Designing and implementing a virtual reality interaction framework
- Authors: Rorke, Michael
- Date: 2000
- Subjects: Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4623 , http://hdl.handle.net/10962/d1006491 , Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Description: Virtual Reality offers the possibility for humans to interact in a more natural way with the computer and its applications. Currently, Virtual Reality is used mainly in the field of visualisation where 3D graphics allow users to more easily view complex sets of data or structures. The field of interaction in Virtual Reality has been largely neglected due mainly to problems with input devices and equipment costs. Recent research has aimed to overcome these interaction problems, thereby creating a usable interaction platform for Virtual Reality. This thesis presents a background into the field of interaction in Virtual Reality. It goes on to propose a generic framework for the implementation of common interaction techniques into a homogeneous application development environment. This framework adds a new layer to the standard Virtual Reality toolkit – the interaction abstraction layer, or interactor layer. This separation is in line with current HCI practices. The interactor layer is further divided into specific sections – input component, interaction component, system component, intermediaries, entities and widgets. Each of these performs a specific function, with clearly defined interfaces between the different components to promote easy objectoriented implementation of the framework. The validity of the framework is shown in comparison with accepted taxonomies in the area of Virtual Reality interaction. Thus demonstrating that the framework covers all the relevant factors involved in the field. Furthermore, the thesis describes an implementation of this framework. The implementation was completed using the Rhodes University CoRgi Virtual Reality toolkit. Several postgraduate students in the Rhodes University Computer Science Department utilised the framework implementation to develop a set of case studies. These case studies demonstrate the practical use of the framework to create useful Virtual Reality applications, as well as demonstrating the generic nature of the framework and its extensibility to be able to handle new interaction techniques. Finally, the generic nature of the framework is further demonstrated by moving it from the standard CoRgi Virtual Reality toolkit, to a distributed version of this toolkit. The distributed implementation of the framework utilises the Common Object Request Broker Architecture (CORBA) to implement the distribution of the objects in the system. Using this distributed implementation, we are able to ascertain that CORBA is useful in the field of distributed real-time Virtual Reality, even taking into account the extra overhead introduced by the additional abstraction layer. We conclude from this thesis that it is important to abstract the interaction layer from the other layers of a Virtual Reality toolkit in order to provide a consistent interface to developers. We have shown that our framework is implementable and useful in the field, making it easier for developers to include interaction in their Virtual Reality applications. Our framework is able to handle all the current aspects of interaction in Virtual Reality, as well as being general enough to implement future interaction techniques. The framework is also applicable to different Virtual Reality toolkits and development platforms, making it ideal for developing general, cross-platform interactive Virtual Reality applications.
- Full Text:
- Date Issued: 2000
- Authors: Rorke, Michael
- Date: 2000
- Subjects: Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4623 , http://hdl.handle.net/10962/d1006491 , Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Description: Virtual Reality offers the possibility for humans to interact in a more natural way with the computer and its applications. Currently, Virtual Reality is used mainly in the field of visualisation where 3D graphics allow users to more easily view complex sets of data or structures. The field of interaction in Virtual Reality has been largely neglected due mainly to problems with input devices and equipment costs. Recent research has aimed to overcome these interaction problems, thereby creating a usable interaction platform for Virtual Reality. This thesis presents a background into the field of interaction in Virtual Reality. It goes on to propose a generic framework for the implementation of common interaction techniques into a homogeneous application development environment. This framework adds a new layer to the standard Virtual Reality toolkit – the interaction abstraction layer, or interactor layer. This separation is in line with current HCI practices. The interactor layer is further divided into specific sections – input component, interaction component, system component, intermediaries, entities and widgets. Each of these performs a specific function, with clearly defined interfaces between the different components to promote easy objectoriented implementation of the framework. The validity of the framework is shown in comparison with accepted taxonomies in the area of Virtual Reality interaction. Thus demonstrating that the framework covers all the relevant factors involved in the field. Furthermore, the thesis describes an implementation of this framework. The implementation was completed using the Rhodes University CoRgi Virtual Reality toolkit. Several postgraduate students in the Rhodes University Computer Science Department utilised the framework implementation to develop a set of case studies. These case studies demonstrate the practical use of the framework to create useful Virtual Reality applications, as well as demonstrating the generic nature of the framework and its extensibility to be able to handle new interaction techniques. Finally, the generic nature of the framework is further demonstrated by moving it from the standard CoRgi Virtual Reality toolkit, to a distributed version of this toolkit. The distributed implementation of the framework utilises the Common Object Request Broker Architecture (CORBA) to implement the distribution of the objects in the system. Using this distributed implementation, we are able to ascertain that CORBA is useful in the field of distributed real-time Virtual Reality, even taking into account the extra overhead introduced by the additional abstraction layer. We conclude from this thesis that it is important to abstract the interaction layer from the other layers of a Virtual Reality toolkit in order to provide a consistent interface to developers. We have shown that our framework is implementable and useful in the field, making it easier for developers to include interaction in their Virtual Reality applications. Our framework is able to handle all the current aspects of interaction in Virtual Reality, as well as being general enough to implement future interaction techniques. The framework is also applicable to different Virtual Reality toolkits and development platforms, making it ideal for developing general, cross-platform interactive Virtual Reality applications.
- Full Text:
- Date Issued: 2000
Strike comparison of the compositional variations of the lower group and middle group chromitite seams of the critical zone, Western Bushveld complex
- Authors: Doig, Heather Leslie
- Date: 2000
- Subjects: Chromite -- South Africa , Geology -- South Africa , Mineralogy -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5005 , http://hdl.handle.net/10962/d1005618
- Description: The variations in the composition, specifically the Cr20 S content and the Cr:Fe ratio, and the morphology of the Lower Group (LG) and Middle Group (MG) chromitite seams of the Critical Zone (CZ) across the western Bushveld Complex, including the Ruighoek and Brits sections, is investigated by means of whole-rock chemical data, both major and trace elements analysis, XRD and electron microprobe data. As a result ofthe paucity of exposed or developed LG1 - LG5 chromitite seams in the western Bushveld Complex, this study is confined to the investigation of the compositional variations of the LG6 to MG4 chromitite seams. In only one section, the Ruighoek section, was the entire succession of chromitite seams, from the LG1 - MG4, exposed. The silicate host rocks from the LG6 pyroxenite footwall to the collar of the CC2 drillcore (lower uCZ) in the Rustenburg section were sampled. This study reviews the compositional trends of the silicate host rocks, as the compositional variations of the chromitite seams reflect the chemical evolution of the host cumulate environment and, to a lesser degree, the composition onhe interstitial mineral phases in the chromitite seams. The compositional variations of the LG and MG chromitite seams are attributed to the compositional contrast between the replenishing magma and the resident magma. The chemical trends of the LG and MG chromitite layers and the host cumUlate rOCKS do not support the existence of two compositionalfy dissimilar magmas in the CZ, rather the cyclic layering of the CZ and the chemical variations of the chromitite seams are attributed to the mixing of primitive magma with the resident magma, both of which have essentially similar compositions. The compositional variations of the LG and MG chromitite seams along strike away from the supposed feeder site (Union section) to the distal facies (Brits section) are attributed to the advanced compositional contrast between the resident magma and the replenishing primitive magma pulses. The CZ is characterized by reversals in fractionation trends and this is attributed to the compositional evolution of the parental magma and not to the replenishment of the resident magma by influxes of grossly dissimilar magma compositions. The Cr20 S content and the Cr:Fe ratio of the MG chromitite layers increase from the Ruighoek (near proximal) section to the Brits section (distal facies). This is attributed to the advanced compositional contrasts between the resident magma and the replenishing primitive magma. In contrast, the Cr20 3 content and Cr:Fe ratios ofthe LG6 and LG8a chromitite seams decreases eastwards from the Ruighoek section. The average Cr:Fe ratio for the western Bushveld Complex is between 1.5 and\2.0, nonetheless, a progressively lower Cr:Fe ratio is noted from the LG1 chromitite up through to the MG4 chromitite seam in the Ruighoek section. tn the LG2 - LG4 chromitite interval a deviation to higher.lratios is encountered. A progressive substitution of Cr by AT and Fe in the Cr-spinel crystal lattice characterizes the chromitite succession from the LG1 seam up through the chromitite succession to MG4. The petrogeneSiS of the chromitite seams of the CZ is attributed to magma mixing and fractional crystallization of a single magma type.
- Full Text:
- Date Issued: 2000
- Authors: Doig, Heather Leslie
- Date: 2000
- Subjects: Chromite -- South Africa , Geology -- South Africa , Mineralogy -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5005 , http://hdl.handle.net/10962/d1005618
- Description: The variations in the composition, specifically the Cr20 S content and the Cr:Fe ratio, and the morphology of the Lower Group (LG) and Middle Group (MG) chromitite seams of the Critical Zone (CZ) across the western Bushveld Complex, including the Ruighoek and Brits sections, is investigated by means of whole-rock chemical data, both major and trace elements analysis, XRD and electron microprobe data. As a result ofthe paucity of exposed or developed LG1 - LG5 chromitite seams in the western Bushveld Complex, this study is confined to the investigation of the compositional variations of the LG6 to MG4 chromitite seams. In only one section, the Ruighoek section, was the entire succession of chromitite seams, from the LG1 - MG4, exposed. The silicate host rocks from the LG6 pyroxenite footwall to the collar of the CC2 drillcore (lower uCZ) in the Rustenburg section were sampled. This study reviews the compositional trends of the silicate host rocks, as the compositional variations of the chromitite seams reflect the chemical evolution of the host cumulate environment and, to a lesser degree, the composition onhe interstitial mineral phases in the chromitite seams. The compositional variations of the LG and MG chromitite seams are attributed to the compositional contrast between the replenishing magma and the resident magma. The chemical trends of the LG and MG chromitite layers and the host cumUlate rOCKS do not support the existence of two compositionalfy dissimilar magmas in the CZ, rather the cyclic layering of the CZ and the chemical variations of the chromitite seams are attributed to the mixing of primitive magma with the resident magma, both of which have essentially similar compositions. The compositional variations of the LG and MG chromitite seams along strike away from the supposed feeder site (Union section) to the distal facies (Brits section) are attributed to the advanced compositional contrast between the resident magma and the replenishing primitive magma pulses. The CZ is characterized by reversals in fractionation trends and this is attributed to the compositional evolution of the parental magma and not to the replenishment of the resident magma by influxes of grossly dissimilar magma compositions. The Cr20 S content and the Cr:Fe ratio of the MG chromitite layers increase from the Ruighoek (near proximal) section to the Brits section (distal facies). This is attributed to the advanced compositional contrasts between the resident magma and the replenishing primitive magma. In contrast, the Cr20 3 content and Cr:Fe ratios ofthe LG6 and LG8a chromitite seams decreases eastwards from the Ruighoek section. The average Cr:Fe ratio for the western Bushveld Complex is between 1.5 and\2.0, nonetheless, a progressively lower Cr:Fe ratio is noted from the LG1 chromitite up through to the MG4 chromitite seam in the Ruighoek section. tn the LG2 - LG4 chromitite interval a deviation to higher.lratios is encountered. A progressive substitution of Cr by AT and Fe in the Cr-spinel crystal lattice characterizes the chromitite succession from the LG1 seam up through the chromitite succession to MG4. The petrogeneSiS of the chromitite seams of the CZ is attributed to magma mixing and fractional crystallization of a single magma type.
