The biology of suburban olive thrushes (Turdus olivaceus olivaceus) in the Eastern Cape, South Africa
- Authors: Bonnevie, Bo Tørris
- Date: 2005
- Subjects: Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5651 , http://hdl.handle.net/10962/d1005333 , Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Description: This study investigated the biology of the Olive Thrush Turdus olivaceus olivaceus in Grahamstown, South Africa from 1998 to 2003. Behavioural differences between males and females, parent-young interactions, development of fledglings, and the role of song and moult in territorial behaviour were investigated. Comparisons of biometrics, moult and survival were made using Olive Thrush ringing data from other regions. There were no significant differences in mass, wing length or survival rate between the Eastern and Western Cape provinces, but primary wing moult started earlier in the Western Cape and coincided with the end of the main breeding periods in both provinces. Both males and females of breeding pairs remained in and defended their territories throughout the year, but there was some evidence that territorial defence was strongest during the breeding periods. Roughly, every 100 eggs laid produce 50 fledglings. Out of these 20 to 30 reach the age of independence at approximately 50 days, and only five of these juvenile birds reach maturity. Adult survival was estimated at 80%, with a mean life expectancy of 4.5 years and a conservative estimate of maximum lifespan of 11 years. Using ringing data and museum specimens, the Olive Thrush was compared with the Karoo Thrush Turdus smithi, a former race of the Olive Thrush. Olive Thrushes had shorter bills and wings, but were heavier than Karoo Thrushes from the Cradock district. There were also differences in bill and eye-ring colouration between these populations. No morphological differences were found between the sexes in either species.
- Full Text:
- Date Issued: 2005
- Authors: Bonnevie, Bo Tørris
- Date: 2005
- Subjects: Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5651 , http://hdl.handle.net/10962/d1005333 , Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Description: This study investigated the biology of the Olive Thrush Turdus olivaceus olivaceus in Grahamstown, South Africa from 1998 to 2003. Behavioural differences between males and females, parent-young interactions, development of fledglings, and the role of song and moult in territorial behaviour were investigated. Comparisons of biometrics, moult and survival were made using Olive Thrush ringing data from other regions. There were no significant differences in mass, wing length or survival rate between the Eastern and Western Cape provinces, but primary wing moult started earlier in the Western Cape and coincided with the end of the main breeding periods in both provinces. Both males and females of breeding pairs remained in and defended their territories throughout the year, but there was some evidence that territorial defence was strongest during the breeding periods. Roughly, every 100 eggs laid produce 50 fledglings. Out of these 20 to 30 reach the age of independence at approximately 50 days, and only five of these juvenile birds reach maturity. Adult survival was estimated at 80%, with a mean life expectancy of 4.5 years and a conservative estimate of maximum lifespan of 11 years. Using ringing data and museum specimens, the Olive Thrush was compared with the Karoo Thrush Turdus smithi, a former race of the Olive Thrush. Olive Thrushes had shorter bills and wings, but were heavier than Karoo Thrushes from the Cradock district. There were also differences in bill and eye-ring colouration between these populations. No morphological differences were found between the sexes in either species.
- Full Text:
- Date Issued: 2005
Some aspects of the construction and implementation of error-correcting linear codes
- Authors: Booth, Geoffrey L
- Date: 1978
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20967 , http://hdl.handle.net/10962/5718
- Description: From Conclusion: The study of error-correcting codes is now approximately 25 years old. The first known publication on the subject was in 1949 by M. Golay, who later did much research into the subject of perfect codes. It has been recently established that all the perfect codes are known. R.W. Hamming presented his perfect single-error correcting codes in 1950, in ~n article in the Bell System Technical Journal. These codes turned out to be a special case of the powerful Bose-Chaudhuri codes which were discovered around 1960. Various work has been done on the theory of minimal redundancy of codes for a given error-correcting performance, by Plotkin, Gilbert, Varshamov and others, between 1950 and 1960. The binary BCH codes were found to be so close to the theoretical bounds that, to date, no better codes have been discovered. Although the BCH codes are extremely efficient in terms of ratio of information to check digits, they are not easily, decoded with a minimal amount of apparatus. Petersen in 1961 described an algorithm for d e coding BCH codes, but this was cumbersome compared with the majority-logic methods of Massey and others. Thus the search began for codes which are easily decoded with comparatively simple apparatus. The finite geometry codes which were described by Rudolph in a 1964 thesis were examples of codes which are easily decoded 58 by a small number of steps of majority logic. The simplicial codes of Saltzer are even better in this respect, since they can be decoded by a single step of majority logic, but are rather inefficient . The applications of coding theory have changed over the years, as well. The first computers were huge circuits of relays, which were unreliable and prone to errors. Error correcting codes were required to minimise the possibility of incorrect results. As vacuum tubes and later transistorised circuits made computers more reliable, the need for sophisticated and powerful codes in the computer world diminished. Other used presented themselves however, for example the control systems of unmanned space craft. Because of the difficulty of sending and receiving messages in this case, · very powerful codes were required. Other uses were found in transmission lines and telephone exchanges. The codes considered in this dissertation have, for the most part, been block codes for use on the binary symmetric channel. There are, however, several other applications, such as codes for use on an erasure channel, where bits are corrupted so as to be unrecognizable, rather than changed. There are also codes for burst-error correction, where chennel noise is not randomly distributed, but occurs in "bursts" a few bits long. Certain cyclic codes are of application in these cases. The theory of error correcting codes has risen from virtual non-existence in 1950 to a major and sophisticated part of communication theory. Judging from the articles in journals, it promises to be the subject of a great deal of research for some years to come.
- Full Text:
- Date Issued: 1978
- Authors: Booth, Geoffrey L
- Date: 1978
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20967 , http://hdl.handle.net/10962/5718
- Description: From Conclusion: The study of error-correcting codes is now approximately 25 years old. The first known publication on the subject was in 1949 by M. Golay, who later did much research into the subject of perfect codes. It has been recently established that all the perfect codes are known. R.W. Hamming presented his perfect single-error correcting codes in 1950, in ~n article in the Bell System Technical Journal. These codes turned out to be a special case of the powerful Bose-Chaudhuri codes which were discovered around 1960. Various work has been done on the theory of minimal redundancy of codes for a given error-correcting performance, by Plotkin, Gilbert, Varshamov and others, between 1950 and 1960. The binary BCH codes were found to be so close to the theoretical bounds that, to date, no better codes have been discovered. Although the BCH codes are extremely efficient in terms of ratio of information to check digits, they are not easily, decoded with a minimal amount of apparatus. Petersen in 1961 described an algorithm for d e coding BCH codes, but this was cumbersome compared with the majority-logic methods of Massey and others. Thus the search began for codes which are easily decoded with comparatively simple apparatus. The finite geometry codes which were described by Rudolph in a 1964 thesis were examples of codes which are easily decoded 58 by a small number of steps of majority logic. The simplicial codes of Saltzer are even better in this respect, since they can be decoded by a single step of majority logic, but are rather inefficient . The applications of coding theory have changed over the years, as well. The first computers were huge circuits of relays, which were unreliable and prone to errors. Error correcting codes were required to minimise the possibility of incorrect results. As vacuum tubes and later transistorised circuits made computers more reliable, the need for sophisticated and powerful codes in the computer world diminished. Other used presented themselves however, for example the control systems of unmanned space craft. Because of the difficulty of sending and receiving messages in this case, · very powerful codes were required. Other uses were found in transmission lines and telephone exchanges. The codes considered in this dissertation have, for the most part, been block codes for use on the binary symmetric channel. There are, however, several other applications, such as codes for use on an erasure channel, where bits are corrupted so as to be unrecognizable, rather than changed. There are also codes for burst-error correction, where chennel noise is not randomly distributed, but occurs in "bursts" a few bits long. Certain cyclic codes are of application in these cases. The theory of error correcting codes has risen from virtual non-existence in 1950 to a major and sophisticated part of communication theory. Judging from the articles in journals, it promises to be the subject of a great deal of research for some years to come.
- Full Text:
- Date Issued: 1978
Trophic ecology of breeding northern rockhopper penguins, Eudyptes Moseleyi, at Tristan da Cunha, South Atlantic Ocean
- Authors: Booth, Jenny Marie
- Date: 2012
- Subjects: Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5788 , http://hdl.handle.net/10962/d1005476 , Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Description: Northern Rockhopper penguin populations, Eudyptes moseleyi, are declining globally, and at Tristan da Cunha have undergone severe declines (> 90% in the last 130 years), the cause(s)of which are unknown. There is a paucity of data on this species in the South Atlantic Ocean, therefore their trophic ecology at Tristan da Cunha was studied, specifically focusing on diet, using stomach content analysis and stable isotope analysis (SIA), in conjunction with an analysis of diving behaviour, assessed using temperature-depth recorders. In order to evaluate the influence of gender on foraging, a morphometric investigation of sexual dimorphism was confirmed using molecular analysis. Additionally, plasma corticosterone levels were measured to examine breeding stage and presence of blood parasites as potential sources of stress during the breeding season. Northern Rockhopper penguins at Tristan da Cunha displayed a high degree of foraging plasticity, and fed opportunistically on a wide variety of prey, probably reflecting local small-scale changes in prey distribution. Zooplankton dominated (by mass) the diet of guard stage females, whereas small meso-pelagic fish (predominantly Photichthyidae)dominated diet of adults of both sexes in the crèche stage, with cephalopods contributing equally in both stages. Adults consistently fed chicks on lower-trophic level prey (assessed using SIA), probably zooplankton, than they consumed themselves indicating that the increasing demands of growing chicks were not met by adults through provisioning of higher- quality prey. SIA also indicated that adults foraged in different oceanic water masses when feeding for self-maintenance and for chick provisioning, thus temporally segregating the prey consumed for different purposes. It is possible that adults ‘selected’ these higher quality prey for themselves, or this may be a reflection of opportunistic behaviour. At Tristan da Cunha sexual dimorphism was observed in culmen dimensions (length, depth, width), with males having larger beaks and feeding on larger individuals of squid and fish than females. No sexual segregation in terms of foraging habitat (i.e. different water masses, based on ð¹³N or trophic level ð¹⁵N) during the breeding season or pre-moult period was revealed through SIA, and stomach content analysis revealed no sexual differences in prey species targeted. The results of SIA of feathers indicate that during the pre-moult period birds foraged in different water masses than during the breeding period. The fact that throughout the breeding season birds foraged in similar habitats suggests no intra-specific competition, despite both sexes feeding on the same prey.Birds were generally diurnal, daily foragers (12 – 16 hr trips), with extended trips (maximum duration 35.5 hours) and nocturnal diving recorded in a few individuals. Birds dived well within their physiological limits, predominantly utilising the upper 20m of the water column, employing two different strategies to target different prey items. Long, deep (30 – 40 m), energetically costly dives were performed when targeting energy-rich prey (fish), and a greater number of shorter, shallower (5 – 20 m), energy-efficient dives were performed when targeting prey with a lower energy content (zooplankton). More than half of the sampled study population were infected with the intra-cellular blood parasite Babesia, but infection showed no relationship to body mass, corticosterone levels or breeding success. Fasting birds showed no signs of elevated corticosterone levels, suggesting they had acquired sufficient fat reserves prior to breeding. Failed breeders did not exhibit elevated corticosterone levels. Tristan skuas, Catharacta antarctica hamiltoni, were observed to be a significant cause of egg and chick mortality. The absence of sex-based differences in foraging, and the absence of any signs of stress in relation to body mass, presence of Babesia or breeding stage, suggest that there are no obvious signs of high levels of stress or food limitations during breeding at Tristan da Cunha.
