Assessing the Social Sustainability of Wind Energy in the Karoo
- Authors: Hechter, J P
- Date: 2020
- Subjects: Wind power -- South Africa -- Karoo
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48378 , vital:40854
- Description: Background: In an ecologically conscious world, the need for sustainable development and the need to produce alternative energy is at the forefront of discussions. South Africa has been witnessing to a surge in wind energy developments in recent years. Although, environmental impacts often enjoy more emphasis, social impacts are equally important. Recently social sustainability was seen as an integral part of sustainable development for the future and can no longer be ignored. Wind energy is pathway towards sustainable development but can have detrimental impacts on social sustainability. On the one hand wind energy is said to impact culture, sense of places and cause unrest in a community, however, on the other hand it is said to be socially sustainable to the point where wind energy is incorporated into local culture and not to mention the employment opportunities it can create. This is particularly important for vulnerable communities found in the Karoo, where unemployment is very high. Purpose/ Aim: The aim of this study was to assess the social sustainability of a wind energy project in the Karoo by constructing a theoretical assessment model designed to produce appropriate and specific social indicators. Methodology: A literature review was undertaken to gain insights into the social sustainability of wind energy which also served as the theoretical backbone for the model and assessment parameters. The assessment model produced 10 indicators which was used as interview schedule with key stakeholders in the study area. A total of 31 qualitative interviews were conducted and produced a good data set. Findings: The results from this study show that here was no significant negative impact reported with regards to social sustainability. The wind developer is committed to the community based on the various social initiative funded by it. Although a definite positive impact and improvement in terms of social sustainability is evident in the area, there is still a long way to go as many outcomes set by the wind developer is yet to achieved.
- Full Text:
- Date Issued: 2020
- Authors: Hechter, J P
- Date: 2020
- Subjects: Wind power -- South Africa -- Karoo
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48378 , vital:40854
- Description: Background: In an ecologically conscious world, the need for sustainable development and the need to produce alternative energy is at the forefront of discussions. South Africa has been witnessing to a surge in wind energy developments in recent years. Although, environmental impacts often enjoy more emphasis, social impacts are equally important. Recently social sustainability was seen as an integral part of sustainable development for the future and can no longer be ignored. Wind energy is pathway towards sustainable development but can have detrimental impacts on social sustainability. On the one hand wind energy is said to impact culture, sense of places and cause unrest in a community, however, on the other hand it is said to be socially sustainable to the point where wind energy is incorporated into local culture and not to mention the employment opportunities it can create. This is particularly important for vulnerable communities found in the Karoo, where unemployment is very high. Purpose/ Aim: The aim of this study was to assess the social sustainability of a wind energy project in the Karoo by constructing a theoretical assessment model designed to produce appropriate and specific social indicators. Methodology: A literature review was undertaken to gain insights into the social sustainability of wind energy which also served as the theoretical backbone for the model and assessment parameters. The assessment model produced 10 indicators which was used as interview schedule with key stakeholders in the study area. A total of 31 qualitative interviews were conducted and produced a good data set. Findings: The results from this study show that here was no significant negative impact reported with regards to social sustainability. The wind developer is committed to the community based on the various social initiative funded by it. Although a definite positive impact and improvement in terms of social sustainability is evident in the area, there is still a long way to go as many outcomes set by the wind developer is yet to achieved.
- Full Text:
- Date Issued: 2020
Associations between family history of diseases of lifestyle, lifestyle behaviour and anthropometric nutritional status of pre-school children in ECD centres in the Nelson Mandela Bay Municipality
- Authors: Wilson, Teresa Margaret
- Date: 2020
- Subjects: Nutrition--Evaluation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/46344 , vital:39602
- Description: Introduction: Childhood overweight and obesity is an escalating global health issue. In Africa, overweight and obesity prevalence in children has nearly doubled since 2000(World Health Organisation, 2018).TheSANHANES-1 study (2013) identified that overweight and obesity in were most prevalent in urban informal areas of South Africa, with approximately a quarter of the children classified as overweight or obese (Shisana et al., 2013).In the Nelson Mandela Bay Municipality(NMBM), a double burden of disease was identified in the lower socio-economic population (Phekana et al., 2016). This study and others recommended further study into the contributing factors and behaviours which play a role in the development of overweight and obesity in children. These include household dietary intake, family history of lifestyle diseases, as well as the children’s and parental physical activity and sedentary time (Zhang et al.,2016).Aim: The aim of the study was to determine the associations between family history of diseases of lifestyle, lifestyle behaviour and anthropometric nutritional status of pre-school children in NMBM to describe underlying causes of childhood overweight and obesity.Methods: A cross-sectional design, using a quantitative approach, was used for this study(Ethics approval: H18-HEA-DIET-004). The study population included adult parents and/or caregivers of children from urban areas of Nelson Mandela Bay Municipality attending crèches and schools in these areas, in the age group from birth to 96 months (8 years). Randomised cluster sampling of crèches and schools from an existing database of anthropometrical data of children attending these crèches and schools in the area was done and a final sample of n=155obtained. With the assistance of a trained fieldworker, respondents completed a questionnaire detailing the family history of lifestyle diseases, physical activity levels and sedentary screen time behaviours, and a graphical adjusted version of a household dietary diversity questionnaire. Data about children’s activity levels in the preschool/creche environment was collected by the fieldworker by assessing the ECD centres’daily activity schedules. The anthropometric data of the children of the respondents was accessed from an existing database of these measurements. The data was described using means and standard deviations. Inferential statistics determined any existing associations between these underlying influences of childhood obesity.Results: Only 2% (n=3) of the children were underweight and 12% (n=9) were at risk of becoming underweight as classified by WAZ. HAZ scores identified26% (n=40) of the children at risk of becoming stunted, and 6% (n=9) of the children were already stunted. WHZ classified5% (n=8)of the children as overweight and 5% (n=8)as obese. A further 22% (n=34) of the children were at risk of becoming overweight.BMI/age classificationidentified25% (n=38) of the children as overweight and a further 12% (n=19) as obese. Out of the sample, 12%(n=17) of mothers and 8% (n=7) of fathers were categorised as overweight-to-obese according to the SA specific waist circumference(WC)cut-offs. Out of the children, 15% (n=22) have at least one parent who was overweight-to-obese. Traditional WC categories were classified48% (n=67) of the mothers as overweight-to-obese and at high risk for metabolic syndrome. Of all the lifestyle diseases, hypertension was the most prevalent with 29% (n=41) of households having at least one parent with hypertension. Parental physical activity was grossly overestimated, and the results found to be invalid. The Diet Variety and Frequency score resulted in a mean of 65.00 (n=154, SD=27.37) out of a possible 100 for the households in this sample, and junk food was consumed on three to four occasions per day in 32% (n=49) of households. There were no significant associations found between the parents’ variables and underweight children. Statistically small to medium effect associations were found between parental weight (both SA specific and traditional categories) and overweight children (classified by WHZ and BMI/age). Conclusions and recommendations: The prevalence of overweight and obesity among children in the NMBM was high. The only possible underlying cause of childhood overweight and obesity in pre-school children in the NMBM that could be determined by this study was parents’ weight classified by WC. However, it must be reiterated that due to the cross-sectional nature of the study, an association does not immediately mean causation, and the results are not adequate to rule out other underlying factors influencing childhood obesity. It is recommended that the results of the study are used to incentivise the final implementation of all the intervention targets laid out in the Strategic Plan for the Prevention and Control of Obesity in South Africa 2015-2020 in NMB, and for the development of the future obesity strategy after 2020. The results have shown the necessity for future health interventions to be targeted at the family as a unit.
- Full Text:
- Date Issued: 2020
- Authors: Wilson, Teresa Margaret
- Date: 2020
- Subjects: Nutrition--Evaluation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/46344 , vital:39602
- Description: Introduction: Childhood overweight and obesity is an escalating global health issue. In Africa, overweight and obesity prevalence in children has nearly doubled since 2000(World Health Organisation, 2018).TheSANHANES-1 study (2013) identified that overweight and obesity in were most prevalent in urban informal areas of South Africa, with approximately a quarter of the children classified as overweight or obese (Shisana et al., 2013).In the Nelson Mandela Bay Municipality(NMBM), a double burden of disease was identified in the lower socio-economic population (Phekana et al., 2016). This study and others recommended further study into the contributing factors and behaviours which play a role in the development of overweight and obesity in children. These include household dietary intake, family history of lifestyle diseases, as well as the children’s and parental physical activity and sedentary time (Zhang et al.,2016).Aim: The aim of the study was to determine the associations between family history of diseases of lifestyle, lifestyle behaviour and anthropometric nutritional status of pre-school children in NMBM to describe underlying causes of childhood overweight and obesity.Methods: A cross-sectional design, using a quantitative approach, was used for this study(Ethics approval: H18-HEA-DIET-004). The study population included adult parents and/or caregivers of children from urban areas of Nelson Mandela Bay Municipality attending crèches and schools in these areas, in the age group from birth to 96 months (8 years). Randomised cluster sampling of crèches and schools from an existing database of anthropometrical data of children attending these crèches and schools in the area was done and a final sample of n=155obtained. With the assistance of a trained fieldworker, respondents completed a questionnaire detailing the family history of lifestyle diseases, physical activity levels and sedentary screen time behaviours, and a graphical adjusted version of a household dietary diversity questionnaire. Data about children’s activity levels in the preschool/creche environment was collected by the fieldworker by assessing the ECD centres’daily activity schedules. The anthropometric data of the children of the respondents was accessed from an existing database of these measurements. The data was described using means and standard deviations. Inferential statistics determined any existing associations between these underlying influences of childhood obesity.Results: Only 2% (n=3) of the children were underweight and 12% (n=9) were at risk of becoming underweight as classified by WAZ. HAZ scores identified26% (n=40) of the children at risk of becoming stunted, and 6% (n=9) of the children were already stunted. WHZ classified5% (n=8)of the children as overweight and 5% (n=8)as obese. A further 22% (n=34) of the children were at risk of becoming overweight.BMI/age classificationidentified25% (n=38) of the children as overweight and a further 12% (n=19) as obese. Out of the sample, 12%(n=17) of mothers and 8% (n=7) of fathers were categorised as overweight-to-obese according to the SA specific waist circumference(WC)cut-offs. Out of the children, 15% (n=22) have at least one parent who was overweight-to-obese. Traditional WC categories were classified48% (n=67) of the mothers as overweight-to-obese and at high risk for metabolic syndrome. Of all the lifestyle diseases, hypertension was the most prevalent with 29% (n=41) of households having at least one parent with hypertension. Parental physical activity was grossly overestimated, and the results found to be invalid. The Diet Variety and Frequency score resulted in a mean of 65.00 (n=154, SD=27.37) out of a possible 100 for the households in this sample, and junk food was consumed on three to four occasions per day in 32% (n=49) of households. There were no significant associations found between the parents’ variables and underweight children. Statistically small to medium effect associations were found between parental weight (both SA specific and traditional categories) and overweight children (classified by WHZ and BMI/age). Conclusions and recommendations: The prevalence of overweight and obesity among children in the NMBM was high. The only possible underlying cause of childhood overweight and obesity in pre-school children in the NMBM that could be determined by this study was parents’ weight classified by WC. However, it must be reiterated that due to the cross-sectional nature of the study, an association does not immediately mean causation, and the results are not adequate to rule out other underlying factors influencing childhood obesity. It is recommended that the results of the study are used to incentivise the final implementation of all the intervention targets laid out in the Strategic Plan for the Prevention and Control of Obesity in South Africa 2015-2020 in NMB, and for the development of the future obesity strategy after 2020. The results have shown the necessity for future health interventions to be targeted at the family as a unit.