- Full Text:
- Date Issued: 2000
Exploitation patterns of the multi species/gear hake (Merluccius capensis and paradoxus) fishery on South Africa's southeast coast
- Authors: Sutton, Glen Robert
- Date: 2000
- Subjects: Fishing -- South Africa , Hake -- South Africa , Merluccius capensis -- South Africa , Merluccius paradoxus -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5280 , http://hdl.handle.net/10962/d1005124 , Fishing -- South Africa , Hake -- South Africa , Merluccius capensis -- South Africa , Merluccius paradoxus -- South Africa
- Description: The motivation for this study was to examine the exploitation patterns of the M. capensis and M. paradoxus hake fisheries on the Southeast Coast, and determine the size and species of hake caught in each of the hand-line, long-line, and trawl methods. The handline hake fishery has increased substantially over the last several years and concerns are beginning to emerge about the impact this will have on the inshore resource collected on the South Coast between August 1998 and July 1999 was used to describe the hand-line method and estimate annual landings. Data on the size and species in longline catches of hake caught during 1997 were already available for this study. Size distributions in trawl catches were determined from commercial category landing data reported by catch weight and depth. The species composition in these catches determined by comparison using RV Afrikana survey data collected in the same depth regions. Location plays a significant role in determining the sizes and species of hake caught by each gear. Hand-lines catch smaller sizes on average than do long-lines, inshore trawls target mainly M. capensis while offshore trawls catch both hake species. A substantial amount of the hand-line hake caught on the South Coast is not reported. Examination of the exploitation patterns reveal that intense trawling pressure is directed at the smaller sized M. paradoxus inhabiting the depth region between 160-400-meters. Inshore trawls discard a large amount of small sized M. capensis within the 100-meter isobath. A preliminary stock assessment on the status of each hake species found that M. paradoxus appears to be over-exploited while M. capensis was in better shape. However, length-based pseudo-cohort analysis, used in this assessment, is critically reliant on having length frequency data from a steady state population in equilibrium. This limits the application of this model for management purposes and this finding is purely theoretical at this stage. Results suggest that each hake species is under a different pattern and level of exploitation and the multi-species nature of hake stocks on the South Coast should be considered in developing optimum management policies. Future work should focus on developing appropriate age/length keys so that an age-based VPA, which is more powerful than the length-based approach, can be applied towards stock assessments on the South Coast. Alternatively, length-data covering a longer period should be compiled and the equilibrium assumption further investigated so that the results from length-based models can be used with more confidence.
- Full Text:
- Date Issued: 2000
- Authors: Sutton, Glen Robert
- Date: 2000
- Subjects: Fishing -- South Africa , Hake -- South Africa , Merluccius capensis -- South Africa , Merluccius paradoxus -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5280 , http://hdl.handle.net/10962/d1005124 , Fishing -- South Africa , Hake -- South Africa , Merluccius capensis -- South Africa , Merluccius paradoxus -- South Africa
- Description: The motivation for this study was to examine the exploitation patterns of the M. capensis and M. paradoxus hake fisheries on the Southeast Coast, and determine the size and species of hake caught in each of the hand-line, long-line, and trawl methods. The handline hake fishery has increased substantially over the last several years and concerns are beginning to emerge about the impact this will have on the inshore resource collected on the South Coast between August 1998 and July 1999 was used to describe the hand-line method and estimate annual landings. Data on the size and species in longline catches of hake caught during 1997 were already available for this study. Size distributions in trawl catches were determined from commercial category landing data reported by catch weight and depth. The species composition in these catches determined by comparison using RV Afrikana survey data collected in the same depth regions. Location plays a significant role in determining the sizes and species of hake caught by each gear. Hand-lines catch smaller sizes on average than do long-lines, inshore trawls target mainly M. capensis while offshore trawls catch both hake species. A substantial amount of the hand-line hake caught on the South Coast is not reported. Examination of the exploitation patterns reveal that intense trawling pressure is directed at the smaller sized M. paradoxus inhabiting the depth region between 160-400-meters. Inshore trawls discard a large amount of small sized M. capensis within the 100-meter isobath. A preliminary stock assessment on the status of each hake species found that M. paradoxus appears to be over-exploited while M. capensis was in better shape. However, length-based pseudo-cohort analysis, used in this assessment, is critically reliant on having length frequency data from a steady state population in equilibrium. This limits the application of this model for management purposes and this finding is purely theoretical at this stage. Results suggest that each hake species is under a different pattern and level of exploitation and the multi-species nature of hake stocks on the South Coast should be considered in developing optimum management policies. Future work should focus on developing appropriate age/length keys so that an age-based VPA, which is more powerful than the length-based approach, can be applied towards stock assessments on the South Coast. Alternatively, length-data covering a longer period should be compiled and the equilibrium assumption further investigated so that the results from length-based models can be used with more confidence.
- Full Text:
- Date Issued: 2000
Asymmetric α-alkylation reactions
- Authors: Klein, Rosalyn
- Date: 2000
- Subjects: Asymmetric synthesis , Alkylation , Chemical reactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4405 , http://hdl.handle.net/10962/d1006710 , Asymmetric synthesis , Alkylation , Chemical reactions
- Description: A novel camphor-derived hydroxy ketal 138 has been developed as a crural auxiliary, and used to prepare a series of six carboxylic esters of increasing steric bulk. The α-benzylation of this series of esters was achieved with diastereoselectivities of 59 - 83% d. e. and in 39 - 48% material yield. These results compared very favourably with those obtained in earlier studies using a regioisomeric analogue as the chiral auxiliary. Computer.modelling studies of the putative enolate intermediate has provided some insight into the possible mode of electrophilic attack at the α-carbon and the roles of the ketal protecting group and the lithium cation in these asymmetric transformations. In a related investigation, based on earlier work, a camphor-derived imino lactone has provided convenient access to α-alkyl α-amino acids, the imino lactone serving as a masked glycine equivalent. Using straight chain primary alkyl iodides [RI; R = Me, Et, Pr, Bu, CH₃(CH₂)₄ and CH₃(CH₄)₅], alkylation of the potassium enolate of the camphor-derived imino lactone was effected with 54 - 89% d.e. and in 54 - 87% material yield. Four novel alkylated derivatives were synthesised using isopropyl iodide, sec-butyl iodide and allyl iodide, the latter reagent resulting in both the monoallylated and diallylated products. While very good diastereoselectivities were achieved (83 - 88% d. e.) in these reactions, the material yields from reaction with the secondary alkyl iodides were low (31- 35%) due, presumably, to their decreased electrophilicity. Computer modelling studies of the enolate were carried out and support the hypothesis of endo attack by the electrophile on the enolate intermediate. These studies also indicate the possibility of coordination of the postassium cation to the endocyclic ester oxygen, thus effectively anchoring the bulky cation away from the reaction site.
- Full Text:
- Date Issued: 2000
- Authors: Klein, Rosalyn
- Date: 2000
- Subjects: Asymmetric synthesis , Alkylation , Chemical reactions
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4405 , http://hdl.handle.net/10962/d1006710 , Asymmetric synthesis , Alkylation , Chemical reactions
- Description: A novel camphor-derived hydroxy ketal 138 has been developed as a crural auxiliary, and used to prepare a series of six carboxylic esters of increasing steric bulk. The α-benzylation of this series of esters was achieved with diastereoselectivities of 59 - 83% d. e. and in 39 - 48% material yield. These results compared very favourably with those obtained in earlier studies using a regioisomeric analogue as the chiral auxiliary. Computer.modelling studies of the putative enolate intermediate has provided some insight into the possible mode of electrophilic attack at the α-carbon and the roles of the ketal protecting group and the lithium cation in these asymmetric transformations. In a related investigation, based on earlier work, a camphor-derived imino lactone has provided convenient access to α-alkyl α-amino acids, the imino lactone serving as a masked glycine equivalent. Using straight chain primary alkyl iodides [RI; R = Me, Et, Pr, Bu, CH₃(CH₂)₄ and CH₃(CH₄)₅], alkylation of the potassium enolate of the camphor-derived imino lactone was effected with 54 - 89% d.e. and in 54 - 87% material yield. Four novel alkylated derivatives were synthesised using isopropyl iodide, sec-butyl iodide and allyl iodide, the latter reagent resulting in both the monoallylated and diallylated products. While very good diastereoselectivities were achieved (83 - 88% d. e.) in these reactions, the material yields from reaction with the secondary alkyl iodides were low (31- 35%) due, presumably, to their decreased electrophilicity. Computer modelling studies of the enolate were carried out and support the hypothesis of endo attack by the electrophile on the enolate intermediate. These studies also indicate the possibility of coordination of the postassium cation to the endocyclic ester oxygen, thus effectively anchoring the bulky cation away from the reaction site.
- Full Text:
- Date Issued: 2000
The geomorphological impacts of impoundments, with particular reference to tributary bar development on the Keiskamma River, Eastern Cape
- Authors: McGregor, Gillian Kathleen
- Date: 2000
- Subjects: Rivers--South Africa--Regulation , Rivers--South Africa--Regulation--Environmental aspects , Rivers--South Africa--Eastern Cape , Geomorphology--South Africa--Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4835 , http://hdl.handle.net/10962/d1005510 , Rivers--South Africa--Regulation , Rivers--South Africa--Regulation--Environmental aspects , Rivers--South Africa--Eastern Cape , Geomorphology--South Africa--Eastern Cape
- Description: The primary aim of this research was to develop and test a conceptual model of the geomorphological impacts of river regulation, based on a review of relevant international literature. It was motivated by the fact that there is very little local information on the topic, and it was intended that the model might provide a starting point for assessing the impact of impoundments on South African river systems. At present most research in South Africa on the impact of impoundments is undertaken from an ecological perspective. In order to manage our water resources sustainably it is necessary to have a better understanding of our river systems. South Africa is characterised by a variable climatic regime and, in order to supply water to the various user sectors of the nation, dams have to be larger than elsewhere in the world, to trap most of the mean annual runoff and provide a reliable water store (Alexander, 1985). South African dams have been designed to reduce the variability of a naturally variable regime. The impact of flow regulation in dryland rivers has been described as 'ecologically catastrophic at every level.' It is therefore hardly surprising that the impact of these dams on the natural functioning of rivers is substantial. The conceptual model showed that there are many responses to river impoundment, which are varied and complex, both in time and space. Responses or secondary impacts depended on the nature and degree of the primary impact or process alteration, on the sediment and flow regime of the river. High flows were affected in all cases and low flows were affected in most cases. The simplest form of change was Petts' (1979) concept of 'accommodation' of the regulated flow within the existing channel form. More complex responses occUrred where the channel perimeter was unstable, or where tributaries introduced fresh sediment loads. The river could adjust its long profile, cross sectional area and substrate composition by aggradation or degradation. The conceptual model was used in the Building Block Methodology to predict impoundment impacts at Instream Flow Requirement workshops on the Berg, Komati and Bivane rivers. It was also used in assessing the impact of the Sandile Dam on the Keiskamma river. Tributary junctions were identified as likely sites of change, and the morphology of bars at these junctions was investigated. Due to the number of variables affecting the sediment and flow regime in the system, and due to the fact that the primary impacts were not substantial, it was not possible to come to any decisive conclusions. It would seem that the dam is well located in the catchment, and, because the water is not heavily utilised, the secondary impacts are not great. The conceptual model was found to be a useful basic tool which might contribute to a better understanding of our river systems, and ultimately to improved sustainable resource management.
- Full Text:
- Date Issued: 2000
- Authors: McGregor, Gillian Kathleen
- Date: 2000
- Subjects: Rivers--South Africa--Regulation , Rivers--South Africa--Regulation--Environmental aspects , Rivers--South Africa--Eastern Cape , Geomorphology--South Africa--Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4835 , http://hdl.handle.net/10962/d1005510 , Rivers--South Africa--Regulation , Rivers--South Africa--Regulation--Environmental aspects , Rivers--South Africa--Eastern Cape , Geomorphology--South Africa--Eastern Cape
- Description: The primary aim of this research was to develop and test a conceptual model of the geomorphological impacts of river regulation, based on a review of relevant international literature. It was motivated by the fact that there is very little local information on the topic, and it was intended that the model might provide a starting point for assessing the impact of impoundments on South African river systems. At present most research in South Africa on the impact of impoundments is undertaken from an ecological perspective. In order to manage our water resources sustainably it is necessary to have a better understanding of our river systems. South Africa is characterised by a variable climatic regime and, in order to supply water to the various user sectors of the nation, dams have to be larger than elsewhere in the world, to trap most of the mean annual runoff and provide a reliable water store (Alexander, 1985). South African dams have been designed to reduce the variability of a naturally variable regime. The impact of flow regulation in dryland rivers has been described as 'ecologically catastrophic at every level.' It is therefore hardly surprising that the impact of these dams on the natural functioning of rivers is substantial. The conceptual model showed that there are many responses to river impoundment, which are varied and complex, both in time and space. Responses or secondary impacts depended on the nature and degree of the primary impact or process alteration, on the sediment and flow regime of the river. High flows were affected in all cases and low flows were affected in most cases. The simplest form of change was Petts' (1979) concept of 'accommodation' of the regulated flow within the existing channel form. More complex responses occUrred where the channel perimeter was unstable, or where tributaries introduced fresh sediment loads. The river could adjust its long profile, cross sectional area and substrate composition by aggradation or degradation. The conceptual model was used in the Building Block Methodology to predict impoundment impacts at Instream Flow Requirement workshops on the Berg, Komati and Bivane rivers. It was also used in assessing the impact of the Sandile Dam on the Keiskamma river. Tributary junctions were identified as likely sites of change, and the morphology of bars at these junctions was investigated. Due to the number of variables affecting the sediment and flow regime in the system, and due to the fact that the primary impacts were not substantial, it was not possible to come to any decisive conclusions. It would seem that the dam is well located in the catchment, and, because the water is not heavily utilised, the secondary impacts are not great. The conceptual model was found to be a useful basic tool which might contribute to a better understanding of our river systems, and ultimately to improved sustainable resource management.