- Full Text:
- Date Issued: 2012
- Authors: Booth, Jenny Marie
- Date: 2012
- Subjects: Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5788 , http://hdl.handle.net/10962/d1005476 , Penguins -- Breeding -- Tristan da Cunha , Penguins -- Ecology -- Tristan da Cunha , Penguins -- Food
- Description: Northern Rockhopper penguin populations, Eudyptes moseleyi, are declining globally, and at Tristan da Cunha have undergone severe declines (> 90% in the last 130 years), the cause(s)of which are unknown. There is a paucity of data on this species in the South Atlantic Ocean, therefore their trophic ecology at Tristan da Cunha was studied, specifically focusing on diet, using stomach content analysis and stable isotope analysis (SIA), in conjunction with an analysis of diving behaviour, assessed using temperature-depth recorders. In order to evaluate the influence of gender on foraging, a morphometric investigation of sexual dimorphism was confirmed using molecular analysis. Additionally, plasma corticosterone levels were measured to examine breeding stage and presence of blood parasites as potential sources of stress during the breeding season. Northern Rockhopper penguins at Tristan da Cunha displayed a high degree of foraging plasticity, and fed opportunistically on a wide variety of prey, probably reflecting local small-scale changes in prey distribution. Zooplankton dominated (by mass) the diet of guard stage females, whereas small meso-pelagic fish (predominantly Photichthyidae)dominated diet of adults of both sexes in the crèche stage, with cephalopods contributing equally in both stages. Adults consistently fed chicks on lower-trophic level prey (assessed using SIA), probably zooplankton, than they consumed themselves indicating that the increasing demands of growing chicks were not met by adults through provisioning of higher- quality prey. SIA also indicated that adults foraged in different oceanic water masses when feeding for self-maintenance and for chick provisioning, thus temporally segregating the prey consumed for different purposes. It is possible that adults ‘selected’ these higher quality prey for themselves, or this may be a reflection of opportunistic behaviour. At Tristan da Cunha sexual dimorphism was observed in culmen dimensions (length, depth, width), with males having larger beaks and feeding on larger individuals of squid and fish than females. No sexual segregation in terms of foraging habitat (i.e. different water masses, based on ð¹³N or trophic level ð¹⁵N) during the breeding season or pre-moult period was revealed through SIA, and stomach content analysis revealed no sexual differences in prey species targeted. The results of SIA of feathers indicate that during the pre-moult period birds foraged in different water masses than during the breeding period. The fact that throughout the breeding season birds foraged in similar habitats suggests no intra-specific competition, despite both sexes feeding on the same prey.Birds were generally diurnal, daily foragers (12 – 16 hr trips), with extended trips (maximum duration 35.5 hours) and nocturnal diving recorded in a few individuals. Birds dived well within their physiological limits, predominantly utilising the upper 20m of the water column, employing two different strategies to target different prey items. Long, deep (30 – 40 m), energetically costly dives were performed when targeting energy-rich prey (fish), and a greater number of shorter, shallower (5 – 20 m), energy-efficient dives were performed when targeting prey with a lower energy content (zooplankton). More than half of the sampled study population were infected with the intra-cellular blood parasite Babesia, but infection showed no relationship to body mass, corticosterone levels or breeding success. Fasting birds showed no signs of elevated corticosterone levels, suggesting they had acquired sufficient fat reserves prior to breeding. Failed breeders did not exhibit elevated corticosterone levels. Tristan skuas, Catharacta antarctica hamiltoni, were observed to be a significant cause of egg and chick mortality. The absence of sex-based differences in foraging, and the absence of any signs of stress in relation to body mass, presence of Babesia or breeding stage, suggest that there are no obvious signs of high levels of stress or food limitations during breeding at Tristan da Cunha.
- Full Text:
- Date Issued: 2012
The Birds' River dolerite complex
- Authors: Booth, P W K
- Date: 1971
- Subjects: Diabase , Diabase -- South Africa -- Cape of Good Hope -- Dordrecht. , Igneous rocks -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5043 , http://hdl.handle.net/10962/d1007664 , Diabase , Diabase -- South Africa -- Cape of Good Hope -- Dordrecht. , Igneous rocks -- South Africa
- Description: A plug-like intrusion of Karroo dolerite, near Dordrecht in the Eastern Cape of the Republic, is described. Field mapping with the, aid of aerial photographs has revealed that the contact of the intrusion, for the most part, dips very steeply outwards. In the south- eastern and eastern areas, however, sheet- or sill-like forms appear to be given off from the main intrusion. In plan view the intrusion is roughly oval shaped, its longer axis being aligned in a north-westerly direction. Its surface area measures approximately 60 square kilometres (24 square miles). A large number of xenoliths composed exclusively of Stormberg sediments, pyroclastic rocks and minor lavas, are to be found cropping out within the dolerite intrusion. These xenoliths, many of which occur in positions far above or below their normal stratigraphic elevation, are extremely variable in size - the largest having an area of approximately 15 square kilometres (6 square miles). The xenoliths represent fragments of the original "roof" of sediments and pyroclastics which have collapsed into and been engulfed by the dolerite magma. This type of dolerite intrusion is known as a "belljar" intrusion. A superficial classification of the dolerites, based chiefly on textural and certain mineralogical features, is presented. In the area surrounding the main intrusion are a number of dolerite dikes and sheets. The youngest phase of igneous activity is represented by the Dragon's Back dike, which cuts across the complex in a north-westerly direction. Several veining phenomena, as well as an interesting variety of metamorphic and metasomatic rocks, are associated with the main dolerite intrusion. Six diatremes are situated in the vicinity of the intrusion. Pyroclastic rocks are represented by a variety of types, and are to be found outside the area of the intrusion, and as xenoliths within it. A tentative interpretation of the mechanism of formation of the intrusion, which appears to be related to volcanic activity and cauldron subsidence, is presented.
- Full Text:
- Date Issued: 1971
- Authors: Booth, P W K
- Date: 1971
- Subjects: Diabase , Diabase -- South Africa -- Cape of Good Hope -- Dordrecht. , Igneous rocks -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5043 , http://hdl.handle.net/10962/d1007664 , Diabase , Diabase -- South Africa -- Cape of Good Hope -- Dordrecht. , Igneous rocks -- South Africa
- Description: A plug-like intrusion of Karroo dolerite, near Dordrecht in the Eastern Cape of the Republic, is described. Field mapping with the, aid of aerial photographs has revealed that the contact of the intrusion, for the most part, dips very steeply outwards. In the south- eastern and eastern areas, however, sheet- or sill-like forms appear to be given off from the main intrusion. In plan view the intrusion is roughly oval shaped, its longer axis being aligned in a north-westerly direction. Its surface area measures approximately 60 square kilometres (24 square miles). A large number of xenoliths composed exclusively of Stormberg sediments, pyroclastic rocks and minor lavas, are to be found cropping out within the dolerite intrusion. These xenoliths, many of which occur in positions far above or below their normal stratigraphic elevation, are extremely variable in size - the largest having an area of approximately 15 square kilometres (6 square miles). The xenoliths represent fragments of the original "roof" of sediments and pyroclastics which have collapsed into and been engulfed by the dolerite magma. This type of dolerite intrusion is known as a "belljar" intrusion. A superficial classification of the dolerites, based chiefly on textural and certain mineralogical features, is presented. In the area surrounding the main intrusion are a number of dolerite dikes and sheets. The youngest phase of igneous activity is represented by the Dragon's Back dike, which cuts across the complex in a north-westerly direction. Several veining phenomena, as well as an interesting variety of metamorphic and metasomatic rocks, are associated with the main dolerite intrusion. Six diatremes are situated in the vicinity of the intrusion. Pyroclastic rocks are represented by a variety of types, and are to be found outside the area of the intrusion, and as xenoliths within it. A tentative interpretation of the mechanism of formation of the intrusion, which appears to be related to volcanic activity and cauldron subsidence, is presented.
- Full Text:
- Date Issued: 1971
The ichthyofauna associated with Taylor's salt marsh, Kariega estuary (Eastern Cape), South Africa
- Authors: Booth, Tara Loren
- Date: 2009
- Subjects: Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5710 , http://hdl.handle.net/10962/d1005396 , Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Description: The spatial and temporal patterns in the ichthyofaunal community composition and structure in Taylor’s salt marsh and adjacent eelgrass beds (Zostera capensis) in the Kariega Estuary, was investigated every two months between May 2006 and March 2007. Total ichthyofaunal abundances and biomass in the salt marsh ranged between 0.55 and 21.7 ind.10m-2 and between 0.03 and 1.9 g.wwt.10m⁻², respectively. There were no significant spatial patterns in the values evident (P > 0.05 in all cases) although seasonal trends were marked, with highest values consistently recorded during the warmer summer months. Investigations into the community structure showed that the ichthyofaunal community within salt marsh was composed almost exclusively of juveniles of estuarine dependant (category II) species, mainly juvenile Mugilidae (<20mm SL) that comprised up to 83% of all fish sampled. Hierarchical cluster analysis and multidimensional scaling did not identify any distinct spatial patterns in the ichthyofaunal community within the salt marsh. The absence of any spatial patterns in the community structure could be related to the absence of any significant spatial patterns in the physico-chemical (temperature, salinity and dissolved oxygen concentrations) and biological (water column and microphytobenthic algal concentrations) variables within the salt marsh (P > 0.05 in all cases). Temporal shifts in the ichthyofaunal community structure within the salt marsh were, however, evident largely reflecting the breeding cycles of individual species within the sub-region. Within the adjacent eelgrass beds, total ichthyofaunal abundances and biomass ranged between 8.4 and 49.4 ind.10m⁻² and between 2.9 and 94.5 g.wwt.10m⁻², respectively. Once again there were no distinct spatial patterns in the abundance and biomass values evident although seasonal patterns were marked. In contrast to the salt marsh, within the in the eelgrass community, there were a large number of adult individuals recorded. Again category II species, the estuarine dependent species, were numerically and gravimetrically dominant. The dominance of category II species reflects the marine dominance of Kariega Estuary. The remaining estuarine utilisation categories did not contribute significantly to abundance or standing stock totals. Hierarchical cluster analysis showed that the salt marsh and eelgrass beds represented two distinct habitats within the Kariega Estuary. Within the salt marsh, the family Mugilidae were numerically dominant contributing 83% of the total catch. Within the eelgrass beds, the sparid, Rhabdosargus holubi and representatives of the family Gobidae contributed 36.3% and 33.9% respectively to the total catch. Estuaries with a wide range of microhabitats have been demonstrated to support a more diverse ichthyofaunal community. Shallow water habitats in general are important areas for juvenile fish within estuaries. Taylor’s salt marsh provides an alternative shallow water habitat, occupied by a distinct ichthyofaunal community composition, with increased food availability and decreased predation pressure, for a wide range of fish species.
