On the Processing of InAsSb/GaSb photodiodes for infrared detection
- Authors: Odendaal, Vicky
- Date: 2008
- Subjects: Gallium arsenide semiconductors , Photovoltaic cells , Infrared detectors , Gas-detectors
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10523 , http://hdl.handle.net/10948/980 , Gallium arsenide semiconductors , Photovoltaic cells , Infrared detectors , Gas-detectors
- Description: The objective of this dissertation is the development of the necessary processing steps needed to manufacture infrared photodiodes on InAs1-xSbx material. Preliminary surface preparation steps were performed on both InAs and InSb material, thus covering both possible extremes of the antimony mole fraction. The first experiments endeavoured to characterise the effect of several possible etchants with regards to etch rate, repeatability, limitations for photolithographic patterning and the resultant surface roughness. The etchants investigated include a lactic acid based etchant, a sulphuric acid based etchant, an acetic acid based etchant, an ammonium based etchant, a hydrochloric acid based etchant as well as an organic rinse procedure. These cleaning and etching steps were evaluated at several temperatures. Measurements were performed on an Alpha Step stylus profiler as well as an atomic force microscope. Metal-insulator-semiconductor capacitor devices were manufactured, on both InAs and InSb material, in order to investigate the effects of the above-mentioned etchants combined with surface passivation techniques in terms of surface state densities. Capacitance-versus-bias voltage measurements were done to determine the resultant surface state densities and to compare these to the surface state density of an untreated reference sample. The surface passivation techniques included KOH, Na2S as well as (NH4)2S anodisation. Auger electron spectroscopy measurements were done on InAs and InSb material in order to examine possible surface contamination due to the etchants as well as combinations of these etching and anodisation procedures. The extent of surface coverage by contaminants as well as by the intrinsic elements was measured. The results of the cleaning and etching as well as the surface passivation studies were used to manufacture photovoltaic infrared diodes on an MOCVD (metal oxide chemical vapour deposition) grown p-InAs0.91Sb0.09/i- InAs0.91Sb0.09/n-GaSb structure. Current-versus-voltage and electro-optical measurements were performed on the these diodes in order to evaluate the effect of sulphuric acid based etching combined with KOH, Na2S or (NH4)2S anodisation on the detector performance. The results of surface passivated structures were compared to those of an unpassivated reference detector.
- Full Text:
- Date Issued: 2008
- Authors: Odendaal, Vicky
- Date: 2008
- Subjects: Gallium arsenide semiconductors , Photovoltaic cells , Infrared detectors , Gas-detectors
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10523 , http://hdl.handle.net/10948/980 , Gallium arsenide semiconductors , Photovoltaic cells , Infrared detectors , Gas-detectors
- Description: The objective of this dissertation is the development of the necessary processing steps needed to manufacture infrared photodiodes on InAs1-xSbx material. Preliminary surface preparation steps were performed on both InAs and InSb material, thus covering both possible extremes of the antimony mole fraction. The first experiments endeavoured to characterise the effect of several possible etchants with regards to etch rate, repeatability, limitations for photolithographic patterning and the resultant surface roughness. The etchants investigated include a lactic acid based etchant, a sulphuric acid based etchant, an acetic acid based etchant, an ammonium based etchant, a hydrochloric acid based etchant as well as an organic rinse procedure. These cleaning and etching steps were evaluated at several temperatures. Measurements were performed on an Alpha Step stylus profiler as well as an atomic force microscope. Metal-insulator-semiconductor capacitor devices were manufactured, on both InAs and InSb material, in order to investigate the effects of the above-mentioned etchants combined with surface passivation techniques in terms of surface state densities. Capacitance-versus-bias voltage measurements were done to determine the resultant surface state densities and to compare these to the surface state density of an untreated reference sample. The surface passivation techniques included KOH, Na2S as well as (NH4)2S anodisation. Auger electron spectroscopy measurements were done on InAs and InSb material in order to examine possible surface contamination due to the etchants as well as combinations of these etching and anodisation procedures. The extent of surface coverage by contaminants as well as by the intrinsic elements was measured. The results of the cleaning and etching as well as the surface passivation studies were used to manufacture photovoltaic infrared diodes on an MOCVD (metal oxide chemical vapour deposition) grown p-InAs0.91Sb0.09/i- InAs0.91Sb0.09/n-GaSb structure. Current-versus-voltage and electro-optical measurements were performed on the these diodes in order to evaluate the effect of sulphuric acid based etching combined with KOH, Na2S or (NH4)2S anodisation on the detector performance. The results of surface passivated structures were compared to those of an unpassivated reference detector.
- Full Text:
- Date Issued: 2008
Analysis of the extended defects in 3C-SiC
- Authors: Olivier, Ezra Jacobus
- Date: 2008
- Subjects: Crystals -- Defects , Crystallography , Silicon carbide
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10525 , http://hdl.handle.net/10948/730 , Crystals -- Defects , Crystallography , Silicon carbide
- Description: The dissertation focuses on the analysis of the extended defects present in as-grown and proton bombarded β-SiC (annealed and unannealed) grown by chemical vapour deposition (CVD) on (001) Si. The proton irradiation was done to a dose of 2.8 × 1016 protons/cm2 and the annealing took place at 1300°C and 1600°C for 1hr. The main techniques used for the analysis were transmission electron microscopy (TEM) and high resolution TEM (HRTEM). From the diffraction study of the material the phase of the SiC was confirmed to be the cubic beta phase with the zinc-blende structure. The main defects found in the β- SiC were stacking faults (SFs) with their associated partial dislocations and microtwins. The SFs were uniformly distributed throughout the foil. The SFs were identified as having a fault vector of the type 1/3 <111> with bonding partial dislocations of the type 1/6 <121> by using image simulation. The SFs were also found to be predominantly extrinsic in nature by using HRTEM analysis of SFs viewed edge-on. Also both bright and dar-field images of SFs on inclined planes exhibited symmetrical and complementary fringe contrast images. This is a result of the anomalous absorption ratio of SiC lying between that of Si and diamond. The analysis of the annealed and unannealed irradiated β-SiC yielded no evidence of radiation damage or change in the crystal structure of the β-SiC. This confirmed that β-SiC is a radiation resistant material. The critical proton dose for the creation of small dislocation loops seems to be higher than for other compound semiconductors with the zinc-blende structure.
- Full Text:
- Date Issued: 2008
- Authors: Olivier, Ezra Jacobus
- Date: 2008
- Subjects: Crystals -- Defects , Crystallography , Silicon carbide
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10525 , http://hdl.handle.net/10948/730 , Crystals -- Defects , Crystallography , Silicon carbide
- Description: The dissertation focuses on the analysis of the extended defects present in as-grown and proton bombarded β-SiC (annealed and unannealed) grown by chemical vapour deposition (CVD) on (001) Si. The proton irradiation was done to a dose of 2.8 × 1016 protons/cm2 and the annealing took place at 1300°C and 1600°C for 1hr. The main techniques used for the analysis were transmission electron microscopy (TEM) and high resolution TEM (HRTEM). From the diffraction study of the material the phase of the SiC was confirmed to be the cubic beta phase with the zinc-blende structure. The main defects found in the β- SiC were stacking faults (SFs) with their associated partial dislocations and microtwins. The SFs were uniformly distributed throughout the foil. The SFs were identified as having a fault vector of the type 1/3 <111> with bonding partial dislocations of the type 1/6 <121> by using image simulation. The SFs were also found to be predominantly extrinsic in nature by using HRTEM analysis of SFs viewed edge-on. Also both bright and dar-field images of SFs on inclined planes exhibited symmetrical and complementary fringe contrast images. This is a result of the anomalous absorption ratio of SiC lying between that of Si and diamond. The analysis of the annealed and unannealed irradiated β-SiC yielded no evidence of radiation damage or change in the crystal structure of the β-SiC. This confirmed that β-SiC is a radiation resistant material. The critical proton dose for the creation of small dislocation loops seems to be higher than for other compound semiconductors with the zinc-blende structure.
- Full Text:
- Date Issued: 2008
Spatial and temporal variations in metals in the sediment and water of selected Eastern Cape Estuaries, South Africa
- Authors: Orr, Kyla Kathleen
- Date: 2008
- Subjects: Marine sediments -- South Africa -- Eastern Cape , Metals -- South Africa -- Eastern Cape , Metals -- Environmental aspects , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology -- South Africa -- Eastern Cape , Estuarine sediments -- South Africa -- Eastern Cape , Water quality -- South Africa -- Eastern Cape , Water pollution -- South Africa -- Eastern Cape , Environmental toxicology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5769 , http://hdl.handle.net/10962/d1005457 , Marine sediments -- South Africa -- Eastern Cape , Metals -- South Africa -- Eastern Cape , Metals -- Environmental aspects , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology -- South Africa -- Eastern Cape , Estuarine sediments -- South Africa -- Eastern Cape , Water quality -- South Africa -- Eastern Cape , Water pollution -- South Africa -- Eastern Cape , Environmental toxicology -- South Africa -- Eastern Cape
- Description: The spatio-temporal patterns in concentrations of selected metals within the sediment (Cd, Co, Cu, Fe, Pb, Ni and Zn) and water (Cd and Pb) of three permanently open estuaries (Kariega, Kowie, Great Fish) and six temporary open-closed estuaries (Mpekweni, East Kleinemonde, West Kleinemonde, Riet, Kasouga, Boknes) were investigated. The concentrations of metals were influenced by size composition and total organic content of the sediments. Enrichment factors (EFs), using Fe as a reference element, and baseline linear regression models for metals vs. Fe were calculated to assess the extent of metal enrichment in the sediments. The mean concentrations of metals in the sediments(mg·kg⁻¹) showed ranges of 0.28 – 2.31 for Cd, 1.26 – 6.24 Co, 0.69 – 6.93 for Cu, 2119 – 14912 for Fe, 2.29 –14.01 for Ni, 4.81 – 22.20 for Pb and 5.77 – 21.75 for Zn. Mean normalized enrichment factors ranged between 0.75 – 6.19 for Cd, 0.53 – 2.71 for Co, 0.22 – 0.84 for Cu, 0.30 – 1.87 for Ni, 0.99 – 3.17 for Pb and 0.14 – 0.98 for Zn. All nine estuaries had average enrichment factors of greater than 1 for Cd. In general there was no enrichment of Cu and Zn in the sediments of any of the estuaries included in this study (EFs < 1). The Kariega, East Kleinemonde, West Kleinemonde, Riet and Great Fish Estuaries showed some degree of enrichment for Co (1 < EF < 4), Ni (1 < EF < 2) and Pb (1 < EF < 4), while the Mpekweni, Kasouga, Boknes and Kowie Estuaries were unenriched with these metals (EF < 1). Enrichment factors for Cd, Co and Pb typically followed the development gradient along the estuaries, suggesting anthropogenic enrichment. The concentrations of Cd and Pb in the water of the nine estuaries were also determined. The average concentrations of Cd and Pb in the water (μg·ℓ⁻¹) ranged between 0.05 – 3.32 and 0.75 – 34.13 respectively. On average the concentrations of Cd and Pb in the water of all the estuaries were below the South African recommended water quality guidelines for coastal marine waters. Variations in metal concentrations associated with changes in hydrology (wet vs. dry season) were determined in the water and sediment of the Kariega, East Kleinemonde and Riet Estuaries. Cobalt, Pb and Ni enrichment in the Kariega Estuary sediment was significantly higher during the dry season, and the mean concentrations of Pb and Cd in the water column were 19-fold and 66-fold higher in the dry season. The elevated concentration of metals during the dry season could be related to accumulation of diffuse pollution from human activities within the catchment area. Conversely, inflow of fresh water into the estuary had the net effect of reducing the concentration and enrichment of these metals within the Kariega Estuary due to scouring and outflow of estuarine water and sediment into the marine environment. The temporal variations in metal concentrations and enrichment factors were less pronounced in the temporary open-closed estuaries than the permanently open Kariega Estuary. The observed trend can probably be related to the low anthropogenic impact within the catchment areas of these systems, and the relatively smaller size of the catchments. Significant spatial variations existed in metal enrichment in the sediment of both the East Kleinemonde and Riet estuaries, with the highest degrees of enrichment occurring in the sediments from the marine environment and lower reaches.