- Full Text:
- Date Issued: 2020
Azadipyrromethenes for applications in photodynamic antimicrobial chemotherapy, photodynamic therapy and optical limiting
- Authors: Dubazana, Nadine
- Date: 2020
- Subjects: Dyes and dyeing -- Chemistry , Photochemotherapy , Cancer -- Photochemotherapy , Anti-infective agents , Staphylococcus aureus , Nonlinear optics , Azadipyrromethenes , BODIPY
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/166150 , vital:41333
- Description: Azadipyrromethenes, azaBODIPYs and zinc azadipyrromethene complexes were prepared and characterised to examine the effect on their photophysical properties of incorporating phenyl groups at the 1,3,5,7-positions with electron-donating and withdrawing groups at the para-positions. To enhance their ability to generate singlet oxygen, appropriate structural modifications were made through the addition of a Zn(II) ion or halogenation at the 2,6 positions. In vitro photodynamic therapy (PDT) studies targeting MCF-7 human breast cancer cells were carried out. To evaluate and understand the effectiveness of the dyes as photosensitisers, cellular uptake, phototoxicity and the half-maximal inhibitory concentration (IC50) values were analysed. Photodynamic antimicrobial chemotherapy (PACT) studies were also carried out to study the effectiveness of the dyes against Staphylococcus aureus (S. aureus). Dyes with donor-π-acceptor (D-π-A) properties were synthesised and tested against the second harmonic of the Nd:YAG laser in optical limiting (OL) studies. The second-order hyperpolarisability, third-order susceptibility and nonlinear absorption coefficient values were determined. The results suggest that 1,3,5,7-azaBODIPY dyes may be less suitable for use in this context than analogous D-π-A 3,5-distyrylBODIPY dyes. Molecular modelling was carried out to identify the structure-property relationships of the synthesised dyes by analysing trends in the energies of the frontier molecular orbitals (MOs) and spectroscopic properties.
- Full Text:
- Date Issued: 2020
- Authors: Dubazana, Nadine
- Date: 2020
- Subjects: Dyes and dyeing -- Chemistry , Photochemotherapy , Cancer -- Photochemotherapy , Anti-infective agents , Staphylococcus aureus , Nonlinear optics , Azadipyrromethenes , BODIPY
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/166150 , vital:41333
- Description: Azadipyrromethenes, azaBODIPYs and zinc azadipyrromethene complexes were prepared and characterised to examine the effect on their photophysical properties of incorporating phenyl groups at the 1,3,5,7-positions with electron-donating and withdrawing groups at the para-positions. To enhance their ability to generate singlet oxygen, appropriate structural modifications were made through the addition of a Zn(II) ion or halogenation at the 2,6 positions. In vitro photodynamic therapy (PDT) studies targeting MCF-7 human breast cancer cells were carried out. To evaluate and understand the effectiveness of the dyes as photosensitisers, cellular uptake, phototoxicity and the half-maximal inhibitory concentration (IC50) values were analysed. Photodynamic antimicrobial chemotherapy (PACT) studies were also carried out to study the effectiveness of the dyes against Staphylococcus aureus (S. aureus). Dyes with donor-π-acceptor (D-π-A) properties were synthesised and tested against the second harmonic of the Nd:YAG laser in optical limiting (OL) studies. The second-order hyperpolarisability, third-order susceptibility and nonlinear absorption coefficient values were determined. The results suggest that 1,3,5,7-azaBODIPY dyes may be less suitable for use in this context than analogous D-π-A 3,5-distyrylBODIPY dyes. Molecular modelling was carried out to identify the structure-property relationships of the synthesised dyes by analysing trends in the energies of the frontier molecular orbitals (MOs) and spectroscopic properties.
- Full Text:
- Date Issued: 2020
Bayesian accelerated life tests for the Weibull distribution under non-informative priors
- Authors: Mostert, Philip
- Date: 2020
- Subjects: Accelerated life testing -- Statistical methods , Accelerated life testing -- Mathematical models , Failure time data analysis , Bayesian statistical decision theory , Monte Carlo method , Weibull distribution
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/172181 , vital:42173
- Description: In a competitive world where products are designed to last for long periods of time, obtaining time-to-failure data is both difficult and costly. Hence for products with high reliability, accelerated life testing is required to obtain relevant life-data quickly. This is done by placing the products under higher-than-use stress levels, thereby causing the products to fail prematurely. Part of the analysis of accelerated life-data requires a life distribution that describes the lifetime of a product at a given stress level and a life-stress relationship – which is some function that describes the way in which the life distribution changes across different stress levels. In this thesis it is assumed that the underlying life distribution is the wellknown Weibull distribution, with shape parameter constant over all stress levels and scale parameter as a log-linear function of stress. The primary objective of this thesis is to obtain estimates from Bayesian analysis, and this thesis considers five types of non-informative prior distributions: Jeffreys’ prior, reference priors, maximal data information prior, uniform prior and probability matching priors. Since the associated posterior distribution under all the derived non-informative priors are of an unknown form, the propriety of the posterior distributions is assessed to ensure admissible results. For comparison purposes, estimates obtained via the method of maximum likelihood are also considered. Finding these estimates requires solving non-linear equations, hence the Newton-Raphson algorithm is used to obtain estimates. A simulation study based on the time-to-failure of accelerated data is conducted to compare results between maximum likelihood and Bayesian estimates. As a result of the Bayesian posterior distributions being analytically intractable, two methods to obtain Bayesian estimates are considered: Markov chain Monte Carlo methods and Lindley’s approximation technique. In the simulation study the posterior means and the root mean squared error values of the estimates under the symmetric squared error loss function and the two asymmetric loss functions: the LINEX loss function and general entropy loss function, are considered. Furthermore the coverage rates for the Bayesian Markov chain Monte Carlo and maximum likelihood estimates are found, and are compared by their average interval lengths. A case study using a dataset based on accelerated time-to-failure of an insulating fluid is considered. The fit of these data for the Weibull distribution is studied and is compared to that of other popular life distributions. A full simulation study is conducted to illustrate convergence of the proper posterior distributions. Both maximum likelihood and Bayesian estimates are found for these data. The deviance information criterion is used to compare Bayesian estimates between the prior distributions. The case study is concluded by finding reliability estimates of the data at use-stress levels.
- Full Text:
- Date Issued: 2020
- Authors: Mostert, Philip
- Date: 2020
- Subjects: Accelerated life testing -- Statistical methods , Accelerated life testing -- Mathematical models , Failure time data analysis , Bayesian statistical decision theory , Monte Carlo method , Weibull distribution
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/172181 , vital:42173
- Description: In a competitive world where products are designed to last for long periods of time, obtaining time-to-failure data is both difficult and costly. Hence for products with high reliability, accelerated life testing is required to obtain relevant life-data quickly. This is done by placing the products under higher-than-use stress levels, thereby causing the products to fail prematurely. Part of the analysis of accelerated life-data requires a life distribution that describes the lifetime of a product at a given stress level and a life-stress relationship – which is some function that describes the way in which the life distribution changes across different stress levels. In this thesis it is assumed that the underlying life distribution is the wellknown Weibull distribution, with shape parameter constant over all stress levels and scale parameter as a log-linear function of stress. The primary objective of this thesis is to obtain estimates from Bayesian analysis, and this thesis considers five types of non-informative prior distributions: Jeffreys’ prior, reference priors, maximal data information prior, uniform prior and probability matching priors. Since the associated posterior distribution under all the derived non-informative priors are of an unknown form, the propriety of the posterior distributions is assessed to ensure admissible results. For comparison purposes, estimates obtained via the method of maximum likelihood are also considered. Finding these estimates requires solving non-linear equations, hence the Newton-Raphson algorithm is used to obtain estimates. A simulation study based on the time-to-failure of accelerated data is conducted to compare results between maximum likelihood and Bayesian estimates. As a result of the Bayesian posterior distributions being analytically intractable, two methods to obtain Bayesian estimates are considered: Markov chain Monte Carlo methods and Lindley’s approximation technique. In the simulation study the posterior means and the root mean squared error values of the estimates under the symmetric squared error loss function and the two asymmetric loss functions: the LINEX loss function and general entropy loss function, are considered. Furthermore the coverage rates for the Bayesian Markov chain Monte Carlo and maximum likelihood estimates are found, and are compared by their average interval lengths. A case study using a dataset based on accelerated time-to-failure of an insulating fluid is considered. The fit of these data for the Weibull distribution is studied and is compared to that of other popular life distributions. A full simulation study is conducted to illustrate convergence of the proper posterior distributions. Both maximum likelihood and Bayesian estimates are found for these data. The deviance information criterion is used to compare Bayesian estimates between the prior distributions. The case study is concluded by finding reliability estimates of the data at use-stress levels.
- Full Text:
- Date Issued: 2020
Biology, stock assessment and angler attitudes towards the introduction of slot size limits for a recreationally important species Sparodon durbanensis (Sparidae) in South Africa
- Authors: Hewett, Kyle
- Date: 2020
- Subjects: Sparidae -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48389 , vital:40855
- Description: Sparodon durbanensis (white musselcracker) is an endemic fish species in the Family Sparidae found in shallow (< 20 m) coastal waters from the Western Cape to KwaZulu-Natal. It is large-growing, late-maturing, long-lived and is a popular target species in the South African marine shore-based line and spear fisheries. Management regulations for the species have remained the same for over two decades despite anecdotal information of population declines. However, since the last life history-information for S. durbanensis was collected in the late 1980s, there is a paucity of contemporary information needed to inform wise management. The aim of this study was to collect contemporary socio-ecological information on the species and its fishery in order to better inform the management of the species. In order to do this, the growth-rate of historical and contemporary samples of Sparodon durbanensis was compared, a length-based stock assessment was performed and the knowledge and attitudes of anglers towards the introduction of improved regulations were investigated. The growth-rate was compared using otolith width as a proxy for fish growth. It was found that the growth-rate had remained relatively stable between 1963 and 2010, suggesting that S. durbanensis may be resilient to the increasing levels of environmental variability observed throughout its range and that the historical growth parameters determined for this species may remain applicable for contemporary stock assessment. The batch fecundity was determined for 50 mm size classes and used to estimate the percentage cumulative population batch fecundity using historical 803 mm FL (904 mm TL) and contemporary 776 mm FL (874 mm TL) length structure, respectively. Based on these observations a suitable harvest slot limit of 600-850 mm TL was suggested. A Length-Based Spawning Potential Ratio (SPR) model was used to provide the first formal stock assessment for S. durbanensis. The input parameters of M/k=1.44, L∞=1021 mm FL, L50=350 mm FL and L95=800 mm FL and length composition data comprising of 134 lengths obtained from a collection of competitive angling catches, estimated a SPR of 41%, which is above the 40% target reference point. A total of 126 online and face– to-face, replica questionnaires were completed by spearfishermen and recreational shore anglers. Responses indicated that anglers that target S. durbanensis are generally a specialized group who are knowledgeable about the biology and ecology of the species and are passionate about the conservation of the species. Participants indicated that Marine Protected Areas are likely the most effective regulation in the current suite of regulations used to manage the fishery and suggested that poor law enforcement was the major factor inhibiting the efficacy of fishery regulations. New proposed regulations, such as a harvest slot limit (and particularly the one between 600-850 mm TL) for S. durbanensis, was well supported, however participants suggested that non-compliance was a concern. Although, the SPR remained above the 40% target reference point, further declines in the stock status should be prevented through the implementation of a 600-850 mm TL harvest slot limit. Based on the findings of this study, this limit should provide protection against both growth and recruitment overfishing by providing protection to sexually immature, fast growing fish and to large adults that contribute the greatest proportion to population replenishment.
