Biodiversity of Salmonella strains isolated from selected water sources and wastewater discharge points in the Easern Cape Province of South Africa
- Authors: Mafu, Nwabisa Charity
- Date: 2008
- Subjects: Biodiversity conservation -- South Africa -- Eastern Cape , Biodiversity -- South Africa -- Eastern Cape , Salmonella typhimurium
- Language: English
- Type: Thesis , Masters , MSc (Microbiology)
- Identifier: vital:11248 , http://hdl.handle.net/10353/74 , Biodiversity conservation -- South Africa -- Eastern Cape , Biodiversity -- South Africa -- Eastern Cape , Salmonella typhimurium
- Description: In this study, the diversity of forty Salmonella isolates from selected drinking water and wastewater sources in the Eastern Cape Province of South Africa was assessed using parameters such as protein and lipopolysaccharide profile analysis, DNA fingerprinting and antibiotic susceptibility profile as test indices. Wastewater samples from Amalinda, Shornville and Fort Hare wastewater plants, and water samples from Gogogo and Tyume rivers were collected on ice and transported to the laboratory of the department of Microbiology and Biochemistry, University of Fort Hare for processing. The DNA dendograms of Salmonella and the applied UPGMA revealed 4 similarity groups of the strains. Most of the strains recovered from Amalinda, Shornville, Fort Hare wastewater plants, Gogogo and Tyume rivers show a high percentage of genetic similarity. On the other hand, protein dendograms of Salmonella isolates revealed 2 similarity groups which varied widely. Also, the lipopolysaccharide dendograms revealed three similarity groups with the first similarity groups showing a very high relatedness between strains from different water sources. The second similarity group included 16 strains which formed a rather homogenous group, and the third similarity group formed a distinct group. Of the seven antibiotics and sulfonamides tested against the Salmonella species, five namely, neomycin, chloramphenicol, kanamycin, streptomycin and cotrimoxazole were significantly inhibitory, while the bacteria showed considerable resistance to doxycycline and sulphamethoxazole. Our results based on restriction digestion, SDS/PAGE and dendogram construction show that there is a high similarity between the forty Salmonella strains studied, and that these methods are valuable tools for evaluating the relatedness ofSalmonella species. Our observations have proffered a veritable reference point on the diversity of Salmonella strains in the studied area.
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- Date Issued: 2008
Contrasting biodiversity values in four states of Eastern Province thornveld
- Authors: Duncan, Imogen May
- Date: 2010
- Subjects: Biodiversity -- South Africa -- Eastern Cape , Agrobiodiversity -- South Africa -- Eastern Cape , Agricultural ecology -- South Africa -- Eastern Cape , Veld -- South Africa -- Eastern Cape , Landscape assessment -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4190 , http://hdl.handle.net/10962/d1003759 , Biodiversity -- South Africa -- Eastern Cape , Agrobiodiversity -- South Africa -- Eastern Cape , Agricultural ecology -- South Africa -- Eastern Cape , Veld -- South Africa -- Eastern Cape , Landscape assessment -- South Africa -- Eastern Cape
- Description: Land use and land transformation are major threats to biodiversity. Only a small percentage of land and thus biodiversity is protected within reserves. The majority of biodiversity lies in the hands of private and communal farmers and in order to protect biodiversity they must perceive it as having some value and have the means and incentive to conserve it. This study examined two things: (i) the relationship between biodiversity and measures of ecosystem health, range condition, primary production and presence of useful plants that would be expected to be of relevant use to land users, (ii) the perceptions of farmers of vegetation states that differ in the abovementioned attributes. Within the Eastern Province Thornveld of the Smaldeel area, four different vegetation states were selected for the study, namely park-like grassland with scattered Acacia karroo (“savanna”), heavily infested Acacia karroo grassland (“acacia”), thicket-grassland mosaic (“thicket”) and heavily utilised thicketgrassland in communal lands (“communal”). The four states are a consequence of different patterns of browsing and fire, in both pre-colonial and recent times. Different ecological attributes were assessed and compared for each state and the relationships between the different attributes determined. Ecosystem health, in terms of stability or resistance to erosion, infiltration/water-holding capacity, and nutrient cycling were compared using Landscape Function Analysis. The agricultural value of the different landscapes was measured using range condition assessment techniques. Plant species richness and other measures of diversity, along with their conservation and usefulness values, were compared between states. Plant productivity and biomass were compared using satellite data. The thicket state was found to be the most functional due to the added habitat complexity provided by the vegetation. It was the most biodiverse, the most useful and contained many, but not all of the important conservation species. The communal state had high biodiversity and was be fairly resilient to heavy usage, not showing the expected signs of land degradation. The savanna state, although thought of as the optimum state for cattle production, was not significantly different from the other states in terms of agricultural potential, but had the lowest values for plant diversity, browse potential, abundance of useful plant species and biomass. The acacia state had the highest and least stable values in terms of biomass production, however it was found to contain species of conservation importance. The preference that four groups of land users, namely men and women from commercial and communal farming areas, expressed for the four vegetation states was assessed using semi-structured interviews in conjunction with A3 colour photographs. The men and women from the communal areas and the men from the commercial areas valued the thicket state highly for its farming potential. The male commercial farmers also valued the savanna state highly as they perceived it as being most productive for cattle farming. Both the thicket state and the savanna state were found aesthetically pleasing by all the user groups, in line with theories of preference for modified savannas and for familiar environments. There appears to be potential for preserving biodiversity on farmland. The farmers in this study, with their very utilitarian perspective, were found to intuitively gauge the health of the landscape and recognise biodiversity as indicating good farming land. The commercial farmers were strongly influenced by economic motives and thus attracted to the savanna state, but also recognised the opportunity for a wider variety of farming activities in the thicket state. The communal farmers have a high dependence on the land for their livelihoods and preferred the thicket state for its overall usefulness. The views of the farmers indicate that the opportunity for conservation is good, however much of the thicket state lies in the communal land, where the openaccess land use system makes managing for biodiversity difficult.
