GIS) was used to determine if current sites are in the most appropriate areas. The results of the research included a unique set of Eastern Cape criteria as well as an analysis of the current site selection methods used by the DBE. It also revealed that most of the schools are being constructed in acceptable areas. The main result that emerged from the research was that schools will be placed in areas where they are needed. Developing site selection criteria is still needed as South Africa seeks to reduce the education gap between rich and poor schools.
- Full Text:
- Date Issued: 2015
- Authors: Swart, Conrad Dirk
- Date: 2015
- Subjects: Geographic information systems -- South Africa -- Eastern Cape , School sites -- South Africa -- Eastern Cape , School sites -- South Africa -- Eastern Cape -- Planning , Rural schools -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4891 , http://hdl.handle.net/10962/d1018939
- Description: Historically, South Africa has not had equal education in terms of funding, curriculum or physical resources and structures. These issues are still present in contemporary South Africa and none more so than the issues surrounding “mud schools”. Recently the Department of Basic Education (DBE) implemented a plan to eradicate inappropriate school structures using the Accelerated Schools Infrastructure Delivery Initiative program (ASIDI). Questions around effective placement of schools are now being asked. Using interviews and analysis of literature, this research developed criteria needed to determine how rural school sites are selected. Geographical Information Systems (GIS) was used to determine if current sites are in the most appropriate areas. The results of the research included a unique set of Eastern Cape criteria as well as an analysis of the current site selection methods used by the DBE. It also revealed that most of the schools are being constructed in acceptable areas. The main result that emerged from the research was that schools will be placed in areas where they are needed. Developing site selection criteria is still needed as South Africa seeks to reduce the education gap between rich and poor schools.
- Full Text:
- Date Issued: 2015
Nanofiber immobilized cellulases and hemicellulases for fruit waste beneficiation
- Authors: Swart, Shanna
- Date: 2015
- Subjects: Agricultural wastes , Cellulase , Hemicellulose , Nanofibers , Electrospinning , Lignocellulose -- Biodegradation , Biomass conversion , Polysaccharides , Immobilized enzymes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4153 , http://hdl.handle.net/10962/d1017914
- Full Text:
- Date Issued: 2015
- Authors: Swart, Shanna
- Date: 2015
- Subjects: Agricultural wastes , Cellulase , Hemicellulose , Nanofibers , Electrospinning , Lignocellulose -- Biodegradation , Biomass conversion , Polysaccharides , Immobilized enzymes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4153 , http://hdl.handle.net/10962/d1017914
- Full Text:
- Date Issued: 2015
An investigation into the synergistic action of cellulose-degrading enzymes on complex substrates
- Authors: Thoresen, Mariska
- Date: 2015
- Subjects: Lignocellulose , Biomass energy , Cellulosic ethanol , Saccharomyces cerevisiae , Cellulase , Enzymes -- Biotechnology , Hydrolases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4154 , http://hdl.handle.net/10962/d1017915
- Full Text:
- Date Issued: 2015
- Authors: Thoresen, Mariska
- Date: 2015
- Subjects: Lignocellulose , Biomass energy , Cellulosic ethanol , Saccharomyces cerevisiae , Cellulase , Enzymes -- Biotechnology , Hydrolases
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4154 , http://hdl.handle.net/10962/d1017915
- Full Text:
- Date Issued: 2015
The importance of demographic trends in forecasting energy demand for private households in South africa
- Authors: Thubeni,Sinethemba Morine
- Date: 2015
- Subjects: Electric power consumption -- South Africa -- Forecasting Households -- South Africa , Demography -- Economic aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/45322 , vital:38570
- Description: South Africa’s residential energy use is expected to grow at approximately the same rate as the population. Efficient planning for energy demand by energy suppliers is therefore, essential since shortage of energy will negatively affect economic growth.This paper aims to investigate the causal relationship between population and house-hold energy demand on coal, gas, paraffin and wood for private households in South Africa. The adjusted R2, AIC (Akaike information criterion), the BIC (Bayesian information criterion) and standard deviation of residuals were used to investigate which model is the best to predict energy demand in each province using all available information. The results show that population and household energy demand are associated with each other. The findings imply that the causality between population growth and household energy demand is bidirectional in most cases.
