Global proliferation of cephalopods
- Doubleday, Zoë A, Prowse, Thomas A A, Arkhipkin, Alexander, Pierce, Graham J, Semmens, Jayson, Steer, Michael, Leporati, Stephen C, Lourenço, Sílvia, Quetglas, Antoni, Sauer, Warwick H H, Gillanders, Bronwyn M
- Authors: Doubleday, Zoë A , Prowse, Thomas A A , Arkhipkin, Alexander , Pierce, Graham J , Semmens, Jayson , Steer, Michael , Leporati, Stephen C , Lourenço, Sílvia , Quetglas, Antoni , Sauer, Warwick H H , Gillanders, Bronwyn M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124560 , vital:35628 , https://doi.10.1016/j.cub.2016.04.002
- Description: Human activities have substantially changed the world’s oceans in recent decades, altering marine food webs, habitats and biogeochemical processes [1]. Cephalopods (squid, cuttlefish and octopuses) have a unique set of biological traits, including rapid growth, short lifespans and strong life-history plasticity, allowing them to adapt quickly to changing environmental conditions [2–4]. There has been growing speculation that cephalopod populations are proliferating in response to a changing environment, a perception fuelled by increasing trends in cephalopod fisheries catch [4,5]. To investigate long-term trends in cephalopod abundance, we assembled global time-series of cephalopod catch rates (catch per unit of fishing or sampling effort). We show that cephalopod populations have increased over the last six decades, a result that was remarkably consistent across a highly diverse set of cephalopod taxa. Positive trends were also evident for both fisheries-dependent and fisheries independent time-series, suggesting that trends are not solely due to factors associated with developing fisheries. Our results suggest that large-scale, directional processes, common to a range of coastal and oceanic environments, are responsible. This study presents the first evidence that cephalopod populations have increased globally, indicating that these ecologically and commercially important invertebrates may have benefited from a changing ocean environment.
- Full Text:
- Date Issued: 2016
- Authors: Doubleday, Zoë A , Prowse, Thomas A A , Arkhipkin, Alexander , Pierce, Graham J , Semmens, Jayson , Steer, Michael , Leporati, Stephen C , Lourenço, Sílvia , Quetglas, Antoni , Sauer, Warwick H H , Gillanders, Bronwyn M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/124560 , vital:35628 , https://doi.10.1016/j.cub.2016.04.002
- Description: Human activities have substantially changed the world’s oceans in recent decades, altering marine food webs, habitats and biogeochemical processes [1]. Cephalopods (squid, cuttlefish and octopuses) have a unique set of biological traits, including rapid growth, short lifespans and strong life-history plasticity, allowing them to adapt quickly to changing environmental conditions [2–4]. There has been growing speculation that cephalopod populations are proliferating in response to a changing environment, a perception fuelled by increasing trends in cephalopod fisheries catch [4,5]. To investigate long-term trends in cephalopod abundance, we assembled global time-series of cephalopod catch rates (catch per unit of fishing or sampling effort). We show that cephalopod populations have increased over the last six decades, a result that was remarkably consistent across a highly diverse set of cephalopod taxa. Positive trends were also evident for both fisheries-dependent and fisheries independent time-series, suggesting that trends are not solely due to factors associated with developing fisheries. Our results suggest that large-scale, directional processes, common to a range of coastal and oceanic environments, are responsible. This study presents the first evidence that cephalopod populations have increased globally, indicating that these ecologically and commercially important invertebrates may have benefited from a changing ocean environment.
- Full Text:
- Date Issued: 2016
Encompassing the relative non-target risks from agents and their alien plant targets in biological control assessments
- Downey, Paul O, Paterson, Iain D
- Authors: Downey, Paul O , Paterson, Iain D
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/417940 , vital:71496 , xlink:href="https://doi.org/10.1007/s10526-016-9744-1"
- Description: Criticisms about the safety of biological control of alien plants has resulted in a risk-averse approach, where the risks posed by the agent are paramount and the risks posed by the alien plant are neglected. We argue that the risk associated with non-target damage from agents needs to be assessed relative to that of their target alien plants. A literature review of the non-target risks associated with biological control agents was undertaken in terms of the risk to native species from agents relative to the risk to native species from their alien plant targets. We then developed a framework that compares the consequence with the likelihood of non-target damage for both agents and their targets to provide an overall risk rating. Assessments of the risk of damage from both agents and their target alien plants will enable researchers, managers and policy makers to better assess the risks from biological control.
- Full Text:
- Date Issued: 2016
- Authors: Downey, Paul O , Paterson, Iain D
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/417940 , vital:71496 , xlink:href="https://doi.org/10.1007/s10526-016-9744-1"
- Description: Criticisms about the safety of biological control of alien plants has resulted in a risk-averse approach, where the risks posed by the agent are paramount and the risks posed by the alien plant are neglected. We argue that the risk associated with non-target damage from agents needs to be assessed relative to that of their target alien plants. A literature review of the non-target risks associated with biological control agents was undertaken in terms of the risk to native species from agents relative to the risk to native species from their alien plant targets. We then developed a framework that compares the consequence with the likelihood of non-target damage for both agents and their targets to provide an overall risk rating. Assessments of the risk of damage from both agents and their target alien plants will enable researchers, managers and policy makers to better assess the risks from biological control.
- Full Text:
- Date Issued: 2016
Modelling transport of inshore and deep-spawned chokka squid (Loligo reynaudi) paralarvae off South Africa: the potential contribution of deep spawning to recruitment
- Downey-Breedt, Nicola, Roberts, Michael J, Sauer, Warwick H H, Chang, N
- Authors: Downey-Breedt, Nicola , Roberts, Michael J , Sauer, Warwick H H , Chang, N
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125183 , vital:35742 , https://doi.10.1111/fog.12132
- Description: The South African chokka squid, Loligo reynaudi, spawns both inshore (≤70 m) and on the mid-shelf (71–130 m) of the Eastern Agulhas Bank. The fate of these deep-spawned hatchlings and their potential contribution to recruitment is as yet unknown. Lagrangian ROMS-IBM (Regional Ocean Modelling System-Individual-Based Model) simulations confirm westward transport of inshore and deep-spawned hatchlings, but also indicate that the potential exists for paralarvae hatched on the Eastern Agulhas Bank deep spawning grounds to be removed from the shelf ecosystem. Using a ROMS-IBM, this study determined the transport and recruitment success of deepspawned hatchlings relative to inshore-hatched paralarvae. A total of 12 release sites were incorporated into the model, six inshore and six deep-spawning sites. Paralarval survival was estimated based on timely transport to nursery grounds, adequate retention within the nursery grounds and retention on the Agulhas Bank shelf. Paralarval transport and survival were dependent on both spawning location and time of hatching. Results suggest the importance of the south coast as a nursery area for inshore-hatched paralarvae, and similarly the cold ridge nursery grounds for deep-hatched paralarvae. Possible relationships between periods of highest recruitment success and spawning peaks were identified for both spawning habitats. Based on the likely autumn increase in deep spawning off the Tsitsikamma coast, and the beneficial currents during this period (as indicated by the model results) it can be concluded that deep spawning may at times contribute significantly to recruitment.
- Full Text:
- Date Issued: 2016
- Authors: Downey-Breedt, Nicola , Roberts, Michael J , Sauer, Warwick H H , Chang, N
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125183 , vital:35742 , https://doi.10.1111/fog.12132
- Description: The South African chokka squid, Loligo reynaudi, spawns both inshore (≤70 m) and on the mid-shelf (71–130 m) of the Eastern Agulhas Bank. The fate of these deep-spawned hatchlings and their potential contribution to recruitment is as yet unknown. Lagrangian ROMS-IBM (Regional Ocean Modelling System-Individual-Based Model) simulations confirm westward transport of inshore and deep-spawned hatchlings, but also indicate that the potential exists for paralarvae hatched on the Eastern Agulhas Bank deep spawning grounds to be removed from the shelf ecosystem. Using a ROMS-IBM, this study determined the transport and recruitment success of deepspawned hatchlings relative to inshore-hatched paralarvae. A total of 12 release sites were incorporated into the model, six inshore and six deep-spawning sites. Paralarval survival was estimated based on timely transport to nursery grounds, adequate retention within the nursery grounds and retention on the Agulhas Bank shelf. Paralarval transport and survival were dependent on both spawning location and time of hatching. Results suggest the importance of the south coast as a nursery area for inshore-hatched paralarvae, and similarly the cold ridge nursery grounds for deep-hatched paralarvae. Possible relationships between periods of highest recruitment success and spawning peaks were identified for both spawning habitats. Based on the likely autumn increase in deep spawning off the Tsitsikamma coast, and the beneficial currents during this period (as indicated by the model results) it can be concluded that deep spawning may at times contribute significantly to recruitment.