- Full Text:
- Date Issued: 2000
The evolution of the Brosterlea Volcanic Complex, Eastern Cape, South Africa
- Authors: Surtees, Grant Bradley
- Date: 2000
- Subjects: Volcanism , Geology -- South Africa -- Eastern Cape -- Brosterlea Volcanic Complex , Geology -- South Africa -- Eastern Cape , Flood basalts , Geology, Structural -- South Africa , Formations (Geology) -- South Africa , Geology, Structural -- Maps , Geological mapping
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4944 , http://hdl.handle.net/10962/d1005556 , Volcanism , Geology -- South Africa -- Eastern Cape -- Brosterlea Volcanic Complex , Geology -- South Africa -- Eastern Cape , Flood basalts , Geology, Structural -- South Africa , Formations (Geology) -- South Africa , Geology, Structural -- Maps , Geological mapping
- Description: Detailed field mapping (Map, Appendix B) has been conducted in and around the boundaries of a 14x18km, volcanic complex 35km northeast of Molteno in the Eastern Cape Province, South Africa. The structure is interpreted as a subsidence structure, and is filled with two volcaniclastic breccias, numerous lava flows, a number of sedimentary facies, and lies on a base of Clarens Formation overlying Elliot Formation rocks. This is an important study because 'widespread, voluminous fields of basaltic breccias are very rare (see Hanson and Elliot, 1996) and this is the first time that this type of volcanic complex and its deposits have been described. Detailed analyses of the two volcaniclastic breccias revealed changes in colour, clast types, clast sizes, and degree of alteration over relatively short distances both vertically and laterally within a single breccia unit. The variation in clast sizes implies a lack of sorting of the breccias. The lower of the two volcaniclastic breccias fills the subsidence structure, and outcrops between the Stormberg sedimentary sequence and the overlying Drakensberg basalts and was produced from phreatomagmatic eruptions signalling the start of the break-up of Gondwanaland in the mid-Jurassic. The upper volcaniclastic breccia is interbedded with the flood basalts and is separated from the lower breccia by up to 100m of lava flows in places, it is finer-grained than the lower volcaniclastic breccia, and it extends over 10km south, and over 100km north from the volcanic complex. The upper breccia is inferred to have been transported from outside the study area, from a source presumably similar to the subsidence structure in the volcanic complex. The pyroclastic material forming the upper breccia was transported to the subsidence structure as a laharic debris flow, based on its poorly sorted, unwelded and matrix-supported appearance. However, both breccias are unlikely to have been derived from epiclastic reworking of lava flows as they contain glass shards which are atypical of those derived from the autoclastic component of lava flows. The breccias are therefore not "secondary" lahars. There is also no evidence of any palaeotopographic highs from which the breccias could have been derived as gravity-driven flows. Based on the occurrence of three, 1m thick lacustrine deposits, localised peperite, fluvial reworking of sandstone and breccia in an outcrop to the south of the subsidence structure, and channel-lags encountered only in the upper units of the Clarens Formation and only within the subsidence structure, the palaeoenvironment inferred for the subsidence structure is one of wet sediment, possibly a shallow lake, in a topographic depression fed by small streams. Magmatic intrusions below the subsidence structure heated the water-laden, partly consolidated Clarens Formation sandstones, causing the circulation of pore fluid which resulted in the precipitation of minerals forming pisoliths in the sandstones. Intruding magma mixed, nonexplosively, with the wet, unconsolidated sediments near the base of the Clarens Formation (at approximately 100m below the surface), forming fluidal peperite by a process of sediment fluidisation where magma replaces wet sediment and cools slowly enough to prevent the magma fracturing brittly. Formation of fluidal peperite may have been a precursor to the development of FCIs (Fuel Coolant Interactions) (Busby-Spera and White, 1987). The breccias may represent the products of FCIs and may be the erupted equivalents of the peperites, suggesting a possible genetic link between the two. The peperites may have given way to FCI eruptions due to a number of factors including the drying out of the sediments and/or an increase in the volume of intruded magma below the subsidence structure which may have resulted in a more explosive interaction between sediment and magma. Phreatic activity fragmented and erupted the Clarens Formation sandstone, and stream flows reworked the angular sandstone fragments, pisoliths and sand grains into channelised deposits. With an increase in magmatic activity below the subsidence structure, phreatic activity became phreatomagmatic. The wet, partly consolidated Clarens Formation, and underlying, fully consolidated Elliot Formation sediments were erupted and fragmented. Clasts and individual grains of these sediments were redeposited with juvenile and non-juvenile basaltic material probably by a combination of back fall, where clasts erupted into the air fell directly back into the structure, and backflow where material was erupted out of the structure, but immediately flowed back in as lahars. This material formed the lower volcaniclastic breccia. A fault plane is identified along the southwestern margin of the subsidence structure, and is believed to continue up the western margin to the northwestern corner. A large dolerite body has intruded along the inferred fault plane on the western margin of the structure, and may be related to the formation of the lower volcaniclastic breccia, either directly through fluidisation of wet sediment during its intrusion, or as a dyke extending upwards from a network of sill-like intrusions below the subsidence structure. Geochemical analysis of the Drakensberg basalt lava flows by Mitchell (1980) and Masokwane (1997) revealed four distinct basalt types; the Moshesh's Ford, the Tafelkop, the Roodehoek, and the Vaalkop basalts. Basalt clasts sampled from the lower volcaniclastic breccia were shown to belong to the Moshesh's Ford basalt type which does not outcrop in situ within the subsidence structure. This implies that the Moshesh's Ford basalts were emplaced prior to the formation of the lower volcaniclastic breccia, and may have acted as a "cap-rock" over the system, allowing pressure from the vaporised fluids, heated by intruding basalt, to build up. The Moshesh's Ford basalt type was erupted prior to the resultant phreatomagmatic events forming the lower volcaniclastic breccia.
- Full Text:
- Date Issued: 2000
- Authors: Surtees, Grant Bradley
- Date: 2000
- Subjects: Volcanism , Geology -- South Africa -- Eastern Cape -- Brosterlea Volcanic Complex , Geology -- South Africa -- Eastern Cape , Flood basalts , Geology, Structural -- South Africa , Formations (Geology) -- South Africa , Geology, Structural -- Maps , Geological mapping
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4944 , http://hdl.handle.net/10962/d1005556 , Volcanism , Geology -- South Africa -- Eastern Cape -- Brosterlea Volcanic Complex , Geology -- South Africa -- Eastern Cape , Flood basalts , Geology, Structural -- South Africa , Formations (Geology) -- South Africa , Geology, Structural -- Maps , Geological mapping
- Description: Detailed field mapping (Map, Appendix B) has been conducted in and around the boundaries of a 14x18km, volcanic complex 35km northeast of Molteno in the Eastern Cape Province, South Africa. The structure is interpreted as a subsidence structure, and is filled with two volcaniclastic breccias, numerous lava flows, a number of sedimentary facies, and lies on a base of Clarens Formation overlying Elliot Formation rocks. This is an important study because 'widespread, voluminous fields of basaltic breccias are very rare (see Hanson and Elliot, 1996) and this is the first time that this type of volcanic complex and its deposits have been described. Detailed analyses of the two volcaniclastic breccias revealed changes in colour, clast types, clast sizes, and degree of alteration over relatively short distances both vertically and laterally within a single breccia unit. The variation in clast sizes implies a lack of sorting of the breccias. The lower of the two volcaniclastic breccias fills the subsidence structure, and outcrops between the Stormberg sedimentary sequence and the overlying Drakensberg basalts and was produced from phreatomagmatic eruptions signalling the start of the break-up of Gondwanaland in the mid-Jurassic. The upper volcaniclastic breccia is interbedded with the flood basalts and is separated from the lower breccia by up to 100m of lava flows in places, it is finer-grained than the lower volcaniclastic breccia, and it extends over 10km south, and over 100km north from the volcanic complex. The upper breccia is inferred to have been transported from outside the study area, from a source presumably similar to the subsidence structure in the volcanic complex. The pyroclastic material forming the upper breccia was transported to the subsidence structure as a laharic debris flow, based on its poorly sorted, unwelded and matrix-supported appearance. However, both breccias are unlikely to have been derived from epiclastic reworking of lava flows as they contain glass shards which are atypical of those derived from the autoclastic component of lava flows. The breccias are therefore not "secondary" lahars. There is also no evidence of any palaeotopographic highs from which the breccias could have been derived as gravity-driven flows. Based on the occurrence of three, 1m thick lacustrine deposits, localised peperite, fluvial reworking of sandstone and breccia in an outcrop to the south of the subsidence structure, and channel-lags encountered only in the upper units of the Clarens Formation and only within the subsidence structure, the palaeoenvironment inferred for the subsidence structure is one of wet sediment, possibly a shallow lake, in a topographic depression fed by small streams. Magmatic intrusions below the subsidence structure heated the water-laden, partly consolidated Clarens Formation sandstones, causing the circulation of pore fluid which resulted in the precipitation of minerals forming pisoliths in the sandstones. Intruding magma mixed, nonexplosively, with the wet, unconsolidated sediments near the base of the Clarens Formation (at approximately 100m below the surface), forming fluidal peperite by a process of sediment fluidisation where magma replaces wet sediment and cools slowly enough to prevent the magma fracturing brittly. Formation of fluidal peperite may have been a precursor to the development of FCIs (Fuel Coolant Interactions) (Busby-Spera and White, 1987). The breccias may represent the products of FCIs and may be the erupted equivalents of the peperites, suggesting a possible genetic link between the two. The peperites may have given way to FCI eruptions due to a number of factors including the drying out of the sediments and/or an increase in the volume of intruded magma below the subsidence structure which may have resulted in a more explosive interaction between sediment and magma. Phreatic activity fragmented and erupted the Clarens Formation sandstone, and stream flows reworked the angular sandstone fragments, pisoliths and sand grains into channelised deposits. With an increase in magmatic activity below the subsidence structure, phreatic activity became phreatomagmatic. The wet, partly consolidated Clarens Formation, and underlying, fully consolidated Elliot Formation sediments were erupted and fragmented. Clasts and individual grains of these sediments were redeposited with juvenile and non-juvenile basaltic material probably by a combination of back fall, where clasts erupted into the air fell directly back into the structure, and backflow where material was erupted out of the structure, but immediately flowed back in as lahars. This material formed the lower volcaniclastic breccia. A fault plane is identified along the southwestern margin of the subsidence structure, and is believed to continue up the western margin to the northwestern corner. A large dolerite body has intruded along the inferred fault plane on the western margin of the structure, and may be related to the formation of the lower volcaniclastic breccia, either directly through fluidisation of wet sediment during its intrusion, or as a dyke extending upwards from a network of sill-like intrusions below the subsidence structure. Geochemical analysis of the Drakensberg basalt lava flows by Mitchell (1980) and Masokwane (1997) revealed four distinct basalt types; the Moshesh's Ford, the Tafelkop, the Roodehoek, and the Vaalkop basalts. Basalt clasts sampled from the lower volcaniclastic breccia were shown to belong to the Moshesh's Ford basalt type which does not outcrop in situ within the subsidence structure. This implies that the Moshesh's Ford basalts were emplaced prior to the formation of the lower volcaniclastic breccia, and may have acted as a "cap-rock" over the system, allowing pressure from the vaporised fluids, heated by intruding basalt, to build up. The Moshesh's Ford basalt type was erupted prior to the resultant phreatomagmatic events forming the lower volcaniclastic breccia.