- Full Text:
- Date Issued: 2008
- Authors: Orr, Kyla Kathleen
- Date: 2008
- Subjects: Marine sediments -- South Africa -- Eastern Cape , Metals -- South Africa -- Eastern Cape , Metals -- Environmental aspects , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology -- South Africa -- Eastern Cape , Estuarine sediments -- South Africa -- Eastern Cape , Water quality -- South Africa -- Eastern Cape , Water pollution -- South Africa -- Eastern Cape , Environmental toxicology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5769 , http://hdl.handle.net/10962/d1005457 , Marine sediments -- South Africa -- Eastern Cape , Metals -- South Africa -- Eastern Cape , Metals -- Environmental aspects , Estuaries -- South Africa -- Eastern Cape , Estuarine ecology -- South Africa -- Eastern Cape , Estuarine sediments -- South Africa -- Eastern Cape , Water quality -- South Africa -- Eastern Cape , Water pollution -- South Africa -- Eastern Cape , Environmental toxicology -- South Africa -- Eastern Cape
- Description: The spatio-temporal patterns in concentrations of selected metals within the sediment (Cd, Co, Cu, Fe, Pb, Ni and Zn) and water (Cd and Pb) of three permanently open estuaries (Kariega, Kowie, Great Fish) and six temporary open-closed estuaries (Mpekweni, East Kleinemonde, West Kleinemonde, Riet, Kasouga, Boknes) were investigated. The concentrations of metals were influenced by size composition and total organic content of the sediments. Enrichment factors (EFs), using Fe as a reference element, and baseline linear regression models for metals vs. Fe were calculated to assess the extent of metal enrichment in the sediments. The mean concentrations of metals in the sediments(mg·kg⁻¹) showed ranges of 0.28 – 2.31 for Cd, 1.26 – 6.24 Co, 0.69 – 6.93 for Cu, 2119 – 14912 for Fe, 2.29 –14.01 for Ni, 4.81 – 22.20 for Pb and 5.77 – 21.75 for Zn. Mean normalized enrichment factors ranged between 0.75 – 6.19 for Cd, 0.53 – 2.71 for Co, 0.22 – 0.84 for Cu, 0.30 – 1.87 for Ni, 0.99 – 3.17 for Pb and 0.14 – 0.98 for Zn. All nine estuaries had average enrichment factors of greater than 1 for Cd. In general there was no enrichment of Cu and Zn in the sediments of any of the estuaries included in this study (EFs < 1). The Kariega, East Kleinemonde, West Kleinemonde, Riet and Great Fish Estuaries showed some degree of enrichment for Co (1 < EF < 4), Ni (1 < EF < 2) and Pb (1 < EF < 4), while the Mpekweni, Kasouga, Boknes and Kowie Estuaries were unenriched with these metals (EF < 1). Enrichment factors for Cd, Co and Pb typically followed the development gradient along the estuaries, suggesting anthropogenic enrichment. The concentrations of Cd and Pb in the water of the nine estuaries were also determined. The average concentrations of Cd and Pb in the water (μg·ℓ⁻¹) ranged between 0.05 – 3.32 and 0.75 – 34.13 respectively. On average the concentrations of Cd and Pb in the water of all the estuaries were below the South African recommended water quality guidelines for coastal marine waters. Variations in metal concentrations associated with changes in hydrology (wet vs. dry season) were determined in the water and sediment of the Kariega, East Kleinemonde and Riet Estuaries. Cobalt, Pb and Ni enrichment in the Kariega Estuary sediment was significantly higher during the dry season, and the mean concentrations of Pb and Cd in the water column were 19-fold and 66-fold higher in the dry season. The elevated concentration of metals during the dry season could be related to accumulation of diffuse pollution from human activities within the catchment area. Conversely, inflow of fresh water into the estuary had the net effect of reducing the concentration and enrichment of these metals within the Kariega Estuary due to scouring and outflow of estuarine water and sediment into the marine environment. The temporal variations in metal concentrations and enrichment factors were less pronounced in the temporary open-closed estuaries than the permanently open Kariega Estuary. The observed trend can probably be related to the low anthropogenic impact within the catchment areas of these systems, and the relatively smaller size of the catchments. Significant spatial variations existed in metal enrichment in the sediment of both the East Kleinemonde and Riet estuaries, with the highest degrees of enrichment occurring in the sediments from the marine environment and lower reaches.
- Full Text:
- Date Issued: 2008
The feasibility of stock enhancement as a management tool for dusky kob (Argyrosomus japonicus) in South Africa
- Authors: Palmer, Ryan Michael
- Date: 2008
- Subjects: Argyrosomus -- South Africa , Argyrosomus -- Genetics , Fishery management -- South Africa , Fish stocking -- South Africa , Fisheries -- South Africa , Marine ecology -- South Africa , Fish culture -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5281 , http://hdl.handle.net/10962/d1005125 , Argyrosomus -- South Africa , Argyrosomus -- Genetics , Fishery management -- South Africa , Fish stocking -- South Africa , Fisheries -- South Africa , Marine ecology -- South Africa , Fish culture -- South Africa
- Description: The dusky kob, Argyrosomus japonicus, is a popular South African “line fish” whose stocks have dwindled to dangerously low levels of between 1% and 4.5% of pristine spawner biomass per recruit. A. japonicus stocks are currently managed by means of minimum size restrictions and daily bag limits, and as a result of the inability of these measures to facilitate the recovery of the species over a realistic time frame, the need for an alternative management plan has become apparent. Given the status of the stock and management regime, stock enhancement appears to be an appropriate option to be investigated. This study evaluates the feasibility of stock enhancement as a possible management tool to assist with the recovery of this important South African linefish species. By evaluating the genetic and ecological implications related to stock enhancement, identifying a suitable tagging method for post-release monitoring, and evaluating the economic feasibility of such a programme, any fatal flaws would become immediately apparent. This coupled with the required framework for the development of a management plan for stock enhancement of A. japonicus provides direction further research and actions required in order to utilise stock enhancement as a management tool. Due to the nature of stock enhancement, there are several ecological and genetic issues that arise from such a programme. These issues were reviewed and the issues that were relevant to stock enhancement of A. japonicus identified. Ecological concerns that arose included those of competition, disease and seed quality, while genetic issues were concerned mainly in the possible loss of genetic variability and consequent reduction in fitness of the stock. Fortunately the technology exists to evaluate the effects and likelihood of these problems occurring as well as to minimise the likelihood of them occurring. By taking a scientific approach to stock enhancement, hatchery management, and release strategies can be manipulated in such a way as to minimise any negative effects that may be caused. Both ecological and genetic effects of stocking indicate a need for post-release monitoring of stock enhancement programmes. Stock enhancement requires a post-release monitoring programme, which in turn relies on an ability to distinguish between hatchery reared and wild fish. A study was conducted to evaluate the suitability of coded wire tags (CWT), visual implant fluorescent elastomers (VIFE), and oxytetracycline (OTC) as a means of distinguishing between hatchery reared and wild A. japonicus, for the purpose of a post-release monitoring programme. OTC appeared to be the most suitable as it produced 100% retention over a five month period compared to 62% and 61% for VIFE and CWT respectively. OTC is therefore suggested as a tagging method for the purpose of post-release monitoring of the stock enhancement of A. japonicus. To evaluate a possible funding option for stock enhancement of A. japonicus in South Africa, a willingness-to-pay survey, based on a “user pays” approach using recreational fishing permits as a vehicle for payment, included 102 recreational anglers in the Plettenberg Bay area. The survey showed that generally anglers were willing to pay more than the current amount for the recreational fishing permit. This promising result, coupled with the fact that there are approximately 450 000 recreational anglers leads to the belief that there is potential for a substantial increase in the funds generated for the Marine Living Resources Fund through recreational anglers. Stock enhancement should not be ruled out on the basis of economic feasibility yet as there is potential for it to be sustained by the users of the resource. An A. japonicus juvenile production costing model was created taking into account setup and running costs of a hatchery for A. japonicus, based on known parameters from existing facilities, and adjusting them to meet the requirements of a stock enhancement facility. Estimates varied according to the number and size of fish for release (values which can only be decided upon after further research), with setup estimated to be between R 10 000 000 and R 30 000 000 and annual running costs between R 2 400 000 and R 6 700 000 annually. These figures were dependant on the size and number of fish being produced, with production ranging between 100 000 and 5 000 000 fish of between 50 mm and 150 mm, and a broodstock of 150 individuals. Given the need for alternative management of A. japonicus in South Africa and the lack of evidence to suggest that it is an unfeasible option, this project has found no reason why further investigation into the use of stock enhancement for the management of A. japonicus should not proceed further provided the fishery is shown to be recruit limited. The technology and ability to overcome possible ecological and genetic problems exists, a suitable means of tagging for post-release monitoring exists, as does a realistic funding option. There is a substantial amount of research that must be done prior to stocking, for which a base framework is provided.
- Full Text:
- Date Issued: 2008
- Authors: Palmer, Ryan Michael
- Date: 2008
- Subjects: Argyrosomus -- South Africa , Argyrosomus -- Genetics , Fishery management -- South Africa , Fish stocking -- South Africa , Fisheries -- South Africa , Marine ecology -- South Africa , Fish culture -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5281 , http://hdl.handle.net/10962/d1005125 , Argyrosomus -- South Africa , Argyrosomus -- Genetics , Fishery management -- South Africa , Fish stocking -- South Africa , Fisheries -- South Africa , Marine ecology -- South Africa , Fish culture -- South Africa
- Description: The dusky kob, Argyrosomus japonicus, is a popular South African “line fish” whose stocks have dwindled to dangerously low levels of between 1% and 4.5% of pristine spawner biomass per recruit. A. japonicus stocks are currently managed by means of minimum size restrictions and daily bag limits, and as a result of the inability of these measures to facilitate the recovery of the species over a realistic time frame, the need for an alternative management plan has become apparent. Given the status of the stock and management regime, stock enhancement appears to be an appropriate option to be investigated. This study evaluates the feasibility of stock enhancement as a possible management tool to assist with the recovery of this important South African linefish species. By evaluating the genetic and ecological implications related to stock enhancement, identifying a suitable tagging method for post-release monitoring, and evaluating the economic feasibility of such a programme, any fatal flaws would become immediately apparent. This coupled with the required framework for the development of a management plan for stock enhancement of A. japonicus provides direction further research and actions required in order to utilise stock enhancement as a management tool. Due to the nature of stock enhancement, there are several ecological and genetic issues that arise from such a programme. These issues were reviewed and the issues that were relevant to stock enhancement of A. japonicus identified. Ecological concerns that arose included those of competition, disease and seed quality, while genetic issues were concerned mainly in the possible loss of genetic variability and consequent reduction in fitness of the stock. Fortunately the technology exists to evaluate the effects and likelihood of these problems occurring as well as to minimise the likelihood of them occurring. By taking a scientific approach to stock enhancement, hatchery management, and release strategies can be manipulated in such a way as to minimise any negative effects that may be caused. Both ecological and genetic effects of stocking indicate a need for post-release monitoring of stock enhancement programmes. Stock enhancement requires a post-release monitoring programme, which in turn relies on an ability to distinguish between hatchery reared and wild fish. A study was conducted to evaluate the suitability of coded wire tags (CWT), visual implant fluorescent elastomers (VIFE), and oxytetracycline (OTC) as a means of distinguishing between hatchery reared and wild A. japonicus, for the purpose of a post-release monitoring programme. OTC appeared to be the most suitable as it produced 100% retention over a five month period compared to 62% and 61% for VIFE and CWT respectively. OTC is therefore suggested as a tagging method for the purpose of post-release monitoring of the stock enhancement of A. japonicus. To evaluate a possible funding option for stock enhancement of A. japonicus in South Africa, a willingness-to-pay survey, based on a “user pays” approach using recreational fishing permits as a vehicle for payment, included 102 recreational anglers in the Plettenberg Bay area. The survey showed that generally anglers were willing to pay more than the current amount for the recreational fishing permit. This promising result, coupled with the fact that there are approximately 450 000 recreational anglers leads to the belief that there is potential for a substantial increase in the funds generated for the Marine Living Resources Fund through recreational anglers. Stock enhancement should not be ruled out on the basis of economic feasibility yet as there is potential for it to be sustained by the users of the resource. An A. japonicus juvenile production costing model was created taking into account setup and running costs of a hatchery for A. japonicus, based on known parameters from existing facilities, and adjusting them to meet the requirements of a stock enhancement facility. Estimates varied according to the number and size of fish for release (values which can only be decided upon after further research), with setup estimated to be between R 10 000 000 and R 30 000 000 and annual running costs between R 2 400 000 and R 6 700 000 annually. These figures were dependant on the size and number of fish being produced, with production ranging between 100 000 and 5 000 000 fish of between 50 mm and 150 mm, and a broodstock of 150 individuals. Given the need for alternative management of A. japonicus in South Africa and the lack of evidence to suggest that it is an unfeasible option, this project has found no reason why further investigation into the use of stock enhancement for the management of A. japonicus should not proceed further provided the fishery is shown to be recruit limited. The technology and ability to overcome possible ecological and genetic problems exists, a suitable means of tagging for post-release monitoring exists, as does a realistic funding option. There is a substantial amount of research that must be done prior to stocking, for which a base framework is provided.