- Full Text:
- Date Issued: 2016
The limitations of current health literacy measures for use in developing countries:
- Authors: Dowse, Roslind
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156607 , vital:40030 , DOI: 10.1080/17538068.2016.1147742
- Description: Health literacy measures have largely emanated from developed countries, reflecting the characteristics of their economies, populations, and health systems. In contrast, it is disconcerting that health literacy appears to be so under-researched in developing countries (DCs), despite the likelihood of inadequate health literacy being endemic. In this commentary, I highlight some challenges when using existing health literacy measures in DCs and conclude with a summary of considerations when using/developing a tool for these populations.
- Full Text:
- Date Issued: 2016
- Authors: Dowse, Roslind
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/156607 , vital:40030 , DOI: 10.1080/17538068.2016.1147742
- Description: Health literacy measures have largely emanated from developed countries, reflecting the characteristics of their economies, populations, and health systems. In contrast, it is disconcerting that health literacy appears to be so under-researched in developing countries (DCs), despite the likelihood of inadequate health literacy being endemic. In this commentary, I highlight some challenges when using existing health literacy measures in DCs and conclude with a summary of considerations when using/developing a tool for these populations.
- Full Text:
- Date Issued: 2016
Principles of Control Protocol Design and Implementation
- Eales, Andrew, Foss, Richard
- Authors: Eales, Andrew , Foss, Richard
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426801 , vital:72392 , https://www.aes.org/e-lib/online/browse.cfm?elib=18238
- Description: Control protocols are used within audio networks to manage both audio streams and networked audio devices. A number of control protocols for audio devices have been recently developed, including the AES standards AES64-2012 and AES70-2015. Despite these developments, an ontology of control protocol design and implementation does not exist. This paper proposes design and implementation heuristics for control protocols. Different categories of control protocol design and implementation heuristics are presented and the implications of individual heuristics are discussed. These heuristics allow the features provided by different control protocols to be compared and evaluated and provide guidelines for future control protocol development.
- Full Text:
- Date Issued: 2016
- Authors: Eales, Andrew , Foss, Richard
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426801 , vital:72392 , https://www.aes.org/e-lib/online/browse.cfm?elib=18238
- Description: Control protocols are used within audio networks to manage both audio streams and networked audio devices. A number of control protocols for audio devices have been recently developed, including the AES standards AES64-2012 and AES70-2015. Despite these developments, an ontology of control protocol design and implementation does not exist. This paper proposes design and implementation heuristics for control protocols. Different categories of control protocol design and implementation heuristics are presented and the implications of individual heuristics are discussed. These heuristics allow the features provided by different control protocols to be compared and evaluated and provide guidelines for future control protocol development.
- Full Text:
- Date Issued: 2016
Hsp90 co-chaperones as drug targets in cancer: current perspectives
- Authors: Edkins, Adrienne L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66347 , vital:28938 , https://doi.org/10.1007/7355_2015_99
- Description: publisher version , Hsp90 is a molecular chaperone that regulates the function of numerous oncogenic transcription factors and signalling intermediates in the cell. Inhibition of Hsp90 is sufficient to induce the proteosomal degradation of many of these proteins, and as such, the Hsp90 chaperone has been regarded as a promising drug target. The appropriate functioning of the Hsp90 chaperone is dependent on its ATPase activity and interactions with a cohort of non-substrate accessory proteins known as co-chaperones. Co-chaperones associate with Hsp90 at all stages of the chaperone cycle and regulate a range of Hsp90 functions, including ATP hydrolysis and client protein binding and release. Given the ability of co-chaperones to organise the function of the Hsp90 molecular machine, these proteins are now regarded as potential drug targets. Herein the role of selected Hsp90 co-chaperones Hop, Cdc37, p23 and Aha1 as possible drug targets is discussed with a focus on cancer. , This work is based on the research supported by the South African Research Chairs Initiative of the Department of Science and Technology and National Research Foundation of South Africa (Grant No 98566), the Cancer Association of South Africa (CANSA), Medical Research Council South Africa (MRC-SA) and Rhodes University. The views expressed are those of the authors and should not be attributed to the DST, NRF, CANSA, MRC-SA or Rhodes University. We apologize if we have inadvertently missed any important contributions to the field.
- Full Text: false
- Date Issued: 2016
- Authors: Edkins, Adrienne L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66347 , vital:28938 , https://doi.org/10.1007/7355_2015_99
- Description: publisher version , Hsp90 is a molecular chaperone that regulates the function of numerous oncogenic transcription factors and signalling intermediates in the cell. Inhibition of Hsp90 is sufficient to induce the proteosomal degradation of many of these proteins, and as such, the Hsp90 chaperone has been regarded as a promising drug target. The appropriate functioning of the Hsp90 chaperone is dependent on its ATPase activity and interactions with a cohort of non-substrate accessory proteins known as co-chaperones. Co-chaperones associate with Hsp90 at all stages of the chaperone cycle and regulate a range of Hsp90 functions, including ATP hydrolysis and client protein binding and release. Given the ability of co-chaperones to organise the function of the Hsp90 molecular machine, these proteins are now regarded as potential drug targets. Herein the role of selected Hsp90 co-chaperones Hop, Cdc37, p23 and Aha1 as possible drug targets is discussed with a focus on cancer. , This work is based on the research supported by the South African Research Chairs Initiative of the Department of Science and Technology and National Research Foundation of South Africa (Grant No 98566), the Cancer Association of South Africa (CANSA), Medical Research Council South Africa (MRC-SA) and Rhodes University. The views expressed are those of the authors and should not be attributed to the DST, NRF, CANSA, MRC-SA or Rhodes University. We apologize if we have inadvertently missed any important contributions to the field.
- Full Text: false
- Date Issued: 2016
The importance of long-term post-release studies in classical biological control: Insect–plant monitoring and public awareness of water hyacinth management (Pontederia crassipes) in Dique Los Sauces, Argentina
- Faltlhauser, Ana C, Jiménez, Nadia L, Righetti, Tomas, Visintin, Andrés M, Torrens, Javier, Salinas, Nicolás A, Mc Kay, Fernando, Hill, Martin P, Cordo, Hugo A, Sosa, Alejandro J
- Authors: Faltlhauser, Ana C , Jiménez, Nadia L , Righetti, Tomas , Visintin, Andrés M , Torrens, Javier , Salinas, Nicolás A , Mc Kay, Fernando , Hill, Martin P , Cordo, Hugo A , Sosa, Alejandro J
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/424828 , vital:72187 , xlink:href="https://doi.org/10.1111/eea.13355"
- Description: Several components of classical biological control (CBC) programmes are necessary to assess the success of the management strategy (e.g., post-release monitoring) and also help prevent reintroductions or resurgences of invasive species (e.g., public awareness). Water hyacinth, Pontederia (= Eichhornia) crassipes (Mart.) Solms (Pontederiaceae) is an aquatic plant naturally distributed in the north-eastern region of the Del Plata basin in Argentina. In the 1960s it was introduced into the Dique Los Sauces reservoir located outside of its native range in La Rioja Province, in western Argentina, where it became invasive. The natural enemy, Neochetina bruchi Hustache (Coleoptera: Curculionidae), was intentionally introduced in 1974 to control the weed. To assess the success of this CBC programme, a long-term post-release study was conducted. Between 1965 and 2023, we monitored plant coverage, estimated N. bruchi densities, and quantified the associated damage by reanalysing previously published data and incorporating new sampling. We also conducted an online survey to analyse public knowledge and perception about this programme. Water hyacinth coverage fluctuated from its first record in 1965 (maximum coverage 90%) until the control of germinated plants (coverage 0%) in 2018. The plant decline was accompanied by an increase in the weevil population. In our survey, out of 325 respondents only a small group of mostly middle-aged and elderly people knew that the restoration had been achieved through a management strategy and even fewer were aware of the biocontrol approach taken. Respondents who had a positive approach to biological control were more aware of the management plan than respondents who had neutral or negative opinions. Neochetina bruchi has played a key factor in the control of P. crassipes. The intrinsic dynamics of these populations, the dormant seed bank, and the lack of public awareness support the need for long post-release evaluations including outreach campaigns to make a sustainable successful management programme.