- Full Text:
- Date Issued: 2000
Aspects of the ecology and reproductive biology of the limpet, Helcion pruinosus (Gastropoda : prosobranchia)
- Authors: Henninger, Tony Oskar
- Date: 2000
- Subjects: Prosobranchia , Limpets -- Reproduction , Limpets -- Ecology , Prosobranchia -- Ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5641 , http://hdl.handle.net/10962/d1005323 , Prosobranchia , Limpets -- Reproduction , Limpets -- Ecology , Prosobranchia -- Ecology
- Description: Helcion pruinosus, the rayed limpet, is found in the midshore region of the intertidal zone, (i.e. the Balanoid zone) of rocky shores, from Saldanha Bay to Sodwana Bay along the coast of South Africa. At Gonubie (32°57'S/25°01'E) this species of limpet was found under boulders, (when not feeding), and could reach average densities of 85/ m². The limpets prefer smooth boulders, avoiding those encrusted by coralline algae or boulders with a rough texture. There was no habitat segregation between adult and juvenile H. pruinosus, i.e. there was no sign of up-shore migration by larger individuals. Males out-numbered females by, on average 1.4 : 1, which was a similar sex ratio to that of the congeneric species, H. pectunculus (Gray, 996). Unlike H. pectunculus, there were no differences in shell lengths between males and females (p = 0.946 at Gonubie, south-east coast and p = 0.961 at Kommetjie, south-west coast; t-test). Shell height could also not be used as a criterion to differentiate between the sexes. The average maximum shell length of H. pruinosus at Gonubie and Kommetjie was 25 mm, but the maximum shell lengths found were 30 mm, (one individual in each case), on both the southeast coast and west coast. Growth occurred most rapidly in the first year of life, with individuals reaching 15 mm after 1 year. In the second year limpet growth slowed to only 7 mm. Sexual maturity was reached at a shell length of between 11 to 14 mm (at an age of 8 months to 1 year). The life-span of H. pruinosus was determined at 2.55 years on the south-east coast and 2.9 years on the south-west coast. Micro-growth bands were produced tidally. Growth occurred allometrically, i.e. shell length increased at a faster rate than shell height. The limpets foraged during low tide, at night, presumably feeding on epilithic algae on the boulders. A second smaller peak of limpet activity was often recorded during the day, when low tide coincided with dawn). More limpets (up to ten times more) were active at spring tides compared to neap tides. Limpet activity was greatest during the spring tides of autumn. During all seasons limpet activity peaked 30 minutes before low water, after which numbers decreased rapidly. All limpets had retreated beneath the boulders before being covered by the flooding tide. It was concluded that the limpets were responding to both endogenous and exogenous cues, but the actual stimulus for retreat could not be determined. The limpets did not return to a fixed scar nor did they return rigidly to a home site. H. pruinosus was found to be gonochoristic. Sexes could be separated, on dissection, according to the colour of their gonads (males had white gonads, whilst that of the females was olive-green). Gonads were present throughout the year in most individuals, i.e. totally spent animals were never observed. Reproductive seasonality was similar in west coast and south-east coast animals. The gonad indices of the west coast limpets were higher, (maximum of 35%), compared to that on the southeast coast, (25%). The animals were probably trickle spawners, with some individuals liberating gametes throughout the year. There was however synchrony in gametogenesis between male and female limpets on both the west coast and south-east coast lines. Gonad indices peaked in the summer months (October to December) with a second minor peak in April/May. These peaks occurred before the release of the gametes in spawning events. The gonad index was lowest in winter, (July). The ovaries were full of mature eggs (oocytes having a diameter of 200 to 250 ~) prior to spawning. The acinal wall thickness had been decreasing prior to spawning. After spawning there was an increase in previtellogenic eggs « 100 μm) in females, and an increase in the acinal wall thickness to indicate spermatogenesis. The two populations are subjected to different environmental conditions and the actual cue for stimulating the release of gametes could not be determined. Finally, a table of differences between H pruinosus and its sister species, H pectunculus was created to show the life-style of H pruinosus.
- Full Text:
- Date Issued: 2000
- Authors: Henninger, Tony Oskar
- Date: 2000
- Subjects: Prosobranchia , Limpets -- Reproduction , Limpets -- Ecology , Prosobranchia -- Ecology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5641 , http://hdl.handle.net/10962/d1005323 , Prosobranchia , Limpets -- Reproduction , Limpets -- Ecology , Prosobranchia -- Ecology
- Description: Helcion pruinosus, the rayed limpet, is found in the midshore region of the intertidal zone, (i.e. the Balanoid zone) of rocky shores, from Saldanha Bay to Sodwana Bay along the coast of South Africa. At Gonubie (32°57'S/25°01'E) this species of limpet was found under boulders, (when not feeding), and could reach average densities of 85/ m². The limpets prefer smooth boulders, avoiding those encrusted by coralline algae or boulders with a rough texture. There was no habitat segregation between adult and juvenile H. pruinosus, i.e. there was no sign of up-shore migration by larger individuals. Males out-numbered females by, on average 1.4 : 1, which was a similar sex ratio to that of the congeneric species, H. pectunculus (Gray, 996). Unlike H. pectunculus, there were no differences in shell lengths between males and females (p = 0.946 at Gonubie, south-east coast and p = 0.961 at Kommetjie, south-west coast; t-test). Shell height could also not be used as a criterion to differentiate between the sexes. The average maximum shell length of H. pruinosus at Gonubie and Kommetjie was 25 mm, but the maximum shell lengths found were 30 mm, (one individual in each case), on both the southeast coast and west coast. Growth occurred most rapidly in the first year of life, with individuals reaching 15 mm after 1 year. In the second year limpet growth slowed to only 7 mm. Sexual maturity was reached at a shell length of between 11 to 14 mm (at an age of 8 months to 1 year). The life-span of H. pruinosus was determined at 2.55 years on the south-east coast and 2.9 years on the south-west coast. Micro-growth bands were produced tidally. Growth occurred allometrically, i.e. shell length increased at a faster rate than shell height. The limpets foraged during low tide, at night, presumably feeding on epilithic algae on the boulders. A second smaller peak of limpet activity was often recorded during the day, when low tide coincided with dawn). More limpets (up to ten times more) were active at spring tides compared to neap tides. Limpet activity was greatest during the spring tides of autumn. During all seasons limpet activity peaked 30 minutes before low water, after which numbers decreased rapidly. All limpets had retreated beneath the boulders before being covered by the flooding tide. It was concluded that the limpets were responding to both endogenous and exogenous cues, but the actual stimulus for retreat could not be determined. The limpets did not return to a fixed scar nor did they return rigidly to a home site. H. pruinosus was found to be gonochoristic. Sexes could be separated, on dissection, according to the colour of their gonads (males had white gonads, whilst that of the females was olive-green). Gonads were present throughout the year in most individuals, i.e. totally spent animals were never observed. Reproductive seasonality was similar in west coast and south-east coast animals. The gonad indices of the west coast limpets were higher, (maximum of 35%), compared to that on the southeast coast, (25%). The animals were probably trickle spawners, with some individuals liberating gametes throughout the year. There was however synchrony in gametogenesis between male and female limpets on both the west coast and south-east coast lines. Gonad indices peaked in the summer months (October to December) with a second minor peak in April/May. These peaks occurred before the release of the gametes in spawning events. The gonad index was lowest in winter, (July). The ovaries were full of mature eggs (oocytes having a diameter of 200 to 250 ~) prior to spawning. The acinal wall thickness had been decreasing prior to spawning. After spawning there was an increase in previtellogenic eggs « 100 μm) in females, and an increase in the acinal wall thickness to indicate spermatogenesis. The two populations are subjected to different environmental conditions and the actual cue for stimulating the release of gametes could not be determined. Finally, a table of differences between H pruinosus and its sister species, H pectunculus was created to show the life-style of H pruinosus.
- Full Text:
- Date Issued: 2000
The nature and control of organic compounds in soda ash evaporate production
- Masemola, Patricia Mmoniemang
- Authors: Masemola, Patricia Mmoniemang
- Date: 2000
- Subjects: Organic compounds , Biotic communities , Sua Pan Soda Ash Project -- Botswana
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3902 , http://hdl.handle.net/10962/d1003961 , Organic compounds , Biotic communities , Sua Pan Soda Ash Project -- Botswana
- Description: Solar evaporite systems are man-managed ecosystems which are highly vulnerable to biological,physical and chemical disturbances. The problems encountered in such systems are in many cases found to be associated with the microbial ecology and the design of the system. This project focussed on investigating the nature of organic compounds contaminating soda ash produced at a solar evaporite production system located at Sua Pan in Botswana. Several years after the plant was commissioned, problems, including accumulation of total organic carbon (TOC) and discolouration of the soda ash product were encountered. The salt produced also retained high moisture content and was coloured pink. These phenomena impacted severely on the economic performance of the enterprise. This study was aimed at determining the origin and fate of these organic compounds within the system in order to elucidate the nature of the problem and also to conceptualise a remediation strategy suitable to reducing its impact. This was achieved by analysis of both dialysed and solvent extracts of the influent brine (well-brine), brine in the ponds (T-brine) and the bicarbonate filter cake. Although complete identification of the organic compounds isolated was not undertaken in this study, spectroscopic analysis of compounds isolated, by UV, IR, NMR and MS, strongly indicated that fulvic acids, a component of the influent well-brine organics, contribute to the organic contamination of the final product. Part of this component, however, is degraded during the ponding process. It was shown that an extracellular polysaccharide (EPS) produced by Dunaliella. spp., which proliferates in the evaporation ponds, contributes in a major way to the accumulation of TOC in the system. This was demonstrated by relating the sugar profile of carbohydrates isolated from the pond brine and final product, being arabinose, xylose, 2-o-methyl hexose, mannose, glucose and galactose. Studies reported show that EPS production was enhanced when algal cultures were exposed to stress conditions of high illumination, increasing salinity and temperature, and nitrogen limitation. Studies undertaken for the development of a remediation process for this system have shown that nutrient stripping and bacterial systems could be applied to deal with the dissolved TOC fraction, whereas adsorption systems could deal with the particulate fractions. Algal systems showed most potential for the removal of nutrients in the influent well-brine compared to chemical processes.Complete removal of ammonium and phosphorus removal efficiencies of pproximately 50% were achieved in an unoptimised pilot-scale Dunaliella-based HRAP. While similar effects were demonstrated for chemical processes, some economic constraints were noted. The potential of halophilic bacterial systems for the degradation of organic compounds in brine was also demonstrated. The limitations on the performance of such systems, associated with the low metabolic diversity, and poor immobilisation of physico-chemical processes were found to have a very low impact on the dissolved TOC fraction of the brine, the removal of the particulate material was found to result in a 35% TOC reduction in the final soda ash product and the production of a white final product.halobacteria, however, were noted. Although physico-chemical processes were found to have a very low impact on the dissolved TOC fraction of the brine, the removal of the particulate material was found to result in a 35% TOC reduction in the final soda ash product and the production of a white final product. Apart from a description of the microbial ecology of the ponds and the identification of major contributions to the TOC of the final product, a number of remediation strategies were evaluated and are described. These include chemical and biological stripping of nutrients sustaining microbial TOC production in the ponds, and also biological and physico-chemical processes for their removal once formed. Future studies to undertake the further development of these proposals has been described
- Full Text:
- Date Issued: 2000
- Authors: Masemola, Patricia Mmoniemang
- Date: 2000
- Subjects: Organic compounds , Biotic communities , Sua Pan Soda Ash Project -- Botswana
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3902 , http://hdl.handle.net/10962/d1003961 , Organic compounds , Biotic communities , Sua Pan Soda Ash Project -- Botswana