- Full Text:
- Date Issued: 2008
Larval fish dynamics in the shallow nearshore of Eastern Algoa Bay with particular emphasis on the effects of currents and swimming abilities on dispersal
- Authors: Pattrick, Paula
- Date: 2008
- Subjects: Fishes -- Larvae -- Eastern Cape -- Algoa Bay , Marine parks and reserves -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Ecology -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Dispersal -- Eastern Cape -- Algoa Bay , Fishes -- Development -- Eastern Cape -- Algoa Bay
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5294 , http://hdl.handle.net/10962/d1005139 , Fishes -- Larvae -- Eastern Cape -- Algoa Bay , Marine parks and reserves -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Ecology -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Dispersal -- Eastern Cape -- Algoa Bay , Fishes -- Development -- Eastern Cape -- Algoa Bay
- Description: The larval fish assemblage in the shallow, nearshore region of a proposed marine protected area (MPA) in eastern Algoa Bay, temperate South Africa was investigated. Current velocities and direction and the swimming abilities of late-stage larvae were further assessed to determine potential larval movement to and from the MPA. In total, 6045 larval fishes were collected along two depth contours (~5m and ~15m) in the shallow nearshore of eastern Algoa Bay using stepped-oblique bongo net tows, twice per season for two years (March 2005 – January 2007). These larvae represented 32 families and 78 species. The Gobiidae, Cynoglossidae, Clupeidae, Engraulidae and Sparidae were the dominant fish families. Catches varied significantly between seasons peaking in spring with a mean of 64 larvae/100m3. Preflexion stage larvae dominated catches (75%). All developmental stages of Diplodus capensis, Engraulis capensis, Heteromycteris capensis, Sardinops sagax and Pomadasys species were found in the study area. It appears that these species use the shallow nearshore as a nursery area. Analysis of 12 months (May 2006 – May 2007) data from a bottom-moored Acoustic Doppler Current Profiler within the study area showed that offshore south eastward (39%) and onshore north westward currents (33%) dominated. The south westward current (15%) and north eastward current (12%) occurred less frequently. Current velocity decreased with depth in the nearshore, with a mean velocity of ~29 cms⁻¹ recorded at a depth of 4 m and a mean velocity of ~11 cms⁻¹ recorded at a depth of 14 m. Understanding the dispersal and movement of marine fish larvae in coastal habitats requires knowledge of active swimming abilities. The critical speed and endurance swimming of late stage larvae of two common inshore species occurring in the study area, Diplodus capensis and Sarpa salpa (Family Sparidae), were measured in a laboratory swimming chamber. The mean U-crit value for D. capensis (18.6 cms⁻¹) was similar to that of S. salpa (18.0 cms⁻¹), whereas mean endurance (km swum) was greater in S. salpa (8.4 km) than D. capensis (5.9 km). These swimming abilities exceed the average current velocities observed in the shallow nearshore providing larvae with the ability to greatly alter their passive dispersal trajectories and ultimately influence their distribution in the nearshore.
- Full Text:
- Date Issued: 2008
- Authors: Pattrick, Paula
- Date: 2008
- Subjects: Fishes -- Larvae -- Eastern Cape -- Algoa Bay , Marine parks and reserves -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Ecology -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Dispersal -- Eastern Cape -- Algoa Bay , Fishes -- Development -- Eastern Cape -- Algoa Bay
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5294 , http://hdl.handle.net/10962/d1005139 , Fishes -- Larvae -- Eastern Cape -- Algoa Bay , Marine parks and reserves -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Ecology -- Eastern Cape -- Algoa Bay , Fishes -- Larvae -- Dispersal -- Eastern Cape -- Algoa Bay , Fishes -- Development -- Eastern Cape -- Algoa Bay
- Description: The larval fish assemblage in the shallow, nearshore region of a proposed marine protected area (MPA) in eastern Algoa Bay, temperate South Africa was investigated. Current velocities and direction and the swimming abilities of late-stage larvae were further assessed to determine potential larval movement to and from the MPA. In total, 6045 larval fishes were collected along two depth contours (~5m and ~15m) in the shallow nearshore of eastern Algoa Bay using stepped-oblique bongo net tows, twice per season for two years (March 2005 – January 2007). These larvae represented 32 families and 78 species. The Gobiidae, Cynoglossidae, Clupeidae, Engraulidae and Sparidae were the dominant fish families. Catches varied significantly between seasons peaking in spring with a mean of 64 larvae/100m3. Preflexion stage larvae dominated catches (75%). All developmental stages of Diplodus capensis, Engraulis capensis, Heteromycteris capensis, Sardinops sagax and Pomadasys species were found in the study area. It appears that these species use the shallow nearshore as a nursery area. Analysis of 12 months (May 2006 – May 2007) data from a bottom-moored Acoustic Doppler Current Profiler within the study area showed that offshore south eastward (39%) and onshore north westward currents (33%) dominated. The south westward current (15%) and north eastward current (12%) occurred less frequently. Current velocity decreased with depth in the nearshore, with a mean velocity of ~29 cms⁻¹ recorded at a depth of 4 m and a mean velocity of ~11 cms⁻¹ recorded at a depth of 14 m. Understanding the dispersal and movement of marine fish larvae in coastal habitats requires knowledge of active swimming abilities. The critical speed and endurance swimming of late stage larvae of two common inshore species occurring in the study area, Diplodus capensis and Sarpa salpa (Family Sparidae), were measured in a laboratory swimming chamber. The mean U-crit value for D. capensis (18.6 cms⁻¹) was similar to that of S. salpa (18.0 cms⁻¹), whereas mean endurance (km swum) was greater in S. salpa (8.4 km) than D. capensis (5.9 km). These swimming abilities exceed the average current velocities observed in the shallow nearshore providing larvae with the ability to greatly alter their passive dispersal trajectories and ultimately influence their distribution in the nearshore.
- Full Text:
- Date Issued: 2008
Characterization of polarization dependent loss in optical fibres and optical components in the presence of polarization mode dispersion
- Authors: Pelaelo, Gaoboelwe
- Date: 2008
- Subjects: Fiber optics , Polarization (Light)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10528 , http://hdl.handle.net/10948/695 , Fiber optics , Polarization (Light)
- Description: In this study, the Jones matrix eigenanalysis (JME), optical spectrum analyzer (OSA) and polarization scrambling methods were used to investigate polarization dependent loss (PDL) in the presence of polarization mode dispersion (PMD) in optical components and fibres. The PDL measurements were conducted both in the laboratory and in the field. For field measurements, a buried link (28.8 km) and an aerial fibre (7.1 km) were extensively studied. The findings obtained from these studies are very important for network operators who must assess the impact of PDL on the network reliability. The three different PDL measurement methods (JME, OSA and polarization scrambling) were compared and their PDL values were found to agree very well at the selected wavelength of 1550 nm. Concatenation of PDL components showed that as expected, PDL increase as the number of PDL components were added. The interactions between PMD and PDL measurements were analyzed. A PMD/PDL emulator was constructed. We observed that PMD decreased while PDL increased. The PMD decrease was a result of the PMD vector cancellation enhanced by the randomly distributed mode coupling angles while PDL increase was a result of each PM fibre segments contributing to the overall global PDL. It was observed that the presence of PMD in a link containing PDL, results in PDL being wavelength dependent and this resulted in the extraction of the PMD information from the PDL data. PDL was found to be Maxwellian distributed when considering low values of PMD. High PMD values resulted in the PDL distribution deviating from Maxwellian. Long-term PDL and PMD (average DGD) measurements indicated that the PDL and PMD varied slowly with time and wavelength for both the laboratory and field measurements. It was observed that the BER increase as both PDL and PMD increased for simulated optical link.
- Full Text:
- Date Issued: 2008
- Authors: Pelaelo, Gaoboelwe
- Date: 2008
- Subjects: Fiber optics , Polarization (Light)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10528 , http://hdl.handle.net/10948/695 , Fiber optics , Polarization (Light)
- Description: In this study, the Jones matrix eigenanalysis (JME), optical spectrum analyzer (OSA) and polarization scrambling methods were used to investigate polarization dependent loss (PDL) in the presence of polarization mode dispersion (PMD) in optical components and fibres. The PDL measurements were conducted both in the laboratory and in the field. For field measurements, a buried link (28.8 km) and an aerial fibre (7.1 km) were extensively studied. The findings obtained from these studies are very important for network operators who must assess the impact of PDL on the network reliability. The three different PDL measurement methods (JME, OSA and polarization scrambling) were compared and their PDL values were found to agree very well at the selected wavelength of 1550 nm. Concatenation of PDL components showed that as expected, PDL increase as the number of PDL components were added. The interactions between PMD and PDL measurements were analyzed. A PMD/PDL emulator was constructed. We observed that PMD decreased while PDL increased. The PMD decrease was a result of the PMD vector cancellation enhanced by the randomly distributed mode coupling angles while PDL increase was a result of each PM fibre segments contributing to the overall global PDL. It was observed that the presence of PMD in a link containing PDL, results in PDL being wavelength dependent and this resulted in the extraction of the PMD information from the PDL data. PDL was found to be Maxwellian distributed when considering low values of PMD. High PMD values resulted in the PDL distribution deviating from Maxwellian. Long-term PDL and PMD (average DGD) measurements indicated that the PDL and PMD varied slowly with time and wavelength for both the laboratory and field measurements. It was observed that the BER increase as both PDL and PMD increased for simulated optical link.
- Full Text:
- Date Issued: 2008
Water, salt and nutrient budgets of the Swartkops and Sundays river estuaries using the loicz biogeochemical budgeting protocol
- Authors: Potgieter, Matthys Johannes
- Date: 2008
- Subjects: Estuarine oceanography , Groundwater flow -- South Africa -- Swartkops River Estuary
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10705 , http://hdl.handle.net/10948/903 , Estuarine oceanography , Groundwater flow -- South Africa -- Swartkops River Estuary
- Description: The Swartkops River and Sundays River Estuaries are different in terms of morphology and the level of human impact. Budget models of DIP and DIN were constructed for each estuary at different riverine flow rates, using the Land-Ocean Interactions in the Coastal Zone (LOICZ) protocol. Nutrient dynamics in the estuaries were investigated using nutrient data and the results of the models. The Swartkops River Estuary acted as a sink of DIP and DIN, while being net heterotrophic. The Sundays River Estuary acted as a source of DIP and DIN, while being net autotrophic. Both systems were net denitrifying. The Swartkops River Estuary shows greater anthropogenic impacts in terms of nutrient loads than the Sundays River Estuary. A shift in nutrient concentration trends and system properties occurred between conditions of low and high riverine flow rates. The Swartkops River and Sundays River Estuaries were shown to be ‘outwellers’ of DIN and DIP, while having an important influence on the ratio of DIN:DIP exported to the adjacent ocean. Comparisons with other estuaries suggested that riverine flow into estuaries in the Eastern Cape region may display natural DIN:DIP ratios which are lower than the global average for “pristine” systems. Such ratios would be decreased further by increased water extraction for human activities.