- Full Text:
- Date Issued: 2020
- Authors: Hewett, Kyle
- Date: 2020
- Subjects: Sparidae -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48389 , vital:40855
- Description: Sparodon durbanensis (white musselcracker) is an endemic fish species in the Family Sparidae found in shallow (< 20 m) coastal waters from the Western Cape to KwaZulu-Natal. It is large-growing, late-maturing, long-lived and is a popular target species in the South African marine shore-based line and spear fisheries. Management regulations for the species have remained the same for over two decades despite anecdotal information of population declines. However, since the last life history-information for S. durbanensis was collected in the late 1980s, there is a paucity of contemporary information needed to inform wise management. The aim of this study was to collect contemporary socio-ecological information on the species and its fishery in order to better inform the management of the species. In order to do this, the growth-rate of historical and contemporary samples of Sparodon durbanensis was compared, a length-based stock assessment was performed and the knowledge and attitudes of anglers towards the introduction of improved regulations were investigated. The growth-rate was compared using otolith width as a proxy for fish growth. It was found that the growth-rate had remained relatively stable between 1963 and 2010, suggesting that S. durbanensis may be resilient to the increasing levels of environmental variability observed throughout its range and that the historical growth parameters determined for this species may remain applicable for contemporary stock assessment. The batch fecundity was determined for 50 mm size classes and used to estimate the percentage cumulative population batch fecundity using historical 803 mm FL (904 mm TL) and contemporary 776 mm FL (874 mm TL) length structure, respectively. Based on these observations a suitable harvest slot limit of 600-850 mm TL was suggested. A Length-Based Spawning Potential Ratio (SPR) model was used to provide the first formal stock assessment for S. durbanensis. The input parameters of M/k=1.44, L∞=1021 mm FL, L50=350 mm FL and L95=800 mm FL and length composition data comprising of 134 lengths obtained from a collection of competitive angling catches, estimated a SPR of 41%, which is above the 40% target reference point. A total of 126 online and face– to-face, replica questionnaires were completed by spearfishermen and recreational shore anglers. Responses indicated that anglers that target S. durbanensis are generally a specialized group who are knowledgeable about the biology and ecology of the species and are passionate about the conservation of the species. Participants indicated that Marine Protected Areas are likely the most effective regulation in the current suite of regulations used to manage the fishery and suggested that poor law enforcement was the major factor inhibiting the efficacy of fishery regulations. New proposed regulations, such as a harvest slot limit (and particularly the one between 600-850 mm TL) for S. durbanensis, was well supported, however participants suggested that non-compliance was a concern. Although, the SPR remained above the 40% target reference point, further declines in the stock status should be prevented through the implementation of a 600-850 mm TL harvest slot limit. Based on the findings of this study, this limit should provide protection against both growth and recruitment overfishing by providing protection to sexually immature, fast growing fish and to large adults that contribute the greatest proportion to population replenishment.
- Full Text:
- Date Issued: 2020
BODIPY dyes for application in the photo-oxidation of pollutants, photodynamic antimicrobial chemotherapy, and nonlinear optics
- Authors: Kelechi, Lebechi Augustus
- Date: 2020
- Subjects: Dyes and dyeing -- Chemistry , Fluorescent probes , Fluorescence spectroscopy
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/140298 , vital:37859
- Description: The synthesis and structural characterization of a series of BODIPY dyes to analyze both the effects of halogenations at the 2,6-positions and the introduction of styryl groups at the 3,5-positions. The photophysical properties of these dyes were investigated to determine their suitability as singlet oxygen-generating photosensitiser dyes for application in photocatalytic degradation of azo dyes and in photodynamic antimicrobial chemotherapy (PACT). Upon halogenation, the dyes showed high to moderate singlet oxygen quantum yields. The potential utility of electrospun polystyrene (PS) nanofibres embedded with halogenated BODIPY dyes for the photocatalytic degradation of Orange G and Methyl Orange from textile industry effluents were investigated. A comparison of the singlet oxygen quantum yield of the BODIPY dyes in solution and when embedded in the PS nanofibres support demonstrates that its photosensitiser properties are maintained in the nanofibre mats. The photocatalytic degradation properties of the PS nanofibres for Orange G and Methyl Orange were determined by using a 530 nm and 660 nm light-emitting diodes. The rate of photodegradation increases with both the Orange G and Methyl Orange concentrations and follows pseudo-first-order kinetics. The PACT activities of brominated BODIPYs on Escherichia coli and Staphylococcus aureus were investigated. Log reduction values of over 9 were obtained during the photoinactivation of Staphylococcus aureus. To be able to red-shift the main spectral band of the BODIPY dyes into the therapeutic window, styryl groups were introduced at the 3,5-positions through a modified Knoevenagel condensation reaction. Because the red-shifted spectral band lies above 532 nm, the second harmonic of the Nd:YAG laser, there is very minute absorption at this wavelength. One of the novel brominated BODIPY dyes was investigated for its potential utility as optical limiting materials in nonlinear optics (NLO), and the dyes demonstrated typical nonlinear absorption behaviour characterised by reverse saturable absorption (RSA) in Z-scan measurements. Excellent optical limiting parameters were obtained for third-order susceptibility and hyperpolarisability.
- Full Text:
- Date Issued: 2020
- Authors: Kelechi, Lebechi Augustus
- Date: 2020
- Subjects: Dyes and dyeing -- Chemistry , Fluorescent probes , Fluorescence spectroscopy
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/140298 , vital:37859
- Description: The synthesis and structural characterization of a series of BODIPY dyes to analyze both the effects of halogenations at the 2,6-positions and the introduction of styryl groups at the 3,5-positions. The photophysical properties of these dyes were investigated to determine their suitability as singlet oxygen-generating photosensitiser dyes for application in photocatalytic degradation of azo dyes and in photodynamic antimicrobial chemotherapy (PACT). Upon halogenation, the dyes showed high to moderate singlet oxygen quantum yields. The potential utility of electrospun polystyrene (PS) nanofibres embedded with halogenated BODIPY dyes for the photocatalytic degradation of Orange G and Methyl Orange from textile industry effluents were investigated. A comparison of the singlet oxygen quantum yield of the BODIPY dyes in solution and when embedded in the PS nanofibres support demonstrates that its photosensitiser properties are maintained in the nanofibre mats. The photocatalytic degradation properties of the PS nanofibres for Orange G and Methyl Orange were determined by using a 530 nm and 660 nm light-emitting diodes. The rate of photodegradation increases with both the Orange G and Methyl Orange concentrations and follows pseudo-first-order kinetics. The PACT activities of brominated BODIPYs on Escherichia coli and Staphylococcus aureus were investigated. Log reduction values of over 9 were obtained during the photoinactivation of Staphylococcus aureus. To be able to red-shift the main spectral band of the BODIPY dyes into the therapeutic window, styryl groups were introduced at the 3,5-positions through a modified Knoevenagel condensation reaction. Because the red-shifted spectral band lies above 532 nm, the second harmonic of the Nd:YAG laser, there is very minute absorption at this wavelength. One of the novel brominated BODIPY dyes was investigated for its potential utility as optical limiting materials in nonlinear optics (NLO), and the dyes demonstrated typical nonlinear absorption behaviour characterised by reverse saturable absorption (RSA) in Z-scan measurements. Excellent optical limiting parameters were obtained for third-order susceptibility and hyperpolarisability.
- Full Text:
- Date Issued: 2020
Building a flexible and inexpensive multi-layer switch for software-defined networks
- Authors: Magwenzi, Tinashe
- Date: 2020
- Subjects: Software-defined networking (Computer network technology) , Telecommunication -- Switching systems , OpenFlow (Computer network protocol) , Local area networks (Computer networks)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/142841 , vital:38122
- Description: Software-Defined Networking (SDN) is a paradigm which enables the realisation of programmable network through the separation of the control logic from the forwarding functions. This separation is a departure from the traditional architecture. Much of the work done in SDN enabled devices has concentrated on higher end, high speed networks (10s GBit/s 100s GBit/s), rather than the relatively low bandwidth links (10s MBit/s to a few GBit/s) which are seen, for example, in South Africa. As SDN is increasingly becoming more accepted, due to its advantages over the traditional networks, it has been adopted for industrial purposes such as networking in data centres and network providers. The demand for programmable networks is increasing but is limited by the ability of providers to upgrade their infrastructure. In addition, as access to the Internet has become less expensive, the use of Internet is increasing in academic institutions, NGOs, and small to medium enterprises. This thesis details a means of building and managing a small scale Software-Defined Network using commodity hardware and open source tools. Core to the SDN Network illustrated in this thesis is the prototype of a multi-layer SDN switch. The proposed device is targeted to serve lower bandwidth communication (in relation to commercially produced high speed SDN-enabled devices). The performance of the prototype multilayer switch had shown to achieve: data-rates of up to 99.998%, average latencies that are under 40µs during forwarding/switching and under 100µs during routing while using packet sizes between 64 bytes and 1518 bytes, and a jitter of less than 15µs during all tests. This research explores in detail the design, development, and management of a multi-layer switch and its placement and integration in small scale SDN network. This includes testing of Layer 2 forwarding and Layer 3 routing, OpenFlow compliance testing, the management of the switch using created SDN applications, and real life network functionality such as forwarding, routing and VLAN networking to demonstrate its real world applicability.
- Full Text:
- Date Issued: 2020
- Authors: Magwenzi, Tinashe
- Date: 2020
- Subjects: Software-defined networking (Computer network technology) , Telecommunication -- Switching systems , OpenFlow (Computer network protocol) , Local area networks (Computer networks)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/142841 , vital:38122
- Description: Software-Defined Networking (SDN) is a paradigm which enables the realisation of programmable network through the separation of the control logic from the forwarding functions. This separation is a departure from the traditional architecture. Much of the work done in SDN enabled devices has concentrated on higher end, high speed networks (10s GBit/s 100s GBit/s), rather than the relatively low bandwidth links (10s MBit/s to a few GBit/s) which are seen, for example, in South Africa. As SDN is increasingly becoming more accepted, due to its advantages over the traditional networks, it has been adopted for industrial purposes such as networking in data centres and network providers. The demand for programmable networks is increasing but is limited by the ability of providers to upgrade their infrastructure. In addition, as access to the Internet has become less expensive, the use of Internet is increasing in academic institutions, NGOs, and small to medium enterprises. This thesis details a means of building and managing a small scale Software-Defined Network using commodity hardware and open source tools. Core to the SDN Network illustrated in this thesis is the prototype of a multi-layer SDN switch. The proposed device is targeted to serve lower bandwidth communication (in relation to commercially produced high speed SDN-enabled devices). The performance of the prototype multilayer switch had shown to achieve: data-rates of up to 99.998%, average latencies that are under 40µs during forwarding/switching and under 100µs during routing while using packet sizes between 64 bytes and 1518 bytes, and a jitter of less than 15µs during all tests. This research explores in detail the design, development, and management of a multi-layer switch and its placement and integration in small scale SDN network. This includes testing of Layer 2 forwarding and Layer 3 routing, OpenFlow compliance testing, the management of the switch using created SDN applications, and real life network functionality such as forwarding, routing and VLAN networking to demonstrate its real world applicability.