- Full Text:
- Date Issued: 2015
- Authors: Thubeni,Sinethemba Morine
- Date: 2015
- Subjects: Electric power consumption -- South Africa -- Forecasting Households -- South Africa , Demography -- Economic aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/45322 , vital:38570
- Description: South Africa’s residential energy use is expected to grow at approximately the same rate as the population. Efficient planning for energy demand by energy suppliers is therefore, essential since shortage of energy will negatively affect economic growth.This paper aims to investigate the causal relationship between population and house-hold energy demand on coal, gas, paraffin and wood for private households in South Africa. The adjusted R2, AIC (Akaike information criterion), the BIC (Bayesian information criterion) and standard deviation of residuals were used to investigate which model is the best to predict energy demand in each province using all available information. The results show that population and household energy demand are associated with each other. The findings imply that the causality between population growth and household energy demand is bidirectional in most cases.
- Full Text:
- Date Issued: 2015
The acute impact of extended aerobic exercise on cognitive performance
- Tichiwanhuyi, Tendayi Stephen
- Authors: Tichiwanhuyi, Tendayi Stephen
- Date: 2015
- Subjects: Aerobic exercises , Cognition -- Effect of exercise on , Exercise -- Physiological aspects , Exercise -- Psychological aspects , Visual perception , Short-term memory , Motor ability , Human information processing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5173 , http://hdl.handle.net/10962/d1018182
- Description: Previous research has established a relationship between exercise and cognition, with more emphasis on this ascertained link, being made on the effects of long term and endurance exercise on cognition. However, enhanced worker effectiveness relies on a strong acute collaboration of physical and cognitive performance during task execution. As a result, the purpose of this study was to examine the acute effects of extended aerobic exercise on visual perception, working memory and motor responses, and to achieve this 24 participants (12 males and 12 females) aged between 18 and 24 participated in a 2 bout cycling exercise. The experimental condition had cycling resistance set at 60 percent of each individual’s maximum aerobic output and the control condition had zero cycling resistance, where three cognitive tasks were performed at 10 minute intervals during the cycling exercise. The results showed that exercise did not affect any significant changes on the cognitive performance measures over the entire cycling duration, as well as during the exercise phase (cycling with resistance). However, visual perception improved significantly (p<0.05) immediately after exercise. This led to the conclusion that moderate to high intensity exercise when performed for an extended duration, has selective effects on certain cognitive performance measures, with the time at which the performance is measured during the exercise being a relevant factor to be considered for maximum activation effects of the exercise.
- Full Text:
- Date Issued: 2015
- Authors: Tichiwanhuyi, Tendayi Stephen
- Date: 2015
- Subjects: Aerobic exercises , Cognition -- Effect of exercise on , Exercise -- Physiological aspects , Exercise -- Psychological aspects , Visual perception , Short-term memory , Motor ability , Human information processing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5173 , http://hdl.handle.net/10962/d1018182
- Description: Previous research has established a relationship between exercise and cognition, with more emphasis on this ascertained link, being made on the effects of long term and endurance exercise on cognition. However, enhanced worker effectiveness relies on a strong acute collaboration of physical and cognitive performance during task execution. As a result, the purpose of this study was to examine the acute effects of extended aerobic exercise on visual perception, working memory and motor responses, and to achieve this 24 participants (12 males and 12 females) aged between 18 and 24 participated in a 2 bout cycling exercise. The experimental condition had cycling resistance set at 60 percent of each individual’s maximum aerobic output and the control condition had zero cycling resistance, where three cognitive tasks were performed at 10 minute intervals during the cycling exercise. The results showed that exercise did not affect any significant changes on the cognitive performance measures over the entire cycling duration, as well as during the exercise phase (cycling with resistance). However, visual perception improved significantly (p<0.05) immediately after exercise. This led to the conclusion that moderate to high intensity exercise when performed for an extended duration, has selective effects on certain cognitive performance measures, with the time at which the performance is measured during the exercise being a relevant factor to be considered for maximum activation effects of the exercise.