- Full Text:
- Date Issued: 2008
- Authors: Potgieter, Matthys Johannes
- Date: 2008
- Subjects: Estuarine oceanography , Groundwater flow -- South Africa -- Swartkops River Estuary
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10705 , http://hdl.handle.net/10948/903 , Estuarine oceanography , Groundwater flow -- South Africa -- Swartkops River Estuary
- Description: The Swartkops River and Sundays River Estuaries are different in terms of morphology and the level of human impact. Budget models of DIP and DIN were constructed for each estuary at different riverine flow rates, using the Land-Ocean Interactions in the Coastal Zone (LOICZ) protocol. Nutrient dynamics in the estuaries were investigated using nutrient data and the results of the models. The Swartkops River Estuary acted as a sink of DIP and DIN, while being net heterotrophic. The Sundays River Estuary acted as a source of DIP and DIN, while being net autotrophic. Both systems were net denitrifying. The Swartkops River Estuary shows greater anthropogenic impacts in terms of nutrient loads than the Sundays River Estuary. A shift in nutrient concentration trends and system properties occurred between conditions of low and high riverine flow rates. The Swartkops River and Sundays River Estuaries were shown to be ‘outwellers’ of DIN and DIP, while having an important influence on the ratio of DIN:DIP exported to the adjacent ocean. Comparisons with other estuaries suggested that riverine flow into estuaries in the Eastern Cape region may display natural DIN:DIP ratios which are lower than the global average for “pristine” systems. Such ratios would be decreased further by increased water extraction for human activities.
- Full Text:
- Date Issued: 2008
Aspects of the breeding biology of the African penguin on Bird Island, Algoa Bay
- Authors: Ralph, Mark Shaun
- Date: 2008
- Subjects: Penguins -- South Africa -- Conservation , Penguins -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10716 , http://hdl.handle.net/10948/840 , Penguins -- South Africa -- Conservation , Penguins -- South Africa
- Description: It is important to the survival of the Africa Penguin (Spheniscus demersus) population that breeding at the nest site is successful and that large numbers of chicks are fledged into the breeding population. Nest distribution on Bird Island is not random and locality preferences for breeding exist. Although it seems that sufficient area exists on Bird Island for penguin nests, it can hardly be considered as suitable to optimise breeding. During prolonged heat conditions, breeders relocated to nest sites that were sheltered. Nests that were below ground in burrows was the only habitat that did not suffer nest desertion whilst all the other habitat types (including those that were sheltered) experienced 2-3 fold declines in nest numbers. Nests density and the selection of suitable nest sites are significantly influenced by the stage of breeding that the majority of birds are in, yet nests that are shaded, well-ventilated and protected seem to be the most preferred sites for breeding. Adults that attempt to breed are considered then to be in a healthy condition and will usually lay a double clutch (Randell 1983). The frequency of double clutches being laid during the peak breeding attempt was significantly higher compared to the replacement one. Breeding failure was fairly similar to breeding success during the incubation stage for nests with double clutches however, was substantially higher in single clutches. The growth rate of chicks was best fit to the von Bertalanffy growth curve in 90 percent of the cases. The overall growth rate of chicks from double broods was faster than from single broods, however was not significant. A-chicks maitain a high growth rate until they fledged. Yet, the sibling B-chick recorded the lowest growth rate of the successfully fledged chicks and up to until day 30 recorded a similar weight to those chicks that failed to fledge. Contrary to findings of Randall (1983), chicks from single broods delayed fledging, recorded lowest overall growth rates and experienced the greatest weight loss of all groups, yet fledged successfully. In order for chicks to fledge successfully, they needed to obtain a weight of 1060 g before day 30.5 in their growth cycles to avoid death due to startvation later on. Single chicks that are raised from a double cluth, fledged more other than chicks raised from a single clutch. Unfit or ill-adapted breeders that are marginal in the capabilities of raising offspring, already manifest in a small clutch size and offspring unable to obtain adequate weights during the initial stages of growth.
- Full Text:
- Date Issued: 2008
- Authors: Ralph, Mark Shaun
- Date: 2008
- Subjects: Penguins -- South Africa -- Conservation , Penguins -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10716 , http://hdl.handle.net/10948/840 , Penguins -- South Africa -- Conservation , Penguins -- South Africa
- Description: It is important to the survival of the Africa Penguin (Spheniscus demersus) population that breeding at the nest site is successful and that large numbers of chicks are fledged into the breeding population. Nest distribution on Bird Island is not random and locality preferences for breeding exist. Although it seems that sufficient area exists on Bird Island for penguin nests, it can hardly be considered as suitable to optimise breeding. During prolonged heat conditions, breeders relocated to nest sites that were sheltered. Nests that were below ground in burrows was the only habitat that did not suffer nest desertion whilst all the other habitat types (including those that were sheltered) experienced 2-3 fold declines in nest numbers. Nests density and the selection of suitable nest sites are significantly influenced by the stage of breeding that the majority of birds are in, yet nests that are shaded, well-ventilated and protected seem to be the most preferred sites for breeding. Adults that attempt to breed are considered then to be in a healthy condition and will usually lay a double clutch (Randell 1983). The frequency of double clutches being laid during the peak breeding attempt was significantly higher compared to the replacement one. Breeding failure was fairly similar to breeding success during the incubation stage for nests with double clutches however, was substantially higher in single clutches. The growth rate of chicks was best fit to the von Bertalanffy growth curve in 90 percent of the cases. The overall growth rate of chicks from double broods was faster than from single broods, however was not significant. A-chicks maitain a high growth rate until they fledged. Yet, the sibling B-chick recorded the lowest growth rate of the successfully fledged chicks and up to until day 30 recorded a similar weight to those chicks that failed to fledge. Contrary to findings of Randall (1983), chicks from single broods delayed fledging, recorded lowest overall growth rates and experienced the greatest weight loss of all groups, yet fledged successfully. In order for chicks to fledge successfully, they needed to obtain a weight of 1060 g before day 30.5 in their growth cycles to avoid death due to startvation later on. Single chicks that are raised from a double cluth, fledged more other than chicks raised from a single clutch. Unfit or ill-adapted breeders that are marginal in the capabilities of raising offspring, already manifest in a small clutch size and offspring unable to obtain adequate weights during the initial stages of growth.
- Full Text:
- Date Issued: 2008
Studies towards the synthesis of novel, coumarin-based HIV-1 protease inhibitors
- Authors: Rashamuse, Thompho Jason
- Date: 2008
- Subjects: Coumarins , Protease Inhibitors , HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Heterocyclic compounds -- Derivatives
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4359 , http://hdl.handle.net/10962/d1005024 , Coumarins , Protease Inhibitors , HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Heterocyclic compounds -- Derivatives
- Description: A series of the Baylis-Hillman adducts have been obtained by reacting protected O-benzylated and unprotected substituted salicylaldehydes with methyl acrylate or tertbutyl acrylate, respectively, using DABCO as catalyst. Treatment of the Baylis-Hillman adducts with HCl in a mixture of acetic acid and acetic anhydride afforded the corresponding 3-(chloromethyl)coumarin derivatives with yields of up to 94%. Similar use of HI afforded the corresponding 3-(iodomethyl)coumarins but, depending on the reaction time, the reduced 3-methyl analogues could also be obtained. Arbuzov reactions of the 3-(halomethyl)coumarin derivatives have been undertaken to afford 4-phosphorylated and 1’-phosphorylated derivatives, regioselectivity being dependent on the halide-leaving group. The 3-(chloromethyl)coumarin derivatives have been subjected to nucleophilic (SN) attack by benzylamine to give the corresponding 3- [(benzylamino)methyl]coumarin derivatives in yields of up to 74%. Further treatment of the 3-[(benzylamino)methyl]coumarin derivatives with chloroacetyl chloride afforded the chloroacetamide derivatives, which exhibit hindered rotation about the amine C(O)-N bond. The acetamide derivatives have also been subjected to Arbuzov reaction conditions to afford the phosphorylated derivatives in yields of up to 86%. In a preliminary modelling study, hydrolysed analogues of the synthesized phosphorylated derivatives have been docked into the active site of the HIV-1 protease enzyme using the Cerius-2 Ligandfit software module to provide an insight into potential receptor-ligand hydrogen bonding interactions.
- Full Text:
- Date Issued: 2008
- Authors: Rashamuse, Thompho Jason
- Date: 2008
- Subjects: Coumarins , Protease Inhibitors , HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Heterocyclic compounds -- Derivatives
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4359 , http://hdl.handle.net/10962/d1005024 , Coumarins , Protease Inhibitors , HIV infections -- Treatment , HIV (Viruses) , AIDS (Disease) -- Treatment , Heterocyclic compounds -- Derivatives
- Description: A series of the Baylis-Hillman adducts have been obtained by reacting protected O-benzylated and unprotected substituted salicylaldehydes with methyl acrylate or tertbutyl acrylate, respectively, using DABCO as catalyst. Treatment of the Baylis-Hillman adducts with HCl in a mixture of acetic acid and acetic anhydride afforded the corresponding 3-(chloromethyl)coumarin derivatives with yields of up to 94%. Similar use of HI afforded the corresponding 3-(iodomethyl)coumarins but, depending on the reaction time, the reduced 3-methyl analogues could also be obtained. Arbuzov reactions of the 3-(halomethyl)coumarin derivatives have been undertaken to afford 4-phosphorylated and 1’-phosphorylated derivatives, regioselectivity being dependent on the halide-leaving group. The 3-(chloromethyl)coumarin derivatives have been subjected to nucleophilic (SN) attack by benzylamine to give the corresponding 3- [(benzylamino)methyl]coumarin derivatives in yields of up to 74%. Further treatment of the 3-[(benzylamino)methyl]coumarin derivatives with chloroacetyl chloride afforded the chloroacetamide derivatives, which exhibit hindered rotation about the amine C(O)-N bond. The acetamide derivatives have also been subjected to Arbuzov reaction conditions to afford the phosphorylated derivatives in yields of up to 86%. In a preliminary modelling study, hydrolysed analogues of the synthesized phosphorylated derivatives have been docked into the active site of the HIV-1 protease enzyme using the Cerius-2 Ligandfit software module to provide an insight into potential receptor-ligand hydrogen bonding interactions.
- Full Text:
- Date Issued: 2008
A preliminary investigation into the use of biomarkers and a fish community index to assess estuarine health in selected Eastern Cape estuaries
- Authors: Richardson, Naomi
- Date: 2008
- Subjects: Fish communities -- South Africa -- Eastern Cape Estuarine fishes -- South Africa -- Eastern Cape Estuarine health -- South Africa -- Eastern Cape Estuaries -- South Africa -- Eastern Cape -- Management Coastal zone management -- South Africa -- Eastern Cape Environmental monitoring -- South Africa -- Eastern Cape Estuarine ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5348 , http://hdl.handle.net/10962/d1007480
- Description: The aims of this study were to determine the potential use of biomarkers at multiple levels of biological organisation together with a fish community bioindicator to assess the estuarine health status of three temporarily open/closed estuaries. The estuaries investigated were the East Kleinemonde (EK), Old Woman's (OW) and Mtana (MTN), all of which are situated in the Eastern Cape Province. Three biomarkers, the acetylcholinesterase (AChE) assay, lipid peroxidation (LPx) assay, liver histopathology and a condition factor were used to determine sub-organism health and one bioindicator, the Estuarine Fish Community Index (EFCI), was used as a bioindicator of community health. The estuarine-dependent marine species Rhabdosargus holubi was selected as an indicator species for the sub-organism level analyses. The results from the community analyses indicated that the EK and OW estuaries were in 'good' condition, while the MTN was found to be in 'moderate' condition. Histological analyses revealed that R. holubi from all three estuaries showed signs of pathological changes to the liver, with the fish from the MTN eliciting the highest occurrence of these changes. The LPx assay found that R. holubi from both the OW and MTN showed signs of oxidative damage in the liver tissue, but those from the EK did not appear to be affected. The AChE assay showed that only the fish from the OW had been affected by anticholinesterase compounds. A laboratory study was undertaken using R. holubi as a positive control for the AChE and LPx assay. The fish were exposed to 3 μg/L chlorpyrifos, a known cholinesterase inhibitor, for six hours and their tissues were examined for changes to LPx levels and AChE activities. AChE activity was significantly inhibited (Mann Whitney U test, Z = 3.65, n = 38, P < 0.001) by the exposure, but LPx levels were not significantly affected. A composite index incorporating the biomarkers at different biological levels of organisation was developed. The index was designed to assist managers and scientists to determine whether the ichthyofauna of a system was being affected by environmental stressors and what management interventions could be undertaken to ameliorate the water quality in an estuary. The index was applied to the three estuaries investigated during the present study and both the OW and MTN were assessed to be in need of immediate management intervention. The fish in the OW were found to be stressed at all the sub-organism levels measured and the reason for this was hypothesised to be as a result of golf course activities in this adjacent estuary. A number of management actions are proposed to reduce the sub-organism stress observed in the fish from the OW. The livers of fish from the MTN were shown to be under stress; however the causative agent of this stress was unknown because there is no formal development in the MTN catchment. However, a possible contaminant source is proposed and management interventions to alleviate the stress on the biota of the MTN are suggested. The EK does not require immediate management intervention, however, continuous routine monitoring is recommended to ensure that conditions do not deteriorate. Shortcomings of the index were outlined and a number of suggestions were made in terms of other measures of biological health which could be incorporated into the index.