- Full Text:
- Date Issued: 2020
Change of perspectives and behaviour regarding lifestyle, with emphasis on dietary habits, in a rural community
- Authors: Barnard, Mariska
- Date: 2020
- Subjects: Food habits
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/46384 , vital:39565
- Description: Background: The steady increase in deaths due to non-communicable diseases (NCDs) in South Africa is raising concern, as 63% of all deaths worldwide are attributed to NCDs and these diseases cause 36 million deaths each year, with 80 % of incidences occurring in low-and middle-income countries. In rural communities where income is increasing, the prevalence of NCDs are increasing as well. Due to the lack of NCD prevention and treatment in rural communities, it is expected that, if health promotion strategies are not implemented and socio-economic development in South Africa continues, there will soon be an uncontrollable NCD epidemic. It has been found that dietary risks affected people’s healthirrespective of their age, gender or residential sociodemographic development and that dietary improvement might prevent one in every five deaths worldwide.Aim:The aim of this study was to determine the factors that influence the perceptions and behaviour in a rural community with a low socio-economic status regarding dietary habits and to use the knowledge to formulate an effective dietary modification strategy.Designand methodology:For this study,action research with a quantitative and qualitative component was followed.The quantitative component focuses on measureable aspects, and the qualitative component focuses on meaning. Data was collected following the standard operating procedure for anthropometry, blood pressure and blood glucose. Further methods used were questionnaires, 24-hour dietary recalls and focus group discussions. Data were analysed using Microsoft Excel, FoodFinder3 and other calculations.Sample and setting:A convenience sample (n = 16) wasused and this study was undertaken on request of the non-governmental organization, Karoo Angels and included all participants who earn an income and who do not work for themselves, that were willing to participate and living in Rietbron and Vondeling, in the Sarah BaartmanDistrict in the Eastern Cape. Results:Weight changes took place, both the crafters in the mild thinness category gained weight, one gained 3.9 kg and the other 0.5 kg. The three crafters in the normal category did not have to gain or lose weight, but all three ofthem gained an average of 3.6 kg. For the group who had to lose weight, no statistically significant weight change took place from before the intervention (76.08 ±17.67 kg) to after the intervention (75.81 ± 17.81 kg, t(10) = 0.692, p = 0.505). The maximum weight lost ivwas 3.1 kg and the maximum weight gained was 3.2 kg. Changes took place regarding BMI, waist circumference, waist-to-hip ratio and neck circumference. Some positively changed their BMI status.After the implementation of the intervention, there was a slight decrease in frequency of alcohol consumption, but smoking and physical activity remained mostly the same. Hypertension was the most prevalent NCD and is linked to smoking and alcohol consumption which is prevalent in this study. Fruit and vegetable consumption is low, and a slight increase in consumption was evident. A maximum dietary diversityscore of seven and minimum of two, where the mean was 3.81was found. The crafters’ diet did not meet the DASH diet recommendation,the mean energy distribution is of all macronutrients differ with ±4% and none of the participants’ mean micronutrients intake met the recommendations of the DASH diet or RDA. Factors that prevent them from reaching their goals included low income, low availability of fruit, vegetables and transport and no storage for food.Conclusion:It is important to consider the individuals’ living conditions, resources, knowledge, motivation and social group. The environment and resources available have a significant impact on the lifestyle of the individuals. Directing efforts of behaviour change to increase dietary diversity as the main objective, might be a more efficient way to change behaviour.Recommendations:Future studies should consider doing this study over a longer time period. The involvement of a psychologist would also be beneficial to assist the process of behaviour change.
- Full Text:
- Date Issued: 2020
- Authors: Barnard, Mariska
- Date: 2020
- Subjects: Food habits
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/46384 , vital:39565
- Description: Background: The steady increase in deaths due to non-communicable diseases (NCDs) in South Africa is raising concern, as 63% of all deaths worldwide are attributed to NCDs and these diseases cause 36 million deaths each year, with 80 % of incidences occurring in low-and middle-income countries. In rural communities where income is increasing, the prevalence of NCDs are increasing as well. Due to the lack of NCD prevention and treatment in rural communities, it is expected that, if health promotion strategies are not implemented and socio-economic development in South Africa continues, there will soon be an uncontrollable NCD epidemic. It has been found that dietary risks affected people’s healthirrespective of their age, gender or residential sociodemographic development and that dietary improvement might prevent one in every five deaths worldwide.Aim:The aim of this study was to determine the factors that influence the perceptions and behaviour in a rural community with a low socio-economic status regarding dietary habits and to use the knowledge to formulate an effective dietary modification strategy.Designand methodology:For this study,action research with a quantitative and qualitative component was followed.The quantitative component focuses on measureable aspects, and the qualitative component focuses on meaning. Data was collected following the standard operating procedure for anthropometry, blood pressure and blood glucose. Further methods used were questionnaires, 24-hour dietary recalls and focus group discussions. Data were analysed using Microsoft Excel, FoodFinder3 and other calculations.Sample and setting:A convenience sample (n = 16) wasused and this study was undertaken on request of the non-governmental organization, Karoo Angels and included all participants who earn an income and who do not work for themselves, that were willing to participate and living in Rietbron and Vondeling, in the Sarah BaartmanDistrict in the Eastern Cape. Results:Weight changes took place, both the crafters in the mild thinness category gained weight, one gained 3.9 kg and the other 0.5 kg. The three crafters in the normal category did not have to gain or lose weight, but all three ofthem gained an average of 3.6 kg. For the group who had to lose weight, no statistically significant weight change took place from before the intervention (76.08 ±17.67 kg) to after the intervention (75.81 ± 17.81 kg, t(10) = 0.692, p = 0.505). The maximum weight lost ivwas 3.1 kg and the maximum weight gained was 3.2 kg. Changes took place regarding BMI, waist circumference, waist-to-hip ratio and neck circumference. Some positively changed their BMI status.After the implementation of the intervention, there was a slight decrease in frequency of alcohol consumption, but smoking and physical activity remained mostly the same. Hypertension was the most prevalent NCD and is linked to smoking and alcohol consumption which is prevalent in this study. Fruit and vegetable consumption is low, and a slight increase in consumption was evident. A maximum dietary diversityscore of seven and minimum of two, where the mean was 3.81was found. The crafters’ diet did not meet the DASH diet recommendation,the mean energy distribution is of all macronutrients differ with ±4% and none of the participants’ mean micronutrients intake met the recommendations of the DASH diet or RDA. Factors that prevent them from reaching their goals included low income, low availability of fruit, vegetables and transport and no storage for food.Conclusion:It is important to consider the individuals’ living conditions, resources, knowledge, motivation and social group. The environment and resources available have a significant impact on the lifestyle of the individuals. Directing efforts of behaviour change to increase dietary diversity as the main objective, might be a more efficient way to change behaviour.Recommendations:Future studies should consider doing this study over a longer time period. The involvement of a psychologist would also be beneficial to assist the process of behaviour change.
- Full Text:
- Date Issued: 2020
Coherent detection of data and timing signals over optical fiber for telescope networks
- Authors: Nfanyana, Ketshabile
- Date: 2020
- Subjects: Fiber optics , Very large array telescopes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49226 , vital:41612
- Description: Telescope networks are increasingly being developed with networks such as the SKA telescope demanding the use of high-end technology to be incorporated. These networks require accurate clock signals to be transported to antennas as well as massive data to be transported from individual parabolic array antennas to a central computer for data analysis. To achieve this, optical fiber technology forms the backbone of these networks, proving high speed transmission and required bandwidth. For a distributed telescope network, coherent detection technology serves as the ideal optical fiber technology candidate for transport of information to a correlator. Use of this technology constitutes too many benefits. Sensitivity of the system is improved, and advanced modulation formats can be employed thereby improving spectral efficiency. Furthermore, coherent detection allows for digital signal processing algorithms to be employed for equalization of transmission impairments such as chromatic dispersion (CD), polarization mode dispersion (PMD), phase noise and nonlinear effects in the electrical domain. CD equalization is performed in the time or frequency domain using digital filters which suppress the fibers dispersion effectively. PMD equalization is usually performed in the time domain through the use of adaptive filters which employ algorithms such as least mean squares (LMS) and constant modulus algorithm (CMA). These algorithms further equalize residual CD. In mitigation of phase noise (carrier phase recovery), feed-forward and feedback carrier phase algorithms are used. Fiber nonlinearities and other impairments are compensated using the digital backpropagation algorithm which solves for the Manakov equation and nonlinear Schrödinger equation (NLSE). Distribution of stable clock signals to individual antennas is an important aspect of telescope networks. Clock signals are used to drive the digitizers and time stamping of received antenna information. These clock signals can be distributed using coherent detection technology by phase modulating the clock so as to provide inherent phase modulation robustness to noise through the fiber. In this thesis, we present coherent detection of non-return-to-zero pseudorandom binary sequence (PRBS-7) using binary phase shift keying (BPSK) through 26.6 km non-zero dispersion shifted fiber (NZDSF) at 10 Gbps. Digital signal processing for equalization of CD and PMD was performed offline using MATLAB software. For residual CD and PMD equalization, the LMS algorithm was used. The performance of the system, bit error rate (BER), was compared with that of an intensity modulated on-off keying (OOK) signal at the same bit rate. Basing on receiver sensitivity performance of OOK at 10-9 bit error rate, BPSK achieved superior performance with receiver sensitivity improvements of 18.37 dB and 13.89 dB attained for back-to-back and transmission over fiber, respectively. Phase modulation transmission of a 4 GHz clock signal was also conducted. Frequency instability, Allan variance and phase noise, of phase modulated clock was compared with that of intensity modulated clock. Moreover, we present an all optical clock generation scheme using frequency heterodyning technique. Allan variance values in the range of 10-10 were attained. The frequency instability of this clock generation scheme was quantified using the spectrum analyzer method. Furthermore, an all-photonic technique for data latency tracking of 5G networks over optical fiber is presented. The technique is spectrally efficient and is able to track latency down to the nano second timescale.
- Full Text:
- Date Issued: 2020
- Authors: Nfanyana, Ketshabile
- Date: 2020
- Subjects: Fiber optics , Very large array telescopes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49226 , vital:41612
- Description: Telescope networks are increasingly being developed with networks such as the SKA telescope demanding the use of high-end technology to be incorporated. These networks require accurate clock signals to be transported to antennas as well as massive data to be transported from individual parabolic array antennas to a central computer for data analysis. To achieve this, optical fiber technology forms the backbone of these networks, proving high speed transmission and required bandwidth. For a distributed telescope network, coherent detection technology serves as the ideal optical fiber technology candidate for transport of information to a correlator. Use of this technology constitutes too many benefits. Sensitivity of the system is improved, and advanced modulation formats can be employed thereby improving spectral efficiency. Furthermore, coherent detection allows for digital signal processing algorithms to be employed for equalization of transmission impairments such as chromatic dispersion (CD), polarization mode dispersion (PMD), phase noise and nonlinear effects in the electrical domain. CD equalization is performed in the time or frequency domain using digital filters which suppress the fibers dispersion effectively. PMD equalization is usually performed in the time domain through the use of adaptive filters which employ algorithms such as least mean squares (LMS) and constant modulus algorithm (CMA). These algorithms further equalize residual CD. In mitigation of phase noise (carrier phase recovery), feed-forward and feedback carrier phase algorithms are used. Fiber nonlinearities and other impairments are compensated using the digital backpropagation algorithm which solves for the Manakov equation and nonlinear Schrödinger equation (NLSE). Distribution of stable clock signals to individual antennas is an important aspect of telescope networks. Clock signals are used to drive the digitizers and time stamping of received antenna information. These clock signals can be distributed using coherent detection technology by phase modulating the clock so as to provide inherent phase modulation robustness to noise through the fiber. In this thesis, we present coherent detection of non-return-to-zero pseudorandom binary sequence (PRBS-7) using binary phase shift keying (BPSK) through 26.6 km non-zero dispersion shifted fiber (NZDSF) at 10 Gbps. Digital signal processing for equalization of CD and PMD was performed offline using MATLAB software. For residual CD and PMD equalization, the LMS algorithm was used. The performance of the system, bit error rate (BER), was compared with that of an intensity modulated on-off keying (OOK) signal at the same bit rate. Basing on receiver sensitivity performance of OOK at 10-9 bit error rate, BPSK achieved superior performance with receiver sensitivity improvements of 18.37 dB and 13.89 dB attained for back-to-back and transmission over fiber, respectively. Phase modulation transmission of a 4 GHz clock signal was also conducted. Frequency instability, Allan variance and phase noise, of phase modulated clock was compared with that of intensity modulated clock. Moreover, we present an all optical clock generation scheme using frequency heterodyning technique. Allan variance values in the range of 10-10 were attained. The frequency instability of this clock generation scheme was quantified using the spectrum analyzer method. Furthermore, an all-photonic technique for data latency tracking of 5G networks over optical fiber is presented. The technique is spectrally efficient and is able to track latency down to the nano second timescale.