- Full Text:
- Date Issued: 2023
- Authors: Faltlhauser, Ana C , Jiménez, Nadia L , Righetti, Tomas , Visintin, Andrés M , Torrens, Javier , Salinas, Nicolás A , Mc Kay, Fernando , Hill, Martin P , Cordo, Hugo A , Sosa, Alejandro J
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/424828 , vital:72187 , xlink:href="https://doi.org/10.1111/eea.13355"
- Description: Several components of classical biological control (CBC) programmes are necessary to assess the success of the management strategy (e.g., post-release monitoring) and also help prevent reintroductions or resurgences of invasive species (e.g., public awareness). Water hyacinth, Pontederia (= Eichhornia) crassipes (Mart.) Solms (Pontederiaceae) is an aquatic plant naturally distributed in the north-eastern region of the Del Plata basin in Argentina. In the 1960s it was introduced into the Dique Los Sauces reservoir located outside of its native range in La Rioja Province, in western Argentina, where it became invasive. The natural enemy, Neochetina bruchi Hustache (Coleoptera: Curculionidae), was intentionally introduced in 1974 to control the weed. To assess the success of this CBC programme, a long-term post-release study was conducted. Between 1965 and 2023, we monitored plant coverage, estimated N. bruchi densities, and quantified the associated damage by reanalysing previously published data and incorporating new sampling. We also conducted an online survey to analyse public knowledge and perception about this programme. Water hyacinth coverage fluctuated from its first record in 1965 (maximum coverage 90%) until the control of germinated plants (coverage 0%) in 2018. The plant decline was accompanied by an increase in the weevil population. In our survey, out of 325 respondents only a small group of mostly middle-aged and elderly people knew that the restoration had been achieved through a management strategy and even fewer were aware of the biocontrol approach taken. Respondents who had a positive approach to biological control were more aware of the management plan than respondents who had neutral or negative opinions. Neochetina bruchi has played a key factor in the control of P. crassipes. The intrinsic dynamics of these populations, the dormant seed bank, and the lack of public awareness support the need for long post-release evaluations including outreach campaigns to make a sustainable successful management programme.
- Full Text:
- Date Issued: 2023
The photobleaching of the free and encapsulated metallic phthalocyanine and its effect on the photooxidation of simple molecules
- Fanchiotti, Brenda Gomes, Machado, Marcella Piffer Zamprogno, de Paula, Letícia Camilato, Durmuş, Mahmut, Nyokong, Tebello, da Silva, Gonçalves, da Silva, André Romero
- Authors: Fanchiotti, Brenda Gomes , Machado, Marcella Piffer Zamprogno , de Paula, Letícia Camilato , Durmuş, Mahmut , Nyokong, Tebello , da Silva, Gonçalves , da Silva, André Romero
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239687 , vital:50755 , xlink:href="https://doi.org/10.1016/j.jphotobiol.2016.10.007"
- Description: The photobleaching of an unsubstituted phthalocyanine (gallium(III) phthalocyanine chloride (GaPc)) and a substituted phthalocyanine (1,4-(tetrakis[4-(benzyloxy)phenoxy]phthalocyaninato) indium(III) chloride (InTBPPc)) was monitored for the free photosensitizers and for the phthalocyanines encapsulated into nanoparticles of PEGylated poly(D,L-lactide-co-glycolide) (PLGA-PEG). Phosphate-buffered solutions (PBS) and organic solutions of the free GaPc or the free InTBPPc, and suspensions of each encapsulated photosensitizer (2–15 μmol/L) were irradiated using a laser diode of 665 nm with a power of 1–104 mW and a light dose of 7.5 J/cm2. The relative absorbance (RA) of the free GaPc dissolved in 1-methyl-2-pyrrolidone (MP) decreased 8.4 times when the laser power increased from 1 mW to 104 mW. However, the free or encapsulated GaPc did not suffer the photobleaching in PBS solution. The RA values decreased 2.4 times and 22.2 times for the free InTBPPc dissolved in PBS solution and in dimethylformamide (DMF), respectively, but the encapsulated InTBPPc was only photobleached when the laser power was 104 mW at 8 μmol/L. The increase of the free GaPc concentration favored the photobleaching in MP until 8 μmol/L while the increase from 2 μmol/L to 5 μmol/L reduced the photodegradation in PBS solution. However, the photobleaching of the free InTBPPc in DMF or in PBS solution, and of each encapsulated photosensitizer was not influenced by increasing the concentration. The influence of the photobleaching on the capability of the free and encapsulated GaPc and InTBPPc to photooxidate the simple molecules was investigated monitoring the fluorescence of dimethylanthracene (DMA) and the tryptophan (Trp). Free InTBPPc was 2.0 and 1.8 times faster to photooxidate the DMA and Trp than it was the free GaPc, but the encapsulated GaPc was 3.4 times more efficient to photooxidize the Trp than it was the encapsulated InTBPPc due to the photodegradation suffered by the encapsulated InTBPPc. The participation of the singlet oxygen was confirmed with the sodium azide in the photobleaching of all free and encapsulated photosensitizer, and in the photooxidation of the DMA and Trp. The asymmetry of InTBPPc increased the solubility of the free compound, decreasing the aggregation state of the photosensitizer and favoring the photobleaching process. The encapsulation shows capability in decreasing the photobleaching of both photosensitizers but the confocal micrographs showed that the increase of the solubility favored the InTBPPc photobleaching during the acquisition of optical cross section. A novel low-symmetry A3B-type phthalocyanine annelated with a pyrazino[2,3-f]phenanthroline ring system and substituted with six solubilizing diisopropylphenoxy-groups (1) was synthesized by metalfree DBU-promoted cross-condensation of diiminoisoindolines derived from 4,5- bis(diisopropylphenoxy)phthalonitrile and pyrazino[2,3-f][1,10]phenanthroline-2,3-dicarbonitrile. The use of these particular precursors affords A3B phthalocyanine in 15% yield, while cross-condensation of the corresponding dinitriles yields only trace amounts of the target compound. Comparative studies of the A3B-type phthalocyanine and its symmetrical octa(diisopropylphenoxy)-substituted counterpart 2 reveal striking differences in the Q band regions of their UVevisible absorption (UVeVis) spectra, which could be readily rationalized through a comparison with calculated TD-DFT spectra. Since 1 can have two NH-tautomers with equivalent and non-equivalent NH-groups, and DFT calculations predict that the former tautomer is only 2.3 kcal/mol more stable than the latter one, a comprehensive analysis of 13C NMR spectra was carried out through the application of 1 He13C HMBC and HSQC techniques. It demonstrated that only the tautomer with equivalent NH-groups is present in solution.