- Full Text:
- Date Issued: 2009
- Authors: Booth, Tara Loren
- Date: 2009
- Subjects: Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5710 , http://hdl.handle.net/10962/d1005396 , Fishes -- South Africa -- Eastern Cape , Estuaries -- South Africa -- Eastern Cape , Fish communities -- South Africa -- Eastern Cape , Salt marsh animals -- South Africa -- Eastern Cape , Eelgrass -- South Africa -- Eastern Cape , Gray mullets -- South Africa -- Eastern Cape
- Description: The spatial and temporal patterns in the ichthyofaunal community composition and structure in Taylor’s salt marsh and adjacent eelgrass beds (Zostera capensis) in the Kariega Estuary, was investigated every two months between May 2006 and March 2007. Total ichthyofaunal abundances and biomass in the salt marsh ranged between 0.55 and 21.7 ind.10m-2 and between 0.03 and 1.9 g.wwt.10m⁻², respectively. There were no significant spatial patterns in the values evident (P > 0.05 in all cases) although seasonal trends were marked, with highest values consistently recorded during the warmer summer months. Investigations into the community structure showed that the ichthyofaunal community within salt marsh was composed almost exclusively of juveniles of estuarine dependant (category II) species, mainly juvenile Mugilidae (<20mm SL) that comprised up to 83% of all fish sampled. Hierarchical cluster analysis and multidimensional scaling did not identify any distinct spatial patterns in the ichthyofaunal community within the salt marsh. The absence of any spatial patterns in the community structure could be related to the absence of any significant spatial patterns in the physico-chemical (temperature, salinity and dissolved oxygen concentrations) and biological (water column and microphytobenthic algal concentrations) variables within the salt marsh (P > 0.05 in all cases). Temporal shifts in the ichthyofaunal community structure within the salt marsh were, however, evident largely reflecting the breeding cycles of individual species within the sub-region. Within the adjacent eelgrass beds, total ichthyofaunal abundances and biomass ranged between 8.4 and 49.4 ind.10m⁻² and between 2.9 and 94.5 g.wwt.10m⁻², respectively. Once again there were no distinct spatial patterns in the abundance and biomass values evident although seasonal patterns were marked. In contrast to the salt marsh, within the in the eelgrass community, there were a large number of adult individuals recorded. Again category II species, the estuarine dependent species, were numerically and gravimetrically dominant. The dominance of category II species reflects the marine dominance of Kariega Estuary. The remaining estuarine utilisation categories did not contribute significantly to abundance or standing stock totals. Hierarchical cluster analysis showed that the salt marsh and eelgrass beds represented two distinct habitats within the Kariega Estuary. Within the salt marsh, the family Mugilidae were numerically dominant contributing 83% of the total catch. Within the eelgrass beds, the sparid, Rhabdosargus holubi and representatives of the family Gobidae contributed 36.3% and 33.9% respectively to the total catch. Estuaries with a wide range of microhabitats have been demonstrated to support a more diverse ichthyofaunal community. Shallow water habitats in general are important areas for juvenile fish within estuaries. Taylor’s salt marsh provides an alternative shallow water habitat, occupied by a distinct ichthyofaunal community composition, with increased food availability and decreased predation pressure, for a wide range of fish species.
- Full Text:
- Date Issued: 2009
Rhenium(V)-Imido complexes with potentially multidentate ligands containing the amino group
- Authors: Booysen, Irvin Noel
- Date: 2007
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10385 , http://hdl.handle.net/10948/479 , Rhenium , Ligands
- Description: The complex trans-[Re(dab)Cl3(PPh3)2] (H2dab=1,2-diaminobenzene) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2dab in ethanol. The ligand dab is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. The complex trans-[Re(ada)Cl3(PPh3)2] (H2ada=2-aminodiphenylamine) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2ada in acetonitrile. The ligand ada is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. Surprisingly, the Re-Cl bond length trans to the Re=N bond is shorter than the two equatorial Re-Cl bond lengths. The reaction of equimolar quantities of cis-[ReO2I(PPh3)2] with 5,6-diamino-1,3- dimethyluracil (H2ddd) in acetonitrile led to the formation of [Re(ddd)(Hddd)I(PPh3)2](ReO4). The X-ray crystal structure shows that the ligand ddd is coordinated monodentately through the doubly deprotonated amino nitrogen and is therefore present as an imide. The chelate Hddd is coordinated bidentately via the neutral amino nitrogen, which is coordinated trans to the imido nitrogen, and the singly deprotonated amido nitrogen, trans to the iodide. The reaction of equimolar quantities of [NH4(ReO4)] with H2ddd in methanol under reflux conditions led to the isolation of [C12H12N6O4] as only product. The [ReO4]- ion is therefore instrumental in the formation of [C12H12N6O4], and since the product contains no rhenium in any oxidation state, the conclusion is that [ReO4]- catalyses the oxidative deamination of H2ddd. The X-ray crystal structure consists of two centrosymmetric, tricyclic rings, comprising a central pyrazine ring and two terminal pyrimidine rings. The reaction of a twofold molar excess of H2apb (H2apb=2-(2-aminophenyl)-1Hbenzimidazole) with trans-[ReO2(py)4]Cl in ethanol gave the green product of the formulation [ReO(Hapb)(apb)] in good yield. The rhenium atom lies in a distorted trigonal-bipyramidal environment. The two imidazole N(2) atoms lie in the apical positions trans to each other, with the oxo-oxygen and two amido N(1) atoms in the trigonal plane. The complex has C2-symmetry. The two amino groups are singly deprotonated and provide a negative charge each, so that they are coordinated as amides. The oxo group provides two negative charges. In order to obtain electroneutrality for the rhenium(V) complex, the two coordinated imidazole nitrogens provide one negative charge. The complex salt trans-[Re(mps)Cl(PPh3)2](ReO4) (H3mps=N-(2-amino-3- methylphenyl)salicylideneimine) was prepared by the reaction of trans- [ReOCl3(PPh3)2] with a twofold molar excess of H3mps. The X-ray crystal structure shows that the trianionic ligand mps acts as a tridentate chelate via the doubly deprotonated amino nitrogen (which is present in trans- [Re(mps)Cl(PPh3)2](ReO4) as an imide), the neutral imino nitrogen and the deprotonated phenolic oxygen. The [ReO4]- anion has approximately regular tetrahedral geometry. Two significant hydrogen bonds are formed between two of the perrhenyl oxygens and the water of crystallization. The six-coordinated complex cis-[Re(mps)Cl2(PPh3)2] was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps in benzene. The Xray crystal structure shows that the mps ligand coordinates as a tridentate chelate via the doubly deprotonated 2-amino nitrogen, the neutral imino nitrogen and the phenolate oxygen. The imide and phenolate oxygen coordinate trans to each other in a distorted octahedral geometry around the rhenium(V) centre, with the two chlorides in cis positions.
- Full Text:
- Date Issued: 2007
- Authors: Booysen, Irvin Noel
- Date: 2007
- Subjects: Rhenium , Ligands
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10385 , http://hdl.handle.net/10948/479 , Rhenium , Ligands
- Description: The complex trans-[Re(dab)Cl3(PPh3)2] (H2dab=1,2-diaminobenzene) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2dab in ethanol. The ligand dab is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. The complex trans-[Re(ada)Cl3(PPh3)2] (H2ada=2-aminodiphenylamine) was prepared from the reaction of trans-[ReOCl3(PPh3)2] with H2ada in acetonitrile. The ligand ada is coordinated to the rhenium(V) centre through a dianionic imido nitrogen only, in a distorted octahedral coordination geometry around the metal ion. Surprisingly, the Re-Cl bond length trans to the Re=N bond is shorter than the two equatorial Re-Cl bond lengths. The reaction of equimolar quantities of cis-[ReO2I(PPh3)2] with 5,6-diamino-1,3- dimethyluracil (H2ddd) in acetonitrile led to the formation of [Re(ddd)(Hddd)I(PPh3)2](ReO4). The X-ray crystal structure shows that the ligand ddd is coordinated monodentately through the doubly deprotonated amino nitrogen and is therefore present as an imide. The chelate Hddd is coordinated bidentately via the neutral amino nitrogen, which is coordinated trans to the imido nitrogen, and the singly deprotonated amido nitrogen, trans to the iodide. The reaction of equimolar quantities of [NH4(ReO4)] with H2ddd in methanol under reflux conditions led to the isolation of [C12H12N6O4] as only product. The [ReO4]- ion is therefore instrumental in the formation of [C12H12N6O4], and since the product contains no rhenium in any oxidation state, the conclusion is that [ReO4]- catalyses the oxidative deamination of H2ddd. The X-ray crystal structure consists of two centrosymmetric, tricyclic rings, comprising a central pyrazine ring and two terminal pyrimidine rings. The reaction of a twofold molar excess of H2apb (H2apb=2-(2-aminophenyl)-1Hbenzimidazole) with trans-[ReO2(py)4]Cl in ethanol gave the green product of the formulation [ReO(Hapb)(apb)] in good yield. The rhenium atom lies in a distorted trigonal-bipyramidal environment. The two imidazole N(2) atoms lie in the apical positions trans to each other, with the oxo-oxygen and two amido N(1) atoms in the trigonal plane. The complex has C2-symmetry. The two amino groups are singly deprotonated and provide a negative charge each, so that they are coordinated as amides. The oxo group provides two negative charges. In order to obtain electroneutrality for the rhenium(V) complex, the two coordinated imidazole nitrogens provide one negative charge. The complex salt trans-[Re(mps)Cl(PPh3)2](ReO4) (H3mps=N-(2-amino-3- methylphenyl)salicylideneimine) was prepared by the reaction of trans- [ReOCl3(PPh3)2] with a twofold molar excess of H3mps. The X-ray crystal structure shows that the trianionic ligand mps acts as a tridentate chelate via the doubly deprotonated amino nitrogen (which is present in trans- [Re(mps)Cl(PPh3)2](ReO4) as an imide), the neutral imino nitrogen and the deprotonated phenolic oxygen. The [ReO4]- anion has approximately regular tetrahedral geometry. Two significant hydrogen bonds are formed between two of the perrhenyl oxygens and the water of crystallization. The six-coordinated complex cis-[Re(mps)Cl2(PPh3)2] was prepared by the reaction of trans-[ReOCl3(PPh3)2] with a twofold molar excess of H3mps in benzene. The Xray crystal structure shows that the mps ligand coordinates as a tridentate chelate via the doubly deprotonated 2-amino nitrogen, the neutral imino nitrogen and the phenolate oxygen. The imide and phenolate oxygen coordinate trans to each other in a distorted octahedral geometry around the rhenium(V) centre, with the two chlorides in cis positions.
- Full Text:
- Date Issued: 2007
An appraisal of warm temperate mangrove estuaries as food patches using zooplankton and RNA: DNA ratios of Gilchristella aestuaria larvae as indicators
- Authors: Bornman, Eugin
- Date: 2018
- Subjects: Mangrove swamps Fishes -- Larvae , Mangrove ecology , Zooplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17908 , vital:28481
- Description: Mangrove habitats are considered as the ideal fish nursery as they are known to increase the growth and survival of juvenile fishes by providing enhanced food availability and protection. However, most studies have focused on tropical mangroves with a few recent warm temperate studies finding conflicting results. Furthermore, the nursery value of South African mangroves to fishes remain understudied in subtropical areas, while warm temperate mangroves are yet to be evaluated. This study aimed to assess whether mangrove presence leads to any advantage to the larvae of an important estuarine resident fish species, Gilchristella aestuaria, by comparing the food patch quality of South African warm temperate mangrove and non-mangrove estuaries. Results indicate that larvae fed primarily on the dominant prey species, Pseudodiaptomus hessei, Paracrtia longipatella, and Acartiella natalensis. However, postflexion larvae consumed more of the larger species, P. hessei, within the two mangrove estuaries (16.09 %V in Nahoon and 13.79 %V in Xhora) than the two nonmangrove estuaries (12.20 %V in Gonubie and 7.05 %V in Qora), despite other prey species occurring at similar densities. Results indicate that mangrove habitats acted as sediment sinks, slightly reducing the turbidity of these estuaries which resulted in postflexion larvae actively selecting larger, more nutritious prey, which in turn, significantly increased their individual instantaneous growth rates (0.11 ± 0.21 Gi) when compared to postflexion larvae in non-mangrove estuaries (0.09 ± 0.12 Gi). This study found that mangrove presence was significantly related to postflexion larval densities when coupled with abiotic (such as temperature and turbidity) and biotic factors (such as predator-prey interactions). Understanding the spatial and temporal dynamics, predator-prey interactions as well as the growth and survival of G. aestuaria is particularly important as they are key zooplanktivores that are prey to other species in estuarine food webs.