- Full Text:
- Date Issued: 2020
Combination ecosystem green engineering and early life history processes to enhance the intertidal biodiversity in the Port of East London
- Authors: Mafanya, Sandisiwer
- Date: 2020
- Subjects: Biotic communities -- South Africa -- East London , Perna -- Ecology --South Africa -- South Africa-- East London , Mexilhao mussel -- Ecology -- South Africa -- East London , Habitat (Ecology) -- Modification -- South Africa -- East London , Benthic animals -- Effect of habitat modification on -- South Africa -- East London , Harbors -- Environmental aspects -- South Africa -- East London
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/166376 , vital:41357
- Description: Marine coastal ecosystems are highly impacted by anthropogenic activities, including the development of, and practices within, harbours and/or ports. Artificial structures associated with harbours have a different chemical composition, texture and orientation than that of the natural benthic habitats they have replaced, and are therefore not generally favourable for the settlement and occurrence of indigenous species. Attempts are being made to identify what structures and materials can be used to aid in the rehabilitation of native species within harbours. The aim of this study was to investigate the effects of utilising environmentally-friendly artificial structures (tiles) with varying complexity (crevices and ridges with different depths) with ecological engineers (the indigenous bivalve Perna perna), on the associated benthic biodiversity within an international port in South Africa (Port of East London). The objectives of the study were to test the effects of artificial habitat complexity and the presence of bivalves on 1) the growth, mortality and biomass of a selected model species of ecosystem engineer (P. perna), and 2) the associated intertidal biodiversity. Tiles seeded with bivalves (P. perna) were deployed at two sites in the Port of East London and monitored monthly over a period of 12 months (November 2016-October 2017) to assess survival, growth and associated biodiversity. Environmental variables were also measured every month. The results of the three-way repeated measures ANOVAs indicated that tile treatment (especially high complexity of 2.5 and 5 cm) had an effect on the diversity of mobile species, length, height and biomass of the bivalves used as model ecosystem engineer, indicating the potentials for protection from wave dislodgement and refuge provision. Treatment (especially flat tiles) also had an effect on sessile/sedentary species diversity, indicating the greater proportion of space provided by these non-complex tiles. In addition, month had an effect on the mortality, height and biomass of the bivalves. Mortality was highest in October 2017, while the growth in height and biomass of P. perna were largest in January and October 2017 respectively. The use of artificial tiles also had a positive effect on the survival, growth, and biomass of bivalves (especially the length, weight and dry weight in 2.5 cm and 5 cm complexity). Additionally, this research investigated patterns of settlement and recruitment of the local bivalve population (P. perna) in the Port of East London and adjacent natural coastline to understand the early life history temporal and spatial dynamics of this model ecosystem engineer species. Settlement and recruitment were assessed every month by deploying and replacing artificial collectors for a total period of 19 months (November 2016-May 2018). The results of the two-way ANOVAs indicated that month and site (port vs natural) had an effect on settlement and recruitment of bivalves. Settlement and recruitment of bivalves were highest in July 2017 (port) and March 2018 (natural rocky shore). This study has highlighted that the use of artificial concrete tiles with increased complexity, as well as the investigation of the early stages of mussel populations could be important to consider in a framework of rehabilitation of urban coastal environments such as the Port of East London. Ecological engineering (in terms of increased complexity and heterogeneity) has indeed the potentials to be incorporated in South African programmes aiming at improving natural biodiversity in coastal urban environments. Nonetheless, the spatio-temporal variability of early driver of mussel populations (settlement and recruitment) is also an important feature to be closely monitored if biodiversity in South African coastal armouring is to be enhanced effectively and in the long term.
- Full Text:
- Date Issued: 2020
- Authors: Mafanya, Sandisiwer
- Date: 2020
- Subjects: Biotic communities -- South Africa -- East London , Perna -- Ecology --South Africa -- South Africa-- East London , Mexilhao mussel -- Ecology -- South Africa -- East London , Habitat (Ecology) -- Modification -- South Africa -- East London , Benthic animals -- Effect of habitat modification on -- South Africa -- East London , Harbors -- Environmental aspects -- South Africa -- East London
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/166376 , vital:41357
- Description: Marine coastal ecosystems are highly impacted by anthropogenic activities, including the development of, and practices within, harbours and/or ports. Artificial structures associated with harbours have a different chemical composition, texture and orientation than that of the natural benthic habitats they have replaced, and are therefore not generally favourable for the settlement and occurrence of indigenous species. Attempts are being made to identify what structures and materials can be used to aid in the rehabilitation of native species within harbours. The aim of this study was to investigate the effects of utilising environmentally-friendly artificial structures (tiles) with varying complexity (crevices and ridges with different depths) with ecological engineers (the indigenous bivalve Perna perna), on the associated benthic biodiversity within an international port in South Africa (Port of East London). The objectives of the study were to test the effects of artificial habitat complexity and the presence of bivalves on 1) the growth, mortality and biomass of a selected model species of ecosystem engineer (P. perna), and 2) the associated intertidal biodiversity. Tiles seeded with bivalves (P. perna) were deployed at two sites in the Port of East London and monitored monthly over a period of 12 months (November 2016-October 2017) to assess survival, growth and associated biodiversity. Environmental variables were also measured every month. The results of the three-way repeated measures ANOVAs indicated that tile treatment (especially high complexity of 2.5 and 5 cm) had an effect on the diversity of mobile species, length, height and biomass of the bivalves used as model ecosystem engineer, indicating the potentials for protection from wave dislodgement and refuge provision. Treatment (especially flat tiles) also had an effect on sessile/sedentary species diversity, indicating the greater proportion of space provided by these non-complex tiles. In addition, month had an effect on the mortality, height and biomass of the bivalves. Mortality was highest in October 2017, while the growth in height and biomass of P. perna were largest in January and October 2017 respectively. The use of artificial tiles also had a positive effect on the survival, growth, and biomass of bivalves (especially the length, weight and dry weight in 2.5 cm and 5 cm complexity). Additionally, this research investigated patterns of settlement and recruitment of the local bivalve population (P. perna) in the Port of East London and adjacent natural coastline to understand the early life history temporal and spatial dynamics of this model ecosystem engineer species. Settlement and recruitment were assessed every month by deploying and replacing artificial collectors for a total period of 19 months (November 2016-May 2018). The results of the two-way ANOVAs indicated that month and site (port vs natural) had an effect on settlement and recruitment of bivalves. Settlement and recruitment of bivalves were highest in July 2017 (port) and March 2018 (natural rocky shore). This study has highlighted that the use of artificial concrete tiles with increased complexity, as well as the investigation of the early stages of mussel populations could be important to consider in a framework of rehabilitation of urban coastal environments such as the Port of East London. Ecological engineering (in terms of increased complexity and heterogeneity) has indeed the potentials to be incorporated in South African programmes aiming at improving natural biodiversity in coastal urban environments. Nonetheless, the spatio-temporal variability of early driver of mussel populations (settlement and recruitment) is also an important feature to be closely monitored if biodiversity in South African coastal armouring is to be enhanced effectively and in the long term.
- Full Text:
- Date Issued: 2020
Combining DNA barcoding and morphology to identify larval fishes from the nearshore environment off the south-east coast of South Africa
- Authors: Somana, Zinzi Sinazo
- Date: 2020
- Subjects: Fishes -- Larvae -- South Africa -- Identification , Fishes -- Genetics -- Research -- Technique , Fishes -- South Africa -- Classification , Genetic markers
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/144605 , vital:38362
- Description: The early life history stages of most marine fish species are undescribed. The problem is, most of these fishes have pelagic larvae which are minute, delicate forms. Linking the larval stage to an adult counterpart is extremely challenging as larvae are morphologically different from the adults. Historically, larval fish identification relied solely on distinguishing morphological characteristics and meristic measurements, which has resulted in taxonomic confusion and misidentification. The introduction of the deoxyribonucleic acid (DNA) barcoding technique as an alternative approach has been successful in positively identifying larval fishes. The correct identification of larval specimens is the key to a better understanding of larval ecology, which underpins the success of any adult fish population. This study aimed to positively identify larval fishes of the south-east coast of South Africa using morphological characteristics and DNA barcoding. Larval and eggs specimens for this study were collected from the shallow nearshore waters of the south-east coast of South Africa. A total of 177 larval specimens were used for morphological analysis. Body shape, gut shape, pigmentation and morphometric measurements (such as body depth, preanal length and total body length) were used to identify each specimen to the family level. In addition, a fragment of mitochondrial cytochrome c oxidase subunit 1 gene (COI) was adopted for sequencing to identify larval fish specimens and fish eggs. Sequences generated from this study were compared to those in the Barcode of Life Database (BOLD). When there were no close matches to a sequence, the GenBank nucleic acid sequence database, maintained by the National Center for Biotechnology Information (NCBI), was used as an alternative. A total of 18 different families were identified through morphology. Seventy-seven of the 177 larval specimens were not subjected to morphological identification due to physical damage. The majority of larvae identified using morphological characteristics belonged to either the Sparidae, Tripterygiidae or Gobiesocidae fish families. Through DNA barcoding, 12 fish families, 16 genera and 18 different species were identified. Ten DNA barcodes (categorised as ‘no match’) from 10 different larval specimens were not identified through any of the online databases. Therefore, the 2% threshold value was used to identify members of the same species. The K2P genetic distance relationships were calculated among the no match sequences and downloaded probability matches from NCBI. This resulted in two unknown specimens assigned to the Blenniidae and Gobiidae. All other taxa were identified to species level, except specimens representing the Gobiidae and Tripterygiidae families. Based on the K2P genetic distances Gobiidae representatives were categorised as members of the Caffrogobius genus. Twenty-eight barcodes represented specimens from the Tripterygiidae. DNA barcode data from COI was analysed using the standard phylogenetic procedures in MEGA6 to examine relationships and differentiation among sequences. These could not be identified to the lowest taxonomic rank due to limited sequence data to compare them with. The sequence data from these specimens gave different results in the two online databases. BOLD results were to family level (Tripterygiidae) and NCBI to the species level (Clinidae: Pavoclinus profundus). Results in this study confirmed the efficiency of the DNA barcoding technique in species level identification of fish larvae. The evidence from genetic barcodes of the Tripterygiidae specimens, supported by morphological characteristics, suggests the need for thorough research to identify the individuals to the species level. The fact that this study identified taxonomically problematic Gobiidae and Tripterygiidae specimens suggests that studies similar to this may highlight additional diversity and help to resolve the taxonomy of other species in these families. However, the lack of reference sequence data from the adult specimens, and especially those with cryptic diversity, were both shortcomings for the positive identification of larvae. With that being said, it shows the necessity for more research to be conducted on barcoding of larvae in general as to accommodate all kinds of species from biodiversity to economic perspectives.