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- Date Issued: 2010
Institutional change and ecosystem dynamics in the communal areas around Mt Coke State Forest, Eastern Cape, South Africa
- Authors: Cundill, Georgina
- Date: 2005
- Subjects: Biodiversity -- South Africa -- Eastern Cape , Ecosystem management -- South Africa -- Eastern Cape , Natural resources -- Management -- South Africa -- Eastern Cape , Sustainable agriculture -- South Africa -- Eastern Cape , Sustainable development -- South Africa -- Eastern Cape , Rural development -- South Africa -- Eastern Cape , Nature conservation -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MA
- Identifier: vital:4746 , http://hdl.handle.net/10962/d1006959 , Biodiversity -- South Africa -- Eastern Cape , Ecosystem management -- South Africa -- Eastern Cape , Natural resources -- Management -- South Africa -- Eastern Cape , Sustainable agriculture -- South Africa -- Eastern Cape , Sustainable development -- South Africa -- Eastern Cape , Rural development -- South Africa -- Eastern Cape , Nature conservation -- South Africa -- Eastern Cape
- Description: Through a combination of theoretical discussion and case study analysis from two villages in the Eastern Cape Province, South Africa, this thesis explores the relationship between institutional change and ecosystem dynamics through a multi-scale approach that combines local and scientific knowledge. Several conceptual approaches were combined in this study. These included; the Resilience perspective, the Sustainable Rural Livelihoods approach, the Millennium Assessment framework and principles, and the Environmental Entitlements approach. Various participatory research techniques were employed which combined with GIS technologies, existing data sets, and historical records. Common pool resource areas are social spaces, where local values attached to resources are institutionally mediated, politically nuanced, economically interpreted and historically situated. Political driving forces at various scales have played a disproportionate role in local level institutional functioning in the case study area. In particular, inappropriate state-lead interventions into land use planning have weakened local level institutions, and have reduced the ability of the linked social-ecological system to cope with change and uncertainty. People and ecosystems become more vulnerable when driving forces such as political upheaval, economic depression and drought over-lap. However, rural people are not mere spectators in the face of these driving forces; they respond both reactively and proactively to ensure resilience to change and uncertainty. Ecosystems at Mt Coke play a key role during times of crisis in rural livelihoods. These ecosystems have undergone various short-term cyclical changes largely in response to rainfall fluctuations, and some longer-term changes linked to political events and trends that have affected management practices and local institutions over time. Orthodox ecological interpretations of ecosystem change appear to ignore four key factors identified in this study: 1) the role of institutions in shaping access to resources, 2) the demand for resources in rural livelihoods, 3) the dynamic interaction between social and natural systems, and 4) the interaction between social and natural systems across scales of analysis. The future of common pool resource management lies in the combination of local and scientific knowledge through an adaptive management approach that encourages learning and adaptation in local level institutional structures.