- Full Text:
- Date Issued: 2018
- Authors: Bornman, Eugin
- Date: 2018
- Subjects: Mangrove swamps Fishes -- Larvae , Mangrove ecology , Zooplankton
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/17908 , vital:28481
- Description: Mangrove habitats are considered as the ideal fish nursery as they are known to increase the growth and survival of juvenile fishes by providing enhanced food availability and protection. However, most studies have focused on tropical mangroves with a few recent warm temperate studies finding conflicting results. Furthermore, the nursery value of South African mangroves to fishes remain understudied in subtropical areas, while warm temperate mangroves are yet to be evaluated. This study aimed to assess whether mangrove presence leads to any advantage to the larvae of an important estuarine resident fish species, Gilchristella aestuaria, by comparing the food patch quality of South African warm temperate mangrove and non-mangrove estuaries. Results indicate that larvae fed primarily on the dominant prey species, Pseudodiaptomus hessei, Paracrtia longipatella, and Acartiella natalensis. However, postflexion larvae consumed more of the larger species, P. hessei, within the two mangrove estuaries (16.09 %V in Nahoon and 13.79 %V in Xhora) than the two nonmangrove estuaries (12.20 %V in Gonubie and 7.05 %V in Qora), despite other prey species occurring at similar densities. Results indicate that mangrove habitats acted as sediment sinks, slightly reducing the turbidity of these estuaries which resulted in postflexion larvae actively selecting larger, more nutritious prey, which in turn, significantly increased their individual instantaneous growth rates (0.11 ± 0.21 Gi) when compared to postflexion larvae in non-mangrove estuaries (0.09 ± 0.12 Gi). This study found that mangrove presence was significantly related to postflexion larval densities when coupled with abiotic (such as temperature and turbidity) and biotic factors (such as predator-prey interactions). Understanding the spatial and temporal dynamics, predator-prey interactions as well as the growth and survival of G. aestuaria is particularly important as they are key zooplanktivores that are prey to other species in estuarine food webs.
- Full Text:
- Date Issued: 2018
Production of biologically active recombinant HIV-1 protease and intehrase for the purpose of screening medicianl plant extracts
- Authors: Bosch, Janine
- Date: 2009
- Subjects: Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10325 , http://hdl.handle.net/10948/1056 , Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: Human immunodeficiency virus (HIV) and its gradual weakening of the immune system is an ever growing threat. Acquired immune deficiency syndrome (AIDS), the final stage of HIV, renders a person vulnerable to various opportunistic infections, which in the end lead to death. Apart from intensive vaccine studies, treatment research mainly focuses on preventing the individual HIV enzymes (reverse transcriptase, integrase and protease) from performing their functions. Entry inhibitors, however, block viral entry into the cell, while antisense drugs lock onto the viral genome to keep it from functioning. In this study production of active recombinant HIV-1 protease and integrase was attempted for future drug screening programs. HIV-1 protease was cloned into a pET28b(+) vector and expressed in ROSETTA(DE3)pLysS cells. The protein was purified using a nickel-affinity column utilizing the hexa-histidine tag encoded by the vector. Gel filtration chromatography was attempted after refolding of the protease, but protease yield seemed to decrease with the additional purification step. Partially purified protease was characterized with kinetic studies. Kinetic parameters of HIV-1 protease were determined to be Km = 592 μM, Vmax = 0.59 μM/min and kcat = 31 s-1. HIV-1 integrase, which was cloned into a pET15b vector, was expressed in E. coli BL21(DE3) cells. The coding sequence had been mutated to introduce the amino acid substitutions F185K and C280S, increasing solubility of the protein. The first step in purification of this protein was nickel-affinity chromatography, after which cation exchange chromatography was attempted. HIV-1 integrase concentration was low throughout experiments and no clear elution from the cation exchange column could be observed. A non-radioactive enzyme linked HIV-1 integrase assay failed to detect integrase activity. Modifications to future studies of the integrase are suggested in the chapter involved.
- Full Text:
- Date Issued: 2009
- Authors: Bosch, Janine
- Date: 2009
- Subjects: Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10325 , http://hdl.handle.net/10948/1056 , Medicinal plants -- South Africa , HIV infections -- Alternative treatment -- South Africa , Materia medica, Vegetable -- South Africa
- Description: Human immunodeficiency virus (HIV) and its gradual weakening of the immune system is an ever growing threat. Acquired immune deficiency syndrome (AIDS), the final stage of HIV, renders a person vulnerable to various opportunistic infections, which in the end lead to death. Apart from intensive vaccine studies, treatment research mainly focuses on preventing the individual HIV enzymes (reverse transcriptase, integrase and protease) from performing their functions. Entry inhibitors, however, block viral entry into the cell, while antisense drugs lock onto the viral genome to keep it from functioning. In this study production of active recombinant HIV-1 protease and integrase was attempted for future drug screening programs. HIV-1 protease was cloned into a pET28b(+) vector and expressed in ROSETTA(DE3)pLysS cells. The protein was purified using a nickel-affinity column utilizing the hexa-histidine tag encoded by the vector. Gel filtration chromatography was attempted after refolding of the protease, but protease yield seemed to decrease with the additional purification step. Partially purified protease was characterized with kinetic studies. Kinetic parameters of HIV-1 protease were determined to be Km = 592 μM, Vmax = 0.59 μM/min and kcat = 31 s-1. HIV-1 integrase, which was cloned into a pET15b vector, was expressed in E. coli BL21(DE3) cells. The coding sequence had been mutated to introduce the amino acid substitutions F185K and C280S, increasing solubility of the protein. The first step in purification of this protein was nickel-affinity chromatography, after which cation exchange chromatography was attempted. HIV-1 integrase concentration was low throughout experiments and no clear elution from the cation exchange column could be observed. A non-radioactive enzyme linked HIV-1 integrase assay failed to detect integrase activity. Modifications to future studies of the integrase are suggested in the chapter involved.
- Full Text:
- Date Issued: 2009
Ionospheric total electron content variability and its influence in radio astronomy
- Authors: Botai, Ondego Joel
- Date: 2006
- Subjects: Electrons , Global Positioning System , Global Positioning System -- Data processing , Ionosphere , Ionospheric radio wave propagation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5473 , http://hdl.handle.net/10962/d1005258 , Electrons , Global Positioning System , Global Positioning System -- Data processing , Ionosphere , Ionospheric radio wave propagation
- Description: Ionospheric phase delays of radio signals from Global Positioning System (GPS) satellites have been used to compute ionospheric Total Electron Content (TEC). An extended Chapman profle model is used to estimate the electron density profles and TEC. The Chapman profle that can be used to predict TEC over the mid-latitudes only applies during day time. To model night time TEC variability, a polynomial function is fitted to the night time peak electron density profles derived from the online International Reference Ionosphere (IRI) 2001. The observed and predicted TEC and its variability have been used to study ionospheric in°uence on Radio Astronomy in South Africa region. Di®erential phase delays of the radio signals from Radio Astronomy sources have been simulated using TEC. Using the simulated phase delays, the azimuth and declination o®sets of the radio sources have been estimated. Results indicate that, pointing errors of the order of miliarcseconds (mas) are likely if the ionospheric phase delays are not corrected for. These delays are not uniform and vary over a broad spectrum of timescales. This implies that fast frequency (referencing) switching, closure phases and fringe ¯tting schemes for ionospheric correction in astrometry are not the best option as they do not capture the real state of the ionosphere especially if the switching time is greater than the ionospheric TEC variability. However, advantage can be taken of the GPS satellite data available at intervals of a second from the GPS receiver network in South Africa to derive parameters which could be used to correct for the ionospheric delays. Furthermore GPS data can also be used to monitor the occurrence of scintillations, (which might corrupt radio signals) especially for the proposed, Square Kilometer Array (SKA) stations closer to the equatorial belt during magnetic storms and sub-storms. A 10 minute snapshot of GPS data recorded with the Hermanus [34:420 S, 19:220 E ] dual frequency receiver on 2003-04-11 did not show the occurrence of scintillations. This time scale is however too short and cannot be representative. Longer time scales; hours, days, seasons are needed to monitor the occurrence of scintillations.
- Full Text:
- Date Issued: 2006
- Authors: Botai, Ondego Joel
- Date: 2006
- Subjects: Electrons , Global Positioning System , Global Positioning System -- Data processing , Ionosphere , Ionospheric radio wave propagation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5473 , http://hdl.handle.net/10962/d1005258 , Electrons , Global Positioning System , Global Positioning System -- Data processing , Ionosphere , Ionospheric radio wave propagation
- Description: Ionospheric phase delays of radio signals from Global Positioning System (GPS) satellites have been used to compute ionospheric Total Electron Content (TEC). An extended Chapman profle model is used to estimate the electron density profles and TEC. The Chapman profle that can be used to predict TEC over the mid-latitudes only applies during day time. To model night time TEC variability, a polynomial function is fitted to the night time peak electron density profles derived from the online International Reference Ionosphere (IRI) 2001. The observed and predicted TEC and its variability have been used to study ionospheric in°uence on Radio Astronomy in South Africa region. Di®erential phase delays of the radio signals from Radio Astronomy sources have been simulated using TEC. Using the simulated phase delays, the azimuth and declination o®sets of the radio sources have been estimated. Results indicate that, pointing errors of the order of miliarcseconds (mas) are likely if the ionospheric phase delays are not corrected for. These delays are not uniform and vary over a broad spectrum of timescales. This implies that fast frequency (referencing) switching, closure phases and fringe ¯tting schemes for ionospheric correction in astrometry are not the best option as they do not capture the real state of the ionosphere especially if the switching time is greater than the ionospheric TEC variability. However, advantage can be taken of the GPS satellite data available at intervals of a second from the GPS receiver network in South Africa to derive parameters which could be used to correct for the ionospheric delays. Furthermore GPS data can also be used to monitor the occurrence of scintillations, (which might corrupt radio signals) especially for the proposed, Square Kilometer Array (SKA) stations closer to the equatorial belt during magnetic storms and sub-storms. A 10 minute snapshot of GPS data recorded with the Hermanus [34:420 S, 19:220 E ] dual frequency receiver on 2003-04-11 did not show the occurrence of scintillations. This time scale is however too short and cannot be representative. Longer time scales; hours, days, seasons are needed to monitor the occurrence of scintillations.
- Full Text:
- Date Issued: 2006
Reproductive co-existence among five sympatric single-stemmed aloes in the Gamtoos River Valley, Eastern Cape
- Authors: Botes, Christo
- Date: 2007
- Subjects: Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10628 , http://hdl.handle.net/10948/481 , Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Description: In this study I documented the convergence of five congeneric bird-pollinated plants (Aloe pluridens, A. lineata var. muirii, A. speciosa, A. africana, and A. ferox) into three functional groups based on size, shape, and the arrangements of flowers on the inflorescence, but also nectar rewards, pollen deposition sites on the bird-pollinators, and the degree to which bees play a role in their pollination. Individuals of similar functional groups were divergent in their peak flowering times and limited their degree of flowering overlap further by spatial aggregation and niche separation, within the Thicket of the Gamtoos River Valley. The nectar properties were especially useful in structuring the bird pollinator community, which resulted in greater ethological isolation and hence, greater reproductive assurance in the mixed co-flowering plant communities. Choice array experiments revealed that it was the fine scale aggregation of flowering individuals that ensured that bird-pollinators feed selectively, since when equal choice was available, interspecific visitation increased significantly compared to natural scenarios. Bird behaviour and the ecological intermediateness of one to the species explained its prominence in hybrid combinations. The spatial occurrence of hybrid individuals can be traced back to the energetics of foraging and its influence on bird floral constancy. The pollination ecology of similar South African Aloe species were extrapolated from these and recent findings by various authors, but emphasises the need for a robust natural phylogeny of the Aloaceae in order to draw comprehensive conclusions on the evolutionary radiation of this highly charismatic group.