- Full Text:
- Date Issued: 2016
- Authors: Fanchiotti, Brenda Gomes , Machado, Marcella Piffer Zamprogno , de Paula, Letícia Camilato , Durmuş, Mahmut , Nyokong, Tebello , da Silva, Gonçalves , da Silva, André Romero
- Date: 2016
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/239687 , vital:50755 , xlink:href="https://doi.org/10.1016/j.jphotobiol.2016.10.007"
- Description: The photobleaching of an unsubstituted phthalocyanine (gallium(III) phthalocyanine chloride (GaPc)) and a substituted phthalocyanine (1,4-(tetrakis[4-(benzyloxy)phenoxy]phthalocyaninato) indium(III) chloride (InTBPPc)) was monitored for the free photosensitizers and for the phthalocyanines encapsulated into nanoparticles of PEGylated poly(D,L-lactide-co-glycolide) (PLGA-PEG). Phosphate-buffered solutions (PBS) and organic solutions of the free GaPc or the free InTBPPc, and suspensions of each encapsulated photosensitizer (2–15 μmol/L) were irradiated using a laser diode of 665 nm with a power of 1–104 mW and a light dose of 7.5 J/cm2. The relative absorbance (RA) of the free GaPc dissolved in 1-methyl-2-pyrrolidone (MP) decreased 8.4 times when the laser power increased from 1 mW to 104 mW. However, the free or encapsulated GaPc did not suffer the photobleaching in PBS solution. The RA values decreased 2.4 times and 22.2 times for the free InTBPPc dissolved in PBS solution and in dimethylformamide (DMF), respectively, but the encapsulated InTBPPc was only photobleached when the laser power was 104 mW at 8 μmol/L. The increase of the free GaPc concentration favored the photobleaching in MP until 8 μmol/L while the increase from 2 μmol/L to 5 μmol/L reduced the photodegradation in PBS solution. However, the photobleaching of the free InTBPPc in DMF or in PBS solution, and of each encapsulated photosensitizer was not influenced by increasing the concentration. The influence of the photobleaching on the capability of the free and encapsulated GaPc and InTBPPc to photooxidate the simple molecules was investigated monitoring the fluorescence of dimethylanthracene (DMA) and the tryptophan (Trp). Free InTBPPc was 2.0 and 1.8 times faster to photooxidate the DMA and Trp than it was the free GaPc, but the encapsulated GaPc was 3.4 times more efficient to photooxidize the Trp than it was the encapsulated InTBPPc due to the photodegradation suffered by the encapsulated InTBPPc. The participation of the singlet oxygen was confirmed with the sodium azide in the photobleaching of all free and encapsulated photosensitizer, and in the photooxidation of the DMA and Trp. The asymmetry of InTBPPc increased the solubility of the free compound, decreasing the aggregation state of the photosensitizer and favoring the photobleaching process. The encapsulation shows capability in decreasing the photobleaching of both photosensitizers but the confocal micrographs showed that the increase of the solubility favored the InTBPPc photobleaching during the acquisition of optical cross section. A novel low-symmetry A3B-type phthalocyanine annelated with a pyrazino[2,3-f]phenanthroline ring system and substituted with six solubilizing diisopropylphenoxy-groups (1) was synthesized by metalfree DBU-promoted cross-condensation of diiminoisoindolines derived from 4,5- bis(diisopropylphenoxy)phthalonitrile and pyrazino[2,3-f][1,10]phenanthroline-2,3-dicarbonitrile. The use of these particular precursors affords A3B phthalocyanine in 15% yield, while cross-condensation of the corresponding dinitriles yields only trace amounts of the target compound. Comparative studies of the A3B-type phthalocyanine and its symmetrical octa(diisopropylphenoxy)-substituted counterpart 2 reveal striking differences in the Q band regions of their UVevisible absorption (UVeVis) spectra, which could be readily rationalized through a comparison with calculated TD-DFT spectra. Since 1 can have two NH-tautomers with equivalent and non-equivalent NH-groups, and DFT calculations predict that the former tautomer is only 2.3 kcal/mol more stable than the latter one, a comprehensive analysis of 13C NMR spectra was carried out through the application of 1 He13C HMBC and HSQC techniques. It demonstrated that only the tautomer with equivalent NH-groups is present in solution.
- Full Text:
- Date Issued: 2016
Synthesis and evaluation of substituted 4-(N-benzylamino)cinnamate esters as potential anti-cancer agents and HIV-1 integrase inhibitors
- Faridoon, H, Edkins, Adrienne L, Isaacs, Michelle, Mnkandhla, Dumisani, Hoppe, Heinrich C, Kaye, Perry T
- Authors: Faridoon, H , Edkins, Adrienne L , Isaacs, Michelle , Mnkandhla, Dumisani , Hoppe, Heinrich C , Kaye, Perry T
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66289 , vital:28929 , https://doi.org/10.1016/j.bmcl.2016.05.023
- Description: publisher version , Encouraging selectivity and low micromolar activity against HeLa cervical carcinoma (IC50 ⩾ 3.0 μM) and the aggressive MDA-MB-231 triple negative breast carcinoma (IC50 ⩾ 9.6 μM) cell lines has been exhibited by a number of readily accessible 4-(N-benzylamino)cinnamate esters. The potential of the ligands as HIV-1 integrase inhibitors has also been examined.
- Full Text: false
- Date Issued: 2016
- Authors: Faridoon, H , Edkins, Adrienne L , Isaacs, Michelle , Mnkandhla, Dumisani , Hoppe, Heinrich C , Kaye, Perry T
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66289 , vital:28929 , https://doi.org/10.1016/j.bmcl.2016.05.023
- Description: publisher version , Encouraging selectivity and low micromolar activity against HeLa cervical carcinoma (IC50 ⩾ 3.0 μM) and the aggressive MDA-MB-231 triple negative breast carcinoma (IC50 ⩾ 9.6 μM) cell lines has been exhibited by a number of readily accessible 4-(N-benzylamino)cinnamate esters. The potential of the ligands as HIV-1 integrase inhibitors has also been examined.
- Full Text: false
- Date Issued: 2016
Age and growth of Cape stumpnose Rhabdosargus holubi (Pisces: Sparidae) in the Eastern Cape, South Africa
- Farthing, Matthew William, James, Nicola Caroline, Potts, Warren M
- Authors: Farthing, Matthew William , James, Nicola Caroline , Potts, Warren M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/122891 , vital:35365 , https://doi.org/10.2989/1814232X.2016.1156577
- Description: Rhabdosargus holubi (Steindachner, 1881) is a small (maximum size = 450 mm total length; Heemstra and Heemstra 2004) sparid that is distributed along the south-east coast of Africa from St Helena Bay, South Africa, to Maputo, Mozambique (Götz and Cowley 2013). Spawning occurs in the nearshore marine environment primarily during winter, specifically May–August in KwaZulu-Natal (KZN) (Wallace 1975) and July–February in the South-Eastern Cape (Whitfield 1998). Individuals reach 50% sexual maturity at approximately 150 mm standard length (SL) in the Eastern Cape (Whitfield 1998). The early life stages are transported by the south-westward-flowing Agulhas Current, and recruit as post-flexion larvae and early juveniles into estuaries during late winter and early summer (Blaber 1974). The warm temperatures and high nutrient levels in estuaries favour fast growth (Blaber 1973a), and fish spend their first year of life in these environments, migrating back out to sea after reaching approximately 120 mm SL. Some individuals remain trapped in closed estuaries, where they may reach sizes greater than 200 mm SL (James et al. 2007a). Rhabdosargus holubi is the dominant estuarine-dependent marine teleost species recorded in permanently open and temporarily open/closed estuaries in the warm-temperate region, which spans the south, south-east and east coast of South Africa (Harrison 2005). The species is also an important component of the linefishery in many SouthAfrican estuaries (10–15.6% by number) (Pradervand and Baird 2002), particularly in Eastern Cape estuaries (Cowley et al. 2003). These figures underestimate the presence of R. holubi, as most individuals making use of estuaries are young, feeding predominately on filamentous macroalgae and diatom flora, and are generally too small to be caught with hook and line (De Wet and Marais 1990). James et al. (2007b) showed that R. holubi made up 34–92% of the annual seine-net catch in the East Kleinemonde Estuary. Rhabdosargus holubi is also important in the KZN shorebased linefishery, representing 4.6% of the total landed catch (Dunlop and Mann 2012).