- Description: Solar evaporite systems are man-managed ecosystems which are highly vulnerable to biological,physical and chemical disturbances. The problems encountered in such systems are in many cases found to be associated with the microbial ecology and the design of the system. This project focussed on investigating the nature of organic compounds contaminating soda ash produced at a solar evaporite production system located at Sua Pan in Botswana. Several years after the plant was commissioned, problems, including accumulation of total organic carbon (TOC) and discolouration of the soda ash product were encountered. The salt produced also retained high moisture content and was coloured pink. These phenomena impacted severely on the economic performance of the enterprise. This study was aimed at determining the origin and fate of these organic compounds within the system in order to elucidate the nature of the problem and also to conceptualise a remediation strategy suitable to reducing its impact. This was achieved by analysis of both dialysed and solvent extracts of the influent brine (well-brine), brine in the ponds (T-brine) and the bicarbonate filter cake. Although complete identification of the organic compounds isolated was not undertaken in this study, spectroscopic analysis of compounds isolated, by UV, IR, NMR and MS, strongly indicated that fulvic acids, a component of the influent well-brine organics, contribute to the organic contamination of the final product. Part of this component, however, is degraded during the ponding process. It was shown that an extracellular polysaccharide (EPS) produced by Dunaliella. spp., which proliferates in the evaporation ponds, contributes in a major way to the accumulation of TOC in the system. This was demonstrated by relating the sugar profile of carbohydrates isolated from the pond brine and final product, being arabinose, xylose, 2-o-methyl hexose, mannose, glucose and galactose. Studies reported show that EPS production was enhanced when algal cultures were exposed to stress conditions of high illumination, increasing salinity and temperature, and nitrogen limitation. Studies undertaken for the development of a remediation process for this system have shown that nutrient stripping and bacterial systems could be applied to deal with the dissolved TOC fraction, whereas adsorption systems could deal with the particulate fractions. Algal systems showed most potential for the removal of nutrients in the influent well-brine compared to chemical processes.Complete removal of ammonium and phosphorus removal efficiencies of pproximately 50% were achieved in an unoptimised pilot-scale Dunaliella-based HRAP. While similar effects were demonstrated for chemical processes, some economic constraints were noted. The potential of halophilic bacterial systems for the degradation of organic compounds in brine was also demonstrated. The limitations on the performance of such systems, associated with the low metabolic diversity, and poor immobilisation of physico-chemical processes were found to have a very low impact on the dissolved TOC fraction of the brine, the removal of the particulate material was found to result in a 35% TOC reduction in the final soda ash product and the production of a white final product.halobacteria, however, were noted. Although physico-chemical processes were found to have a very low impact on the dissolved TOC fraction of the brine, the removal of the particulate material was found to result in a 35% TOC reduction in the final soda ash product and the production of a white final product. Apart from a description of the microbial ecology of the ponds and the identification of major contributions to the TOC of the final product, a number of remediation strategies were evaluated and are described. These include chemical and biological stripping of nutrients sustaining microbial TOC production in the ponds, and also biological and physico-chemical processes for their removal once formed. Future studies to undertake the further development of these proposals has been described
- Full Text:
- Date Issued: 2000
The use of indigenous macroinvertebrates and Daphnia pulex in acute toxicity testing
- Authors: Everitt, Victoria Jane
- Date: 2000
- Subjects: Water -- Pollution -- Toxicology , Toxicity testing , Daphnia pulex
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5795 , http://hdl.handle.net/10962/d1005483
- Description: Aquatic toxicology has been identified as a valuable tool in the identification and management of chemical pollution in aquatic ecosystems. Standardised methodologies for acute aquatic bioassays have been adopted from international agencies. As a result of these standard methods, the use of laboratory cultured organisms for toxicity testing has been more popular than that of indigenous field-caught organisms. Included in these adopted methods are those for the cultured crustacean Daphnia pUlex. D.pulex is adapted to living in standing water and the suitability of this species to determine toxic effects for South African riverine environments, which are largely flowing, has been questioned. Thus this thesis is a case-study ofthe use of D.pulex and indigenous site-specific macroinvertebrates as toxicity test organisms for setting acute water quality guidelines to protect aquatic ecosystems. The study highlights site-specific problems such as reference sites and organism identification. The acute tolerance of selected indigenous invertebrates was compared to that of D. pulex, using both a single-substance reference toxicant (zinc) and selected whole efiluents. The significance of source population and culture age as a potential source of biological variability between D.pulex cultures was also investigated. D.pulex cultures have been initiated in South Africa from females collected from a number of different local populations; also it is assumed that no genetic change (due to mutation) occurs within a D.pulex culture over time. In order to establish if source population and culture age are a source of biological variability between D.pulex experiments, the acute tolerJuce to zinc of two different D.pulex populations and three different generations within a population were compared. Due to experimental variability results were inconclusive, and differences in tolerance as a result of population difference or culture age could not be determined with confidence. The acute tolerance of D.pulex to a single reference chemical (zinc) and selected whole efiluents was compared to that of selected indigenous invertebrates. Acute 48 h D.pulex zinc tolerance (LC50 range: 0.22 - 0.60 mg/l Zn) was found to be more sensitive than acute 96 h tolerances shown by mayfly species A.fconurus peringueyi (Heptageniidae) (LC50: 17.42 mg/l Zn), Euthrauluselegans (Leptophlebiidae) (LC50: 0.98 mg/IZn), Ba~tidae (LC50: 0.94mg/IZn) and shrimp, Caradina nilotica (Atyidae) (LC50: 3.17 mg/l Zn). This result suggests that guidelines for zinc set using D.pulex will protect the selected indigenous invertebrates. Selected whole eftluents were not acutely toxic to either D.pulex or selected indigenous invertebrates. These experiments were used as a case study for method development regarding the comparative use of D.pulex and indigenous invertebrates in acute whole eftluent toxicity testing. Finally, it is recommended that a suite of indigenous organisms (e.g. macroinvertebrates, fish and algae), as well as laboratory cultured D.pulex, be used in the initial setting of guidelines and that D.pulex be used for routine compliance monitoring. It is futher recommended that a suite of available monitoring methods, such as chemical and biomonitoring methodologies, be used in conjuction with toxicity testing in water quality management.
- Full Text:
- Date Issued: 2000
- Authors: Everitt, Victoria Jane
- Date: 2000
- Subjects: Water -- Pollution -- Toxicology , Toxicity testing , Daphnia pulex
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5795 , http://hdl.handle.net/10962/d1005483
- Description: Aquatic toxicology has been identified as a valuable tool in the identification and management of chemical pollution in aquatic ecosystems. Standardised methodologies for acute aquatic bioassays have been adopted from international agencies. As a result of these standard methods, the use of laboratory cultured organisms for toxicity testing has been more popular than that of indigenous field-caught organisms. Included in these adopted methods are those for the cultured crustacean Daphnia pUlex. D.pulex is adapted to living in standing water and the suitability of this species to determine toxic effects for South African riverine environments, which are largely flowing, has been questioned. Thus this thesis is a case-study ofthe use of D.pulex and indigenous site-specific macroinvertebrates as toxicity test organisms for setting acute water quality guidelines to protect aquatic ecosystems. The study highlights site-specific problems such as reference sites and organism identification. The acute tolerance of selected indigenous invertebrates was compared to that of D. pulex, using both a single-substance reference toxicant (zinc) and selected whole efiluents. The significance of source population and culture age as a potential source of biological variability between D.pulex cultures was also investigated. D.pulex cultures have been initiated in South Africa from females collected from a number of different local populations; also it is assumed that no genetic change (due to mutation) occurs within a D.pulex culture over time. In order to establish if source population and culture age are a source of biological variability between D.pulex experiments, the acute tolerJuce to zinc of two different D.pulex populations and three different generations within a population were compared. Due to experimental variability results were inconclusive, and differences in tolerance as a result of population difference or culture age could not be determined with confidence. The acute tolerance of D.pulex to a single reference chemical (zinc) and selected whole efiluents was compared to that of selected indigenous invertebrates. Acute 48 h D.pulex zinc tolerance (LC50 range: 0.22 - 0.60 mg/l Zn) was found to be more sensitive than acute 96 h tolerances shown by mayfly species A.fconurus peringueyi (Heptageniidae) (LC50: 17.42 mg/l Zn), Euthrauluselegans (Leptophlebiidae) (LC50: 0.98 mg/IZn), Ba~tidae (LC50: 0.94mg/IZn) and shrimp, Caradina nilotica (Atyidae) (LC50: 3.17 mg/l Zn). This result suggests that guidelines for zinc set using D.pulex will protect the selected indigenous invertebrates. Selected whole eftluents were not acutely toxic to either D.pulex or selected indigenous invertebrates. These experiments were used as a case study for method development regarding the comparative use of D.pulex and indigenous invertebrates in acute whole eftluent toxicity testing. Finally, it is recommended that a suite of indigenous organisms (e.g. macroinvertebrates, fish and algae), as well as laboratory cultured D.pulex, be used in the initial setting of guidelines and that D.pulex be used for routine compliance monitoring. It is futher recommended that a suite of available monitoring methods, such as chemical and biomonitoring methodologies, be used in conjuction with toxicity testing in water quality management.
- Full Text:
- Date Issued: 2000
The solubility enhancement and the stability assessment of rifampicin, isoniazid and pyrazinamide in aqueous media
- Authors: Chen, Yu-Jen
- Date: 2000
- Subjects: Gel permeation chromatography , Rifampin , Isoniazid , Pyridazines
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4346 , http://hdl.handle.net/10962/d1005009 , Gel permeation chromatography , Rifampin , Isoniazid , Pyridazines
- Description: Tuberculosis (TB) is a highly contagious disease caused by the bacterium known as Mycobacterium tuberculosis which is widely spread in South Africa, especially in the rural areas of the Western Province. Rifampicin, isoniazid and pyrazinamide are the three most effective drugs against this organism. However, most of the current commercial anti-TB formulations are inconvenient to administrate. This results in patient non-compliance which has increased with incomplete tuberculosis treatment and further has intensified the mortality rate. The matter is especially severe amongst the paediatric and geriatric patients. Therefore, creating a "user-friendly" but non-alcoholic liquid formulation should improve the whole situation. The key to a successful formulation relies on sufficient concentrations of the drugs within the formulation together with acceptable stability of these drugs. Therefore, during the pre-formulation stage, the solubility and stability studies of rifampicin, isoniazid and pyrazinamide are to be conducted. Rifampicin, isoniazid and pyrazinamide were fully characterized and identified by means of spectroscopic and thermal techniques. A HPLC method for simultaneous analysis of the three drugs was developed and validated. This HPLC method was employed for all the solubility and stability assessments. Unbuffered HPLC water of pH value 7.01 was chosen as the aqueous solvent. This was decided after the stability of rifampicin, isoniazid and pyrazinamide was studied at a pH range of 2 to 10. The solubility and the stability studies of rifampicin, isoniazid, pyrazinamide, rifampicin with isoniazid, rifampicin with pyrazinamide, isoniazid with pyrazinamide and rifampicin combined with both isoniazid and pyrazinamide were performed in the presence of various agents. These agents can be categorized into three groups: the surfactants (poloxamer 188, poloxamer 407 and sorbitol) which could increase the intrinsic solubility or the drugs by altering the surface tensions of the aqueous solution medium, the suspending agents (carbopol 934 and carbopol 974P) which could enable the amount of dosage required to be homogeneously suspended in the formulation without considering the low intrinsic solubility factor of the drugs, and the complexing agents (ß-cyclodextrin, hydroxypropyl-ß-cyclodextrin and -cyclodextrin) which could initiated the inclusion complex between the host cyclodextrin and the drugs, thus further enhance the solubility of the drugs . The stability assessments were performed after 7-days stability trail with the HPLC method developed. Each drug/combination of drugs were stored in closed ampoules and subjected to 25, 40 and 60° C with or without nitrogen flushing while in the presence of the above mentioned agents. While assessing the solubility/stability of the drugs in the presence of the above mentioned surfactants, the phase-solubility curves indicate that both rifampicin and pyrazinamide fail to achieve the desired concentration. Moreover, the stability-time plots clearly indicate that these surfactants fail to enhance the general stabilities of the drugs. When the stabilizing effects of the above mentioned suspending agents were investigated, it was found that although the desired concentration could be easily accomplished by suspending the drug in the aqueous carbopol solutions, the stabilities of the different drug combinations were still below the regulatory level. Cyclodextrins are well known to form inclusion complexes with less polar drug molecules. The inclusion complexation could enhance both the solubility and the stability of the included drug molecules. The computer force field generated models of the cyclodextrin-drug were used to predict the complexation sites. The results indicated the all the inclusion complexation between the drugs and the cyclodextrins were favourable, but do not necessary protect the potential degradation sites of the drugs. The stability results confirmed the above findings as the cyclodextrins did not enhance the stability of the drugs. Various drug-drug interaction pathways were also predicted from the experimental observations which clearly indicated the stability reductions of these drugs in combination. This leads to the conclusion that a liquid formulation combining rifampicin, isoniazid and pyrazinamide should not initiate the use of aqueous solutions as the protic ions of the solution are able to initiate the degradation of these drugs.