- Full Text:
- Date Issued: 2015
Perceptions of indigenous people regarding mental illness at Cacadu District in the Eastern Cape Province of South Africa
- Authors: Tilolo, Lwazi Romeo
- Date: 2015
- Subjects: Indigenous peoples -- Mental health -- South Africa -- Eastern Cape Cultural psychiatry -- South Africa -- Eastern Cape Healers -- South Africa -- Eastern Cape , Ethnopsychology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2677 , vital:27983
- Description: Indigenous people tend to consult traditional healers when a family member manifests change in behaviour, whilst conventional treatment disregards spirituality when preserving mental health. The aim of the study was to explore the perceptions of indigenous people and the role of traditional healers in the management of mentally ill persons within the Cacadu District in the Eastern Cape Province of South Africa. The study has adopted a qualitative approach which was exploratory and descriptive in nature. The sample consisted of nine relatives of mental health care users (MHCUs) and six traditional healers. Ethical principles were also taken into consideration by the researcher during the process of conducting the study. Data were collected from two strata, namely, relatives of the MHCUs and the traditional healers and an interview guide was used to conduct in-depth face-to-face interviews. Data were analysed using Tesch’s method of data analysis. Four themes emerged from the data categories and sub categories were identified. According to the themes participants indicated the negative impact of mental illness; as a result they portrayed great desperation regarding the means of accessing a cure for mental illness. Some participants showed insufficient knowledge regarding mental illness and had different perceptions and beliefs regarding the origin of mental illness. Available literature was used to emphasise and support the views that were expressed by both traditional healers and relatives of MHCUs. It has been highlighted from this study that indigenous people of Cacadu District view mental illness as spiritual in origin but they include Western medication for the benefit of the mentally ill. In addition, the relatives of the MHCUs highlighted the economic burden as the major problem that results from mental illness.
- Full Text:
- Date Issued: 2015
- Authors: Tilolo, Lwazi Romeo
- Date: 2015
- Subjects: Indigenous peoples -- Mental health -- South Africa -- Eastern Cape Cultural psychiatry -- South Africa -- Eastern Cape Healers -- South Africa -- Eastern Cape , Ethnopsychology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/2677 , vital:27983
- Description: Indigenous people tend to consult traditional healers when a family member manifests change in behaviour, whilst conventional treatment disregards spirituality when preserving mental health. The aim of the study was to explore the perceptions of indigenous people and the role of traditional healers in the management of mentally ill persons within the Cacadu District in the Eastern Cape Province of South Africa. The study has adopted a qualitative approach which was exploratory and descriptive in nature. The sample consisted of nine relatives of mental health care users (MHCUs) and six traditional healers. Ethical principles were also taken into consideration by the researcher during the process of conducting the study. Data were collected from two strata, namely, relatives of the MHCUs and the traditional healers and an interview guide was used to conduct in-depth face-to-face interviews. Data were analysed using Tesch’s method of data analysis. Four themes emerged from the data categories and sub categories were identified. According to the themes participants indicated the negative impact of mental illness; as a result they portrayed great desperation regarding the means of accessing a cure for mental illness. Some participants showed insufficient knowledge regarding mental illness and had different perceptions and beliefs regarding the origin of mental illness. Available literature was used to emphasise and support the views that were expressed by both traditional healers and relatives of MHCUs. It has been highlighted from this study that indigenous people of Cacadu District view mental illness as spiritual in origin but they include Western medication for the benefit of the mentally ill. In addition, the relatives of the MHCUs highlighted the economic burden as the major problem that results from mental illness.