- Full Text:
- Date Issued: 2016
- Authors: Farthing, Matthew William , James, Nicola Caroline , Potts, Warren M
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/122891 , vital:35365 , https://doi.org/10.2989/1814232X.2016.1156577
- Description: Rhabdosargus holubi (Steindachner, 1881) is a small (maximum size = 450 mm total length; Heemstra and Heemstra 2004) sparid that is distributed along the south-east coast of Africa from St Helena Bay, South Africa, to Maputo, Mozambique (Götz and Cowley 2013). Spawning occurs in the nearshore marine environment primarily during winter, specifically May–August in KwaZulu-Natal (KZN) (Wallace 1975) and July–February in the South-Eastern Cape (Whitfield 1998). Individuals reach 50% sexual maturity at approximately 150 mm standard length (SL) in the Eastern Cape (Whitfield 1998). The early life stages are transported by the south-westward-flowing Agulhas Current, and recruit as post-flexion larvae and early juveniles into estuaries during late winter and early summer (Blaber 1974). The warm temperatures and high nutrient levels in estuaries favour fast growth (Blaber 1973a), and fish spend their first year of life in these environments, migrating back out to sea after reaching approximately 120 mm SL. Some individuals remain trapped in closed estuaries, where they may reach sizes greater than 200 mm SL (James et al. 2007a). Rhabdosargus holubi is the dominant estuarine-dependent marine teleost species recorded in permanently open and temporarily open/closed estuaries in the warm-temperate region, which spans the south, south-east and east coast of South Africa (Harrison 2005). The species is also an important component of the linefishery in many SouthAfrican estuaries (10–15.6% by number) (Pradervand and Baird 2002), particularly in Eastern Cape estuaries (Cowley et al. 2003). These figures underestimate the presence of R. holubi, as most individuals making use of estuaries are young, feeding predominately on filamentous macroalgae and diatom flora, and are generally too small to be caught with hook and line (De Wet and Marais 1990). James et al. (2007b) showed that R. holubi made up 34–92% of the annual seine-net catch in the East Kleinemonde Estuary. Rhabdosargus holubi is also important in the KZN shorebased linefishery, representing 4.6% of the total landed catch (Dunlop and Mann 2012).
- Full Text:
- Date Issued: 2016
Stromatolite microbial communities as a source of new bioactive secondary metabolites
- Flatt, P M, Damarjanan, C, Isamonger, E, Kalinski, Jarmo-Charles J, Dorrington, Rosemary A, McPhail, Kerry L
- Authors: Flatt, P M , Damarjanan, C , Isamonger, E , Kalinski, Jarmo-Charles J , Dorrington, Rosemary A , McPhail, Kerry L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/65871 , vital:28851 , https://doi.org/10.1055/s-0036-1596638
- Description: publisher version , Stromatolites represent some of the earliest microbial communities on Earth. They are formed by accretion and precipitation of layered calcium carbonate structures that result from the metabolic activity of complex microbial communities and the geochemical conditions of their environment. Modern stromatolite communities include aerobic heterotrophs, sulphide-oxidizing bacteria, sulphate-reducing bacteria, fermentative bacteria and cyanobacteria. Phylogenetic analyses revealed the presence of new and known cyanobacterial taxa related to known producers of biologically active secondary metabolites in tufa stromatolites along the South African southeast coast [1]. Prompted us to investigate their potential for producing novel bioactive secondary metabolites. A series of three tide pools provided the opportunity to collect stromatolites along a vertical transect from pool A (highest elevation, low nitrogen input, fresh water), pool B (within high tide zone, brackish water) and pool C (within tidal zone). The microbial community in pool A is particularly distinct. Chemical extracts of stromatolites from different pools have been profiled by LC-MS/MS and the data subjected to molecular spectral networking using the GnPS platform [2] in order to establish the diversity and biological potential of the microbial metabolome that is being expressed within each of these microhabitats. Correlation of the phylogenetic and secondary metabolomic data is expected to guide the isolation of new natural products with biomedical relevance.
- Full Text: false
- Date Issued: 2016
- Authors: Flatt, P M , Damarjanan, C , Isamonger, E , Kalinski, Jarmo-Charles J , Dorrington, Rosemary A , McPhail, Kerry L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/65871 , vital:28851 , https://doi.org/10.1055/s-0036-1596638
- Description: publisher version , Stromatolites represent some of the earliest microbial communities on Earth. They are formed by accretion and precipitation of layered calcium carbonate structures that result from the metabolic activity of complex microbial communities and the geochemical conditions of their environment. Modern stromatolite communities include aerobic heterotrophs, sulphide-oxidizing bacteria, sulphate-reducing bacteria, fermentative bacteria and cyanobacteria. Phylogenetic analyses revealed the presence of new and known cyanobacterial taxa related to known producers of biologically active secondary metabolites in tufa stromatolites along the South African southeast coast [1]. Prompted us to investigate their potential for producing novel bioactive secondary metabolites. A series of three tide pools provided the opportunity to collect stromatolites along a vertical transect from pool A (highest elevation, low nitrogen input, fresh water), pool B (within high tide zone, brackish water) and pool C (within tidal zone). The microbial community in pool A is particularly distinct. Chemical extracts of stromatolites from different pools have been profiled by LC-MS/MS and the data subjected to molecular spectral networking using the GnPS platform [2] in order to establish the diversity and biological potential of the microbial metabolome that is being expressed within each of these microhabitats. Correlation of the phylogenetic and secondary metabolomic data is expected to guide the isolation of new natural products with biomedical relevance.
- Full Text: false
- Date Issued: 2016
Economic evaluation of water loss saving due to the biological control of water hyacinth at New Year’s Dam, Eastern Cape province, South Africa
- Fraser, Gavin C G, Hill, Martin P, Martin, J A
- Authors: Fraser, Gavin C G , Hill, Martin P , Martin, J A
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/69341 , vital:29502 , https://doi.org/10.2989/16085914.2016.1151765
- Description: Water hyacinth Eichhornia crassipes is considered the most damaging aquatic weed in the world. However, few studies have quantified the impact of this weed economically and ecologically, and even fewer studies have quantified the benefits of its control. This paper focuses on water loss saving as the benefit derived from biological control of this plant between 1990 and 2013 at New Year’s Dam, Alicedale, Eastern Cape, South Africa. Estimates of water loss due to evapotranspiration from water hyacinth vary significantly; therefore, the study used three different rates, high, medium and low. A conservative raw agriculture value of R 0.26 per m3 was used to calculate the benefits derived by the water saved. The present benefit and cost values were determined using 10% and 5% discount rates. The benefit/cost ratio at the low evapotranspiration rate was less than one, implying that biological control was not economically viable but, at the higher evapotranspiration rates, the return justified the costs of biological control. However, at the marginal value product of water, the inclusion of the costs of damage to infrastructure, or the adverse effects of water hyacinth on biodiversity, would justify the use of biological control, even at the low transpiration rate.
- Full Text: false
- Date Issued: 2016
- Authors: Fraser, Gavin C G , Hill, Martin P , Martin, J A
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/69341 , vital:29502 , https://doi.org/10.2989/16085914.2016.1151765
- Description: Water hyacinth Eichhornia crassipes is considered the most damaging aquatic weed in the world. However, few studies have quantified the impact of this weed economically and ecologically, and even fewer studies have quantified the benefits of its control. This paper focuses on water loss saving as the benefit derived from biological control of this plant between 1990 and 2013 at New Year’s Dam, Alicedale, Eastern Cape, South Africa. Estimates of water loss due to evapotranspiration from water hyacinth vary significantly; therefore, the study used three different rates, high, medium and low. A conservative raw agriculture value of R 0.26 per m3 was used to calculate the benefits derived by the water saved. The present benefit and cost values were determined using 10% and 5% discount rates. The benefit/cost ratio at the low evapotranspiration rate was less than one, implying that biological control was not economically viable but, at the higher evapotranspiration rates, the return justified the costs of biological control. However, at the marginal value product of water, the inclusion of the costs of damage to infrastructure, or the adverse effects of water hyacinth on biodiversity, would justify the use of biological control, even at the low transpiration rate.