- Full Text:
- Date Issued: 2000
- Authors: Chen, Yu-Jen
- Date: 2000
- Subjects: Gel permeation chromatography , Rifampin , Isoniazid , Pyridazines
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4346 , http://hdl.handle.net/10962/d1005009 , Gel permeation chromatography , Rifampin , Isoniazid , Pyridazines
- Description: Tuberculosis (TB) is a highly contagious disease caused by the bacterium known as Mycobacterium tuberculosis which is widely spread in South Africa, especially in the rural areas of the Western Province. Rifampicin, isoniazid and pyrazinamide are the three most effective drugs against this organism. However, most of the current commercial anti-TB formulations are inconvenient to administrate. This results in patient non-compliance which has increased with incomplete tuberculosis treatment and further has intensified the mortality rate. The matter is especially severe amongst the paediatric and geriatric patients. Therefore, creating a "user-friendly" but non-alcoholic liquid formulation should improve the whole situation. The key to a successful formulation relies on sufficient concentrations of the drugs within the formulation together with acceptable stability of these drugs. Therefore, during the pre-formulation stage, the solubility and stability studies of rifampicin, isoniazid and pyrazinamide are to be conducted. Rifampicin, isoniazid and pyrazinamide were fully characterized and identified by means of spectroscopic and thermal techniques. A HPLC method for simultaneous analysis of the three drugs was developed and validated. This HPLC method was employed for all the solubility and stability assessments. Unbuffered HPLC water of pH value 7.01 was chosen as the aqueous solvent. This was decided after the stability of rifampicin, isoniazid and pyrazinamide was studied at a pH range of 2 to 10. The solubility and the stability studies of rifampicin, isoniazid, pyrazinamide, rifampicin with isoniazid, rifampicin with pyrazinamide, isoniazid with pyrazinamide and rifampicin combined with both isoniazid and pyrazinamide were performed in the presence of various agents. These agents can be categorized into three groups: the surfactants (poloxamer 188, poloxamer 407 and sorbitol) which could increase the intrinsic solubility or the drugs by altering the surface tensions of the aqueous solution medium, the suspending agents (carbopol 934 and carbopol 974P) which could enable the amount of dosage required to be homogeneously suspended in the formulation without considering the low intrinsic solubility factor of the drugs, and the complexing agents (ß-cyclodextrin, hydroxypropyl-ß-cyclodextrin and -cyclodextrin) which could initiated the inclusion complex between the host cyclodextrin and the drugs, thus further enhance the solubility of the drugs . The stability assessments were performed after 7-days stability trail with the HPLC method developed. Each drug/combination of drugs were stored in closed ampoules and subjected to 25, 40 and 60° C with or without nitrogen flushing while in the presence of the above mentioned agents. While assessing the solubility/stability of the drugs in the presence of the above mentioned surfactants, the phase-solubility curves indicate that both rifampicin and pyrazinamide fail to achieve the desired concentration. Moreover, the stability-time plots clearly indicate that these surfactants fail to enhance the general stabilities of the drugs. When the stabilizing effects of the above mentioned suspending agents were investigated, it was found that although the desired concentration could be easily accomplished by suspending the drug in the aqueous carbopol solutions, the stabilities of the different drug combinations were still below the regulatory level. Cyclodextrins are well known to form inclusion complexes with less polar drug molecules. The inclusion complexation could enhance both the solubility and the stability of the included drug molecules. The computer force field generated models of the cyclodextrin-drug were used to predict the complexation sites. The results indicated the all the inclusion complexation between the drugs and the cyclodextrins were favourable, but do not necessary protect the potential degradation sites of the drugs. The stability results confirmed the above findings as the cyclodextrins did not enhance the stability of the drugs. Various drug-drug interaction pathways were also predicted from the experimental observations which clearly indicated the stability reductions of these drugs in combination. This leads to the conclusion that a liquid formulation combining rifampicin, isoniazid and pyrazinamide should not initiate the use of aqueous solutions as the protic ions of the solution are able to initiate the degradation of these drugs.
- Full Text:
- Date Issued: 2000
Environmental influences on the daytime vertical distribution of Cape hakes and implications for demersal trawl estimates of hake abundance off the west coast of South Africa
- Authors: Maree, R C
- Date: 2000
- Subjects: Hake , Fisheries -- Environmental aspects -- South Africa , Fisheries -- South Africa , Trawls and trawling
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5278 , http://hdl.handle.net/10962/d1005122
- Description: The demersal fishery off the west coast of South Africa experiences decreased catches per unit effort of hake, Merluccius capensis and M. paradoxus, following the onset of strong south easterly winds. Research has demonstrated that, during daylight hours, Cape hakes migrate vertically in the water column in response to strong south easterly winds, decreasing their availability to the bottom trawl. Hydroacoustic, trawl and environmental data were collected off the West Coast during both calm and wind-swept periods in an attempt to understand the forces that initiate this behaviour, its spatial variability and the implications for demersal trawl estimates of abundance. Near-bottom currents appear to be the primary factor influencing the vertical distribution of the demersal fish community, of which hake constitutes a large proportion, during daylight hours. Correlation between wind and near-bottom currents suggest that the poleward component of the currents increase in velocity within eight hours following the onset of south easterly winds. The fish avoid boundary layers where currents change direction and speed dramatically, and seem to concentrate in waters with relatively stable current regimes. This result questions the assumption of CPUE-based assessment models that hake availability to the bottom trawl is constant or varies randomly. The incorporation of acoustic assessment techniques to demersal surveys has potential, but may be most valuable by supplementing swept-area estimates of abundance, since the sampling efficiency of these methods varies within the water column. The incorporation of wind indices and gear performance data to Cape hake assessment models have been identified as useful considerations for the future.
- Full Text:
- Date Issued: 2000
- Authors: Maree, R C
- Date: 2000
- Subjects: Hake , Fisheries -- Environmental aspects -- South Africa , Fisheries -- South Africa , Trawls and trawling
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5278 , http://hdl.handle.net/10962/d1005122
- Description: The demersal fishery off the west coast of South Africa experiences decreased catches per unit effort of hake, Merluccius capensis and M. paradoxus, following the onset of strong south easterly winds. Research has demonstrated that, during daylight hours, Cape hakes migrate vertically in the water column in response to strong south easterly winds, decreasing their availability to the bottom trawl. Hydroacoustic, trawl and environmental data were collected off the West Coast during both calm and wind-swept periods in an attempt to understand the forces that initiate this behaviour, its spatial variability and the implications for demersal trawl estimates of abundance. Near-bottom currents appear to be the primary factor influencing the vertical distribution of the demersal fish community, of which hake constitutes a large proportion, during daylight hours. Correlation between wind and near-bottom currents suggest that the poleward component of the currents increase in velocity within eight hours following the onset of south easterly winds. The fish avoid boundary layers where currents change direction and speed dramatically, and seem to concentrate in waters with relatively stable current regimes. This result questions the assumption of CPUE-based assessment models that hake availability to the bottom trawl is constant or varies randomly. The incorporation of acoustic assessment techniques to demersal surveys has potential, but may be most valuable by supplementing swept-area estimates of abundance, since the sampling efficiency of these methods varies within the water column. The incorporation of wind indices and gear performance data to Cape hake assessment models have been identified as useful considerations for the future.
- Full Text:
- Date Issued: 2000
The structure and function of the gametes of the striped field mouse (Rhabdomys pumilio)
- Authors: Tinney, Gregory Michael
- Date: 2000
- Subjects: Gametes , Microtus , Mice
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5774 , http://hdl.handle.net/10962/d1005462 , Gametes , Microtus , Mice
- Description: This study was initiated in an attempt toadd the four-striped field mouse (Rhabdomys pumilio) to the small group of mammals that are used to study and develop assisted reproductive technologies. To accomplish this, a complete knowledge of both the male and female gametes was necessary, as well as a repeatable and successful IVF protocol. The gametes of the field mouse, both the falciformspermand the mature oocytes, were shown to be similar in several respects to those of many other rodent species. The induction of both the capacitated state and the acrosome reaction in the sperm were readily achieved. The success of retrieving mature oocytes was very low, with the rare occurrence of polar bodies within ovulated oocytes. The difficulties with oocytes was either related to the lack of a regular oestrous cycle, or to the hormonal regime used to induce superovulation. Although several protocols were used to accomplish superovulation in this species, it was seldom achieved. In in vitro fertilization trials, sperm were found to attach to both the cumulus oophorus and the zona pellucida of the oocytes. However, fertilization was never accomplished. This failure to achieve fertilization was probably related to the immaturity of the oocytes. Without further studies on Rhabdomys pumilio and further attempts at accomplishing in vitro fertilization, it would seem that this species would not easily be introduced as an animalmodelfor assisted reproduction.
- Full Text:
- Date Issued: 2000
- Authors: Tinney, Gregory Michael
- Date: 2000
- Subjects: Gametes , Microtus , Mice
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5774 , http://hdl.handle.net/10962/d1005462 , Gametes , Microtus , Mice
- Description: This study was initiated in an attempt toadd the four-striped field mouse (Rhabdomys pumilio) to the small group of mammals that are used to study and develop assisted reproductive technologies. To accomplish this, a complete knowledge of both the male and female gametes was necessary, as well as a repeatable and successful IVF protocol. The gametes of the field mouse, both the falciformspermand the mature oocytes, were shown to be similar in several respects to those of many other rodent species. The induction of both the capacitated state and the acrosome reaction in the sperm were readily achieved. The success of retrieving mature oocytes was very low, with the rare occurrence of polar bodies within ovulated oocytes. The difficulties with oocytes was either related to the lack of a regular oestrous cycle, or to the hormonal regime used to induce superovulation. Although several protocols were used to accomplish superovulation in this species, it was seldom achieved. In in vitro fertilization trials, sperm were found to attach to both the cumulus oophorus and the zona pellucida of the oocytes. However, fertilization was never accomplished. This failure to achieve fertilization was probably related to the immaturity of the oocytes. Without further studies on Rhabdomys pumilio and further attempts at accomplishing in vitro fertilization, it would seem that this species would not easily be introduced as an animalmodelfor assisted reproduction.
- Full Text:
- Date Issued: 2000
Enzymes with biocatalytic potential from Sorghum bicolor
- Nganwa, Patience Jennifer Kengyeya
- Authors: Nganwa, Patience Jennifer Kengyeya
- Date: 2000
- Subjects: Enzymes , Sorghum
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3908 , http://hdl.handle.net/10962/d1003967 , Enzymes , Sorghum
- Description: Sorghum is a staple food in the semi-arid tropics of Asia and Africa, sustaining the lives of the poorest rural people. This project set out to improve the potential economic value of Sorghum bicolor as a crop. The task was undertaken by screening for selected enzymes in the plant that would have a potential market for use in industrial applications and in biotransformations, specifically proteases, polyphenol oxidases and peroxidases. Asurveywas conducted using standard enzyme assays and crude plant extracts, to determine whether the selected enzymes were present. Grain tissue did not appear to have significant protease or polyphenoloxidase activity, but high levels of peroxidases were detected, withthe young grain extracts showing more activity(4.63U/mL)thanripegrain extracts (0.62 U/mL). Leaf tissue extracts contained low levels of protease activity, a considerable amount of polyphenol oxidase (0.127 U/mL), and peroxidase (4.7 U/mL) activities comparable with that found in grain tissue. Root tissue extract was found to contain the highest levels of peroxidase activity (7.8 U/mL) compared to the other extracts. Therefore, sorghum peroxidase from the root was isolated, purified, characterized and applied to biotransformation reactions. Different sorghum strains,withvaryinggraincolour, (Zimbabwe - bronze, Seredo - brown and Epurpur - cream/white) were investigated for the presence of polyphenol oxidase and peroxidase activities. Results of spectrophotometric analysis showed that the enzymes did not appear to be strain specific. However, gel electrophoresis analysis revealed differences in band patterns among the strains. Partial purification of sorghum root peroxidase was achieved after centrifugation, extraction with polyvinylpolypyrrolidone (PVPP), ultrafiltration, and hydrophobic chromatography with phenyl Sepharose, followed by polyacrylamidegelelectrophoresis (PAGE). The specific activity of the 5-fold purified enzyme was found to be 122.3 U/mg. After PAGE analysis, two bands with molecular weights of approximately 30 000 and 40 000 were detected, which compares well with horse radish peroxidase (HRP) which has a molecular weight of approximately 44 000. The colour intensity of the bands in the activity gels indicated that sorghum root peroxidase had apparently higher levels of peroxidase activity than commercial horseradish peroxidase (HRP). Characterizationexperiments revealed that sorghumroot peroxidase is active over a broad temperature range and remains active at temperatures up to 100°C. It also has a broad substrate range. The optimum pH of the enzyme was found to be pH 5 - 6. Under standardized assay conditions, the optimal substrate concentration, using o-dianisidine as substrate, was 50 mM, and the optimal H2O2 concentration under these conditions was found to be 100 mM. Sorghum root peroxidase was applied in a preliminary investigation into the oxidative biotransformationof a number of aromatic compounds. The products obtained were comparable withthose whenthe compounds are reacted with HRP which is the most commonly used commercial peroxidase and has been extensively studied. However, HRP is relatively costly, and the use of peroxidase from sorghum roots as an alternative source, appears to be promising. A patent has been provisionally registered, covering application of sorghum root peroxidase for biotransformations.