- Full Text:
- Date Issued: 2007
- Authors: Botes, Christo
- Date: 2007
- Subjects: Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10628 , http://hdl.handle.net/10948/481 , Aloe -- South Africa -- Gamtoos River Valley , Aloe -- South Africa -- Identification
- Description: In this study I documented the convergence of five congeneric bird-pollinated plants (Aloe pluridens, A. lineata var. muirii, A. speciosa, A. africana, and A. ferox) into three functional groups based on size, shape, and the arrangements of flowers on the inflorescence, but also nectar rewards, pollen deposition sites on the bird-pollinators, and the degree to which bees play a role in their pollination. Individuals of similar functional groups were divergent in their peak flowering times and limited their degree of flowering overlap further by spatial aggregation and niche separation, within the Thicket of the Gamtoos River Valley. The nectar properties were especially useful in structuring the bird pollinator community, which resulted in greater ethological isolation and hence, greater reproductive assurance in the mixed co-flowering plant communities. Choice array experiments revealed that it was the fine scale aggregation of flowering individuals that ensured that bird-pollinators feed selectively, since when equal choice was available, interspecific visitation increased significantly compared to natural scenarios. Bird behaviour and the ecological intermediateness of one to the species explained its prominence in hybrid combinations. The spatial occurrence of hybrid individuals can be traced back to the energetics of foraging and its influence on bird floral constancy. The pollination ecology of similar South African Aloe species were extrapolated from these and recent findings by various authors, but emphasises the need for a robust natural phylogeny of the Aloaceae in order to draw comprehensive conclusions on the evolutionary radiation of this highly charismatic group.
- Full Text:
- Date Issued: 2007
Property price prediction: a model utilising sentiment analysis
- Authors: Botes, Rhys Cameron
- Date: 2019
- Subjects: Natural language processing (Computer science) , Computational linguistics Text processing (Computer science) Social networks
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/37117 , vital:34119
- Description: The increase in the use of social media has led many researchers and companies to investigate the potential uses of the data that is generated by these social media platforms. This research study investigates how the use of sentiment variables, obtained from the social media platform Twitter, can be used to augment housing transfer data in order to develop a predictive model. The Design Science Research (DSR) methodology was followed, guided by a Social Media Framework. Experimentation was required within the Design Cycle of the DSR methodology, which lead to the adoption of the Experimental Research methodology within this cycle. An initial literature review identified regression models for property price prediction. Through experimentation, Gradient Boosting regression was identified as an optimal regression model for this purpose. Thereafter a review of sentiment analysis models was conducted which resulted in the proposal of a CNN-LSTM model for the classification of Tweets. Initial experimentation conducted with this proposed model resulted in an obtained accuracy comparable to the top performing sentiment analysis models identified. A dataset obtained through SemEval, a series of evaluations of computational semantic analysis systems, was used for this phase. For the final experimentation, The CNN-LSTM model was used to obtain sentiment variables from Tweets that were collected from the Western Cape Province in 2017. This property dataset was augmented with the sentiment variables, after which experimentation was conducted by applying Gradient Boosting regression. The augmentation was done in two ways, either based on suburb pertaining to the property, or to the month in which the property was transferred. The results indicate that a model for Property Price Prediction Utilising Sentiment Analysis demonstrates a small improvement when suburb-based sentiment, obtained from Tweets with a minimum threshold per suburb, is utilised. An important finding was the fact that, when geo-coordinates are removed from the dataset, the sentiment variables replace them in the regression results, producing the same level as accuracy as when the coordinates are included.
- Full Text:
- Date Issued: 2019
- Authors: Botes, Rhys Cameron
- Date: 2019
- Subjects: Natural language processing (Computer science) , Computational linguistics Text processing (Computer science) Social networks
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/37117 , vital:34119
- Description: The increase in the use of social media has led many researchers and companies to investigate the potential uses of the data that is generated by these social media platforms. This research study investigates how the use of sentiment variables, obtained from the social media platform Twitter, can be used to augment housing transfer data in order to develop a predictive model. The Design Science Research (DSR) methodology was followed, guided by a Social Media Framework. Experimentation was required within the Design Cycle of the DSR methodology, which lead to the adoption of the Experimental Research methodology within this cycle. An initial literature review identified regression models for property price prediction. Through experimentation, Gradient Boosting regression was identified as an optimal regression model for this purpose. Thereafter a review of sentiment analysis models was conducted which resulted in the proposal of a CNN-LSTM model for the classification of Tweets. Initial experimentation conducted with this proposed model resulted in an obtained accuracy comparable to the top performing sentiment analysis models identified. A dataset obtained through SemEval, a series of evaluations of computational semantic analysis systems, was used for this phase. For the final experimentation, The CNN-LSTM model was used to obtain sentiment variables from Tweets that were collected from the Western Cape Province in 2017. This property dataset was augmented with the sentiment variables, after which experimentation was conducted by applying Gradient Boosting regression. The augmentation was done in two ways, either based on suburb pertaining to the property, or to the month in which the property was transferred. The results indicate that a model for Property Price Prediction Utilising Sentiment Analysis demonstrates a small improvement when suburb-based sentiment, obtained from Tweets with a minimum threshold per suburb, is utilised. An important finding was the fact that, when geo-coordinates are removed from the dataset, the sentiment variables replace them in the regression results, producing the same level as accuracy as when the coordinates are included.
- Full Text:
- Date Issued: 2019
A survey of the development of pitch perception theories, their application to bell sounds and an investigation of perceived differences between ringing and chiming bells
- Authors: Botha, Alison
- Date: 1998
- Subjects: Music -- Acoustics and physics , Musical pitch , Change ringing , Chimes , Bells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:2631 , http://hdl.handle.net/10962/d1002296 , Music -- Acoustics and physics , Musical pitch , Change ringing , Chimes , Bells
- Description: A brief overview of the workings of the human auditory system is followed by a review of literature concerning both the theories and experimental investigations of human pitch perception. The application of these theories to the inharmonic complex tones produced by bells is discussed, and further experiments using bell sounds are reviewed. A methodology for psychoacoustic experiments with specific reference to those investigating pitch perception of inharmonic complex tones is presented. This methodology is then implemented in an experimental investigation of pitch perception of ringing and chiming bell sounds. A pitch matching experiment using ringing and chiming sounds from four bells aimed to determine perceived pitch differences between ringing and chiming bells. This experiment was inconclusive because insufficient data was collected. Known experimental results, such as the inability of non-musicians to match the pitches of sounds with different timbres were confirmed. Spectral analyses of the stimuli were performed. The presentation of stimuli at a low level of sensation is questioned, as this might have prevented pseudo high frequency noise resulting from stronger upper partials in the ringing sound from being audible, and hence the pitch differences between ringing and chiming bells would not be observed.
- Full Text:
- Date Issued: 1998
- Authors: Botha, Alison
- Date: 1998
- Subjects: Music -- Acoustics and physics , Musical pitch , Change ringing , Chimes , Bells
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:2631 , http://hdl.handle.net/10962/d1002296 , Music -- Acoustics and physics , Musical pitch , Change ringing , Chimes , Bells
- Description: A brief overview of the workings of the human auditory system is followed by a review of literature concerning both the theories and experimental investigations of human pitch perception. The application of these theories to the inharmonic complex tones produced by bells is discussed, and further experiments using bell sounds are reviewed. A methodology for psychoacoustic experiments with specific reference to those investigating pitch perception of inharmonic complex tones is presented. This methodology is then implemented in an experimental investigation of pitch perception of ringing and chiming bell sounds. A pitch matching experiment using ringing and chiming sounds from four bells aimed to determine perceived pitch differences between ringing and chiming bells. This experiment was inconclusive because insufficient data was collected. Known experimental results, such as the inability of non-musicians to match the pitches of sounds with different timbres were confirmed. Spectral analyses of the stimuli were performed. The presentation of stimuli at a low level of sensation is questioned, as this might have prevented pseudo high frequency noise resulting from stronger upper partials in the ringing sound from being audible, and hence the pitch differences between ringing and chiming bells would not be observed.
- Full Text:
- Date Issued: 1998
Towards modelling the formation of ore bodies initial results dealing with the fluid mechanical aspects of magma chamber convection
- Authors: Botha, André Erasmus
- Date: 1999
- Subjects: Ore deposits , Fluid mechanics , Magmatism
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5492 , http://hdl.handle.net/10962/d1005278 , Ore deposits , Fluid mechanics , Magmatism
- Description: This thesis forms part of a larger effort which aims to establish the means of assessing the fluid mechanical behaviour of magma 1 as it cools inside a magma chamber surrounded by porous country rock. The reason for doing so is to advance the understanding of some types of mineral deposits; for example,the Platinum Group Elements (PGEs). The magma is modelled with the governing equations for a single-phase incompressible Newtonian fluid with variable viscosity and density. In this thesis, thermal conductivity and specific heat are approximated as constants and the country rock is treated as a conducting solid so as to save on computational time in the initial phases of the project. A basic review of the relevant literature is presented as background material and three basic models of magma chambers are discussed: crystal settling, compositional convection and double diffusive convection.The results presented in this thesis are from finite element calculations by a commercial computer code: ANSYS 5.4. This code has been employed in industry for over 26 years and has a long and successful benchmark history. In this context, finite element methods that are applicable to the code are discussed in chapter 5. In chapter 6, results that were obtained in the course of this research are presented. The thesis concludes with an indication of the possible geological significance of the results and various refinements that should be made to future models.
- Full Text:
- Date Issued: 1999
- Authors: Botha, André Erasmus
- Date: 1999
- Subjects: Ore deposits , Fluid mechanics , Magmatism
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5492 , http://hdl.handle.net/10962/d1005278 , Ore deposits , Fluid mechanics , Magmatism
- Description: This thesis forms part of a larger effort which aims to establish the means of assessing the fluid mechanical behaviour of magma 1 as it cools inside a magma chamber surrounded by porous country rock. The reason for doing so is to advance the understanding of some types of mineral deposits; for example,the Platinum Group Elements (PGEs). The magma is modelled with the governing equations for a single-phase incompressible Newtonian fluid with variable viscosity and density. In this thesis, thermal conductivity and specific heat are approximated as constants and the country rock is treated as a conducting solid so as to save on computational time in the initial phases of the project. A basic review of the relevant literature is presented as background material and three basic models of magma chambers are discussed: crystal settling, compositional convection and double diffusive convection.The results presented in this thesis are from finite element calculations by a commercial computer code: ANSYS 5.4. This code has been employed in industry for over 26 years and has a long and successful benchmark history. In this context, finite element methods that are applicable to the code are discussed in chapter 5. In chapter 6, results that were obtained in the course of this research are presented. The thesis concludes with an indication of the possible geological significance of the results and various refinements that should be made to future models.
- Full Text:
- Date Issued: 1999
A critical analysis of the influence of the "Prevention of the illegal eviction from and unlawful occupation of Land Act 19 of 1998" on investment in residential income-producing property
- Authors: Botha, Brink
- Date: 2004
- Subjects: Rental housing -- Law and legislation -- South Africa , Eviction -- Law and legislation -- South Africa , Occupancy (Law) -- South Africa , Real estate investment -- Law and legislation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:11005 , http://hdl.handle.net/10948/321 , Rental housing -- Law and legislation -- South Africa , Eviction -- Law and legislation -- South Africa , Occupancy (Law) -- South Africa , Real estate investment -- Law and legislation -- South Africa
- Description: This research will focus on the influence of legislation (as indicated in this research) on the investment decision in residential income-producing property. Assumptions, as recorded in the hypothesis of this study, indicate that the legislation had a changing influence on the investment decision in residential income-producing property in comparison to the time period prior to the promulgation of the legislation. The research methodology will be based on a comparative analysis of the current legislation and the proposed Draft Amendment Bill. This analysis will be tested by means of a case study analysis incorporating a phenomenological study based on written data. The problems, sub-problems and hypothesis will be addressed and tested in this research in conjunction with the prescribed research methodology. This research is concluded by means of a synopsis and recommendations.