- Full Text: false
- Date Issued: 2016
Developing a Multi Platform Countermeasure to Ensure a Secure Home
- Frieslaar, Ibraheem, Irwin, Barry V W
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/427772 , vital:72461 , https://www.researchgate.net/profile/Ibraheem-Fries-laar/publication/312219190_Developing_a_Multi_Platform_Countermeasure_to_Ensure_a_Secure_Home/links/587747d508ae8fce492fb5e2/Developing-a-Multi-Platform-Countermeasure-to-Ensure-a-Secure-Home.pdf
- Description: This research proposes an investigation into the side channel analysis attacks against the AES algorithm on high powered devices. Currently the research field into this aspect is fairly new and there is room for more information to be discovered. This research proposes using a Raspberry Pi in conjunction with a Software Defined Radio to capture electromagnetic emanations in the low and high frequency domains. Two well-known side channel attacks will be used to recover the secret information based on the electromagnetic emanations. Furthermore, this research proposes investigating into a possible software countermeasure by using the high-powered devices features such as multi-threading.
- Full Text:
- Date Issued: 2016
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/427772 , vital:72461 , https://www.researchgate.net/profile/Ibraheem-Fries-laar/publication/312219190_Developing_a_Multi_Platform_Countermeasure_to_Ensure_a_Secure_Home/links/587747d508ae8fce492fb5e2/Developing-a-Multi-Platform-Countermeasure-to-Ensure-a-Secure-Home.pdf
- Description: This research proposes an investigation into the side channel analysis attacks against the AES algorithm on high powered devices. Currently the research field into this aspect is fairly new and there is room for more information to be discovered. This research proposes using a Raspberry Pi in conjunction with a Software Defined Radio to capture electromagnetic emanations in the low and high frequency domains. Two well-known side channel attacks will be used to recover the secret information based on the electromagnetic emanations. Furthermore, this research proposes investigating into a possible software countermeasure by using the high-powered devices features such as multi-threading.
- Full Text:
- Date Issued: 2016
A multi-threading approach to secure VERIFYPIN
- Frieslaar, Ibraheem, Irwin, Barry V W
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429244 , vital:72570 , https://ieeexplore.ieee.org/abstract/document/7802952
- Description: This research investigates the use of a multi-threaded framework as a software countermeasure mechanism to prevent attacks on the verifypin process in a pin-acceptance program. The implementation comprises of using various mathematical operations along side a pin-acceptance program in a multi-threaded environment. These threads are inserted randomly on each execution of the program to create confusion for the attacker. Moreover, the research proposes a more improved version of the pin-acceptance program by segmenting the pro-gram. The conventional approach is to check each character one at a time. This research takes the verifying process and separates each character check into its individual thread. Furthermore, the order of each verified thread is randomised. This further assists in the obfuscation of the process where the system checks for a correct character. Finally, the research demonstrates it is able to be more secure than the conventional countermeasures of random time delays and insertion of dummy code.
- Full Text:
- Date Issued: 2016
- Authors: Frieslaar, Ibraheem , Irwin, Barry V W
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/429244 , vital:72570 , https://ieeexplore.ieee.org/abstract/document/7802952
- Description: This research investigates the use of a multi-threaded framework as a software countermeasure mechanism to prevent attacks on the verifypin process in a pin-acceptance program. The implementation comprises of using various mathematical operations along side a pin-acceptance program in a multi-threaded environment. These threads are inserted randomly on each execution of the program to create confusion for the attacker. Moreover, the research proposes a more improved version of the pin-acceptance program by segmenting the pro-gram. The conventional approach is to check each character one at a time. This research takes the verifying process and separates each character check into its individual thread. Furthermore, the order of each verified thread is randomised. This further assists in the obfuscation of the process where the system checks for a correct character. Finally, the research demonstrates it is able to be more secure than the conventional countermeasures of random time delays and insertion of dummy code.
- Full Text:
- Date Issued: 2016
Evaluating the multi-threading countermeasure
- Frieslaar, Ibrahim, Irwin, Barry V W
- Authors: Frieslaar, Ibrahim , Irwin, Barry V W
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/428352 , vital:72505 , https://researchspace.csir.co.za/dspace/bitstream/handle/10204/9041/Frieslaar_2016.pdf?sequence=1andisAllowed=y
- Description: This research investigates the resistance of the multi-threaded coun-termeasure to side channel analysis (SCA) attacks. The multi-threaded countermeasure is attacked using the Correlation Power Analysis (CPA) and template attacks. Additionally, it is compared to the existing hiding countermeasure. Furthermore, additional signal processing techniques are used to increase the attack success ratio. It is demon-strated that the multi-threaded countermeasure is able to outperform the existing countermeasures by withstanding the CPA and template at-tacks. Furthermore, the multi-threaded countermeasure is unaffected by the elastic alignment and filtering techniques as opposed to the existing countermeasures. The research concludes that the multithreaded coun-termeasure is indeed a secure implementation to mitigate SCA attacks.
- Full Text:
- Date Issued: 2016
- Authors: Frieslaar, Ibrahim , Irwin, Barry V W
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/428352 , vital:72505 , https://researchspace.csir.co.za/dspace/bitstream/handle/10204/9041/Frieslaar_2016.pdf?sequence=1andisAllowed=y
- Description: This research investigates the resistance of the multi-threaded coun-termeasure to side channel analysis (SCA) attacks. The multi-threaded countermeasure is attacked using the Correlation Power Analysis (CPA) and template attacks. Additionally, it is compared to the existing hiding countermeasure. Furthermore, additional signal processing techniques are used to increase the attack success ratio. It is demon-strated that the multi-threaded countermeasure is able to outperform the existing countermeasures by withstanding the CPA and template at-tacks. Furthermore, the multi-threaded countermeasure is unaffected by the elastic alignment and filtering techniques as opposed to the existing countermeasures. The research concludes that the multithreaded coun-termeasure is indeed a secure implementation to mitigate SCA attacks.