- Full Text:
- Date Issued: 2008
- Authors: Richardson, Naomi
- Date: 2008
- Subjects: Fish communities -- South Africa -- Eastern Cape Estuarine fishes -- South Africa -- Eastern Cape Estuarine health -- South Africa -- Eastern Cape Estuaries -- South Africa -- Eastern Cape -- Management Coastal zone management -- South Africa -- Eastern Cape Environmental monitoring -- South Africa -- Eastern Cape Estuarine ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5348 , http://hdl.handle.net/10962/d1007480
- Description: The aims of this study were to determine the potential use of biomarkers at multiple levels of biological organisation together with a fish community bioindicator to assess the estuarine health status of three temporarily open/closed estuaries. The estuaries investigated were the East Kleinemonde (EK), Old Woman's (OW) and Mtana (MTN), all of which are situated in the Eastern Cape Province. Three biomarkers, the acetylcholinesterase (AChE) assay, lipid peroxidation (LPx) assay, liver histopathology and a condition factor were used to determine sub-organism health and one bioindicator, the Estuarine Fish Community Index (EFCI), was used as a bioindicator of community health. The estuarine-dependent marine species Rhabdosargus holubi was selected as an indicator species for the sub-organism level analyses. The results from the community analyses indicated that the EK and OW estuaries were in 'good' condition, while the MTN was found to be in 'moderate' condition. Histological analyses revealed that R. holubi from all three estuaries showed signs of pathological changes to the liver, with the fish from the MTN eliciting the highest occurrence of these changes. The LPx assay found that R. holubi from both the OW and MTN showed signs of oxidative damage in the liver tissue, but those from the EK did not appear to be affected. The AChE assay showed that only the fish from the OW had been affected by anticholinesterase compounds. A laboratory study was undertaken using R. holubi as a positive control for the AChE and LPx assay. The fish were exposed to 3 μg/L chlorpyrifos, a known cholinesterase inhibitor, for six hours and their tissues were examined for changes to LPx levels and AChE activities. AChE activity was significantly inhibited (Mann Whitney U test, Z = 3.65, n = 38, P < 0.001) by the exposure, but LPx levels were not significantly affected. A composite index incorporating the biomarkers at different biological levels of organisation was developed. The index was designed to assist managers and scientists to determine whether the ichthyofauna of a system was being affected by environmental stressors and what management interventions could be undertaken to ameliorate the water quality in an estuary. The index was applied to the three estuaries investigated during the present study and both the OW and MTN were assessed to be in need of immediate management intervention. The fish in the OW were found to be stressed at all the sub-organism levels measured and the reason for this was hypothesised to be as a result of golf course activities in this adjacent estuary. A number of management actions are proposed to reduce the sub-organism stress observed in the fish from the OW. The livers of fish from the MTN were shown to be under stress; however the causative agent of this stress was unknown because there is no formal development in the MTN catchment. However, a possible contaminant source is proposed and management interventions to alleviate the stress on the biota of the MTN are suggested. The EK does not require immediate management intervention, however, continuous routine monitoring is recommended to ensure that conditions do not deteriorate. Shortcomings of the index were outlined and a number of suggestions were made in terms of other measures of biological health which could be incorporated into the index.
- Full Text:
- Date Issued: 2008
A method for imputing economic value to ecological goods and services provided by the Knysna River
- Authors: Saunders, James Woodward
- Date: 2008
- Subjects: Ecology -- South Africa -- Knysna Fishery management -- South Africa -- Knysna Water-supply -- South Africa -- Knysna Knysna Lagoon (South Africa) Knysna (South Africa) -- Economic conditions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:773 , http://hdl.handle.net/10962/d1003894
- Description: The purpose of this thesis was to develop a method by which economic value can be imputed from an economic activity to a non-market ecological function or service which contributes to that economic activity. The Knysna River in South Africa was chosen as the ecological function which supported three economic activities from which value was to be imputed; these were the Knysna Municipal Water Supply, Fish Production in the Knysna Estuary and Production of Indigenous Forest within the Knysna Catchment. Three underlying assumptions and two functional operations were required in order to implement the suggested method. The underlying assumptions were: - The ecological and economic activities considered are within a single catchment. - The allocation of value imputed for a specific economic activity to the ecological function or service under consideration (in this case the Knysna River) is proportional to the total contribution of ecological functions or services contributed to the economic activity. - The valuation of the economic activity for the purposes of obtaining a price-quantity point on a demand function is to be full cost pricing with no producer surplus. The two functional requirements were: - Diagram or map the linkages between an economic activity and the supporting ecological functions. - Determine the consumer surplus related to an incremental change in quantity under a demand function where the original price and quantity are known. A value from each of the economic activities was imputed to the Knysna River. However, the method was not tested. Nonetheless applying the equations and collecting the required data allowed several methodological needs to be clearly pointed out. The most acute deficiency was difficulty in obtaining secondary data from governmental agencies, commercial representatives and existing published academic research to ensure a robust price. Also, scientific information was not sufficiently available for allocating ecological contributions to the economic activities. Even with the shortage of credible data the method appears to allow non-market ecological functions to be valued in context of an existing economic system.
- Full Text:
- Date Issued: 2008
- Authors: Saunders, James Woodward
- Date: 2008
- Subjects: Ecology -- South Africa -- Knysna Fishery management -- South Africa -- Knysna Water-supply -- South Africa -- Knysna Knysna Lagoon (South Africa) Knysna (South Africa) -- Economic conditions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:773 , http://hdl.handle.net/10962/d1003894
- Description: The purpose of this thesis was to develop a method by which economic value can be imputed from an economic activity to a non-market ecological function or service which contributes to that economic activity. The Knysna River in South Africa was chosen as the ecological function which supported three economic activities from which value was to be imputed; these were the Knysna Municipal Water Supply, Fish Production in the Knysna Estuary and Production of Indigenous Forest within the Knysna Catchment. Three underlying assumptions and two functional operations were required in order to implement the suggested method. The underlying assumptions were: - The ecological and economic activities considered are within a single catchment. - The allocation of value imputed for a specific economic activity to the ecological function or service under consideration (in this case the Knysna River) is proportional to the total contribution of ecological functions or services contributed to the economic activity. - The valuation of the economic activity for the purposes of obtaining a price-quantity point on a demand function is to be full cost pricing with no producer surplus. The two functional requirements were: - Diagram or map the linkages between an economic activity and the supporting ecological functions. - Determine the consumer surplus related to an incremental change in quantity under a demand function where the original price and quantity are known. A value from each of the economic activities was imputed to the Knysna River. However, the method was not tested. Nonetheless applying the equations and collecting the required data allowed several methodological needs to be clearly pointed out. The most acute deficiency was difficulty in obtaining secondary data from governmental agencies, commercial representatives and existing published academic research to ensure a robust price. Also, scientific information was not sufficiently available for allocating ecological contributions to the economic activities. Even with the shortage of credible data the method appears to allow non-market ecological functions to be valued in context of an existing economic system.
- Full Text:
- Date Issued: 2008
An investigation into the neuroprotective and neurotoxic properties of levodopa, dopamine and selegiline
- Authors: Scheepers, Mark Wesley
- Date: 2008
- Subjects: Parkinson's disease , Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Neuroanatomy , Oxidative stress , Pharmacology , Dopamine , Selegiline , Dopaminergic neurons
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3789 , http://hdl.handle.net/10962/d1003267 , Parkinson's disease , Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Neuroanatomy , Oxidative stress , Pharmacology , Dopamine , Selegiline , Dopaminergic neurons
- Description: Parkinson’s disease (PD) is a neurodegenerative disorder characterized by a profound loss of dopaminergic neurons from the substantia nigra (SN). Among the many pathogenic mechanisms thought to be responsible for the demise of these cells, dopamine (DA)-dependent oxidative stress and oxidative damage has taken center stage due to extensive experimental evidence showing that DA-derived reactive oxygen species (ROS) and oxidized DA metabolites are toxic to SN neurons. Despite its being the most efficacious drug for symptom reversal in PD, there is concern that levodopa (LD) may contribute to the neuronal degeneration and progression of PD by enhancing DA concentrations and turnover in surviving dopaminergic neurons. The present study investigates the potential neurotoxic and neuroprotective effects of DA in vitro. These effects are compared to the toxicity and neuroprotective effects observed in the rat striatum after the administration of LD and selegiline (SEL), both of which increase striatal DA levels. The effects of exogenous LD and/or SEL administration on both the oxidative stress caused by increased striatal iron (II) levels and its consequences have also been investigated. 6-Hydroxydopamine (6-OHDA) is a potent neurotoxin used to mimic dopaminergic degeneration in animal models of PD. The formation of 6-OHDA in vivo could destroy central dopaminergic nerve terminals and enhance the progression of PD. Inorganic studies using high performance liquid chromatography with electrochemical detection (HPLC-ECD) show that hydroxyl radicals can react with DA to form 6-OHDA in vitro. SEL results in a significant decrease in the formation of 6-OHDA in vitro, probably as a result of its antioxidant properties. However, the exogenous administration of LD, with or without SEL, either does not lead to the formation of striatal 6-OHDA in vivo or produces concentrations below the detection limit of the assay. This is despite the fact that striatal DA levels in these rats are significantly elevated (two-fold) compared to the control group. The auto-oxidation and monoamine oxidase (MAO)-mediated metabolism of DA causes an increase in the production of superoxide anions in whole rat brain homogenate in vitro. In addition to this, DA is able to enhance the production of hydroxyl radicals by Fenton chemistry (Fe(III)-EDTA/H2O2) in a cell free environment. Treatment with systemic LD elevates the production of striatal superoxide anions, but does not lead to a detectable increase in striatal hydroxyl radical production in vivo. The co-adminstration of SEL with LD is able to prevent the LD induced rise in striatal superoxide levels. It has been found that the presence of DA or 6-OHDA is able to reduce lipid peroxidation in whole rat brain homogenate induced by Fe(II)-EDTA/H2O2 and ascorbate (Fenton system). However, DA and 6-OHDA increase protein oxidation in rat brain homogenate, which is further increased in the presence of the Fenton system. In addition to this, the incubation of rat brain homogenate with DA or 6-OHDA is also accompanied by a significant reduction in the total GSH content of the homogenate. The exogenous administration of LD and/or SEL was found to have no detrimental effects on striatal lipids, proteins or total GSH levels. Systemic LD administration actually had a neuroprotective effect in the striatum by inhibiting iron (II) induced lipid peroxidation. Inorganic studies, including electrochemistry and the ferrozine assay show that DA and 6-OHDA are able to release iron from ferritin, as iron (II), and that DA can bind iron (III), a fact that may easily impede the availability of this metal ion for participation in the Fenton reaction. The binding of iron (III) by DA appears to discard the involvement of the Fenton reaction in the increased production of hydroxyl radicals induced by the addition of DA to mixtures containing Fe(II)-EDTA and hydrogen peroxide. 6-OHDA did not form a metal-ligand complex with iron (II) or iron (III). In addition to the antioxidant activity and MAO-B inhibitory activity of SEL, the iron binding studies show that SEL has weak iron (II) chelating activity and that it can also form complexes with iron (III). This may therefore be another mechanism involved in the neuroprotective action of SEL. The results of the pineal indole metabolism study show that the systemic administration of SEL increases the production of N-acetylserotonin (NAS) by the pineal gland. NAS has been demonstrated to be a potent antioxidant in the brain and protects against 6-OHDA induced toxicity. The results of this study show that DA displays antioxidant properties in relation to lipid eroxidation and exhibits pro-oxidant properties by causing an increase in the production of hydroxyl radicals and superoxide anions, as well as protein oxidation and a loss of total GSH content. Despite the toxic effects of DA in vitro, the treatment of rats with exogenous LD does not cause oxidative stress or oxidative damage. The results also show that LD and SEL have some neuroprotective properties which make these agents useful in the treatment of PD.