- Full Text:
- Date Issued: 2004
- Authors: Botha, Brink
- Date: 2004
- Subjects: Rental housing -- Law and legislation -- South Africa , Eviction -- Law and legislation -- South Africa , Occupancy (Law) -- South Africa , Real estate investment -- Law and legislation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:11005 , http://hdl.handle.net/10948/321 , Rental housing -- Law and legislation -- South Africa , Eviction -- Law and legislation -- South Africa , Occupancy (Law) -- South Africa , Real estate investment -- Law and legislation -- South Africa
- Description: This research will focus on the influence of legislation (as indicated in this research) on the investment decision in residential income-producing property. Assumptions, as recorded in the hypothesis of this study, indicate that the legislation had a changing influence on the investment decision in residential income-producing property in comparison to the time period prior to the promulgation of the legislation. The research methodology will be based on a comparative analysis of the current legislation and the proposed Draft Amendment Bill. This analysis will be tested by means of a case study analysis incorporating a phenomenological study based on written data. The problems, sub-problems and hypothesis will be addressed and tested in this research in conjunction with the prescribed research methodology. This research is concluded by means of a synopsis and recommendations.
- Full Text:
- Date Issued: 2004
Impacts of cattle grazing pressure on vegetation and soil characteristics in an arid grassland of South Africa
- Authors: Botha, Gert Stephanus
- Date: 2020
- Subjects: Grazing -- Environmental aspects -- South Africa , Cattle -- Feeding and feeds -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/${Handle} , vital:39749
- Description: Natural rangelands are often degraded due to the implementation of incorrect grazing systems. One potential solution is the use of short duration, high intensity grazing. The impacts of this grazing system on, inter alia, vegetation and soil properties have not yet been comprehensively tested within the arid rangelands of South Africa. This study aimed to determine the impacts of grazing intensity on vegetation composition, forage quantity and quality, and soil compaction, soil water infiltration rates and soil chemical properties in an arid grassland in South Africa. The following three grazing treatments were compared: no grazing (NG), low intensity grazing (LIG) and high intensity grazing (HIG). A total of 18 plots (six replicates per treatment) were grazed with Bonsmara cattle. Each plot, 4 ha in size, was surveyed pre-grazing, directly after grazing, and again three, six and 12 months post-grazing. The results indicated that different grazing intensities did not affect grass diversity and the veld condition a year after grazing. Phytomass was influenced by grazing intensity, with no grazing having the highest phytomass throughout the study period. Soil compaction differed among seasons but not among treatments, with summer surveys recording the lowest soil compaction rates. The soil water infiltration rates did not differ between the three different treatments, indicating that grazing intensity did not affect infiltration rates. However, grazing did seem to improve soil nutrient levels when compared to NG. The grazed treatments had higher NH4+, K+, and organic carbon than the NG treatment. Nevertheless, there was no significant difference in nutrients levels when comparing the LIG system to the HIG system. When comparing the soil nutrients levels within a treatment over time, only the HIG treatment showed an increase in soil nutrient levels (Mg2+) over time, whereas the LIG and NG treatments showed no changed throughout the study period. Generally, the study results indicated that in the short term there was no advantage to using higher grazing intensity, although the presence of grazing (as opposed to no grazing) is advantageous to arid grassland functioning.
- Full Text:
- Date Issued: 2020
- Authors: Botha, Gert Stephanus
- Date: 2020
- Subjects: Grazing -- Environmental aspects -- South Africa , Cattle -- Feeding and feeds -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/${Handle} , vital:39749
- Description: Natural rangelands are often degraded due to the implementation of incorrect grazing systems. One potential solution is the use of short duration, high intensity grazing. The impacts of this grazing system on, inter alia, vegetation and soil properties have not yet been comprehensively tested within the arid rangelands of South Africa. This study aimed to determine the impacts of grazing intensity on vegetation composition, forage quantity and quality, and soil compaction, soil water infiltration rates and soil chemical properties in an arid grassland in South Africa. The following three grazing treatments were compared: no grazing (NG), low intensity grazing (LIG) and high intensity grazing (HIG). A total of 18 plots (six replicates per treatment) were grazed with Bonsmara cattle. Each plot, 4 ha in size, was surveyed pre-grazing, directly after grazing, and again three, six and 12 months post-grazing. The results indicated that different grazing intensities did not affect grass diversity and the veld condition a year after grazing. Phytomass was influenced by grazing intensity, with no grazing having the highest phytomass throughout the study period. Soil compaction differed among seasons but not among treatments, with summer surveys recording the lowest soil compaction rates. The soil water infiltration rates did not differ between the three different treatments, indicating that grazing intensity did not affect infiltration rates. However, grazing did seem to improve soil nutrient levels when compared to NG. The grazed treatments had higher NH4+, K+, and organic carbon than the NG treatment. Nevertheless, there was no significant difference in nutrients levels when comparing the LIG system to the HIG system. When comparing the soil nutrients levels within a treatment over time, only the HIG treatment showed an increase in soil nutrient levels (Mg2+) over time, whereas the LIG and NG treatments showed no changed throughout the study period. Generally, the study results indicated that in the short term there was no advantage to using higher grazing intensity, although the presence of grazing (as opposed to no grazing) is advantageous to arid grassland functioning.
- Full Text:
- Date Issued: 2020
Resource partitioning in the world’s largest gannetry
- Authors: Botha, Jonathan Aubrey
- Date: 2017
- Subjects: Gannets -- South Africa Birds of prey -- Behavior -- South Africa , Birds -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/14707 , vital:27828
- Description: Understanding strategies of resource partitioning within populations is a fundamental aspect of the study of ecology, and one which has been well documented across various taxa. In seabirds, sex-specific differences in foraging behaviour are often thought to reflect strategies of resource partitioning to avoid intra-specific competition. At present Bird Island in Algoa Bay hosts the world’s largest breeding population of gannets, with recent population estimates numbering well over 90 000 breeding pairs. Given the large size of this colony, intense levels of intra-specific competition are expected during the breeding season, particularly in years of poor feeding conditions. In addition, continuous foraging around the breeding colony may lead to the local depletion of prey as the season progresses, calling for flexibility in the foraging behaviour and diet of breeding individuals. Therefore, the aim of this dissertation was to investigate resource partitioning in Cape gannets breeding at Bird Island through strategies of sex-specific foraging and intra-seasonal variability in foraging behaviour and diet. To achieve this, the spatial and temporal aspects of Cape gannet foraging behaviour were assessed during the early stages of chick rearing, over two consecutive breeding seasons (2011/12, 2012/13) using GPS tracking and VHF monitoring. In addition, intra-seasonal variability in foraging behaviour and diet were investigated, taking into account the influence of sex and chick age, to provide a comprehensive assessment of foraging behaviour throughout the chick rearing period. GPS tracking data for 79 birds revealed limited evidence for sex-specific differences over spatial dimensions. An extension in the foraging range of females during a year of lower prey availability (2012/13) was, however, evident. This suggests a possible sex-specific response to prey limitation, likely reflecting resource partitioning strategies or differences in nutritional requirements. VHF data for 95 additional birds revealed a clear pattern in temporal foraging behaviour. In general, females were more likely to be on a foraging trip during the early and mid-day hours, with the probability of males being on a foraging trip increasing towards the late afternoon. Continuous tracking of individuals throughout the 2015/16 breeding season further revealed little evidence for sex-specific differences in spatial distribution and forging effort during both the guard and post-guard stages of chick rearing. A clear increase in foraging range was evident during the early stages of chick rearing as the season progressed. However, birds attending chicks older than 50 days showed an unexpected contraction in foraging range, which appeared to coincide with a dietary shift. During the early stages of breeding the diet was comprised almost exclusively of anchovy, the proportion of which decreased progressively in the diet throughout the breeding season. This was mirrored by a substantial increase in the proportion of saury in the diet. These results suggest that Cape gannets increase their foraging range in response to local prey depletion as the breeding season progresses. However, when alternative prey becomes available they may shift their diet, allowing them to access prey closer to the breeding colony. Overall, this dissertation provides insight into sex-specific behaviour in a monomorphic seabird, suggesting a marginal degree of spatial segregation. The results provide the first support for sex-related temporal foraging segregation in gannets. Such separation could potentially be driven by resource partitioning, but could also relate to differential nutritional requirements. In addition, this study also provided the first comprehensive assessment of foraging behaviour throughout the guard and post guard stages of chick rearing in gannets. These results suggest that a combination of foraging and dietary flexibility may allow Cape gannets to buffer the effects of prey depletion during the breeding season. In conclusion, resource partitioning through sex-specific foraging appears to be limited in the Cape gannet population at Bird Island. Segregation via alternative pathways may however be possible and as such, future studies should consider the influence of individual level segregation and habitat specialization.
- Full Text:
- Date Issued: 2017
- Authors: Botha, Jonathan Aubrey
- Date: 2017
- Subjects: Gannets -- South Africa Birds of prey -- Behavior -- South Africa , Birds -- Behavior
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/14707 , vital:27828
- Description: Understanding strategies of resource partitioning within populations is a fundamental aspect of the study of ecology, and one which has been well documented across various taxa. In seabirds, sex-specific differences in foraging behaviour are often thought to reflect strategies of resource partitioning to avoid intra-specific competition. At present Bird Island in Algoa Bay hosts the world’s largest breeding population of gannets, with recent population estimates numbering well over 90 000 breeding pairs. Given the large size of this colony, intense levels of intra-specific competition are expected during the breeding season, particularly in years of poor feeding conditions. In addition, continuous foraging around the breeding colony may lead to the local depletion of prey as the season progresses, calling for flexibility in the foraging behaviour and diet of breeding individuals. Therefore, the aim of this dissertation was to investigate resource partitioning in Cape gannets breeding at Bird Island through strategies of sex-specific foraging and intra-seasonal variability in foraging behaviour and diet. To achieve this, the spatial and temporal aspects of Cape gannet foraging behaviour were assessed during the early stages of chick rearing, over two consecutive breeding seasons (2011/12, 2012/13) using GPS tracking and VHF monitoring. In addition, intra-seasonal variability in foraging behaviour and diet were investigated, taking into account the influence of sex and chick age, to provide a comprehensive assessment of foraging behaviour throughout the chick rearing period. GPS tracking data for 79 birds revealed limited evidence for sex-specific differences over spatial dimensions. An extension in the foraging range of females during a year of lower prey availability (2012/13) was, however, evident. This suggests a possible sex-specific response to prey limitation, likely reflecting resource partitioning strategies or differences in nutritional requirements. VHF data for 95 additional birds revealed a clear pattern in temporal foraging behaviour. In general, females were more likely to be on a foraging trip during the early and mid-day hours, with the probability of males being on a foraging trip increasing towards the late afternoon. Continuous tracking of individuals throughout the 2015/16 breeding season further revealed little evidence for sex-specific differences in spatial distribution and forging effort during both the guard and post-guard stages of chick rearing. A clear increase in foraging range was evident during the early stages of chick rearing as the season progressed. However, birds attending chicks older than 50 days showed an unexpected contraction in foraging range, which appeared to coincide with a dietary shift. During the early stages of breeding the diet was comprised almost exclusively of anchovy, the proportion of which decreased progressively in the diet throughout the breeding season. This was mirrored by a substantial increase in the proportion of saury in the diet. These results suggest that Cape gannets increase their foraging range in response to local prey depletion as the breeding season progresses. However, when alternative prey becomes available they may shift their diet, allowing them to access prey closer to the breeding colony. Overall, this dissertation provides insight into sex-specific behaviour in a monomorphic seabird, suggesting a marginal degree of spatial segregation. The results provide the first support for sex-related temporal foraging segregation in gannets. Such separation could potentially be driven by resource partitioning, but could also relate to differential nutritional requirements. In addition, this study also provided the first comprehensive assessment of foraging behaviour throughout the guard and post guard stages of chick rearing in gannets. These results suggest that a combination of foraging and dietary flexibility may allow Cape gannets to buffer the effects of prey depletion during the breeding season. In conclusion, resource partitioning through sex-specific foraging appears to be limited in the Cape gannet population at Bird Island. Segregation via alternative pathways may however be possible and as such, future studies should consider the influence of individual level segregation and habitat specialization.