- Full Text:
- Date Issued: 2016
A cytotoxic pentadecapeptide from a South African Didemnid tunicate
- Gallegos, D, Serrill, J, Parker-Nance, Shirley, Dorrington, Rosemary A, Ishmael, J, McPhail, Kerry L
- Authors: Gallegos, D , Serrill, J , Parker-Nance, Shirley , Dorrington, Rosemary A , Ishmael, J , McPhail, Kerry L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/65935 , vital:28863 , https://doi.org/10.1055/s-0036-1596683
- Description: publisher version , The rate of discovery of new natural product chemical entities has plateaued, and unique populations of endemic, biologically diverse sessile marine organisms represent increasingly critical opportunities to discover new chemistry. Discovery of the mandelalides [1] as potent inhibitors of cancer cell growth from the new South African tunicate Lissoclinum mandelai is an example of the diverse suites of metabolites with potent biological activities that have been isolated from tunicates and other filter-feeding sessile marine organisms that house complex microbial consortia. Further investigation of archived and new tunicate collections from Algoa Bay, South Africa, has revealed a group of didemnid tunicates with an unusual gelatinous morphology similar to Lissoclinum mandelai. Using a bioassay-guided isolation approach, a new “gelatinous” species of the genus Didemnum has yielded a cytotoxic pentadecapeptide with a molecular mass of 1603.7688 Da, comprising fifteen residues including both proteinogenic and non-proteinogenic amino acids. The pure compound inhibited both HeLa cervical cancer and NCI-H460 non-small cell lung cancer cell lines when tested at 30 nM in preliminary assays against cells seeded at low densities. Inhibition of cancer cells at low starting density may be indicative of an anti-proliferative mechanism of action. The compound did not show antibacterial activity against Vibrio cholera. Didemnin B and its clinically approved analogue dehydrodidemnin B (plitidepsin, Aplidin®) [2, 3] are important macrocyclic depsipeptides from a didemnid tunicate. The pentadecapeptide reported here provides justification for our continued investigation of unique, endemic didemnid tunicates from South Africa as a source of new macrocyclic natural products with cytotoxic, anti-viral or antimicrobial activity. , We acknowledge the South African government for permission to collect the subject tunicate (Collection Permit No. 278 RES2013/43)
- Full Text: false
- Date Issued: 2016
- Authors: Gallegos, D , Serrill, J , Parker-Nance, Shirley , Dorrington, Rosemary A , Ishmael, J , McPhail, Kerry L
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/65935 , vital:28863 , https://doi.org/10.1055/s-0036-1596683
- Description: publisher version , The rate of discovery of new natural product chemical entities has plateaued, and unique populations of endemic, biologically diverse sessile marine organisms represent increasingly critical opportunities to discover new chemistry. Discovery of the mandelalides [1] as potent inhibitors of cancer cell growth from the new South African tunicate Lissoclinum mandelai is an example of the diverse suites of metabolites with potent biological activities that have been isolated from tunicates and other filter-feeding sessile marine organisms that house complex microbial consortia. Further investigation of archived and new tunicate collections from Algoa Bay, South Africa, has revealed a group of didemnid tunicates with an unusual gelatinous morphology similar to Lissoclinum mandelai. Using a bioassay-guided isolation approach, a new “gelatinous” species of the genus Didemnum has yielded a cytotoxic pentadecapeptide with a molecular mass of 1603.7688 Da, comprising fifteen residues including both proteinogenic and non-proteinogenic amino acids. The pure compound inhibited both HeLa cervical cancer and NCI-H460 non-small cell lung cancer cell lines when tested at 30 nM in preliminary assays against cells seeded at low densities. Inhibition of cancer cells at low starting density may be indicative of an anti-proliferative mechanism of action. The compound did not show antibacterial activity against Vibrio cholera. Didemnin B and its clinically approved analogue dehydrodidemnin B (plitidepsin, Aplidin®) [2, 3] are important macrocyclic depsipeptides from a didemnid tunicate. The pentadecapeptide reported here provides justification for our continued investigation of unique, endemic didemnid tunicates from South Africa as a source of new macrocyclic natural products with cytotoxic, anti-viral or antimicrobial activity. , We acknowledge the South African government for permission to collect the subject tunicate (Collection Permit No. 278 RES2013/43)
- Full Text: false
- Date Issued: 2016
Dynamic changes of soil surface organic carbon under different mulching practices in citrus orchards on sloping land
- Gu, Chiming, Liu, Yi, Mohamed, Ibrahim, Zhang, Runhua, Wang, Xiao, Nie, Xinxin, Jiang, Min, Brooks, Margot, Chen, Fang, Li, Zhiguo
- Authors: Gu, Chiming , Liu, Yi , Mohamed, Ibrahim , Zhang, Runhua , Wang, Xiao , Nie, Xinxin , Jiang, Min , Brooks, Margot , Chen, Fang , Li, Zhiguo
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/${Handle} , vital:28997 , ISSN 0168384 , https://doi.org/10.1371/journal.pone.0168384
- Description: Publisher version , Mulching management has been used in many places all over the world to improve agricultural sustainability. However, the cycling of carbon in the soil under applications of mulch on sloping arable land is not yet fully understood. A four-year field experiment was carried out in Xiaofuling watershed of Danjiangkou reservoir in China. The object was to evaluate the effects of the application of straw mulch (ST) and grass mulch (GT) on dynamic changes in soil organic carbon and its fractions. Results showed that mulch applied on the soil surface increased the contents of SOC and its active fractions in the soil. Compared to the control without cover (CK), ST and GT treatments increased the contents of SOC, LOC, DOC, POC and EOC by 14.73%, 16.5%, 22.5%, 41.5% and 21%, respectively, in the 0–40 cm soil layer, and by 17%, 14%, 19%, and 30%, respectively, in the 0–100 cm soil layer. The contents of organic carbon and its active fractions decreased with increasing soil depth in all of the treatments. SOC was accumulated in the period of December to the following March. The contents of soil DOC and LOC were high in January to March, while the contents of soil POC and EOC were high in June to September. The relative contents of soil organic carbon fractions were POC > EOC > LOC > DOC over the four years. Straw mulching had no significant effect on the changes in soil organic carbon active fractions during the different periods. Based on this long-term field experiment in Danjiangkou reservoir, we found that straw mulching had a significant effect on soil, increasing SOC content and stock in slopping arable land, and that live grass mulching was more effective than rice straw mulching. We discuss possible optimal periods for the implementation of mulching practices on sloping land.
- Full Text:
- Date Issued: 2016
- Authors: Gu, Chiming , Liu, Yi , Mohamed, Ibrahim , Zhang, Runhua , Wang, Xiao , Nie, Xinxin , Jiang, Min , Brooks, Margot , Chen, Fang , Li, Zhiguo
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/${Handle} , vital:28997 , ISSN 0168384 , https://doi.org/10.1371/journal.pone.0168384
- Description: Publisher version , Mulching management has been used in many places all over the world to improve agricultural sustainability. However, the cycling of carbon in the soil under applications of mulch on sloping arable land is not yet fully understood. A four-year field experiment was carried out in Xiaofuling watershed of Danjiangkou reservoir in China. The object was to evaluate the effects of the application of straw mulch (ST) and grass mulch (GT) on dynamic changes in soil organic carbon and its fractions. Results showed that mulch applied on the soil surface increased the contents of SOC and its active fractions in the soil. Compared to the control without cover (CK), ST and GT treatments increased the contents of SOC, LOC, DOC, POC and EOC by 14.73%, 16.5%, 22.5%, 41.5% and 21%, respectively, in the 0–40 cm soil layer, and by 17%, 14%, 19%, and 30%, respectively, in the 0–100 cm soil layer. The contents of organic carbon and its active fractions decreased with increasing soil depth in all of the treatments. SOC was accumulated in the period of December to the following March. The contents of soil DOC and LOC were high in January to March, while the contents of soil POC and EOC were high in June to September. The relative contents of soil organic carbon fractions were POC > EOC > LOC > DOC over the four years. Straw mulching had no significant effect on the changes in soil organic carbon active fractions during the different periods. Based on this long-term field experiment in Danjiangkou reservoir, we found that straw mulching had a significant effect on soil, increasing SOC content and stock in slopping arable land, and that live grass mulching was more effective than rice straw mulching. We discuss possible optimal periods for the implementation of mulching practices on sloping land.
- Full Text:
- Date Issued: 2016
Distribution and ecological assessment of heavy metals in irrigation channel sediments in a typical rural area of south China
- Gu, Chiming, Liu, Yi, Li, Zhiguo, Mohamed, Ibrahim, Zhang, Ronghua, Brooks, Margot, Chen, Fang
- Authors: Gu, Chiming , Liu, Yi , Li, Zhiguo , Mohamed, Ibrahim , Zhang, Ronghua , Brooks, Margot , Chen, Fang
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66924 , vital:29000 , ISSN 0925-8574 , https://doi.org/10.1016/j.ecoleng.2016.01.054
- Description: Publisher version , Elevated levels of heavy metals in sediments of irrigation channels can pose risks for crops and livestock, as well as for human health. In this study sediment samples were collected from the irrigation channel in a typical rural area of south China, and digested, in order to analyze their contents for the presence of heavy metals Cu, Zn, Pb, Cr, Cd, and Ni, as well as the non-metal As, to assess total concentrations and pollution levels. The pollution load index and potential ecological risk index of these elements were utilized to assess contamination levels and ecotoxicity. Our results showed that the concentrations of the 7 elements were in the order of Zn > Ni > Cr > Cu > As > Pb > Cd. With the exception of Cr and Pb, concentrations of elements were higher than their background in soil, especially for Cd (1.79 mg kg−1), As (99.61 mg kg−1) and Ni (142.62 mg kg−1), which were 18.49, 8.89 and 5.30 times their background concentrations, respectively. The whole sampled zone was characterized by medium pollution and had a very high potential ecological risk. The area of arable land presented a medium pollution risk, while areas near to the path or road showed high risk of pollution. The predominant contributors to elevated ecological risk for the whole zone were Cd and As.