- Full Text:
- Date Issued: 2008
- Authors: Scheepers, Mark Wesley
- Date: 2008
- Subjects: Parkinson's disease , Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Neuroanatomy , Oxidative stress , Pharmacology , Dopamine , Selegiline , Dopaminergic neurons
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3789 , http://hdl.handle.net/10962/d1003267 , Parkinson's disease , Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Neuroanatomy , Oxidative stress , Pharmacology , Dopamine , Selegiline , Dopaminergic neurons
- Description: Parkinson’s disease (PD) is a neurodegenerative disorder characterized by a profound loss of dopaminergic neurons from the substantia nigra (SN). Among the many pathogenic mechanisms thought to be responsible for the demise of these cells, dopamine (DA)-dependent oxidative stress and oxidative damage has taken center stage due to extensive experimental evidence showing that DA-derived reactive oxygen species (ROS) and oxidized DA metabolites are toxic to SN neurons. Despite its being the most efficacious drug for symptom reversal in PD, there is concern that levodopa (LD) may contribute to the neuronal degeneration and progression of PD by enhancing DA concentrations and turnover in surviving dopaminergic neurons. The present study investigates the potential neurotoxic and neuroprotective effects of DA in vitro. These effects are compared to the toxicity and neuroprotective effects observed in the rat striatum after the administration of LD and selegiline (SEL), both of which increase striatal DA levels. The effects of exogenous LD and/or SEL administration on both the oxidative stress caused by increased striatal iron (II) levels and its consequences have also been investigated. 6-Hydroxydopamine (6-OHDA) is a potent neurotoxin used to mimic dopaminergic degeneration in animal models of PD. The formation of 6-OHDA in vivo could destroy central dopaminergic nerve terminals and enhance the progression of PD. Inorganic studies using high performance liquid chromatography with electrochemical detection (HPLC-ECD) show that hydroxyl radicals can react with DA to form 6-OHDA in vitro. SEL results in a significant decrease in the formation of 6-OHDA in vitro, probably as a result of its antioxidant properties. However, the exogenous administration of LD, with or without SEL, either does not lead to the formation of striatal 6-OHDA in vivo or produces concentrations below the detection limit of the assay. This is despite the fact that striatal DA levels in these rats are significantly elevated (two-fold) compared to the control group. The auto-oxidation and monoamine oxidase (MAO)-mediated metabolism of DA causes an increase in the production of superoxide anions in whole rat brain homogenate in vitro. In addition to this, DA is able to enhance the production of hydroxyl radicals by Fenton chemistry (Fe(III)-EDTA/H2O2) in a cell free environment. Treatment with systemic LD elevates the production of striatal superoxide anions, but does not lead to a detectable increase in striatal hydroxyl radical production in vivo. The co-adminstration of SEL with LD is able to prevent the LD induced rise in striatal superoxide levels. It has been found that the presence of DA or 6-OHDA is able to reduce lipid peroxidation in whole rat brain homogenate induced by Fe(II)-EDTA/H2O2 and ascorbate (Fenton system). However, DA and 6-OHDA increase protein oxidation in rat brain homogenate, which is further increased in the presence of the Fenton system. In addition to this, the incubation of rat brain homogenate with DA or 6-OHDA is also accompanied by a significant reduction in the total GSH content of the homogenate. The exogenous administration of LD and/or SEL was found to have no detrimental effects on striatal lipids, proteins or total GSH levels. Systemic LD administration actually had a neuroprotective effect in the striatum by inhibiting iron (II) induced lipid peroxidation. Inorganic studies, including electrochemistry and the ferrozine assay show that DA and 6-OHDA are able to release iron from ferritin, as iron (II), and that DA can bind iron (III), a fact that may easily impede the availability of this metal ion for participation in the Fenton reaction. The binding of iron (III) by DA appears to discard the involvement of the Fenton reaction in the increased production of hydroxyl radicals induced by the addition of DA to mixtures containing Fe(II)-EDTA and hydrogen peroxide. 6-OHDA did not form a metal-ligand complex with iron (II) or iron (III). In addition to the antioxidant activity and MAO-B inhibitory activity of SEL, the iron binding studies show that SEL has weak iron (II) chelating activity and that it can also form complexes with iron (III). This may therefore be another mechanism involved in the neuroprotective action of SEL. The results of the pineal indole metabolism study show that the systemic administration of SEL increases the production of N-acetylserotonin (NAS) by the pineal gland. NAS has been demonstrated to be a potent antioxidant in the brain and protects against 6-OHDA induced toxicity. The results of this study show that DA displays antioxidant properties in relation to lipid eroxidation and exhibits pro-oxidant properties by causing an increase in the production of hydroxyl radicals and superoxide anions, as well as protein oxidation and a loss of total GSH content. Despite the toxic effects of DA in vitro, the treatment of rats with exogenous LD does not cause oxidative stress or oxidative damage. The results also show that LD and SEL have some neuroprotective properties which make these agents useful in the treatment of PD.
- Full Text:
- Date Issued: 2008
The potential roles of interactions between STAT3, Hsp90, and Hop in the maintenance of self-renewal in mouse embryonic stem cells
- Authors: Setati, Mokgadi Michael
- Date: 2008
- Subjects: Embryonic stem cells , Leukemia inhibitory factor , Cellular signal transduction , Heat shock proteins , Molecular chaperones
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3981 , http://hdl.handle.net/10962/d1004040 , Embryonic stem cells , Leukemia inhibitory factor , Cellular signal transduction , Heat shock proteins , Molecular chaperones
- Description: Self-renewal of mouse embryonic stem (mES) cells is dependent upon the presence of leukemia inhibitory factor (LIF). LIF induces tyrosine phosphorylation and nuclear translocation of STAT3 (signal transducer and activator of transcription 3) which is thought to promote self-renewal by inducing key target genes. The molecular chaperone heat shock protein 90 (Hsp90) is involved in signal transduction pathways and regulates STAT3 activity in different cell types. However, the role of Hsp90 in regulating STAT3 activity in mES cells has not previously been investigated. The aim of this study was to investigate if Hsp90 interacts with STAT3 in mES cells and to determine if this interaction is important for the maintenance of self-renewal. It was found that when mES cells were cultured for 24.0 hours in the absence of LIF, the expression levels of total STAT3, tyrosine-phosphorylated STAT3 (pYSTAT3), and the pluripotency marker, Nanog, were down regulated. However, the expression level of Hsp90 was found to be slightly up-regulated over the same period. Significantly, it was found that the amount of STAT3 in differentiating mES cells available for binding to Hsp90 was decreased upon down-regulation of STAT3 by LIF withdrawal. Therefore, STAT3-Hsp90 interactions in mES cells were dependent on the presence of LIF, which suggested that the reduction in STAT3-Hsp90 interaction may have resulted from the low levels of STAT3. Despite a dramatic reduction in the expression levels of pYSTAT3 upon 24.0 hours of culture of mES cells in the presence of the STAT3 tyrosine phosphorylation inhibitor, cucurbitanin I, there was no obvious reduction in the levels of total STAT3, Oct-3/4 or Nanog. These results suggested that the levels of unphosphorylated STAT3 rather than pYSTAT3, maybe more important in the maintenance of mES cells self-renewal.
- Full Text:
- Date Issued: 2008
- Authors: Setati, Mokgadi Michael
- Date: 2008
- Subjects: Embryonic stem cells , Leukemia inhibitory factor , Cellular signal transduction , Heat shock proteins , Molecular chaperones
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3981 , http://hdl.handle.net/10962/d1004040 , Embryonic stem cells , Leukemia inhibitory factor , Cellular signal transduction , Heat shock proteins , Molecular chaperones
- Description: Self-renewal of mouse embryonic stem (mES) cells is dependent upon the presence of leukemia inhibitory factor (LIF). LIF induces tyrosine phosphorylation and nuclear translocation of STAT3 (signal transducer and activator of transcription 3) which is thought to promote self-renewal by inducing key target genes. The molecular chaperone heat shock protein 90 (Hsp90) is involved in signal transduction pathways and regulates STAT3 activity in different cell types. However, the role of Hsp90 in regulating STAT3 activity in mES cells has not previously been investigated. The aim of this study was to investigate if Hsp90 interacts with STAT3 in mES cells and to determine if this interaction is important for the maintenance of self-renewal. It was found that when mES cells were cultured for 24.0 hours in the absence of LIF, the expression levels of total STAT3, tyrosine-phosphorylated STAT3 (pYSTAT3), and the pluripotency marker, Nanog, were down regulated. However, the expression level of Hsp90 was found to be slightly up-regulated over the same period. Significantly, it was found that the amount of STAT3 in differentiating mES cells available for binding to Hsp90 was decreased upon down-regulation of STAT3 by LIF withdrawal. Therefore, STAT3-Hsp90 interactions in mES cells were dependent on the presence of LIF, which suggested that the reduction in STAT3-Hsp90 interaction may have resulted from the low levels of STAT3. Despite a dramatic reduction in the expression levels of pYSTAT3 upon 24.0 hours of culture of mES cells in the presence of the STAT3 tyrosine phosphorylation inhibitor, cucurbitanin I, there was no obvious reduction in the levels of total STAT3, Oct-3/4 or Nanog. These results suggested that the levels of unphosphorylated STAT3 rather than pYSTAT3, maybe more important in the maintenance of mES cells self-renewal.
- Full Text:
- Date Issued: 2008
Connection management applications for high-speed audio networking
- Authors: Sibanda, Phathisile
- Date: 2008 , 2008-03-12
- Subjects: Flash (Computer file) , Computer networks , Computer networks -- Management , Digital communications , Computer sound processing , Sound -- Recording and reproducing -- Digital techniques , Broadcast data systems , C# (Computer program language) , C++ (Computer program language) , ActionScript (Computer program language)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4634 , http://hdl.handle.net/10962/d1006532 , Flash (Computer file) , Computer networks , Computer networks -- Management , Digital communications , Computer sound processing , Sound -- Recording and reproducing -- Digital techniques , Broadcast data systems , C# (Computer program language) , C++ (Computer program language) , ActionScript (Computer program language)
- Description: Traditionally, connection management applications (referred to as patchbays) for high-speed audio networking, are predominantly developed using third-generation languages such as C, C# and C++. Due to the rapid increase in distributed audio/video network usage in the world today, connection management applications that control signal routing over these networks have also evolved in complexity to accommodate more functionality. As the result, high-speed audio networking application developers require a tool that will enable them to develop complex connection management applications easily and within the shortest possible time. In addition, this tool should provide them with the reliability and flexibility required to develop applications controlling signal routing in networks carrying real-time data. High-speed audio networks are used for various purposes that include audio/video production and broadcasting. This investigation evaluates the possibility of using Adobe Flash Professional 8, using ActionScript 2.0, for developing connection management applications. Three patchbays, namely the Broadcast patchbay, the Project studio patchbay, and the Hospitality/Convention Centre patchbay were developed and tested for connection management in three sound installation networks, namely the Broadcast network, the Project studio network, and the Hospitality/Convention Centre network. Findings indicate that complex connection management applications can effectively be implemented using the Adobe Flash IDE and ActionScript 2.0.