- Full Text:
- Date Issued: 2020
- Authors: Somana, Zinzi Sinazo
- Date: 2020
- Subjects: Fishes -- Larvae -- South Africa -- Identification , Fishes -- Genetics -- Research -- Technique , Fishes -- South Africa -- Classification , Genetic markers
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/144605 , vital:38362
- Description: The early life history stages of most marine fish species are undescribed. The problem is, most of these fishes have pelagic larvae which are minute, delicate forms. Linking the larval stage to an adult counterpart is extremely challenging as larvae are morphologically different from the adults. Historically, larval fish identification relied solely on distinguishing morphological characteristics and meristic measurements, which has resulted in taxonomic confusion and misidentification. The introduction of the deoxyribonucleic acid (DNA) barcoding technique as an alternative approach has been successful in positively identifying larval fishes. The correct identification of larval specimens is the key to a better understanding of larval ecology, which underpins the success of any adult fish population. This study aimed to positively identify larval fishes of the south-east coast of South Africa using morphological characteristics and DNA barcoding. Larval and eggs specimens for this study were collected from the shallow nearshore waters of the south-east coast of South Africa. A total of 177 larval specimens were used for morphological analysis. Body shape, gut shape, pigmentation and morphometric measurements (such as body depth, preanal length and total body length) were used to identify each specimen to the family level. In addition, a fragment of mitochondrial cytochrome c oxidase subunit 1 gene (COI) was adopted for sequencing to identify larval fish specimens and fish eggs. Sequences generated from this study were compared to those in the Barcode of Life Database (BOLD). When there were no close matches to a sequence, the GenBank nucleic acid sequence database, maintained by the National Center for Biotechnology Information (NCBI), was used as an alternative. A total of 18 different families were identified through morphology. Seventy-seven of the 177 larval specimens were not subjected to morphological identification due to physical damage. The majority of larvae identified using morphological characteristics belonged to either the Sparidae, Tripterygiidae or Gobiesocidae fish families. Through DNA barcoding, 12 fish families, 16 genera and 18 different species were identified. Ten DNA barcodes (categorised as ‘no match’) from 10 different larval specimens were not identified through any of the online databases. Therefore, the 2% threshold value was used to identify members of the same species. The K2P genetic distance relationships were calculated among the no match sequences and downloaded probability matches from NCBI. This resulted in two unknown specimens assigned to the Blenniidae and Gobiidae. All other taxa were identified to species level, except specimens representing the Gobiidae and Tripterygiidae families. Based on the K2P genetic distances Gobiidae representatives were categorised as members of the Caffrogobius genus. Twenty-eight barcodes represented specimens from the Tripterygiidae. DNA barcode data from COI was analysed using the standard phylogenetic procedures in MEGA6 to examine relationships and differentiation among sequences. These could not be identified to the lowest taxonomic rank due to limited sequence data to compare them with. The sequence data from these specimens gave different results in the two online databases. BOLD results were to family level (Tripterygiidae) and NCBI to the species level (Clinidae: Pavoclinus profundus). Results in this study confirmed the efficiency of the DNA barcoding technique in species level identification of fish larvae. The evidence from genetic barcodes of the Tripterygiidae specimens, supported by morphological characteristics, suggests the need for thorough research to identify the individuals to the species level. The fact that this study identified taxonomically problematic Gobiidae and Tripterygiidae specimens suggests that studies similar to this may highlight additional diversity and help to resolve the taxonomy of other species in these families. However, the lack of reference sequence data from the adult specimens, and especially those with cryptic diversity, were both shortcomings for the positive identification of larvae. With that being said, it shows the necessity for more research to be conducted on barcoding of larvae in general as to accommodate all kinds of species from biodiversity to economic perspectives.
- Full Text:
- Date Issued: 2020
Constraints in attainment of sustainable human settlements at Kwamaphumulo Local Municipality
- Authors: Sikhosana, Phindokuhle
- Date: 2020
- Subjects: Human settlements , Sustainable development
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/47181 , vital:39829
- Description: This study sought to investigate the constraints in the attainment of sustainable human settlement in KwaMaphumulo Local Municipality at iLembe District in KwaZulu-Natal, South Africa. The aim of this study was to investigate the constraints that limit the achievement of the ideal of sustainable human settlement development in the KwaMaphumulo Local Municipality. Furthermore, the study sought to determine the impact of these constraints on sustainable development and to proffer measures that can be taken to combat stagnant or underdevelopment in the area. A mixed-method approach is followed in this study, which considers a triangulation of quantitative and qualitative data collection, analysis and interpretation techniques. It is important to note that in the past years since South Africa became a democratic country, there have been countless efforts with regard to overcoming the problems created during the apartheid era. These problems stemmed from a distorted spatial, social, economic and political background that was advocated by both segregationist public policies and the planning systems of the Apartheid Regime. In recent years, South African cities have also been faced with environmental issues, which are imperative to the future development of the country. With all these issues in mind, we see that the many efforts that are put in place by government always fall short of solving the problems. This research report looked at the constraints that affect the KwaMaphumulo Local Municipality in attaining sustainable human settlements and whether the efforts of redistribution and equality have been enough to overcome the problems. The key findings of the study were that constraints in attaining sustainable human settlements in the KwaMaphumulo Local Municipality negatively impacts on the development in the area. The level of services being provided is poor. There is an apparent disconnect between traditional leaders and the municipality councillor as development management and vision are concerned. Furthermore, the development programmes and projects do not seem to address the critical needs of the community. Housing development is narrow minded with a focus on the top structure and a failure to include basic services and infrastructure. Houses built that are financed by subsidies are of poor quality. The latter situation results in more able‐ bodied, skilled and capable people emigrating to developed areas.
- Full Text:
- Date Issued: 2020
- Authors: Sikhosana, Phindokuhle
- Date: 2020
- Subjects: Human settlements , Sustainable development
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/47181 , vital:39829
- Description: This study sought to investigate the constraints in the attainment of sustainable human settlement in KwaMaphumulo Local Municipality at iLembe District in KwaZulu-Natal, South Africa. The aim of this study was to investigate the constraints that limit the achievement of the ideal of sustainable human settlement development in the KwaMaphumulo Local Municipality. Furthermore, the study sought to determine the impact of these constraints on sustainable development and to proffer measures that can be taken to combat stagnant or underdevelopment in the area. A mixed-method approach is followed in this study, which considers a triangulation of quantitative and qualitative data collection, analysis and interpretation techniques. It is important to note that in the past years since South Africa became a democratic country, there have been countless efforts with regard to overcoming the problems created during the apartheid era. These problems stemmed from a distorted spatial, social, economic and political background that was advocated by both segregationist public policies and the planning systems of the Apartheid Regime. In recent years, South African cities have also been faced with environmental issues, which are imperative to the future development of the country. With all these issues in mind, we see that the many efforts that are put in place by government always fall short of solving the problems. This research report looked at the constraints that affect the KwaMaphumulo Local Municipality in attaining sustainable human settlements and whether the efforts of redistribution and equality have been enough to overcome the problems. The key findings of the study were that constraints in attaining sustainable human settlements in the KwaMaphumulo Local Municipality negatively impacts on the development in the area. The level of services being provided is poor. There is an apparent disconnect between traditional leaders and the municipality councillor as development management and vision are concerned. Furthermore, the development programmes and projects do not seem to address the critical needs of the community. Housing development is narrow minded with a focus on the top structure and a failure to include basic services and infrastructure. Houses built that are financed by subsidies are of poor quality. The latter situation results in more able‐ bodied, skilled and capable people emigrating to developed areas.
- Full Text:
- Date Issued: 2020
Constraints in attainment of sustainable human settlements at Kwamaphumulo Local Municipality
- Authors: Sikhosana, Phindokuhle
- Date: 2020
- Subjects: Human settlements -- South Africa -- Kwamaphumulo Local Municipality , Land settlement -- South Africa -- Kwamaphumulo Local Municipality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48808 , vital:41141
- Description: This study sought to investigate the constraints in the attainment of sustainable human settlement in KwaMaphumulo Local Municipality at iLembe District in KwaZulu-Natal, South Africa. The aim of this study was to investigate the constraints that limit the achievement of the ideal of sustainable human settlement development in the KwaMaphumulo Local Municipality. Furthermore, the study sought to determine the impact of these constraints on sustainable development and to proffer measures that can be taken to combat stagnant or underdevelopment in the area. A mixed-method approach is followed in this study, which considers a triangulation of quantitative and qualitative data collection, analysis and interpretation techniques. It is important to note that in the past years since South Africa became a democratic country, there have been countless efforts with regard to overcoming the problems created during the apartheid era. These problems stemmed from a distorted spatial, social, economic and political background that was advocated by both segregationist public policies and the planning systems of the Apartheid Regime. In recent years, South African cities have also been faced with environmental issues, which are imperative to the future development of the country. With all these issues in mind, we see that the many efforts that are put in place by government always fall short of solving the problems. This research report looked at the constraints that affect the KwaMaphumulo Local Municipality in attaining sustainable human settlements and whether the efforts of redistribution and equality have been enough to overcome the problems. The key findings of the study were that constraints in attaining sustainable human settlements in the KwaMaphumulo Local Municipality negatively impacts on the development in the area. The level of services being provided is poor. There is an apparent disconnect between traditional leaders and the municipality councillor as development management and vision are concerned. Furthermore, the development programmes and projects do not seem to address the critical needs of the community. Housing development is narrow minded with a focus on the top structure and a failure to include basic services and infrastructure. Houses built that are 6 financed by subsidies are of poor quality. The latter situation results in more able‐ bodied, skilled and capable people emigrating to developed areas.
- Full Text:
- Date Issued: 2020
- Authors: Sikhosana, Phindokuhle
- Date: 2020
- Subjects: Human settlements -- South Africa -- Kwamaphumulo Local Municipality , Land settlement -- South Africa -- Kwamaphumulo Local Municipality
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48808 , vital:41141
- Description: This study sought to investigate the constraints in the attainment of sustainable human settlement in KwaMaphumulo Local Municipality at iLembe District in KwaZulu-Natal, South Africa. The aim of this study was to investigate the constraints that limit the achievement of the ideal of sustainable human settlement development in the KwaMaphumulo Local Municipality. Furthermore, the study sought to determine the impact of these constraints on sustainable development and to proffer measures that can be taken to combat stagnant or underdevelopment in the area. A mixed-method approach is followed in this study, which considers a triangulation of quantitative and qualitative data collection, analysis and interpretation techniques. It is important to note that in the past years since South Africa became a democratic country, there have been countless efforts with regard to overcoming the problems created during the apartheid era. These problems stemmed from a distorted spatial, social, economic and political background that was advocated by both segregationist public policies and the planning systems of the Apartheid Regime. In recent years, South African cities have also been faced with environmental issues, which are imperative to the future development of the country. With all these issues in mind, we see that the many efforts that are put in place by government always fall short of solving the problems. This research report looked at the constraints that affect the KwaMaphumulo Local Municipality in attaining sustainable human settlements and whether the efforts of redistribution and equality have been enough to overcome the problems. The key findings of the study were that constraints in attaining sustainable human settlements in the KwaMaphumulo Local Municipality negatively impacts on the development in the area. The level of services being provided is poor. There is an apparent disconnect between traditional leaders and the municipality councillor as development management and vision are concerned. Furthermore, the development programmes and projects do not seem to address the critical needs of the community. Housing development is narrow minded with a focus on the top structure and a failure to include basic services and infrastructure. Houses built that are 6 financed by subsidies are of poor quality. The latter situation results in more able‐ bodied, skilled and capable people emigrating to developed areas.