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- Date Issued: 2005
Plant community distribution and diversity, and threats to vegetation of the Kromme River peat basins, Eastern Cape Province, South Africa
- Authors: Nsor, Collins Ayine
- Date: 2008
- Subjects: Kromme River (Eastern Cape, South Africa) , Peatland ecology -- South Africa -- Eastern Cape , Plant diversity conservation -- South Africa -- Eastern Cape , Peatland plants -- South Africa -- Eastern Cape , Peatlands -- South Africa -- Eastern Cape , Biodiversity -- South Africa -- Eastern Cape , Wetland conservation -- South Africa -- Eastern Cape , Ecosystem management -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4760 , http://hdl.handle.net/10962/d1007151 , Kromme River (Eastern Cape, South Africa) , Peatland ecology -- South Africa -- Eastern Cape , Plant diversity conservation -- South Africa -- Eastern Cape , Peatland plants -- South Africa -- Eastern Cape , Peatlands -- South Africa -- Eastern Cape , Biodiversity -- South Africa -- Eastern Cape , Wetland conservation -- South Africa -- Eastern Cape , Ecosystem management -- South Africa -- Eastern Cape
- Description: This study examined the current plant diversity status and the impact of drivers of change on the peat basins of the Kromme River peatland. It was conducted at six sites over sixty one years in the Eastern Cape Province of South Africa. I reviewed the rapid habitat and biodiversity loss of wetlands globally and discussed the distribution of wetlands and specifically peatlands in South Africa. Plant species diversity was assessed using Modified- Whittaker plots. The influence of environmental variables on floristic composition and distribution was investigated using ordination techniques (DCA and CCA). Land use dynamics were assessed by applying GIS techniques on orthorectified aerial images. Six different peat basins were subjectively classified into good, medium and poor condition peat basins. The good condition peat basin (Krugersland) was the most diverse in plant species (4.1 Shannon-Weiner’s index) (p> 0.20; F = 11.04; df = 2), with the highest mean number of plant species (32.5 ± 3.4). This was followed by the medium condition class (Kammiesbos) (26.5 ± 9.0) and poor condition class (Companjesdrift) (22.5 ± 8.9). On average, species composition was not evenly distributed across the peat basins (p> 0.21; F = 0.94; df = 2), since 77.8% of the Shannon-Weiner evenness index obtained were less than one. However, there were variations in plant species richness across six peat basins as confirmed by Oneway ANOVA test (p= 0.0008, F = 1241.6, df = 4). Key environmental variables that influenced plant species distribution and structure were erosion and grazing intensity, potassium, phosphorus, soil pH and calcium. Total species variance accounted for in the first two axes for ground cover and plant height were 40.7% and 56.4% respectively. Alien species (e.g. Acacia mearnsii and Conyza scabrida) were common in degraded peat basins, whereas good condition peat basins supported indigenous species (e.g., Cyperus denudatus, Chrysanthemoides monolifera and Digitaria eriantha). Analysis of aerial images revealed a general progressive decrease in the peatland area between 1942 and 1969 in the good (Krugersland) and poor (Companjesdrift) condition class, with a marginal increase from 1969 to 2003. Peatland area in the good and poor condition class decreased by 5.3% and 8.3% respectively between 1942 and 1969, with a marginal increase of 1.5% and 4.1% respectively from 1969 to 2003. Annual net rate of change in peatland area over the 61 year period was -0.32% (good condition class) and - 0.79% (poor condition class). Transformed lands were impacted by drivers of change such as alien invasives, agricultural activities, erosion and sediment transport. The area under alien invasives increased by 50% between 1942 and 2003, with an annual net rate of change of +0.82 (good condition class) and +1.63% (poor condition class).
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- Date Issued: 2008
Population assessments of priority plant species used by local communities in and around three Wild Coast reserves, Eastern Cape, South Africa
- Authors: Fearon, Joclyn Joe
- Date: 2011
- Subjects: Plant diversity conservation -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape -- Population viability analysis , Biodiversity -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Conservation of natural resources -- South Africa -- Eastern Cape , Human-plant relationships -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4751 , http://hdl.handle.net/10962/d1007059 , Plant diversity conservation -- South Africa -- Eastern Cape , Rare plants -- South Africa -- Eastern Cape -- Population viability analysis , Biodiversity -- South Africa -- Eastern Cape , Plant conservation -- South Africa -- Eastern Cape , Conservation of natural resources -- South Africa -- Eastern Cape , Human-plant relationships -- South Africa -- Eastern Cape
- Description: The project was initiated by Eastern Cape Parks (ECP) as a request for the construction of inventories of priority species and their population levels inside three nature reserves on the Eastern Cape Wild Coast, South Africa, and to develop a strategic management plan to manage these natural resources in each reserve. Thirty key species were identified by local communities in and around Dwesa-Cwebe, Silaka and Mkambati Nature Reserves through community workshops. For forested areas belt transects of 100 m x 6 m where used. The basal circumference of key tree species within the belt transect was measured as well as the height of saplings (height < 150 m). Tree species were categorized based on densities, size class distribution (SCD) curves and values, and spatial grain. For grassland areas straight transects of 200 m long were used, along which ten 3 m x 3 m quadrates were placed at 20 m intervals. Within each grassland transect the height of herbs or tuft diameter of grasses was recorded and percentage cover estimated. Grassland species were categorized based on density, SCD curves and percentage cover. All species were placed into harvesting categories based on analysed ecological data that was collected in the field. Category 1 species were very rare or not found in the reserve and it was recommended that species be conserved and monitored. Category 2 species had low densities in the reserve indicating declining populations and was suggested that these be monitored and not harvested. Category 3 species had high densities and have potential for harvesting with strict limitations. Category 4 species were most abundant with very high densities and can be harvested within management guidelines. These categories were grouped further using social and ecological data such as harvesting risk, frequency of collection, use value and number of uses. This highlighted which species have conservation priority within each category and a decision can be made as to how intense or limited extraction should be. By incorporating GIS the distribution of each species was looked at and harvesting and non-harvesting zones established to determine where species can be extracted. Monitoring plans must consider the quantity of plant material collected, fire regimes, optimal harvesting rates and harvesting zones, and be able to pick up changes in populations. Also, it is important that the community be involved in conserving and monitoring these species. Adaptive monitoring and management must be used to steer harvesting practices in the Wild Coast reserves. This allows for the development of harvesting practices through ‘learning by doing’, and the evolution of good questions to guide monitoring decisions
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- Date Issued: 2011