- Full Text:
- Date Issued: 2015
Photo-physicochemical studies and photodynamic therapy activity of indium and gallium phthalocyanines
- Tshangana, Charmaine Sesethu
- Authors: Tshangana, Charmaine Sesethu
- Date: 2015
- Subjects: Quantum dots , Nanoparticles , Photochemotherapy , Phthalocyanines
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4548 , http://hdl.handle.net/10962/d1017928
- Description: The potential toxicity of seven different types of quantum dots without shell (L-cysteine-CdTe, TGA-CdTe, MPA-CdTe, TGA-CdSe) and with the shell (GSH-CdSe@ZnS, GSH-CdTe@ZnS,) with different capping agents were evaluated. The growth inhibitory effects of the various quantum dots on human pancreatic BON cancerous cells were determined. The least cytotoxic of the various quantum dots synthesized and the one displaying the lowest growth inhibitory potential and no embryotoxicity was determined to be the GSH-CdSe@ZnS quantum dots. The GSH-CdSe@ZnS quantum dots were then conjugated to gallium, aluminium and indium octacarboxy phthalocyanine and the photophysical behaviour of the conjugates studied for potential use in photodynamic therapy and imaging applications. The sizes, morphology, thermal stability and confirmation of successful conjugation was determined using X-ray diffraction (XRD), transmission electron microscopy (TEM), thermogravimetric analysis (TGA) and Fourier transform infrared spectroscopy (FTIR), respectively. The study was extended by conjugating amino functionalized magnetic nanoparticles (Fe₃O₄) to indium octacarboxy phthalocyanine to study the photophysical behaviour of the conjugate as a potential bi-functional anti-cancer agent (hyperthermia and photodynamic therapy applications). A three-in-one multifunctional nanocomposite comprising of the quantum dots, magnetic nanoparticles and indium octacarboxy phthalocyanine was developed with the aim of developing a multifunctional composite that is able detect, monitor and treat cancer. All conjugates showed improved and enhanced photophysical behaviour. Finally, GSH-CdSe@ZnS conjugated to aluminium octacarboxy phthalocyanine was applied in human pancreatic carcinoid BON cells. The conjugates induced cell death dose-dependently.
- Full Text:
- Date Issued: 2015
- Authors: Tshangana, Charmaine Sesethu
- Date: 2015
- Subjects: Quantum dots , Nanoparticles , Photochemotherapy , Phthalocyanines
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4548 , http://hdl.handle.net/10962/d1017928
- Description: The potential toxicity of seven different types of quantum dots without shell (L-cysteine-CdTe, TGA-CdTe, MPA-CdTe, TGA-CdSe) and with the shell (GSH-CdSe@ZnS, GSH-CdTe@ZnS,) with different capping agents were evaluated. The growth inhibitory effects of the various quantum dots on human pancreatic BON cancerous cells were determined. The least cytotoxic of the various quantum dots synthesized and the one displaying the lowest growth inhibitory potential and no embryotoxicity was determined to be the GSH-CdSe@ZnS quantum dots. The GSH-CdSe@ZnS quantum dots were then conjugated to gallium, aluminium and indium octacarboxy phthalocyanine and the photophysical behaviour of the conjugates studied for potential use in photodynamic therapy and imaging applications. The sizes, morphology, thermal stability and confirmation of successful conjugation was determined using X-ray diffraction (XRD), transmission electron microscopy (TEM), thermogravimetric analysis (TGA) and Fourier transform infrared spectroscopy (FTIR), respectively. The study was extended by conjugating amino functionalized magnetic nanoparticles (Fe₃O₄) to indium octacarboxy phthalocyanine to study the photophysical behaviour of the conjugate as a potential bi-functional anti-cancer agent (hyperthermia and photodynamic therapy applications). A three-in-one multifunctional nanocomposite comprising of the quantum dots, magnetic nanoparticles and indium octacarboxy phthalocyanine was developed with the aim of developing a multifunctional composite that is able detect, monitor and treat cancer. All conjugates showed improved and enhanced photophysical behaviour. Finally, GSH-CdSe@ZnS conjugated to aluminium octacarboxy phthalocyanine was applied in human pancreatic carcinoid BON cells. The conjugates induced cell death dose-dependently.