- Full Text:
- Date Issued: 2017
Towards the development of InAs/GaInSb strained-layer superlattices for infrared detection
- Authors: Botha, Lindsay
- Date: 2008
- Subjects: Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10526 , http://hdl.handle.net/10948/713 , Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Description: This study focuses on the development of InAs/GaInSb strained-layer superlattice structures by metal organic chemical vapour deposition (MOCVD), and deals with two aspects of the development of InAs/GaInSb SLS’s by MOCVD viz. the deposition of nano-scale (~100 Å) GaInSb layers, and the electrical characterization of unstrained InAs. The first part of this work aims to study the MOCVD growth of GaInSb layers in terms of deposition rate and indium incorporation on the nano-scale. This task is approached by first optimizing the growth of relatively thick (~2 μm) epitaxial films, and then assuming similar growth parameters during nano-scale deposition. The GaInSb layers were grown as part of GaInSb/GaSb quantum well (QW) structures. By using this approach, the GaInSb QW’s (~100 Å) could be characterized with the use of photoluminescence spectroscopy, which, when used in conjunction with transmission electron microscopy and/or X-ray diffractomery, proves useful in the analysis of such small scale deposition. It is shown that the growth rate of GaInSb on the nano-scale approaches the nominal growth rates determined from thick (~2 μm) GaInSb calibration layers. The In incorporation efficiency in nano-layers, however, was markedly lower than what was predicted by the GaInSb calibration layers. This reduction in indium incorporation could be the result of the effects of strain on In incorporation. The choice of substrate orientation for QW deposition was also studied. QW structures were grown simultaneously on both (100) and 2°off (100) GaSb(Te) substrates, and it is shown that growth on non-vicinal substrates is more conducive to the deposition of high quality QW structures. The second part of this study focuses on the electrical characterization of unstrained InAs. It is long known that conventional Hall measurements cannot be used to accurately characterize InAs epitaxial layers, as a result of parallel conduction resulting from surface and/or interface effects. This study looks at extracting the surface and bulk electrical properties of n-type InAs thin films directly from variable magnetic field Hall measurements. For p-type InAs, the situation is complicated by the relatively large electron to hole mobility ratio of InAs which tends to conceal the p-type nature of InAs thin films from Hall measurements. Here, this effect is illustrated by way of theoretical simulation of Hall data.
- Full Text:
- Date Issued: 2008
- Authors: Botha, Lindsay
- Date: 2008
- Subjects: Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10526 , http://hdl.handle.net/10948/713 , Gallium arsenide semiconductors , Indium alloys , Compound semiconductors , Organometallic compounds , Infrared detectors , Infrared technology , Superlattices as materials
- Description: This study focuses on the development of InAs/GaInSb strained-layer superlattice structures by metal organic chemical vapour deposition (MOCVD), and deals with two aspects of the development of InAs/GaInSb SLS’s by MOCVD viz. the deposition of nano-scale (~100 Å) GaInSb layers, and the electrical characterization of unstrained InAs. The first part of this work aims to study the MOCVD growth of GaInSb layers in terms of deposition rate and indium incorporation on the nano-scale. This task is approached by first optimizing the growth of relatively thick (~2 μm) epitaxial films, and then assuming similar growth parameters during nano-scale deposition. The GaInSb layers were grown as part of GaInSb/GaSb quantum well (QW) structures. By using this approach, the GaInSb QW’s (~100 Å) could be characterized with the use of photoluminescence spectroscopy, which, when used in conjunction with transmission electron microscopy and/or X-ray diffractomery, proves useful in the analysis of such small scale deposition. It is shown that the growth rate of GaInSb on the nano-scale approaches the nominal growth rates determined from thick (~2 μm) GaInSb calibration layers. The In incorporation efficiency in nano-layers, however, was markedly lower than what was predicted by the GaInSb calibration layers. This reduction in indium incorporation could be the result of the effects of strain on In incorporation. The choice of substrate orientation for QW deposition was also studied. QW structures were grown simultaneously on both (100) and 2°off (100) GaSb(Te) substrates, and it is shown that growth on non-vicinal substrates is more conducive to the deposition of high quality QW structures. The second part of this study focuses on the electrical characterization of unstrained InAs. It is long known that conventional Hall measurements cannot be used to accurately characterize InAs epitaxial layers, as a result of parallel conduction resulting from surface and/or interface effects. This study looks at extracting the surface and bulk electrical properties of n-type InAs thin films directly from variable magnetic field Hall measurements. For p-type InAs, the situation is complicated by the relatively large electron to hole mobility ratio of InAs which tends to conceal the p-type nature of InAs thin films from Hall measurements. Here, this effect is illustrated by way of theoretical simulation of Hall data.
- Full Text:
- Date Issued: 2008
Nest site fidelity and nest site selection of loggerhead, Caretta Caretta, and leatherback, dermochelys coriacea, turtles in KwaZulu-Natal, South Africa
- Authors: Botha, Marié
- Date: 2010
- Subjects: Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10696 , http://hdl.handle.net/10948/1233 , Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Description: Loggerhead and leatherback sea turtles nest on the beaches of the north-eastern portion of Kwazulu-Natal within the iSimangaliso Wetland Park. Loggerheads place ~60 percent of all nests within an 8 km stretch of beach, whereas leatherbacks tend to space their nests more evenly along the entire length of the monitoring area. The study aimed to determine nest site fidelity of loggerheads and leatherbacks (using four decades of nesting data housed by Ezemvelo KZN Wildlife) and the factors that influence nest site selection of both species within the 56 km of turtle monitoring area (32N to 100S) and the 5 km area of high-density loggerhead nesting (0N to 12N). The effectiveness of nest site selection was then determined through the hatching success of loggerheads over the 5km area (0N to 12N). Results showed that loggerheads show a high degree of nest site fidelity (~3 km) with nest site fidelity of individuals increasing over subsequent seasons of nesting, as well as these individuals using the same stretches of beach for nesting (the most popular area being 1N to 4N for repeat nesters). Leatherbacks displayed nest site fidelity of ~9 km and this did not increase over successive seasons of nesting. In terms of nest site selection, loggerheads and leatherbacks both avoided areas where low shore rock was present, whereas both species preferred nesting on beaches of intermediate morphodynamic state. Leatherback nesting was significantly higher in areas with wider surf zones. Both species were able to surpass the high water mark when nesting as nests below this point would be almost certainly doomed. Hatching success of loggerheads was comparative to high (83 %) relative to other studies, however, nest success varied across the beach from beacon 1N to 12N. Areas where highest nest success was observed were not areas of highest nest density presumably due to artificial lighting. Results from this study increase our understanding of the evolutionary biology of loggerhead and leatherback turtles in South Africa and the effectiveness of loggerhead nest site selection through hatching success.
- Full Text:
- Date Issued: 2010
- Authors: Botha, Marié
- Date: 2010
- Subjects: Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10696 , http://hdl.handle.net/10948/1233 , Sea turtles -- South Africa -- KwaZulu-Natal , Loggerhead turtle -- South Africa -- KwaZulu-Natal , Leatherback turtle -- South Africa -- KwaZulu-Natal , Nest building , Turtles -- Habitat
- Description: Loggerhead and leatherback sea turtles nest on the beaches of the north-eastern portion of Kwazulu-Natal within the iSimangaliso Wetland Park. Loggerheads place ~60 percent of all nests within an 8 km stretch of beach, whereas leatherbacks tend to space their nests more evenly along the entire length of the monitoring area. The study aimed to determine nest site fidelity of loggerheads and leatherbacks (using four decades of nesting data housed by Ezemvelo KZN Wildlife) and the factors that influence nest site selection of both species within the 56 km of turtle monitoring area (32N to 100S) and the 5 km area of high-density loggerhead nesting (0N to 12N). The effectiveness of nest site selection was then determined through the hatching success of loggerheads over the 5km area (0N to 12N). Results showed that loggerheads show a high degree of nest site fidelity (~3 km) with nest site fidelity of individuals increasing over subsequent seasons of nesting, as well as these individuals using the same stretches of beach for nesting (the most popular area being 1N to 4N for repeat nesters). Leatherbacks displayed nest site fidelity of ~9 km and this did not increase over successive seasons of nesting. In terms of nest site selection, loggerheads and leatherbacks both avoided areas where low shore rock was present, whereas both species preferred nesting on beaches of intermediate morphodynamic state. Leatherback nesting was significantly higher in areas with wider surf zones. Both species were able to surpass the high water mark when nesting as nests below this point would be almost certainly doomed. Hatching success of loggerheads was comparative to high (83 %) relative to other studies, however, nest success varied across the beach from beacon 1N to 12N. Areas where highest nest success was observed were not areas of highest nest density presumably due to artificial lighting. Results from this study increase our understanding of the evolutionary biology of loggerhead and leatherback turtles in South Africa and the effectiveness of loggerhead nest site selection through hatching success.