- Full Text:
- Date Issued: 2008
- Authors: Sibanda, Phathisile
- Date: 2008 , 2008-03-12
- Subjects: Flash (Computer file) , Computer networks , Computer networks -- Management , Digital communications , Computer sound processing , Sound -- Recording and reproducing -- Digital techniques , Broadcast data systems , C# (Computer program language) , C++ (Computer program language) , ActionScript (Computer program language)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4634 , http://hdl.handle.net/10962/d1006532 , Flash (Computer file) , Computer networks , Computer networks -- Management , Digital communications , Computer sound processing , Sound -- Recording and reproducing -- Digital techniques , Broadcast data systems , C# (Computer program language) , C++ (Computer program language) , ActionScript (Computer program language)
- Description: Traditionally, connection management applications (referred to as patchbays) for high-speed audio networking, are predominantly developed using third-generation languages such as C, C# and C++. Due to the rapid increase in distributed audio/video network usage in the world today, connection management applications that control signal routing over these networks have also evolved in complexity to accommodate more functionality. As the result, high-speed audio networking application developers require a tool that will enable them to develop complex connection management applications easily and within the shortest possible time. In addition, this tool should provide them with the reliability and flexibility required to develop applications controlling signal routing in networks carrying real-time data. High-speed audio networks are used for various purposes that include audio/video production and broadcasting. This investigation evaluates the possibility of using Adobe Flash Professional 8, using ActionScript 2.0, for developing connection management applications. Three patchbays, namely the Broadcast patchbay, the Project studio patchbay, and the Hospitality/Convention Centre patchbay were developed and tested for connection management in three sound installation networks, namely the Broadcast network, the Project studio network, and the Hospitality/Convention Centre network. Findings indicate that complex connection management applications can effectively be implemented using the Adobe Flash IDE and ActionScript 2.0.
- Full Text:
- Date Issued: 2008
Manufacturing as a reference for rethinking construction design management
- Authors: Sidloyi, Xabiso
- Date: 2008
- Subjects: Industrial design -- Management , Construction industry -- Management -- South Africa -- Eastern Cape , Architecture -- Management
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9667 , http://hdl.handle.net/10948/766 , Industrial design -- Management , Construction industry -- Management -- South Africa -- Eastern Cape , Architecture -- Management
- Description: Design changes due to lack of constructability, cost overruns, delays and dissatisfied clients are but a few problems experienced in construction due to poor management of the design processes. Increased problems, challenges, demands and continuous criticism of the architectural profession has led to increased demand for research into the improvement of design processes. The aims of this research were to determine the adequacy of design management processes used by Eastern Cape (EC) architectural companies and compare these with the design management processes used in manufacturing in order to establish practices, theories, principles, technologies and deliverables that can be transferred from the manufacturing into the construction to improve efficiency of architectural design management. The quantitative research approach was implemented for this research, the questionnaire was designed to acquire primary, factual and attitudinal data from EC architectural companies and secondary data were acquired through a literature review. The results revealed that design management processes, continuous improvement philosophies, lean principles, and Information and Communication Technology (ICT) used by EC architectural companies are not similar to those used in manufacturing. Therefore EC architectural companies could increase their efficiency by adopting some of the design management processes, ICT, continuous improvement philosophies and lean principles originating from the manufacturing industry.
- Full Text:
- Date Issued: 2008
- Authors: Sidloyi, Xabiso
- Date: 2008
- Subjects: Industrial design -- Management , Construction industry -- Management -- South Africa -- Eastern Cape , Architecture -- Management
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9667 , http://hdl.handle.net/10948/766 , Industrial design -- Management , Construction industry -- Management -- South Africa -- Eastern Cape , Architecture -- Management
- Description: Design changes due to lack of constructability, cost overruns, delays and dissatisfied clients are but a few problems experienced in construction due to poor management of the design processes. Increased problems, challenges, demands and continuous criticism of the architectural profession has led to increased demand for research into the improvement of design processes. The aims of this research were to determine the adequacy of design management processes used by Eastern Cape (EC) architectural companies and compare these with the design management processes used in manufacturing in order to establish practices, theories, principles, technologies and deliverables that can be transferred from the manufacturing into the construction to improve efficiency of architectural design management. The quantitative research approach was implemented for this research, the questionnaire was designed to acquire primary, factual and attitudinal data from EC architectural companies and secondary data were acquired through a literature review. The results revealed that design management processes, continuous improvement philosophies, lean principles, and Information and Communication Technology (ICT) used by EC architectural companies are not similar to those used in manufacturing. Therefore EC architectural companies could increase their efficiency by adopting some of the design management processes, ICT, continuous improvement philosophies and lean principles originating from the manufacturing industry.
- Full Text:
- Date Issued: 2008
Treatment and care of children and adolescents diagnosed with Attention deficit/Hyperactivity disorder
- Authors: Snyman, Sanmari
- Date: 2008
- Subjects: Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10144 , http://hdl.handle.net/10948/871 , Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Description: Background: In recent years the incidence of Attention Deficit/Hyperactivity Disorder (ADHD) has increased. Objectives: The primary aim of the study was to determine the treatment of children and adolescents diagnosed with ADHD in South Africa and more specifically the Eastern Cape. Methods: The study consisted of two parts, a retrospective drug utilisation study and a questionnaire survey. The drug utilisation study was conducted on chronic medication records of a private sector medical scheme administrator and contained records from 1994 to 2006. A total of 42 250 records representing 8 274 patients and 4 001 families, were analysed. The questionnaire survey was conducted in the Eastern Cape. The questionnaires were distributed by responsible pharmacists to parents of children receiving medication for the treatment of ADHD from his/her pharmacy. Fifty one completed questionnaires were analysed. Results: The average age of patients in the drug utilisation study were 14.28 (SD = 5.50) years. Males represented 77.37 percent of patients. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product, followed by Ritalin® LA 20 mg. The two most frequently prescribed active ingredients apart from methylphenidate were fluticasone and budesonide. The two most common comorbid conditions were allergic rhinitis and asthma. The average age of patients in the questionnaire survey was 10.26 (SD = 2.51) years. Males represented 73.58 percent of patients. A third of patients had relatives previously diagnosed with ADHD. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product. Conclusion: ADHD is a complex life-long disorder. It does not only affect the child diagnosed with the disorder, but also has effects on the family, schooling system and peer relationship. Therefore, more studies regarding the incidence and treatment of ADHD need to be conducted in South Africa.
- Full Text:
- Date Issued: 2008
- Authors: Snyman, Sanmari
- Date: 2008
- Subjects: Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10144 , http://hdl.handle.net/10948/871 , Attention-deficit disorder in adolescence , Hyperactive children -- South Africa -- Port Elizabeth
- Description: Background: In recent years the incidence of Attention Deficit/Hyperactivity Disorder (ADHD) has increased. Objectives: The primary aim of the study was to determine the treatment of children and adolescents diagnosed with ADHD in South Africa and more specifically the Eastern Cape. Methods: The study consisted of two parts, a retrospective drug utilisation study and a questionnaire survey. The drug utilisation study was conducted on chronic medication records of a private sector medical scheme administrator and contained records from 1994 to 2006. A total of 42 250 records representing 8 274 patients and 4 001 families, were analysed. The questionnaire survey was conducted in the Eastern Cape. The questionnaires were distributed by responsible pharmacists to parents of children receiving medication for the treatment of ADHD from his/her pharmacy. Fifty one completed questionnaires were analysed. Results: The average age of patients in the drug utilisation study were 14.28 (SD = 5.50) years. Males represented 77.37 percent of patients. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product, followed by Ritalin® LA 20 mg. The two most frequently prescribed active ingredients apart from methylphenidate were fluticasone and budesonide. The two most common comorbid conditions were allergic rhinitis and asthma. The average age of patients in the questionnaire survey was 10.26 (SD = 2.51) years. Males represented 73.58 percent of patients. A third of patients had relatives previously diagnosed with ADHD. Ritalin® 10 mg was the most frequently prescribed methylphenidate-containing product. Conclusion: ADHD is a complex life-long disorder. It does not only affect the child diagnosed with the disorder, but also has effects on the family, schooling system and peer relationship. Therefore, more studies regarding the incidence and treatment of ADHD need to be conducted in South Africa.
- Full Text:
- Date Issued: 2008
Natural resource harvesting and disturbance in communal lands: assessing the roles of local ecological knowledge, dependency and market access
- Authors: Steele, Melita Zoë
- Date: 2008
- Subjects: Non-timber forest products -- South Africa , Natural resources -- South Africa , Rural poor -- South Africa , Rural development -- South Africa , Forests and forestry -- South Africa , Households -- Economic aspects -- South Africa , Natural resources, Communal -- South Africa , Commons -- South Africa , Forest ecology -- South Africa , Harvesting
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4736 , http://hdl.handle.net/10962/d1004604 , Non-timber forest products -- South Africa , Natural resources -- South Africa , Rural poor -- South Africa , Rural development -- South Africa , Forests and forestry -- South Africa , Households -- Economic aspects -- South Africa , Natural resources, Communal -- South Africa , Commons -- South Africa , Forest ecology -- South Africa , Harvesting
- Description: A great deal of research has demonstrated that Non-Timber Forest Products (NTFPs) play a crucial role in the livelihoods of the rural poor, and are particularly important to the most marginalised people throughout the developing world. However, these livelihood benefits are not without cost to the natural resource base that rural communities depend so heavily upon. The continued dependence on NTFPs as a major livelihood source must be contingent upon the minimisation of the level of disturbance created through this dependency. This study assesses the level of disturbance created through natural resource harvesting in eight study sites around South Africa, and applies a predictive conceptual model created by Shankaar et al. (2004b) to try and ascertain under what conditions the level of disturbance created through natural resource harvesting will be high. It assesses the three key factors that Shankaar et al. (2004b) identified (level of Local Ecological Knowledge (LEK), level of dependency and access to markets) in relation to the level of disturbance found at each of the study sites. It was found that there was a statistically significant relationship between the level of dependency and the level of disturbance, but there was no statistically significant relationship between either access to markets or the level of LEK and disturbance. Regulation of land use is a key issue, with weak local institutions in communal areas making effective resource management difficult. The significance of these findings is discussed, and priorities for future research are identified. This study adds to the body of knowledge related to NTFP harvesting and critically analyses the conflicts between the livelihood gains and the level of disturbance created through NTFP harvesting in an attempt to ascertain how livelihoods can be safeguarded. And in the longer-term, so that management strategies can be identified where resource extraction is not at the cost of undermining the very livelihoods that depend upon the natural resource base.
- Full Text:
- Date Issued: 2008
- Authors: Steele, Melita Zoë
- Date: 2008
- Subjects: Non-timber forest products -- South Africa , Natural resources -- South Africa , Rural poor -- South Africa , Rural development -- South Africa , Forests and forestry -- South Africa , Households -- Economic aspects -- South Africa , Natural resources, Communal -- South Africa , Commons -- South Africa , Forest ecology -- South Africa , Harvesting
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4736 , http://hdl.handle.net/10962/d1004604 , Non-timber forest products -- South Africa , Natural resources -- South Africa , Rural poor -- South Africa , Rural development -- South Africa , Forests and forestry -- South Africa , Households -- Economic aspects -- South Africa , Natural resources, Communal -- South Africa , Commons -- South Africa , Forest ecology -- South Africa , Harvesting
- Description: A great deal of research has demonstrated that Non-Timber Forest Products (NTFPs) play a crucial role in the livelihoods of the rural poor, and are particularly important to the most marginalised people throughout the developing world. However, these livelihood benefits are not without cost to the natural resource base that rural communities depend so heavily upon. The continued dependence on NTFPs as a major livelihood source must be contingent upon the minimisation of the level of disturbance created through this dependency. This study assesses the level of disturbance created through natural resource harvesting in eight study sites around South Africa, and applies a predictive conceptual model created by Shankaar et al. (2004b) to try and ascertain under what conditions the level of disturbance created through natural resource harvesting will be high. It assesses the three key factors that Shankaar et al. (2004b) identified (level of Local Ecological Knowledge (LEK), level of dependency and access to markets) in relation to the level of disturbance found at each of the study sites. It was found that there was a statistically significant relationship between the level of dependency and the level of disturbance, but there was no statistically significant relationship between either access to markets or the level of LEK and disturbance. Regulation of land use is a key issue, with weak local institutions in communal areas making effective resource management difficult. The significance of these findings is discussed, and priorities for future research are identified. This study adds to the body of knowledge related to NTFP harvesting and critically analyses the conflicts between the livelihood gains and the level of disturbance created through NTFP harvesting in an attempt to ascertain how livelihoods can be safeguarded. And in the longer-term, so that management strategies can be identified where resource extraction is not at the cost of undermining the very livelihoods that depend upon the natural resource base.