- Full Text:
- Date Issued: 2015
Properties of traveling ionospheric disturbances (TIDs) over the Western Cape, South Africa
- Authors: Tyalimpi, Vumile Mike
- Date: 2015
- Subjects: Doppler radar , Geographic information systems , Traveling ionospheric disturbances -- south Africa , Ionospheric disturbances -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5557 , http://hdl.handle.net/10962/d1017901
- Description: Travelling Ionospheric Disturbances (TIDs) are said to be produced by atmospheric gravitational waves propagating through the neutral ionosphere. These are smaller in amplitude and period when compared to most ionospheric disturbances and hence more difficult to measure. Very little is known about the properties of the travelling ionospheric disturbances (TIDs) over the Southern Hemisphere regions since studies have been conducted mostly over the Northern Hemisphere regions. This study presents a framework, using a High Frequency (HF) Doppler radar to investigate the physical properties and the possible driving mechanisms of TIDs. This research focuses on studying the characteristics of the TIDs, such as period, velocity and temporal variations, using HF Doppler measurements taken in South Africa. By making use of a Wavelet Analysis technique, the TIDs’ characteristics were determined. A statistical summary on speed and direction of propagation of the observed TIDs was performed. The winter medium scale travelling ionospheric disturbances (MSTIDs) observed are generally faster than the summer MSTIDs. For all seasons, the MSTIDs had a preferred south-southwest direction of propagation. Most of the large scale travelling ionospheric disturbances (LSTIDs) were observed during the night and of these, the spring LSTIDs were fastest when compared to autumn and summer LSTIDs. The general direction of travel of the observed LSTIDs is south-southeast. Total Electron Content (TEC), derived from Global Positioning System (GPS) measurements, were used to validate some of the TID results obtained from the HF Doppler data. The Horizontal Wind Model (HWM07), magnetic K index, and solar terminators were used to determine the possible sources of the observed TIDs. Only 41% of the observed TIDs were successfully linked to their possible sources of excitation. The information gathered from this study will be valuable in future radio communications and will serve as means to improve the existing ionospheric models over the South African region.
- Full Text:
- Date Issued: 2015
- Authors: Tyalimpi, Vumile Mike
- Date: 2015
- Subjects: Doppler radar , Geographic information systems , Traveling ionospheric disturbances -- south Africa , Ionospheric disturbances -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5557 , http://hdl.handle.net/10962/d1017901
- Description: Travelling Ionospheric Disturbances (TIDs) are said to be produced by atmospheric gravitational waves propagating through the neutral ionosphere. These are smaller in amplitude and period when compared to most ionospheric disturbances and hence more difficult to measure. Very little is known about the properties of the travelling ionospheric disturbances (TIDs) over the Southern Hemisphere regions since studies have been conducted mostly over the Northern Hemisphere regions. This study presents a framework, using a High Frequency (HF) Doppler radar to investigate the physical properties and the possible driving mechanisms of TIDs. This research focuses on studying the characteristics of the TIDs, such as period, velocity and temporal variations, using HF Doppler measurements taken in South Africa. By making use of a Wavelet Analysis technique, the TIDs’ characteristics were determined. A statistical summary on speed and direction of propagation of the observed TIDs was performed. The winter medium scale travelling ionospheric disturbances (MSTIDs) observed are generally faster than the summer MSTIDs. For all seasons, the MSTIDs had a preferred south-southwest direction of propagation. Most of the large scale travelling ionospheric disturbances (LSTIDs) were observed during the night and of these, the spring LSTIDs were fastest when compared to autumn and summer LSTIDs. The general direction of travel of the observed LSTIDs is south-southeast. Total Electron Content (TEC), derived from Global Positioning System (GPS) measurements, were used to validate some of the TID results obtained from the HF Doppler data. The Horizontal Wind Model (HWM07), magnetic K index, and solar terminators were used to determine the possible sources of the observed TIDs. Only 41% of the observed TIDs were successfully linked to their possible sources of excitation. The information gathered from this study will be valuable in future radio communications and will serve as means to improve the existing ionospheric models over the South African region.