- Full Text:
- Date Issued: 2020
Constraints in attainment of sustainable human settlements at Kwamaphumulo Local Municipality
- Authors: Sikhosana, Phindokuhle
- Date: 2020
- Subjects: Human settlements -- South Africa -- KwaZulu-Natal , Low-income housing -- South Africa -- KwaZulu-Natal City planning Land use, Urban
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/47198 , vital:39826
- Description: This study sought to investigate the constraints in the attainment of sustainable human settlement in KwaMaphumulo Local Municipality at iLembe District in KwaZulu-Natal, South Africa. The aim of this study was to investigate the constraints that limit the achievement of the ideal of sustainable human settlement development in the KwaMaphumulo Local Municipality. Furthermore, the study sought to determine the impact of these constraints on sustainable development and to proffer measures that can be taken to combat stagnant or underdevelopment in the area. A mixed-method approach is followed in this study, which considers a triangulation of quantitative and qualitative data collection, analysis and interpretation techniques. It is important to note that in the past years since South Africa became a democratic country, there have been countless efforts with regard to overcoming the problems created during the apartheid era. These problems stemmed from a distorted spatial, social, economic and political background that was advocated by both segregationist public policies and the planning systems of the Apartheid Regime. In recent years, South African cities have also been faced with environmental issues, which are imperative to the future development of the country. With all these issues in mind, we see that the many efforts that are put in place by government always fall short of solving the problems. This research report looked at the constraints that affect the KwaMaphumulo Local Municipality in attaining sustainable human settlements and whether the efforts of redistribution and equality have been enough to overcome the problems. The key findings of the study were that constraints in attaining sustainable human settlements in the KwaMaphumulo Local Municipality negatively impacts on the development in the area. The level of services being provided is poor. There is an apparent disconnect between traditional leaders and the municipality councillor as development management and vision are concerned. Furthermore, the development programmes and projects do not seem to address the critical needs of the community. Housing development is narrow minded with a focus on the top structure and a failure to include basic services and infrastructure. Houses built that are 6 financed by subsidies are of poor quality. The latter situation results in more able‐ bodied, skilled and capable people emigrating to developed areas.
- Full Text:
- Date Issued: 2020
- Authors: Sikhosana, Phindokuhle
- Date: 2020
- Subjects: Human settlements -- South Africa -- KwaZulu-Natal , Low-income housing -- South Africa -- KwaZulu-Natal City planning Land use, Urban
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/47198 , vital:39826
- Description: This study sought to investigate the constraints in the attainment of sustainable human settlement in KwaMaphumulo Local Municipality at iLembe District in KwaZulu-Natal, South Africa. The aim of this study was to investigate the constraints that limit the achievement of the ideal of sustainable human settlement development in the KwaMaphumulo Local Municipality. Furthermore, the study sought to determine the impact of these constraints on sustainable development and to proffer measures that can be taken to combat stagnant or underdevelopment in the area. A mixed-method approach is followed in this study, which considers a triangulation of quantitative and qualitative data collection, analysis and interpretation techniques. It is important to note that in the past years since South Africa became a democratic country, there have been countless efforts with regard to overcoming the problems created during the apartheid era. These problems stemmed from a distorted spatial, social, economic and political background that was advocated by both segregationist public policies and the planning systems of the Apartheid Regime. In recent years, South African cities have also been faced with environmental issues, which are imperative to the future development of the country. With all these issues in mind, we see that the many efforts that are put in place by government always fall short of solving the problems. This research report looked at the constraints that affect the KwaMaphumulo Local Municipality in attaining sustainable human settlements and whether the efforts of redistribution and equality have been enough to overcome the problems. The key findings of the study were that constraints in attaining sustainable human settlements in the KwaMaphumulo Local Municipality negatively impacts on the development in the area. The level of services being provided is poor. There is an apparent disconnect between traditional leaders and the municipality councillor as development management and vision are concerned. Furthermore, the development programmes and projects do not seem to address the critical needs of the community. Housing development is narrow minded with a focus on the top structure and a failure to include basic services and infrastructure. Houses built that are 6 financed by subsidies are of poor quality. The latter situation results in more able‐ bodied, skilled and capable people emigrating to developed areas.
- Full Text:
- Date Issued: 2020
Continuous flow synthesis of 5-formyl-2,4- dimethyl-1h-pyrrole-3-carboxylic acid, a key intermediate towards the synthesis of sunitinib anti-cancer drug
- Authors: Gqokoma, Zizo
- Date: 2020
- Subjects: Flow chemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48356 , vital:40852
- Description: The present trend in the pharmaceutical industry is towards adapting continuous flow processing with the main driving force behind this being the need to reduce environmental and economic costs. Continuous flow systems have proven to produce better quality products at lower costs, time and energy. As a result, this technique has diversified and expanded to provide novel, and practical solutions to not only organic synthesis but also renewable fuels and material science. The focus of this research work was to exploit continuous flow systems, to develop a continuous flow process that is energy and time effective, using commercial micro reactors to synthesize 5-formyl-2,4-dimethyl-1H-pyrrole-3-carboxylic acid, a key intermediate towards the synthesis of sunitinib, an anti-cancer drug. In this thesis, a successful study on the individual translation of a 5 step batch synthesis of 5- formyl-2,4-dimethyl-1H-pyrrole-3-carboxylic acid into optimised continuous flow syntheses is demonstrated. A comprehensive literature review and background on cancer, and an introduction to pyrrole rings, their role in disease treatments in addition to a brief introduction to continuous flow technology with its advantages, and comparison to classical batch methods are provided in the first chapter. Chapter two is detailing the experimental procedures utilised for both batch and continuous flow syntheses. The continuous flow synthesis of the four intermediates towards the target compound in this work proved to be far superior compared to their batch syntheses; excellent improvements in reaction yields and selectivity in addition to tremendously shorter reaction times were observed. This is expounded in chapter three with detailed discussions of the results attained during the continuous flow optimisation of each step within the scope of this research, are provided. The concluding remarks, the impact of this study and future work are elucidated in chapter four.
- Full Text:
- Date Issued: 2020
- Authors: Gqokoma, Zizo
- Date: 2020
- Subjects: Flow chemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/48356 , vital:40852
- Description: The present trend in the pharmaceutical industry is towards adapting continuous flow processing with the main driving force behind this being the need to reduce environmental and economic costs. Continuous flow systems have proven to produce better quality products at lower costs, time and energy. As a result, this technique has diversified and expanded to provide novel, and practical solutions to not only organic synthesis but also renewable fuels and material science. The focus of this research work was to exploit continuous flow systems, to develop a continuous flow process that is energy and time effective, using commercial micro reactors to synthesize 5-formyl-2,4-dimethyl-1H-pyrrole-3-carboxylic acid, a key intermediate towards the synthesis of sunitinib, an anti-cancer drug. In this thesis, a successful study on the individual translation of a 5 step batch synthesis of 5- formyl-2,4-dimethyl-1H-pyrrole-3-carboxylic acid into optimised continuous flow syntheses is demonstrated. A comprehensive literature review and background on cancer, and an introduction to pyrrole rings, their role in disease treatments in addition to a brief introduction to continuous flow technology with its advantages, and comparison to classical batch methods are provided in the first chapter. Chapter two is detailing the experimental procedures utilised for both batch and continuous flow syntheses. The continuous flow synthesis of the four intermediates towards the target compound in this work proved to be far superior compared to their batch syntheses; excellent improvements in reaction yields and selectivity in addition to tremendously shorter reaction times were observed. This is expounded in chapter three with detailed discussions of the results attained during the continuous flow optimisation of each step within the scope of this research, are provided. The concluding remarks, the impact of this study and future work are elucidated in chapter four.
- Full Text:
- Date Issued: 2020
Continuous flow synthesis of imatinib intermediates
- Authors: Rupapa, Harold Takunda
- Date: 2020
- Subjects: Flow chemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/47464 , vital:39993
- Description: In this thesis, an alternative approach using continuous flow chemistry towards imatinib intermediates is described; an important drug in the treatment of acute myeloid leukemia. Various protocols that describe the multistep batch organic synthesis of imatinib are outlined. Many of the batch synthetic protocols require long reaction times in the multistep synthesis towards the various imatinib intermediates. A broad description into the cancer epidemic such as myeloid leukemia, the cost of drug manufacture and the effect that the high cost of manufacture has on the accessibility to such treatment in Africa is outlined. Use of continuous flow reactors, the exploitation of various technologies and their advantages on organic synthesis compared to batch synthesis are also described. The batch reaction conditions needed for the multistep transformation towards imatinib were adapted to a continuous flow set up. The optimization investigation shows an improvement in the conversion in the various steps. The flow synthesis of the enaminone provided a conversion of 99% when in o-xylene and the ability to use backpressure regulators assisted the investigation at high temperatures. Solution-phase flow synthesis of the guanidinium nitrate, which gave low yields in batch, also showed an improvement in conversion, where in 30 minutes a conversion of 99% was confirmed by altering the co-solvent mixture. The cycloaddition reaction of the enaminone and the guanidinium nitrate salt, achieved 90% conversion to the 2-aminopyridine core at 180 oC. The nitro group reduction was achieved in the presence of a greener catalyst, namely iron pentanedionate, in the presence of hydrazine hydrate. The effect of temperature, molar equivalence and solvent on reaction conversions could be observed in these steps. The thesis is concluded in chapter 4, with the conclusion and recommendations for future work towards a scalable continuous flow synthesis of the imatinib intermediates.
- Full Text:
- Date Issued: 2020
- Authors: Rupapa, Harold Takunda
- Date: 2020
- Subjects: Flow chemistry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/47464 , vital:39993
- Description: In this thesis, an alternative approach using continuous flow chemistry towards imatinib intermediates is described; an important drug in the treatment of acute myeloid leukemia. Various protocols that describe the multistep batch organic synthesis of imatinib are outlined. Many of the batch synthetic protocols require long reaction times in the multistep synthesis towards the various imatinib intermediates. A broad description into the cancer epidemic such as myeloid leukemia, the cost of drug manufacture and the effect that the high cost of manufacture has on the accessibility to such treatment in Africa is outlined. Use of continuous flow reactors, the exploitation of various technologies and their advantages on organic synthesis compared to batch synthesis are also described. The batch reaction conditions needed for the multistep transformation towards imatinib were adapted to a continuous flow set up. The optimization investigation shows an improvement in the conversion in the various steps. The flow synthesis of the enaminone provided a conversion of 99% when in o-xylene and the ability to use backpressure regulators assisted the investigation at high temperatures. Solution-phase flow synthesis of the guanidinium nitrate, which gave low yields in batch, also showed an improvement in conversion, where in 30 minutes a conversion of 99% was confirmed by altering the co-solvent mixture. The cycloaddition reaction of the enaminone and the guanidinium nitrate salt, achieved 90% conversion to the 2-aminopyridine core at 180 oC. The nitro group reduction was achieved in the presence of a greener catalyst, namely iron pentanedionate, in the presence of hydrazine hydrate. The effect of temperature, molar equivalence and solvent on reaction conversions could be observed in these steps. The thesis is concluded in chapter 4, with the conclusion and recommendations for future work towards a scalable continuous flow synthesis of the imatinib intermediates.
- Full Text:
- Date Issued: 2020
Contributions to the systematics and ecology of Tulista Raf(Asphodelaceae subfam. Alooideae)
- Authors: Molteno, Steven Martin
- Date: 2020
- Subjects: Plant ecology -- South Africa , Plant ecology -- Comparative method Biodiversity , Species diversity
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49182 , vital:41608
- Description: The subject of this study is the taxonomy, morphology, distribution and ecology of Tulista Raf. (Asphodelaceae subfam. Alooideae), a genus of succulent plants that are endemic to South Africa. A lack of clarity on the taxonomy of this genus, coupled with an incomplete understanding of the distribution, ecology and habitat preferences of the constituent species, risks hampering the conservation of Tulista species, two of which are endangered species. The purpose of this study is therefore to address the need for a more detailed and consistent treatment of Tulista taxonomy and morphology, complemented by a study of the plants’ distribution and ecology. The work first provides a review of the relevant taxonomy and nomenclature, concluding with the presentation of the validly published names referring to Tulista. A detailed morphometric study resulted in strong support for one species, Tulista marginata (Lam.) G.D.Rowley, as well as for a grouping comprising Tulista pumila (L.) G.D.Rowley and Tulista minor (Aiton) Gideon F.Sm. & Molteno, with further moderate support for the distinction between the latter two species. The fourth out of the currently recognised species, Tulista kingiana (Poelln.) Gideon F.Sm. & Molteno, was only weakly characterised by the morphometric results, which suggested that its closest morphological affinity may be with hybrid plants that are sometimes found near T. marginata populations. The characterisation of some more controversial taxa was not supported in the results. Some changes to the circumscription of currently recognised Tulista species are also suggested by the results. In addition, field work conducted during the course of the study resulted in an expanded set of distribution data for the genus, together with certain habitat variables identified as potentially significant for the distribution and ecology of Tulista species.