- Full Text:
- Date Issued: 2000
- Authors: Nganwa, Patience Jennifer Kengyeya
- Date: 2000
- Subjects: Enzymes , Sorghum
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3908 , http://hdl.handle.net/10962/d1003967 , Enzymes , Sorghum
- Description: Sorghum is a staple food in the semi-arid tropics of Asia and Africa, sustaining the lives of the poorest rural people. This project set out to improve the potential economic value of Sorghum bicolor as a crop. The task was undertaken by screening for selected enzymes in the plant that would have a potential market for use in industrial applications and in biotransformations, specifically proteases, polyphenol oxidases and peroxidases. Asurveywas conducted using standard enzyme assays and crude plant extracts, to determine whether the selected enzymes were present. Grain tissue did not appear to have significant protease or polyphenoloxidase activity, but high levels of peroxidases were detected, withthe young grain extracts showing more activity(4.63U/mL)thanripegrain extracts (0.62 U/mL). Leaf tissue extracts contained low levels of protease activity, a considerable amount of polyphenol oxidase (0.127 U/mL), and peroxidase (4.7 U/mL) activities comparable with that found in grain tissue. Root tissue extract was found to contain the highest levels of peroxidase activity (7.8 U/mL) compared to the other extracts. Therefore, sorghum peroxidase from the root was isolated, purified, characterized and applied to biotransformation reactions. Different sorghum strains,withvaryinggraincolour, (Zimbabwe - bronze, Seredo - brown and Epurpur - cream/white) were investigated for the presence of polyphenol oxidase and peroxidase activities. Results of spectrophotometric analysis showed that the enzymes did not appear to be strain specific. However, gel electrophoresis analysis revealed differences in band patterns among the strains. Partial purification of sorghum root peroxidase was achieved after centrifugation, extraction with polyvinylpolypyrrolidone (PVPP), ultrafiltration, and hydrophobic chromatography with phenyl Sepharose, followed by polyacrylamidegelelectrophoresis (PAGE). The specific activity of the 5-fold purified enzyme was found to be 122.3 U/mg. After PAGE analysis, two bands with molecular weights of approximately 30 000 and 40 000 were detected, which compares well with horse radish peroxidase (HRP) which has a molecular weight of approximately 44 000. The colour intensity of the bands in the activity gels indicated that sorghum root peroxidase had apparently higher levels of peroxidase activity than commercial horseradish peroxidase (HRP). Characterizationexperiments revealed that sorghumroot peroxidase is active over a broad temperature range and remains active at temperatures up to 100°C. It also has a broad substrate range. The optimum pH of the enzyme was found to be pH 5 - 6. Under standardized assay conditions, the optimal substrate concentration, using o-dianisidine as substrate, was 50 mM, and the optimal H2O2 concentration under these conditions was found to be 100 mM. Sorghum root peroxidase was applied in a preliminary investigation into the oxidative biotransformationof a number of aromatic compounds. The products obtained were comparable withthose whenthe compounds are reacted with HRP which is the most commonly used commercial peroxidase and has been extensively studied. However, HRP is relatively costly, and the use of peroxidase from sorghum roots as an alternative source, appears to be promising. A patent has been provisionally registered, covering application of sorghum root peroxidase for biotransformations.
- Full Text:
- Date Issued: 2000
The biology of commercially important fish species and a preliminary assessment of the fisheries potential of Katse Dam, Lesotho
- Authors: Nthimo, Mokitinyane Francis
- Date: 2000
- Subjects: Fishes -- Lesotho -- Katse dam , Fishes -- Physiology , Rainbow trout , Barbus aeneus , Labeo , Katse dam (Lesotho) , Fisheries -- Lesotho -- Katse dam , Fishery management -- Lesotho
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5238 , http://hdl.handle.net/10962/d1005081 , Fishes -- Lesotho -- Katse dam , Fishes -- Physiology , Rainbow trout , Barbus aeneus , Labeo , Katse dam (Lesotho) , Fisheries -- Lesotho -- Katse dam , Fishery management -- Lesotho
- Description: The construction of the Katse dam was completed in 1996. The dam started filling in 1995 and reached full capacity in early 1998. It forms part of Phase 1A of the Lesotho Highlands Water Project (LHWP). The main aim of the project is to provide revenue to Lesotho, by transferring water from the catchment of the Senqu (Orange) River in Lesotho to South Africa’s major industrial and population centres. During the implementation of the project, an estimated 130 people were displaced. However, the most serious impact has been the loss of the traditional way of life in the form of arable and grazing land as a consequence of inundation. One of the obligations of the project is to ensure that the standard of living of those affected by the project is not impaired. The Lesotho Highlands Development Authority identified a number of rural development projects, which included fisheries development. This study is an integral part of fisheries development in Lesotho. The aim of this study was to gain an understanding of the biology and the demographics of the fish species in the lake. This information would serve as the basis for the development of a management plan for the sustainable utilisation of the fisheries resources. To achieve this aim, the following specific objectives were addressed: 1. Investigation of the biology of the three principal species. 2. Description of the key population parameters (growth, mortality & recruitment). 3. Investigation of the distribution and relative abundance of the three species. The three principal species in the Katse dam are rainbow trout, Oncorhynchus mykiss, and the two cyprinids, Barbus aeneus and Labeo capensis. Sectioned otoliths were used to age O. mykiss while both otoliths and scales were used to age B. aeneus and L. capensis. Marginal zone analysis revealed that slow growth was experienced in winter for the three species. The maximum-recorded age for both B. aeneus and L. capensis was 12 years while O. mykiss reached 4 years. There was no significant difference in growth rates of the different sexes and growth was best described by the 3 parameter Von-Bertalanfy growth model as Lt = 603[1-e⁻°·¹⁵⁽t ⁺ °·°³⁾] for B. aeneus, Lt = 526[1-e⁻°·²¹⁽t ⁺ °·⁹⁾] for O. mykiss and Lt = 521[1-e⁻°·¹⁷⁽t ⁺ °·²¹⁾] for L.capensis. Male and female O. mykiss attained 50% sexual maturity (Lm₅₀) at 235 and 275mm FL, respectively. There was no difference in Lm₅₀ for male and female B. aeneus and L. capensis. B. aeneus reached sexual maturity at 285mm FL while L. capensis reached sexual maturity at 244mm. Both cyprinid species spawned in summer (November to January) while O. mykiss spawned in winter (May to August). The mean total mortality rate (Z) estimated from catch curves and Butterworth et al (1989) equation was 0.72 yr⁻¹ for B. aeneus, 0.62 yr⁻¹ for L. capensis and 1.32 yr⁻¹ for O. mykiss. The estimate of natural mortality was 0.41 yr⁻¹ for both B. aeneus and L. capensis and 0.81yr⁻¹ for O. mykiss.
- Full Text:
- Date Issued: 2000
- Authors: Nthimo, Mokitinyane Francis
- Date: 2000
- Subjects: Fishes -- Lesotho -- Katse dam , Fishes -- Physiology , Rainbow trout , Barbus aeneus , Labeo , Katse dam (Lesotho) , Fisheries -- Lesotho -- Katse dam , Fishery management -- Lesotho
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5238 , http://hdl.handle.net/10962/d1005081 , Fishes -- Lesotho -- Katse dam , Fishes -- Physiology , Rainbow trout , Barbus aeneus , Labeo , Katse dam (Lesotho) , Fisheries -- Lesotho -- Katse dam , Fishery management -- Lesotho
- Description: The construction of the Katse dam was completed in 1996. The dam started filling in 1995 and reached full capacity in early 1998. It forms part of Phase 1A of the Lesotho Highlands Water Project (LHWP). The main aim of the project is to provide revenue to Lesotho, by transferring water from the catchment of the Senqu (Orange) River in Lesotho to South Africa’s major industrial and population centres. During the implementation of the project, an estimated 130 people were displaced. However, the most serious impact has been the loss of the traditional way of life in the form of arable and grazing land as a consequence of inundation. One of the obligations of the project is to ensure that the standard of living of those affected by the project is not impaired. The Lesotho Highlands Development Authority identified a number of rural development projects, which included fisheries development. This study is an integral part of fisheries development in Lesotho. The aim of this study was to gain an understanding of the biology and the demographics of the fish species in the lake. This information would serve as the basis for the development of a management plan for the sustainable utilisation of the fisheries resources. To achieve this aim, the following specific objectives were addressed: 1. Investigation of the biology of the three principal species. 2. Description of the key population parameters (growth, mortality & recruitment). 3. Investigation of the distribution and relative abundance of the three species. The three principal species in the Katse dam are rainbow trout, Oncorhynchus mykiss, and the two cyprinids, Barbus aeneus and Labeo capensis. Sectioned otoliths were used to age O. mykiss while both otoliths and scales were used to age B. aeneus and L. capensis. Marginal zone analysis revealed that slow growth was experienced in winter for the three species. The maximum-recorded age for both B. aeneus and L. capensis was 12 years while O. mykiss reached 4 years. There was no significant difference in growth rates of the different sexes and growth was best described by the 3 parameter Von-Bertalanfy growth model as Lt = 603[1-e⁻°·¹⁵⁽t ⁺ °·°³⁾] for B. aeneus, Lt = 526[1-e⁻°·²¹⁽t ⁺ °·⁹⁾] for O. mykiss and Lt = 521[1-e⁻°·¹⁷⁽t ⁺ °·²¹⁾] for L.capensis. Male and female O. mykiss attained 50% sexual maturity (Lm₅₀) at 235 and 275mm FL, respectively. There was no difference in Lm₅₀ for male and female B. aeneus and L. capensis. B. aeneus reached sexual maturity at 285mm FL while L. capensis reached sexual maturity at 244mm. Both cyprinid species spawned in summer (November to January) while O. mykiss spawned in winter (May to August). The mean total mortality rate (Z) estimated from catch curves and Butterworth et al (1989) equation was 0.72 yr⁻¹ for B. aeneus, 0.62 yr⁻¹ for L. capensis and 1.32 yr⁻¹ for O. mykiss. The estimate of natural mortality was 0.41 yr⁻¹ for both B. aeneus and L. capensis and 0.81yr⁻¹ for O. mykiss.
- Full Text:
- Date Issued: 2000
Distributed authentication for resource control
- Authors: Burdis, Keith Robert
- Date: 2000
- Subjects: Computers -- Access control , Data protection , Computer networks -- Security measures , Electronic data processing departments -- Security measures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4630 , http://hdl.handle.net/10962/d1006512 , Computers -- Access control , Data protection , Computer networks -- Security measures , Electronic data processing departments -- Security measures
- Description: This thesis examines distributed authentication in the process of controlling computing resources. We investigate user sign-on and two of the main authentication technologies that can be used to control a resource through authentication and providing additional security services. The problems with the existing sign-on scenario are that users have too much credential information to manage and are prompted for this information too often. Single Sign-On (SSO) is a viable solution to this problem if physical procedures are introduced to minimise the risks associated with its use. The Generic Security Services API (GSS-API) provides security services in a manner in- dependent of the environment in which these security services are used, encapsulating security functionality and insulating users from changes in security technology. The un- derlying security functionality is provided by GSS-API mechanisms. We developed the Secure Remote Password GSS-API Mechanism (SRPGM) to provide a mechanism that has low infrastructure requirements, is password-based and does not require the use of long-term asymmetric keys. We provide implementations of the Java GSS-API bindings and the LIPKEY and SRPGM GSS-API mechanisms. The Secure Authentication and Security Layer (SASL) provides security to connection- based Internet protocols. After finding deficiencies in existing SASL mechanisms we de- veloped the Secure Remote Password SASL mechanism (SRP-SASL) that provides strong password-based authentication and countermeasures against known attacks, while still be- ing simple and easy to implement. We provide implementations of the Java SASL binding and several SASL mechanisms, including SRP-SASL.