- Full Text: false
- Date Issued: 2016
- Authors: Gu, Chiming , Liu, Yi , Li, Zhiguo , Mohamed, Ibrahim , Zhang, Ronghua , Brooks, Margot , Chen, Fang
- Date: 2016
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/66924 , vital:29000 , ISSN 0925-8574 , https://doi.org/10.1016/j.ecoleng.2016.01.054
- Description: Publisher version , Elevated levels of heavy metals in sediments of irrigation channels can pose risks for crops and livestock, as well as for human health. In this study sediment samples were collected from the irrigation channel in a typical rural area of south China, and digested, in order to analyze their contents for the presence of heavy metals Cu, Zn, Pb, Cr, Cd, and Ni, as well as the non-metal As, to assess total concentrations and pollution levels. The pollution load index and potential ecological risk index of these elements were utilized to assess contamination levels and ecotoxicity. Our results showed that the concentrations of the 7 elements were in the order of Zn > Ni > Cr > Cu > As > Pb > Cd. With the exception of Cr and Pb, concentrations of elements were higher than their background in soil, especially for Cd (1.79 mg kg−1), As (99.61 mg kg−1) and Ni (142.62 mg kg−1), which were 18.49, 8.89 and 5.30 times their background concentrations, respectively. The whole sampled zone was characterized by medium pollution and had a very high potential ecological risk. The area of arable land presented a medium pollution risk, while areas near to the path or road showed high risk of pollution. The predominant contributors to elevated ecological risk for the whole zone were Cd and As.
- Full Text: false
- Date Issued: 2016
South Africa in the Antarctic Circumnavigation Expedition: a multi-institutional and interdisciplinary scientific project
- Halo, Issufo, Dorrington, Rosemary A, Bornman, Thomas G, De Villiers, Stephanie, Fawcett, Sarah
- Authors: Halo, Issufo , Dorrington, Rosemary A , Bornman, Thomas G , De Villiers, Stephanie , Fawcett, Sarah
- Date: 2016
- Language: English
- Type: article
- Identifier: http://hdl.handle.net/10962/65428 , vital:28790 , https://doi.org/10.17159/sajs.2016/a0173
- Description: publisher version , The polar regions are more critically affected by climate change than any other region on our planet.1,2 On the Antarctic continent and in its surrounding oceans, the effects of climate change are likely to be dramatic,3 and include largescale catastrophic ice melt, loss of habitat and biodiversity, and global sea level rise. The ‘Southern Ocean’ refers to the region where Atlantic, Indian and Pacific Ocean waters come together to encircle Antarctica. These waters connect the different ocean basins by linking the shallow and deep limbs of the global ocean current system (‘overturning circulation’) and play a critical role in storing and distributing heat and carbon dioxide (CO2 ). The Southern Ocean thus regulates not only the climate of the Antarctic, but of the entire earth system.1,4 By extension, the capacity of the global ocean to ameliorate earth’s changing climate is strongly controlled by the Southern Ocean. Marine phytoplankton (microscopic plants inhabiting the sunlit upper ocean) convert CO2 (an inorganic form of carbon) dissolved in surface waters into organic carbon through photosynthesis. This organic carbon fuels upper trophic levels such as fish, mammals and birds, and a portion sinks into the deep ocean where it remains stored for hundreds to thousands of years. This mechanism, which lowers the atmospheric concentration of CO2 , is termed the ‘biological pump’.5 The efficiency of the global ocean’s biological pump is currently limited by the Southern Ocean, where the macronutrients (nitrate and phosphate) required for photosynthesis are never fully consumed in surface waters. In theory, increased consumption of these nutrients could drive higher organic carbon removal to the deep ocean, enhancing the oceanic uptake of atmospheric CO2 . Indeed, more complete consumption of Southern Ocean nutrients is a leading hypothesis for the decrease in atmospheric CO2 that characterised the ice ages.6 Despite the global importance of the Southern Ocean, knowledge of the controls on and interactions among the physical, chemical and biological processes operating in Antarctic ecosystems is limited, largely because of a scarcity of in-situ observational data, compounded by the challenge of integrating siloed scientific fields. Given predictions that diverse aspects of Southern Ocean physics and carbon biogeochemistry are likely to change in the coming decades, a transdisciplinary approach to studying Antarctic systems is critical.
- Full Text:
- Date Issued: 2016
- Authors: Halo, Issufo , Dorrington, Rosemary A , Bornman, Thomas G , De Villiers, Stephanie , Fawcett, Sarah
- Date: 2016
- Language: English
- Type: article
- Identifier: http://hdl.handle.net/10962/65428 , vital:28790 , https://doi.org/10.17159/sajs.2016/a0173
- Description: publisher version , The polar regions are more critically affected by climate change than any other region on our planet.1,2 On the Antarctic continent and in its surrounding oceans, the effects of climate change are likely to be dramatic,3 and include largescale catastrophic ice melt, loss of habitat and biodiversity, and global sea level rise. The ‘Southern Ocean’ refers to the region where Atlantic, Indian and Pacific Ocean waters come together to encircle Antarctica. These waters connect the different ocean basins by linking the shallow and deep limbs of the global ocean current system (‘overturning circulation’) and play a critical role in storing and distributing heat and carbon dioxide (CO2 ). The Southern Ocean thus regulates not only the climate of the Antarctic, but of the entire earth system.1,4 By extension, the capacity of the global ocean to ameliorate earth’s changing climate is strongly controlled by the Southern Ocean. Marine phytoplankton (microscopic plants inhabiting the sunlit upper ocean) convert CO2 (an inorganic form of carbon) dissolved in surface waters into organic carbon through photosynthesis. This organic carbon fuels upper trophic levels such as fish, mammals and birds, and a portion sinks into the deep ocean where it remains stored for hundreds to thousands of years. This mechanism, which lowers the atmospheric concentration of CO2 , is termed the ‘biological pump’.5 The efficiency of the global ocean’s biological pump is currently limited by the Southern Ocean, where the macronutrients (nitrate and phosphate) required for photosynthesis are never fully consumed in surface waters. In theory, increased consumption of these nutrients could drive higher organic carbon removal to the deep ocean, enhancing the oceanic uptake of atmospheric CO2 . Indeed, more complete consumption of Southern Ocean nutrients is a leading hypothesis for the decrease in atmospheric CO2 that characterised the ice ages.6 Despite the global importance of the Southern Ocean, knowledge of the controls on and interactions among the physical, chemical and biological processes operating in Antarctic ecosystems is limited, largely because of a scarcity of in-situ observational data, compounded by the challenge of integrating siloed scientific fields. Given predictions that diverse aspects of Southern Ocean physics and carbon biogeochemistry are likely to change in the coming decades, a transdisciplinary approach to studying Antarctic systems is critical.
- Full Text:
- Date Issued: 2016
Utilizing gesture recognition and Ethernet AVB for distributed surround sound control
- Hedges, Mitchell, Foss, Richard
- Authors: Hedges, Mitchell , Foss, Richard
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426816 , vital:72393 , https://www.aes.org/e-lib/online/browse.cfm?elib=17540
- Description: Gesture recognition has become a preferred approach to the control of various systems. This allows users of the system to interact without having to use any controls or equipment. This paper investigates the use of gesture recognition in order to select and transport audio tracks over an Ethernet AVB network to speaker endpoints. The research uses equipment that is commercially available and relatively cost efficient. The endpoints receive audio samples that are encapsulated within network packets and processes them. The audio tracks are mixed at the endpoints according to gain ratios that will change and be different for each endpoint.
- Full Text:
- Date Issued: 2014
- Authors: Hedges, Mitchell , Foss, Richard
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/426816 , vital:72393 , https://www.aes.org/e-lib/online/browse.cfm?elib=17540
- Description: Gesture recognition has become a preferred approach to the control of various systems. This allows users of the system to interact without having to use any controls or equipment. This paper investigates the use of gesture recognition in order to select and transport audio tracks over an Ethernet AVB network to speaker endpoints. The research uses equipment that is commercially available and relatively cost efficient. The endpoints receive audio samples that are encapsulated within network packets and processes them. The audio tracks are mixed at the endpoints according to gain ratios that will change and be different for each endpoint.
- Full Text:
- Date Issued: 2014