- Full Text:
- Date Issued: 2015
A light-emitting-diode pulsing system for measurement of time-resolved luminescence
- Authors: Uriri, Solomon Akpore
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20976 , http://hdl.handle.net/10962/5788
- Description: A new light-emitting-diode based pulsing system for measurement of time-resolved luminescence has been developed. The light-emitting-diodes are pulsed at various pulse-widths by a 555-timer operated as a monostable multivibrator. The light-emitting-diodes are arranged in a dural holder connected in parallel in sets of four, each containing four diodes in series. The output pulse from the 555-timer is fed into an 2N7000 MOSFET to produce a pulse-current of 500 mA to drive the set of 16 light-emitting-diodes. This size of current is sufficient to drive the diodes with each driven at a pulse-current of 90 mA with a possible maximum of 110 mA per diode. A multichannel scaler is used to trigger the pulsing system and to record data at selectable dwell times. The system is capable of generating pulse-widths in the range of microseconds upwards.
- Full Text:
- Date Issued: 2015
- Authors: Uriri, Solomon Akpore
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20976 , http://hdl.handle.net/10962/5788
- Description: A new light-emitting-diode based pulsing system for measurement of time-resolved luminescence has been developed. The light-emitting-diodes are pulsed at various pulse-widths by a 555-timer operated as a monostable multivibrator. The light-emitting-diodes are arranged in a dural holder connected in parallel in sets of four, each containing four diodes in series. The output pulse from the 555-timer is fed into an 2N7000 MOSFET to produce a pulse-current of 500 mA to drive the set of 16 light-emitting-diodes. This size of current is sufficient to drive the diodes with each driven at a pulse-current of 90 mA with a possible maximum of 110 mA per diode. A multichannel scaler is used to trigger the pulsing system and to record data at selectable dwell times. The system is capable of generating pulse-widths in the range of microseconds upwards.
- Full Text:
- Date Issued: 2015
Assignment of spin and parity to states in the nucleus ¹⁹⁶T1
- Authors: Uwitonze, Pierre Celestin
- Date: 2015
- Subjects: Nuclear spin , Particles (Nuclear physics) -- Chirality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5558 , http://hdl.handle.net/10962/d1017903
- Description: This work presents a study of high-spin states in the nucleus ¹⁹⁶Tl via γ-spectroscopy. ¹⁹⁶Tl was produced via the ¹⁹⁷Au(⁴He,5n) ¹⁹⁶Tl reaction at a beam energy of 63 MeV. The γ-γ coincidence measurements were performed using the AFRODITE γ-spectrometer array at iThemba LABS. The previous level scheme of ¹⁹⁶Tl has been extended up to an excitation of 4071 keV including 24 new γ-ray transitions. The spin and parity assignment to levels was made from the directional correlation of oriented nuclei (DCO) and linear polarization anisotropy ratios. An analysis of the B(M1)/B(E2) ratios was found to be consistent with the configuration of πh₉/₂♁vi₁₃/₂ for the ground state band. Although no chiral band was found in ¹⁹⁶TI and ¹⁹⁸TI.
- Full Text:
- Date Issued: 2015
- Authors: Uwitonze, Pierre Celestin
- Date: 2015
- Subjects: Nuclear spin , Particles (Nuclear physics) -- Chirality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5558 , http://hdl.handle.net/10962/d1017903
- Description: This work presents a study of high-spin states in the nucleus ¹⁹⁶Tl via γ-spectroscopy. ¹⁹⁶Tl was produced via the ¹⁹⁷Au(⁴He,5n) ¹⁹⁶Tl reaction at a beam energy of 63 MeV. The γ-γ coincidence measurements were performed using the AFRODITE γ-spectrometer array at iThemba LABS. The previous level scheme of ¹⁹⁶Tl has been extended up to an excitation of 4071 keV including 24 new γ-ray transitions. The spin and parity assignment to levels was made from the directional correlation of oriented nuclei (DCO) and linear polarization anisotropy ratios. An analysis of the B(M1)/B(E2) ratios was found to be consistent with the configuration of πh₉/₂♁vi₁₃/₂ for the ground state band. Although no chiral band was found in ¹⁹⁶TI and ¹⁹⁸TI.