- Full Text:
- Date Issued: 2010
Petrology and geochemistry of the lower group chromitites and host rocks on the farm Zandspruit 168 JP, Western Bushveld Complex
- Authors: Botha, Michael James
- Date: 1988
- Subjects: Petrology -- Africa, Southern , Geochemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4905 , http://hdl.handle.net/10962/d1001565
- Description: The eight Lower Group chromitite layers of the Ruighoek Pyroxenite in the area west of the Pilanesberg (LGl - LG7), on the farm Zandspruit 168 JP, were sampled in borehole cores drilled through the succession. The stratigraphic succession faIls within Cameron's (980) units B to E of the Critical Zone. The lowermost layer of the Lower Group, the LG 1 chromitite, is located some 440 metres below the MG 2 (Middle Group) chromitite layer, above which the first appearance of cumulus plagioclase in the Complex is seen. By convention, this horizon is designated the top of the Ruighoek Pyroxenite in the Western Bushveld Complex. Homogeneous units of chromite-bearing orthopyroxenite (bronzitite), exhibiting inconspicuous layering defined in terms of variations in orthopyroxene grain-size host all but one of the Lower Group layers; the LG 4 chromitite layer is exposed within an olivine-rich subunit 23 metres in thickness (C₃ subunit). The cumulative thickness of chromitite is 2,92 metres or 0,8 per cent of the studied section, which is 381 metres in thickness. Minimum and maximum thicknesses of the LGl - LG7 layers exposed in drill core are 17 and 81 centimetres, respectively, with minor chromitite layers ranging between 2 and 5 centimetres in thickness. Weighted mean Cr₂0₃ contents of units B to E vary between 1,17 and 3,22 per cent, with the latter estimate representative of the D₂ subunit which hosts the LG 6 chromitite layer. The LG 6 is correlated with the Steelpoort layer of the Eastern Bushveld Complex, and varies between 76 and 81 centimetres in thickness under a large portion of the farm Zandspruit. An undisturbed succession striking N15°E and dipping 12 - 15°E is depicted within the studied area, which is bounded on the eastern side by the north-striking Frank fault. Major folding of the layered succession is evident to the north of the area, where the layering adjacent to the trace of the fault dips 35° to the southwest. Particular attention is paid in the present study to (a) the nature of chromitite layers and their host rocks, (b) the contrast between the mineral chemistry of weakly disseminated chromite and grains within massive ore layers, (c) concentrations of Cr, V, Ni, Co, Sc and Ti in orthopyroxene in relation to stratigraphic height, and levels of Sr, Ba and Zr associated with hypothetically pure, intercumulus plagioclase feldspar, and (d) possible mechanisms which induce crystallization of chromitite layers containing 50 per cent Cr₂0₃ from magma with a Cr content of less than 1 000 ppm. Electron microprobe studies of chromite in relation to mineralogical and textural environment clearly reveal that (a) the proportions of Cr and Al cations are linked to paragenesis: higher Al/Cr ratios characterize olivine-bearing domains, whereas grains intergrown with plagioclase feldspar exhibit low AI/Cr ratios, and (b) Al contents rise with a decline in Mg/(Mg + Fe²⁺) from high values to a value of 0,450, then decrease with a further decline in Mg/(Mg + Fe²⁺). The paragenetically later trend is emphasized in a large population of chromite grains which escaped early encapsulation in orthopyroxene crystals and continued to grow in the environment of intercumulus plagioclase. Within-and between-sample compositional variation of grains in silicate-rich domains is modelled in terms of in situ growth increments, diffusive homogenization of zonal structures, and residence time within interstitial melt. Fractionation trends, as measured by Mg/(Mg + Fe²⁺) ratios in whole-rock and/or microprobe studies of orthopyroxene, are reversed in relation to stratigraphic height towards the top of the B unit and in the overlying C unit. These data are supported, for example, by lower vanadium contents and higher Ni/Sc ratios in hypothetically pure orthopyroxene. Small olivine crystals in chromite-rich domains are enriched in Ni relative to coarse-grained olivine in adjacent dunite: a feature attributed to early isolation of primocrysts from magma in the former case, and in situ equilibration between olivine crystals and Ni-depleted residual melt in the latter case . Similarly, rising Ni contents and Mg/(Mg + Fe²⁺) ratios of orthopyroxene with increasing stratigraphic height in the footwall of the LG 6 chromitite layer, linked to a progressive decline in orthopyroxene grain-size, are effects which may arise out of early separation of interstitial melt from orthopyroxene cumulates. A model is thus proposed which (a) links the thickness of chromitite layers to the vertical separation between successive layers or the thickness of fine-grained orthopyroxenite in the footwall, (b) ascribes copious nucleation of chromite to liquid mixing of this footwall derived, Cr - depleted contaminant with influxes of hot, primitive magma, and (c) tenders the notion that the present modal proportion of mesostasis in the footwall of a chromitite layer serves as a reciprocal measure of the volume of fractionated exudate
- Full Text:
- Date Issued: 1988
- Authors: Botha, Michael James
- Date: 1988
- Subjects: Petrology -- Africa, Southern , Geochemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4905 , http://hdl.handle.net/10962/d1001565
- Description: The eight Lower Group chromitite layers of the Ruighoek Pyroxenite in the area west of the Pilanesberg (LGl - LG7), on the farm Zandspruit 168 JP, were sampled in borehole cores drilled through the succession. The stratigraphic succession faIls within Cameron's (980) units B to E of the Critical Zone. The lowermost layer of the Lower Group, the LG 1 chromitite, is located some 440 metres below the MG 2 (Middle Group) chromitite layer, above which the first appearance of cumulus plagioclase in the Complex is seen. By convention, this horizon is designated the top of the Ruighoek Pyroxenite in the Western Bushveld Complex. Homogeneous units of chromite-bearing orthopyroxenite (bronzitite), exhibiting inconspicuous layering defined in terms of variations in orthopyroxene grain-size host all but one of the Lower Group layers; the LG 4 chromitite layer is exposed within an olivine-rich subunit 23 metres in thickness (C₃ subunit). The cumulative thickness of chromitite is 2,92 metres or 0,8 per cent of the studied section, which is 381 metres in thickness. Minimum and maximum thicknesses of the LGl - LG7 layers exposed in drill core are 17 and 81 centimetres, respectively, with minor chromitite layers ranging between 2 and 5 centimetres in thickness. Weighted mean Cr₂0₃ contents of units B to E vary between 1,17 and 3,22 per cent, with the latter estimate representative of the D₂ subunit which hosts the LG 6 chromitite layer. The LG 6 is correlated with the Steelpoort layer of the Eastern Bushveld Complex, and varies between 76 and 81 centimetres in thickness under a large portion of the farm Zandspruit. An undisturbed succession striking N15°E and dipping 12 - 15°E is depicted within the studied area, which is bounded on the eastern side by the north-striking Frank fault. Major folding of the layered succession is evident to the north of the area, where the layering adjacent to the trace of the fault dips 35° to the southwest. Particular attention is paid in the present study to (a) the nature of chromitite layers and their host rocks, (b) the contrast between the mineral chemistry of weakly disseminated chromite and grains within massive ore layers, (c) concentrations of Cr, V, Ni, Co, Sc and Ti in orthopyroxene in relation to stratigraphic height, and levels of Sr, Ba and Zr associated with hypothetically pure, intercumulus plagioclase feldspar, and (d) possible mechanisms which induce crystallization of chromitite layers containing 50 per cent Cr₂0₃ from magma with a Cr content of less than 1 000 ppm. Electron microprobe studies of chromite in relation to mineralogical and textural environment clearly reveal that (a) the proportions of Cr and Al cations are linked to paragenesis: higher Al/Cr ratios characterize olivine-bearing domains, whereas grains intergrown with plagioclase feldspar exhibit low AI/Cr ratios, and (b) Al contents rise with a decline in Mg/(Mg + Fe²⁺) from high values to a value of 0,450, then decrease with a further decline in Mg/(Mg + Fe²⁺). The paragenetically later trend is emphasized in a large population of chromite grains which escaped early encapsulation in orthopyroxene crystals and continued to grow in the environment of intercumulus plagioclase. Within-and between-sample compositional variation of grains in silicate-rich domains is modelled in terms of in situ growth increments, diffusive homogenization of zonal structures, and residence time within interstitial melt. Fractionation trends, as measured by Mg/(Mg + Fe²⁺) ratios in whole-rock and/or microprobe studies of orthopyroxene, are reversed in relation to stratigraphic height towards the top of the B unit and in the overlying C unit. These data are supported, for example, by lower vanadium contents and higher Ni/Sc ratios in hypothetically pure orthopyroxene. Small olivine crystals in chromite-rich domains are enriched in Ni relative to coarse-grained olivine in adjacent dunite: a feature attributed to early isolation of primocrysts from magma in the former case, and in situ equilibration between olivine crystals and Ni-depleted residual melt in the latter case . Similarly, rising Ni contents and Mg/(Mg + Fe²⁺) ratios of orthopyroxene with increasing stratigraphic height in the footwall of the LG 6 chromitite layer, linked to a progressive decline in orthopyroxene grain-size, are effects which may arise out of early separation of interstitial melt from orthopyroxene cumulates. A model is thus proposed which (a) links the thickness of chromitite layers to the vertical separation between successive layers or the thickness of fine-grained orthopyroxenite in the footwall, (b) ascribes copious nucleation of chromite to liquid mixing of this footwall derived, Cr - depleted contaminant with influxes of hot, primitive magma, and (c) tenders the notion that the present modal proportion of mesostasis in the footwall of a chromitite layer serves as a reciprocal measure of the volume of fractionated exudate
- Full Text:
- Date Issued: 1988
An investigation into the induction of oxidative stress and apoptosis by microcystin-LR in the CaCo2 cell line and intestinal tract of Balb/c mice
- Authors: Botha, Nicolette
- Date: 2003
- Subjects: Microcystis aeruginosa -- Toxicology , Apoptosis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:11066 , http://hdl.handle.net/10948/349 , Microcystis aeruginosa -- Toxicology , Apoptosis
- Description: This study reports the findings on the effect of Microcystin-LR (MCLR) on the gastrointestinal tract cells of mice and on two different cell lines, Caco2 and MCF-7. The cyanobacterium Microcystis aeruginosa produces the potent toxin, MCLR. This toxin has been implicated in a number of cases of ill-health. It was decided to investigate whether microcystin-LR induced apoptosis in the gastrointestinal tract of mice and also which possible mechanisms were involved in the induction in vitro. Balb/c mice were given a 75% LD50 intraperitoneal dose of pure microcystin -LR and sacrificed at 8, 16, 24 and 32 hours post-exposure. The small intestinal sections were stained with haematoxylin and eosin and examined for apoptotic cells. There was a time-dependent increase in the number of apoptotic cells with most in the duodenum and the jejunum. No change in glycogen content was evident at 24 hours post exposure when PAS-stained sections were examined. To determine that microcystin was the agent responsible for the changes, fluoroscein isothiocyanate (FITC) immunostaining for the toxin was done on the sections. Apoptosis in vitro was investigated in Caco2, a cell line that behaves like normal enterocytes when the cells are differentiated at confluency, and MCF-7, a breast cancer cell line deficient in pro-caspase-3, cells by 3-[dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT) and lactate dehydrogenase (LDH) assays and by staining with DAPI and Rhodamine 123. MCLR exposure induced apoptosis, as seen in decreased cell viability and increased leakage of LDH, as well as mitochondrial damage shown by Rhodamine staining. The MCF-7 cells, deficient in pro-caspase-3, and Caco2 cells did not show cleavage of poly(ADP)ribose polymerase (PARP) after exposure to 50μM MCLR after 72 hours exposure. Both micro- and milli-calpain activity was however significantly increased in both cell lines exposed to the toxin. There was a significant increase in H2O2, one of the key reactive oxygen species, production during the first 30 minutes that the cells were exposed to 50 mM MCLR.
- Full Text:
- Date Issued: 2003
- Authors: Botha, Nicolette
- Date: 2003
- Subjects: Microcystis aeruginosa -- Toxicology , Apoptosis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:11066 , http://hdl.handle.net/10948/349 , Microcystis aeruginosa -- Toxicology , Apoptosis
- Description: This study reports the findings on the effect of Microcystin-LR (MCLR) on the gastrointestinal tract cells of mice and on two different cell lines, Caco2 and MCF-7. The cyanobacterium Microcystis aeruginosa produces the potent toxin, MCLR. This toxin has been implicated in a number of cases of ill-health. It was decided to investigate whether microcystin-LR induced apoptosis in the gastrointestinal tract of mice and also which possible mechanisms were involved in the induction in vitro. Balb/c mice were given a 75% LD50 intraperitoneal dose of pure microcystin -LR and sacrificed at 8, 16, 24 and 32 hours post-exposure. The small intestinal sections were stained with haematoxylin and eosin and examined for apoptotic cells. There was a time-dependent increase in the number of apoptotic cells with most in the duodenum and the jejunum. No change in glycogen content was evident at 24 hours post exposure when PAS-stained sections were examined. To determine that microcystin was the agent responsible for the changes, fluoroscein isothiocyanate (FITC) immunostaining for the toxin was done on the sections. Apoptosis in vitro was investigated in Caco2, a cell line that behaves like normal enterocytes when the cells are differentiated at confluency, and MCF-7, a breast cancer cell line deficient in pro-caspase-3, cells by 3-[dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT) and lactate dehydrogenase (LDH) assays and by staining with DAPI and Rhodamine 123. MCLR exposure induced apoptosis, as seen in decreased cell viability and increased leakage of LDH, as well as mitochondrial damage shown by Rhodamine staining. The MCF-7 cells, deficient in pro-caspase-3, and Caco2 cells did not show cleavage of poly(ADP)ribose polymerase (PARP) after exposure to 50μM MCLR after 72 hours exposure. Both micro- and milli-calpain activity was however significantly increased in both cell lines exposed to the toxin. There was a significant increase in H2O2, one of the key reactive oxygen species, production during the first 30 minutes that the cells were exposed to 50 mM MCLR.
- Full Text:
- Date Issued: 2003