- Full Text:
- Date Issued: 2008
Life history, population dynamics and conservation status of Oldenburgia grandis (Asteraceae), an endemic of the Eastern Cape of South Africa
- Authors: Swart, Carin
- Date: 2008
- Subjects: Compositae , Fynbos ecology -- South Africa -- Eastern Cape , Endemic plants -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape , Plant populations -- South Africa -- Eastern Cape , Vegetation dynamics -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Endangered species -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4230 , http://hdl.handle.net/10962/d1003799 , Compositae , Fynbos ecology -- South Africa -- Eastern Cape , Endemic plants -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape , Plant populations -- South Africa -- Eastern Cape , Vegetation dynamics -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Endangered species -- South Africa -- Eastern Cape
- Description: Oldenburgia grandis is a rare, long-lived woody paleoendemic of the Fynbos Biome of South Africa. Confined to quartzite outcrops, it has a small geographic range and narrow habitat specificity. O. grandis responds to its fire-prone environment by resprouting. Elasticity analysis of O. grandis reveals that growth and fecundity were traded off for persistence of adult, mature and sapling stages. Morphological adaptations such as a corky fire-resistant bark and the ability to resprout after fire are traits that O. grandis have evolved to persist in a frequently disturbed environment. Population growth rate for sites undisturbed by fire for a number of years (l = 1.01) and sites at various stages of recovery after fire (l = 1.00) were very similar. The highest variation in transition probabilities for all sites was seen in the persistence of the seedling stage and growth from seedling to sapling. Observed population structure and stable stage distribution determined by the matrix model show that sites recently undisturbed by fire had high abundances of the adult and sapling stages. A peak in sapling stages was seen for the stable stage distribution where similar peak in sapling numbers were seen for population structures of sites at various stages of recoveryafter fire. Favourable environmental conditions for the persistence of O. grandis populations include no fire with transition probabilities between the observed minimum and maximum and fire frequency at a 10 year interval where seedling protection from the fire is high and adult and mature mortalities during the fire are low. Stochastic environmental events that could put populations (particularly small populations) at an increased risk of extinction include high to moderate fire intensities where seedling protection from the fire is low and adult and mature mortalities are high as a result of the fire.
- Full Text:
- Date Issued: 2008
- Authors: Swart, Carin
- Date: 2008
- Subjects: Compositae , Fynbos ecology -- South Africa -- Eastern Cape , Endemic plants -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape , Plant populations -- South Africa -- Eastern Cape , Vegetation dynamics -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Endangered species -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4230 , http://hdl.handle.net/10962/d1003799 , Compositae , Fynbos ecology -- South Africa -- Eastern Cape , Endemic plants -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape , Plant populations -- South Africa -- Eastern Cape , Vegetation dynamics -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Endangered species -- South Africa -- Eastern Cape
- Description: Oldenburgia grandis is a rare, long-lived woody paleoendemic of the Fynbos Biome of South Africa. Confined to quartzite outcrops, it has a small geographic range and narrow habitat specificity. O. grandis responds to its fire-prone environment by resprouting. Elasticity analysis of O. grandis reveals that growth and fecundity were traded off for persistence of adult, mature and sapling stages. Morphological adaptations such as a corky fire-resistant bark and the ability to resprout after fire are traits that O. grandis have evolved to persist in a frequently disturbed environment. Population growth rate for sites undisturbed by fire for a number of years (l = 1.01) and sites at various stages of recovery after fire (l = 1.00) were very similar. The highest variation in transition probabilities for all sites was seen in the persistence of the seedling stage and growth from seedling to sapling. Observed population structure and stable stage distribution determined by the matrix model show that sites recently undisturbed by fire had high abundances of the adult and sapling stages. A peak in sapling stages was seen for the stable stage distribution where similar peak in sapling numbers were seen for population structures of sites at various stages of recoveryafter fire. Favourable environmental conditions for the persistence of O. grandis populations include no fire with transition probabilities between the observed minimum and maximum and fire frequency at a 10 year interval where seedling protection from the fire is high and adult and mature mortalities during the fire are low. Stochastic environmental events that could put populations (particularly small populations) at an increased risk of extinction include high to moderate fire intensities where seedling protection from the fire is low and adult and mature mortalities are high as a result of the fire.
- Full Text:
- Date Issued: 2008
A facilities management transformation strategy for the public sector
- Authors: Tonono, Erol
- Date: 2008
- Subjects: Facility management -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9666 , http://hdl.handle.net/10948/767 , Facility management -- South Africa
- Description: Facilities Management (FM) has become one of the fastest growing disciplines in the built environment. Factors such as information technology, expectations of employees, the cost of mistakes in building, the cost of building space and global competition have influenced the growth of the discipline. These factors have forced facilities management to move from the basement to the boardroom; from a hidden function entrusted to the sleepy, slow and steady to one performed by increasingly bright-eyed and dynamic facilities managers. The objectives of this research focus on the need for a transformation strategy for FM in the public sector. However, before any transformation is considered, it is essential to understand the perceptions and attitudes of people dealing with FM in this sector. The National Department of Public Works (NDPW) became the focus of the study because it has the largest property portfolio in the southern hemisphere. It should be the leader in FM. The collected primary data (being quantitative) and secondary information provided the necessary basis to understand the application of FM in the NDPW. The study revealed shortcomings which are contributing to the problems outlined: namely, that no senior manager has been appointed to manage the portfolio and assist top management in decision-making; that neither a policy nor a FM framework are in place to guide the FM portfolio; that there is a lack of knowledge about the discipline, particularly by management and that there is no computer-aided FM in the entire department, let alone a FM helpdesk. FM is the coordination of workplace, people, physical infrastructure, processes and technology in order for an organization to meet its objectives. It is a wide field encompassing models that tend to differ considerably from one organization to another as it has to respond to the particular needs of each organization. It recognizes that a workplace’s configuration can have either a positive or negative impact on productivity, depending on the competency of the FM structures in place.
- Full Text:
- Date Issued: 2008
- Authors: Tonono, Erol
- Date: 2008
- Subjects: Facility management -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9666 , http://hdl.handle.net/10948/767 , Facility management -- South Africa
- Description: Facilities Management (FM) has become one of the fastest growing disciplines in the built environment. Factors such as information technology, expectations of employees, the cost of mistakes in building, the cost of building space and global competition have influenced the growth of the discipline. These factors have forced facilities management to move from the basement to the boardroom; from a hidden function entrusted to the sleepy, slow and steady to one performed by increasingly bright-eyed and dynamic facilities managers. The objectives of this research focus on the need for a transformation strategy for FM in the public sector. However, before any transformation is considered, it is essential to understand the perceptions and attitudes of people dealing with FM in this sector. The National Department of Public Works (NDPW) became the focus of the study because it has the largest property portfolio in the southern hemisphere. It should be the leader in FM. The collected primary data (being quantitative) and secondary information provided the necessary basis to understand the application of FM in the NDPW. The study revealed shortcomings which are contributing to the problems outlined: namely, that no senior manager has been appointed to manage the portfolio and assist top management in decision-making; that neither a policy nor a FM framework are in place to guide the FM portfolio; that there is a lack of knowledge about the discipline, particularly by management and that there is no computer-aided FM in the entire department, let alone a FM helpdesk. FM is the coordination of workplace, people, physical infrastructure, processes and technology in order for an organization to meet its objectives. It is a wide field encompassing models that tend to differ considerably from one organization to another as it has to respond to the particular needs of each organization. It recognizes that a workplace’s configuration can have either a positive or negative impact on productivity, depending on the competency of the FM structures in place.
- Full Text:
- Date Issued: 2008
Purification and partial characterization of a Myofibril-Bound Serine Protease and its endogenous inhibitor from skeletal muscle of the ostrich
- Tshidino, Shonisani Cathphonia
- Authors: Tshidino, Shonisani Cathphonia
- Date: 2008
- Subjects: Proteolytic enzymes , Ostrich products industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10330 , http://hdl.handle.net/10948/703 , Proteolytic enzymes , Ostrich products industry
- Description: The ostrich is becoming an important source of meat for humans in developed and developing countries. This study was conducted to purify and characterize myofibrilbound serine protease (MBSP) and its endogenous inhibitor (MBSPI) from skeletal muscle of the ostrich. It is well documented that MBSP is tightly bound to myofibrils and its endogenous inhibitor has been purified from the same tissue of other studied mammalian species. Literature supports an association of MBSP and its endogenous inhibitor with the degradation of myofribrillar proteins, resulting in the softening of muscle that lead to the conversion of muscle into meat with the control of the inhibitor. MBSP was successfully dissociated from washed myofibrils by 40 percent ethylene glycol at pH 8.5. Following centrifugation, MBSP was partially purified in two chromatographic steps, namely Toyopearl Super Q 650S and p-aminobenzamidine-Agarose. On the other hand, MBSPI was fractionated from the sarcoplasmic fraction using 75 percent ammonium sulfate saturation, followed by centrifugation and partially purified by three chromatographic steps, namely Toyopearl Super Q 650S, Superdex 200 and HiTrap SP HR. Ostrich MBSP was physicochemically and kinetically characterized, while MBSPI was only physicochemically characterized. Ostrich MBSP revealed an Mr of 21 kDa, cleaving synthetic fluorogenic substrates specifically at the carboxyl side of arginine residues. Optimum pH and temperature of ostrich MBSP were 8.0 and 40˚C, respectively. Kinetic parameters (Km and Vmax values) were calculated from Lineweaver-Burk plots. The characteristics of ostrich MBSP were compared to the values obtained for commercial bovine trypsin in this study, as well as that obtained for MBSP from various fish species and mouse. The results suggest that ostrich MBSP is a trypsin-like serine protease, thereby confirming the existence of MBSP in ostrich skeletal muscle. Partially purified ostrich MBSPI (Mr 17 kDa) (one form) shares 100 percent identity to myoglobin from the same species, while 2 other forms of MBSPI (Mr values of 35 and 36 kDa) exhibited high sequence identity to glyceraldehyde 3- phosphate dehydrogenase (GAPDH) (76 percent) from human and rat.
- Full Text:
- Date Issued: 2008
- Authors: Tshidino, Shonisani Cathphonia
- Date: 2008
- Subjects: Proteolytic enzymes , Ostrich products industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10330 , http://hdl.handle.net/10948/703 , Proteolytic enzymes , Ostrich products industry
- Description: The ostrich is becoming an important source of meat for humans in developed and developing countries. This study was conducted to purify and characterize myofibrilbound serine protease (MBSP) and its endogenous inhibitor (MBSPI) from skeletal muscle of the ostrich. It is well documented that MBSP is tightly bound to myofibrils and its endogenous inhibitor has been purified from the same tissue of other studied mammalian species. Literature supports an association of MBSP and its endogenous inhibitor with the degradation of myofribrillar proteins, resulting in the softening of muscle that lead to the conversion of muscle into meat with the control of the inhibitor. MBSP was successfully dissociated from washed myofibrils by 40 percent ethylene glycol at pH 8.5. Following centrifugation, MBSP was partially purified in two chromatographic steps, namely Toyopearl Super Q 650S and p-aminobenzamidine-Agarose. On the other hand, MBSPI was fractionated from the sarcoplasmic fraction using 75 percent ammonium sulfate saturation, followed by centrifugation and partially purified by three chromatographic steps, namely Toyopearl Super Q 650S, Superdex 200 and HiTrap SP HR. Ostrich MBSP was physicochemically and kinetically characterized, while MBSPI was only physicochemically characterized. Ostrich MBSP revealed an Mr of 21 kDa, cleaving synthetic fluorogenic substrates specifically at the carboxyl side of arginine residues. Optimum pH and temperature of ostrich MBSP were 8.0 and 40˚C, respectively. Kinetic parameters (Km and Vmax values) were calculated from Lineweaver-Burk plots. The characteristics of ostrich MBSP were compared to the values obtained for commercial bovine trypsin in this study, as well as that obtained for MBSP from various fish species and mouse. The results suggest that ostrich MBSP is a trypsin-like serine protease, thereby confirming the existence of MBSP in ostrich skeletal muscle. Partially purified ostrich MBSPI (Mr 17 kDa) (one form) shares 100 percent identity to myoglobin from the same species, while 2 other forms of MBSPI (Mr values of 35 and 36 kDa) exhibited high sequence identity to glyceraldehyde 3- phosphate dehydrogenase (GAPDH) (76 percent) from human and rat.
- Full Text:
- Date Issued: 2008