- Full Text:
- Date Issued: 2015
In vivo and In vitro investigations to elucidate the associations of B-N-methylamino-L-alanine with proteins
- Authors: Van Onselen, Rianita
- Date: 2015
- Subjects: Cyanobacteria , Bioaccumulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/4923 , vital:20767
- Description: The cyanobacterially synthesized non-canonical amino acid β-N-methylamino-ʟ-alanine (BMAA) has been proposed to be a causative agent in the development of sporadic neurodegenerative diseases. This neurotoxin bioaccumulates and biomagnifies with increasing trophic levels in ecosystems by associating with proteins. It has been suggested that these associations with host proteins also serve as a reservoir from where BMAA is slowly released with normal protein catabolism, resulting in a continuous low level exposure. However, the nature of these associations remains poorly defined. The widely accepted hypothesis regarding the nature of these associations is that BMAA associates with proteins through primary incorporation into proteins with specific replacement of serine. In addition to excitotoxicity, BMAA misincorporation has been proposed as a potential mechanism of toxicity because of its link to protein tangle diseases. Interactions between BMAA and proteins that are not the result of misincorporation, have also been observed. However, the nature of these non-primary associations has not been investigated. This study focussed on establishing whether BMAA is misincorporated into host proteins with consequent toxicity, and on elucidating the nature of the BMAA-protein associations not linked to primary incorporation. In comparative studies between BMAA and canavanine, an arginine analogue known to misincorporate, exposure to BMAA did not result in any toxicity in prokaryotes or in an undifferentiated eukaryotic mammalian cell line, in contrast to what was observed upon canavanine exposure. Differentiation of the cell line with nerve growth factor to express glutamate receptors resulted in marked toxicity upon BMAA exposure, highlighting excitoxicity as the main mechanism of BMAA toxicity. Furthermore, it was demonstrated that BMAA interacts with free amino acids and proteins in the absence of de novo protein synthesis, causing enzyme inhibition and protein misfolding. It was concluded that BMAA does not interact with proteins through primary incorporation and that the observed associations are the result of an interaction between BMAA and amino acid side chains to form covalent bonds.
- Full Text:
- Date Issued: 2015
- Authors: Van Onselen, Rianita
- Date: 2015
- Subjects: Cyanobacteria , Bioaccumulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/4923 , vital:20767
- Description: The cyanobacterially synthesized non-canonical amino acid β-N-methylamino-ʟ-alanine (BMAA) has been proposed to be a causative agent in the development of sporadic neurodegenerative diseases. This neurotoxin bioaccumulates and biomagnifies with increasing trophic levels in ecosystems by associating with proteins. It has been suggested that these associations with host proteins also serve as a reservoir from where BMAA is slowly released with normal protein catabolism, resulting in a continuous low level exposure. However, the nature of these associations remains poorly defined. The widely accepted hypothesis regarding the nature of these associations is that BMAA associates with proteins through primary incorporation into proteins with specific replacement of serine. In addition to excitotoxicity, BMAA misincorporation has been proposed as a potential mechanism of toxicity because of its link to protein tangle diseases. Interactions between BMAA and proteins that are not the result of misincorporation, have also been observed. However, the nature of these non-primary associations has not been investigated. This study focussed on establishing whether BMAA is misincorporated into host proteins with consequent toxicity, and on elucidating the nature of the BMAA-protein associations not linked to primary incorporation. In comparative studies between BMAA and canavanine, an arginine analogue known to misincorporate, exposure to BMAA did not result in any toxicity in prokaryotes or in an undifferentiated eukaryotic mammalian cell line, in contrast to what was observed upon canavanine exposure. Differentiation of the cell line with nerve growth factor to express glutamate receptors resulted in marked toxicity upon BMAA exposure, highlighting excitoxicity as the main mechanism of BMAA toxicity. Furthermore, it was demonstrated that BMAA interacts with free amino acids and proteins in the absence of de novo protein synthesis, causing enzyme inhibition and protein misfolding. It was concluded that BMAA does not interact with proteins through primary incorporation and that the observed associations are the result of an interaction between BMAA and amino acid side chains to form covalent bonds.
- Full Text:
- Date Issued: 2015