- Full Text:
- Date Issued: 2020
- Authors: Molteno, Steven Martin
- Date: 2020
- Subjects: Plant ecology -- South Africa , Plant ecology -- Comparative method Biodiversity , Species diversity
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/49182 , vital:41608
- Description: The subject of this study is the taxonomy, morphology, distribution and ecology of Tulista Raf. (Asphodelaceae subfam. Alooideae), a genus of succulent plants that are endemic to South Africa. A lack of clarity on the taxonomy of this genus, coupled with an incomplete understanding of the distribution, ecology and habitat preferences of the constituent species, risks hampering the conservation of Tulista species, two of which are endangered species. The purpose of this study is therefore to address the need for a more detailed and consistent treatment of Tulista taxonomy and morphology, complemented by a study of the plants’ distribution and ecology. The work first provides a review of the relevant taxonomy and nomenclature, concluding with the presentation of the validly published names referring to Tulista. A detailed morphometric study resulted in strong support for one species, Tulista marginata (Lam.) G.D.Rowley, as well as for a grouping comprising Tulista pumila (L.) G.D.Rowley and Tulista minor (Aiton) Gideon F.Sm. & Molteno, with further moderate support for the distinction between the latter two species. The fourth out of the currently recognised species, Tulista kingiana (Poelln.) Gideon F.Sm. & Molteno, was only weakly characterised by the morphometric results, which suggested that its closest morphological affinity may be with hybrid plants that are sometimes found near T. marginata populations. The characterisation of some more controversial taxa was not supported in the results. Some changes to the circumscription of currently recognised Tulista species are also suggested by the results. In addition, field work conducted during the course of the study resulted in an expanded set of distribution data for the genus, together with certain habitat variables identified as potentially significant for the distribution and ecology of Tulista species.
- Full Text:
- Date Issued: 2020
Corruption elimination within the public infrastructure sector in the Eastern Cape
- Authors: Mvandaba, Nosicelo
- Date: 2020
- Subjects: Business logistics , Government purchasing -- South Africa -- Eastern Cape Management -- Procurement
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/46794 , vital:39662
- Description: The study aimed to reveal the existence of corruption within the public sector and to propose strategies to eliminate it within the supply chain management procurement processes and infrastructure within the public sector in the Province of the Eastern Cape. The study employed a mixed method of quantitative and qualitative data analysis. For the quantitative approach, a series of structured questionnaires were issued to employees within the public sector, many of whom are involved in the procurement process. The officials were asked to rate the views on the importance of the Batho Pele principles in the public sector, risks that may result to the project failure in the public infrastructure sector and the most prevalent causes of corruption For the qualitative method of the study, interviews were conducted for both civil servants and non-public servants who have been involved in procurement processes and coordinating projects. Also, the investigation units were interviewed to determine their views on corruption in the public sector. In addition, the study involved 92 officials within the Eastern Cape Province, and eight interviews were carried out. Initially, 101 public officials were to participate in the study. According to the information that was gathered qualitatively and quantitatively, the most effective methods of eradicating corruption within the procurement department of the public sector are the following: transparency in rules and policies, strengthening of internal audit, management of domestic politics, the emphasis of government focus on preventative rather than curative methods of eliminating corruption, strengthening of consequence management and introduction of anti-corruption committees. Giving monopolistic powers to one person was seen as a gateway to fraud. The research was limited to the views of the officials who are involved in procurement processes in the Province. Not only does the study uncover the possible causes of corruption and its level in the public service but offers constructive recommendations to eliminate it with the hope that economic development will be fostered and the infrastructural climate of the Eastern Cape enhanced.
- Full Text:
- Date Issued: 2020
- Authors: Mvandaba, Nosicelo
- Date: 2020
- Subjects: Business logistics , Government purchasing -- South Africa -- Eastern Cape Management -- Procurement
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/46794 , vital:39662
- Description: The study aimed to reveal the existence of corruption within the public sector and to propose strategies to eliminate it within the supply chain management procurement processes and infrastructure within the public sector in the Province of the Eastern Cape. The study employed a mixed method of quantitative and qualitative data analysis. For the quantitative approach, a series of structured questionnaires were issued to employees within the public sector, many of whom are involved in the procurement process. The officials were asked to rate the views on the importance of the Batho Pele principles in the public sector, risks that may result to the project failure in the public infrastructure sector and the most prevalent causes of corruption For the qualitative method of the study, interviews were conducted for both civil servants and non-public servants who have been involved in procurement processes and coordinating projects. Also, the investigation units were interviewed to determine their views on corruption in the public sector. In addition, the study involved 92 officials within the Eastern Cape Province, and eight interviews were carried out. Initially, 101 public officials were to participate in the study. According to the information that was gathered qualitatively and quantitatively, the most effective methods of eradicating corruption within the procurement department of the public sector are the following: transparency in rules and policies, strengthening of internal audit, management of domestic politics, the emphasis of government focus on preventative rather than curative methods of eliminating corruption, strengthening of consequence management and introduction of anti-corruption committees. Giving monopolistic powers to one person was seen as a gateway to fraud. The research was limited to the views of the officials who are involved in procurement processes in the Province. Not only does the study uncover the possible causes of corruption and its level in the public service but offers constructive recommendations to eliminate it with the hope that economic development will be fostered and the infrastructural climate of the Eastern Cape enhanced.
- Full Text:
- Date Issued: 2020
Cyclooxygenase-1 as an anti-stroke target: potential inhibitor identification and non-synonymous single nucleotide polymorphism analysis
- Authors: Muronzi, Tendai
- Date: 2020
- Subjects: Cerebrovascular disease , Cerebrovascular disease -- Treatment , Cerebrovascular disease -- Chemotherapy , Cyclooxygenases , High throughput screening (Drug development) , Drug development , Molecular dynamics , South African Natural Compounds Database , ZINC database
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/143404 , vital:38243
- Description: Stroke is the third leading cause of death worldwide, with 87% of cases being ischemic stroke. The two primary therapeutic strategies to reduce post-ischemic brain damage are cellular and vascular approaches. The vascular strategy aims to rapidly re-open obstructed blood vessels, while the cellular approach aims to interfere with the signalling pathways that facilitate neuron damage and death. Unfortunately, popular vascular treatments have adverse side effects, necessitating the need for alternative chemotherapeutics. In this study, cyclooxygenase-1 (COX-1), which plays a significant role in the post- ischemic neuroinflammation and neuronal death, was targeted for identification of novel drug compounds and to assess the effect of nsSNPs on its structure and function. In a drug discovery part, ligands from the South African Natural Compounds Database (SANCDB-https://sancdb.rubi.ru.ac.za/) and ZINC database (http://zinc15.docking.org/) were used for high-throughput virtual screening (HVTS) against COX-1. Additionally, five nsSNPs were being investigated to assess their impact on protein structure and function. Three of these SNPs were in the COX-1 dimer interface. Molecular docking and molecular dynamics simulations revealed asymmetric nature of the protein. Several ligands, peculiar to each monomer, exhibited favourable binding energies in the respective active sites. SNP analysis indicated effects on inter-monomer interactions and protein stability.
- Full Text:
- Date Issued: 2020
- Authors: Muronzi, Tendai
- Date: 2020
- Subjects: Cerebrovascular disease , Cerebrovascular disease -- Treatment , Cerebrovascular disease -- Chemotherapy , Cyclooxygenases , High throughput screening (Drug development) , Drug development , Molecular dynamics , South African Natural Compounds Database , ZINC database
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/143404 , vital:38243
- Description: Stroke is the third leading cause of death worldwide, with 87% of cases being ischemic stroke. The two primary therapeutic strategies to reduce post-ischemic brain damage are cellular and vascular approaches. The vascular strategy aims to rapidly re-open obstructed blood vessels, while the cellular approach aims to interfere with the signalling pathways that facilitate neuron damage and death. Unfortunately, popular vascular treatments have adverse side effects, necessitating the need for alternative chemotherapeutics. In this study, cyclooxygenase-1 (COX-1), which plays a significant role in the post- ischemic neuroinflammation and neuronal death, was targeted for identification of novel drug compounds and to assess the effect of nsSNPs on its structure and function. In a drug discovery part, ligands from the South African Natural Compounds Database (SANCDB-https://sancdb.rubi.ru.ac.za/) and ZINC database (http://zinc15.docking.org/) were used for high-throughput virtual screening (HVTS) against COX-1. Additionally, five nsSNPs were being investigated to assess their impact on protein structure and function. Three of these SNPs were in the COX-1 dimer interface. Molecular docking and molecular dynamics simulations revealed asymmetric nature of the protein. Several ligands, peculiar to each monomer, exhibited favourable binding energies in the respective active sites. SNP analysis indicated effects on inter-monomer interactions and protein stability.
- Full Text:
- Date Issued: 2020
Default in payment, an application of statistical learning techniques
- Authors: Gcakasi, Lulama
- Date: 2020
- Subjects: Credit -- South Africa -- Risk assessment , Risk management -- Statistical methods -- South Africa , Credit -- Management -- Statistical methods , Commercial statistics
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/141547 , vital:37984
- Description: The ability of financial institutions to detect whether a customer will default on their credit card payment is essential for its profitability. To that effect, financial institutions have credit scoring systems in place to be able to estimate the credit risk associated with a customer. Various classification models are used to develop credit scoring systems such as k-nearest neighbours, logistic regression and classification trees. This study aims to assess the performance of different classification models on the prediction of credit card payment default. Credit data is usually of high dimension and as a result dimension reduction techniques, namely principal component analysis and linear discriminant analysis, are used in this study as a means to improve model performance. Two classification models are used, namely neural networks and support vector machines. Model performance is evaluated using accuracy and area under the curve (AUC). The neuarl network classifier performed better than the support vector machine classifier as it produced higher accuracy rates and AUC values. Dimension reduction techniques were not effective in improving model performance but did result in less computationally expensive models.
- Full Text:
- Date Issued: 2020
- Authors: Gcakasi, Lulama
- Date: 2020
- Subjects: Credit -- South Africa -- Risk assessment , Risk management -- Statistical methods -- South Africa , Credit -- Management -- Statistical methods , Commercial statistics
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/141547 , vital:37984
- Description: The ability of financial institutions to detect whether a customer will default on their credit card payment is essential for its profitability. To that effect, financial institutions have credit scoring systems in place to be able to estimate the credit risk associated with a customer. Various classification models are used to develop credit scoring systems such as k-nearest neighbours, logistic regression and classification trees. This study aims to assess the performance of different classification models on the prediction of credit card payment default. Credit data is usually of high dimension and as a result dimension reduction techniques, namely principal component analysis and linear discriminant analysis, are used in this study as a means to improve model performance. Two classification models are used, namely neural networks and support vector machines. Model performance is evaluated using accuracy and area under the curve (AUC). The neuarl network classifier performed better than the support vector machine classifier as it produced higher accuracy rates and AUC values. Dimension reduction techniques were not effective in improving model performance but did result in less computationally expensive models.
- Full Text:
- Date Issued: 2020