- Full Text:
- Date Issued: 2000
- Authors: Burdis, Keith Robert
- Date: 2000
- Subjects: Computers -- Access control , Data protection , Computer networks -- Security measures , Electronic data processing departments -- Security measures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4630 , http://hdl.handle.net/10962/d1006512 , Computers -- Access control , Data protection , Computer networks -- Security measures , Electronic data processing departments -- Security measures
- Description: This thesis examines distributed authentication in the process of controlling computing resources. We investigate user sign-on and two of the main authentication technologies that can be used to control a resource through authentication and providing additional security services. The problems with the existing sign-on scenario are that users have too much credential information to manage and are prompted for this information too often. Single Sign-On (SSO) is a viable solution to this problem if physical procedures are introduced to minimise the risks associated with its use. The Generic Security Services API (GSS-API) provides security services in a manner in- dependent of the environment in which these security services are used, encapsulating security functionality and insulating users from changes in security technology. The un- derlying security functionality is provided by GSS-API mechanisms. We developed the Secure Remote Password GSS-API Mechanism (SRPGM) to provide a mechanism that has low infrastructure requirements, is password-based and does not require the use of long-term asymmetric keys. We provide implementations of the Java GSS-API bindings and the LIPKEY and SRPGM GSS-API mechanisms. The Secure Authentication and Security Layer (SASL) provides security to connection- based Internet protocols. After finding deficiencies in existing SASL mechanisms we de- veloped the Secure Remote Password SASL mechanism (SRP-SASL) that provides strong password-based authentication and countermeasures against known attacks, while still be- ing simple and easy to implement. We provide implementations of the Java SASL binding and several SASL mechanisms, including SRP-SASL.
- Full Text:
- Date Issued: 2000
Observations of selective feeding of the aphid, Sitobion yakini (eastop) on leaf blades of barley (Hordeum vulgare L)
- Authors: Matsiliza, Babalwa
- Date: 2000
- Subjects: Aphids , Phloem , Barley
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4212 , http://hdl.handle.net/10962/d1003781 , Aphids , Phloem , Barley
- Description: Penetration of leaves of barley (Hordeum vulgare L.) plants grown under normal conditions and those exposed to physiological stress, by the aphid, Sitobion yakini was investigated using light and electron microscope techniques. This was carried out to determine if there was evidence of preferential feeding on either thin- or thick-walled sieve tubes in the barley leaf. Under both stress and non-stress conditions, preliminary results of an electron microscope investigation showed that penetration of the epidermis and mesophyll was largely intercellular, becoming partly intercellular and in part intracellular inside the vascular bundle. A total of 317 stylets and stylet tracks were encountered during the examination of 2000 serial sections. In non-stressed plant material, 293 (92%) terminated in thin-walled sieve tubes and only 24 (8%) in thick-walled sieve tubes. Investigation of 1000 serial sections using stressed plant material showed, that 84 of 89 (94%) stylets and stylet tracks encountered terminated in thin-walled sieve tubes. Furthermore, 90 of 94 (96%) stylets and stylet tracks encountered in 1000 serial sections from the second experiment of control non-stressed plant material (control) terminated in thin-walled sieve tubes. The thin-walled sieve tubes were significantly more visited (probed) by the aphid than the thick-walled sieve tubes. Under stress conditions, 50 of 89 (56%) stylets and stylet tracks which terminated in thin-walled sieve tubes were associated with the small longitudinal bundles. Under normal conditions, 65 of 94 (69%) stylets and stylet tracks which terminated in thin-walled sieve tubes were associated with the small longitudinal bundles. There were no significant differences on the number of probes of sieve elements between the two treatments. These data suggest that the aphid S. yakini feeds preferentially on the thin-walled sieve tubes of the small longitudinal vascular bundles in plants grown under normal conditions and those exposed to physiological stress, such as water stress. This further suggests that the thin-walled sieve tubes in barley leaf blades are more attractive to the aphid and are probably most functional in terms of phloem loading and transport.
- Full Text:
- Date Issued: 2000
- Authors: Matsiliza, Babalwa
- Date: 2000
- Subjects: Aphids , Phloem , Barley
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4212 , http://hdl.handle.net/10962/d1003781 , Aphids , Phloem , Barley
- Description: Penetration of leaves of barley (Hordeum vulgare L.) plants grown under normal conditions and those exposed to physiological stress, by the aphid, Sitobion yakini was investigated using light and electron microscope techniques. This was carried out to determine if there was evidence of preferential feeding on either thin- or thick-walled sieve tubes in the barley leaf. Under both stress and non-stress conditions, preliminary results of an electron microscope investigation showed that penetration of the epidermis and mesophyll was largely intercellular, becoming partly intercellular and in part intracellular inside the vascular bundle. A total of 317 stylets and stylet tracks were encountered during the examination of 2000 serial sections. In non-stressed plant material, 293 (92%) terminated in thin-walled sieve tubes and only 24 (8%) in thick-walled sieve tubes. Investigation of 1000 serial sections using stressed plant material showed, that 84 of 89 (94%) stylets and stylet tracks encountered terminated in thin-walled sieve tubes. Furthermore, 90 of 94 (96%) stylets and stylet tracks encountered in 1000 serial sections from the second experiment of control non-stressed plant material (control) terminated in thin-walled sieve tubes. The thin-walled sieve tubes were significantly more visited (probed) by the aphid than the thick-walled sieve tubes. Under stress conditions, 50 of 89 (56%) stylets and stylet tracks which terminated in thin-walled sieve tubes were associated with the small longitudinal bundles. Under normal conditions, 65 of 94 (69%) stylets and stylet tracks which terminated in thin-walled sieve tubes were associated with the small longitudinal bundles. There were no significant differences on the number of probes of sieve elements between the two treatments. These data suggest that the aphid S. yakini feeds preferentially on the thin-walled sieve tubes of the small longitudinal vascular bundles in plants grown under normal conditions and those exposed to physiological stress, such as water stress. This further suggests that the thin-walled sieve tubes in barley leaf blades are more attractive to the aphid and are probably most functional in terms of phloem loading and transport.
- Full Text:
- Date Issued: 2000
The implementation of a core architecture for geophysical data acquisition
- Authors: Heasman, Ray Edward
- Date: 2000
- Subjects: Geophysics -- Data processing , Computer software -- Development , Seismometers , Computer input-output equipment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5471 , http://hdl.handle.net/10962/d1005256 , Geophysics -- Data processing , Computer software -- Development , Seismometers , Computer input-output equipment
- Description: This thesis describes the design, development and implementation of the core hardware and software of a modular data acquisition system for geophysical data collection. The primary application for this system is the acquisition and realtime processing of seismic data captured in mines. This system will be used by a commercial supplier of seismic instrumentation, ISS International, as a base architecture for the development of future products. The hardware and software has been designed to be extendable and support distributed processing. The IEEE-1394 High Performance Serial Bus is used to communicate with other CPU modules or peripherals. The software includes a pre-emptive multitasking microkernel, an asynchronous mailbox-based message passing communications system, and a functional IEEE-1394 protocol stack. The reasons for the end design and implementation decisions are given, and the problems encountered in the development of this system are described. A critical assessment of the match between the requirements for the project and the functionality of the implementation is made.
- Full Text:
- Date Issued: 2000
- Authors: Heasman, Ray Edward
- Date: 2000
- Subjects: Geophysics -- Data processing , Computer software -- Development , Seismometers , Computer input-output equipment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5471 , http://hdl.handle.net/10962/d1005256 , Geophysics -- Data processing , Computer software -- Development , Seismometers , Computer input-output equipment
- Description: This thesis describes the design, development and implementation of the core hardware and software of a modular data acquisition system for geophysical data collection. The primary application for this system is the acquisition and realtime processing of seismic data captured in mines. This system will be used by a commercial supplier of seismic instrumentation, ISS International, as a base architecture for the development of future products. The hardware and software has been designed to be extendable and support distributed processing. The IEEE-1394 High Performance Serial Bus is used to communicate with other CPU modules or peripherals. The software includes a pre-emptive multitasking microkernel, an asynchronous mailbox-based message passing communications system, and a functional IEEE-1394 protocol stack. The reasons for the end design and implementation decisions are given, and the problems encountered in the development of this system are described. A critical assessment of the match between the requirements for the project and the functionality of the implementation is made.
- Full Text:
- Date Issued: 2000
The structure and microbiology of floating sulphide oxidising biofilms
- Authors: Gilfillan, Joanne Criseyde
- Date: 2000
- Subjects: Biofilms , Sulfides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3903 , http://hdl.handle.net/10962/d1003962 , Biofilms , Sulfides
- Description: Floating sulphur biofilms are observed as surface layers in numerous aquatic sulphide-rich environments, and apparently play an important role in the cycling of sulphur in its various oxidation states. In addition to the conversion of sulphide to sulphur and/or sulphate species, it has been suspected that subsequent reduction back to sulphide may occur within the floating sulphur biofi1m in organic-rich environments. The use of sulphur biofilms for the harvesting of elemental sulphur from wastewater treatment systems has also been suggested. There is, however, little documented information in the literature on the structure of floating sulphur biofilms, or the microbial species responsible for their occurrence. In this study, floating sulphur biofilms were generated in a continuous flow baflle reactor and their structure was examined using scanning electron microscopy. It was found that they occur as layered structures with morphologically distinct bacterial forms present in different layers of the biofilm. The biofilpl structure was also found to be dynamic, with structural changes observed as feed conditions were altered. An enriched culture derived from the biofi1m demonstrated rates of sulphide oxidation comparable to values reported in the literature for liquid culture systems. The microbiology of the biofi1m was studied using traditional plate culture techniques and analysis ofrRNA genes. Identification of plate culture isolates as representatives of the biofi1m community proved to be limited, leading to a PeR-based cloning approach. The majority of the organisms present in the sulphur biofi1m were classified as species in the genus ~eudomonas, and a number of other bacterial species whose sulphide oxidising capacity has been noted previously. Surprisingly, only 2% of the clone library consisted of Thiobacillus spp., and no sulphate reducing bacteria were identified in the biofilm at all. These results indicate that in organic sulphide-rich environments facultative chemolithoheterotrophic bacterial forms predominate in floating sulphur biofilms, and that the complete biological cycling of sulphur may not occur in these systems.
- Full Text:
- Date Issued: 2000
- Authors: Gilfillan, Joanne Criseyde
- Date: 2000
- Subjects: Biofilms , Sulfides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3903 , http://hdl.handle.net/10962/d1003962 , Biofilms , Sulfides
- Description: Floating sulphur biofilms are observed as surface layers in numerous aquatic sulphide-rich environments, and apparently play an important role in the cycling of sulphur in its various oxidation states. In addition to the conversion of sulphide to sulphur and/or sulphate species, it has been suspected that subsequent reduction back to sulphide may occur within the floating sulphur biofi1m in organic-rich environments. The use of sulphur biofilms for the harvesting of elemental sulphur from wastewater treatment systems has also been suggested. There is, however, little documented information in the literature on the structure of floating sulphur biofilms, or the microbial species responsible for their occurrence. In this study, floating sulphur biofilms were generated in a continuous flow baflle reactor and their structure was examined using scanning electron microscopy. It was found that they occur as layered structures with morphologically distinct bacterial forms present in different layers of the biofilm. The biofilpl structure was also found to be dynamic, with structural changes observed as feed conditions were altered. An enriched culture derived from the biofi1m demonstrated rates of sulphide oxidation comparable to values reported in the literature for liquid culture systems. The microbiology of the biofi1m was studied using traditional plate culture techniques and analysis ofrRNA genes. Identification of plate culture isolates as representatives of the biofi1m community proved to be limited, leading to a PeR-based cloning approach. The majority of the organisms present in the sulphur biofi1m were classified as species in the genus ~eudomonas, and a number of other bacterial species whose sulphide oxidising capacity has been noted previously. Surprisingly, only 2% of the clone library consisted of Thiobacillus spp., and no sulphate reducing bacteria were identified in the biofilm at all. These results indicate that in organic sulphide-rich environments facultative chemolithoheterotrophic bacterial forms predominate in floating sulphur biofilms, and that the complete biological cycling of sulphur may not occur in these systems.
- Full Text:
- Date Issued: 2000
An investigation into tools and protocols for commercial audio web-site creation
- Authors: Ndinga, S'busiso Simon
- Date: 2000
- Subjects: Web sites -- Design , Digital libraries , Internet -- Security measures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4621 , http://hdl.handle.net/10962/d1006488 , Web sites -- Design , Digital libraries , Internet -- Security measures
- Description: This thesis presents a feasibility study of a Web-based digital music library and purchasing system. It investigates the current status of the enabling technologies for developing such a system. An analysis of various Internet audio codecs, streaming audio protocols, Internet credit card payment security methods, and ways for accessing remote Web databases is presented. The objective of the analysis is to determine the viability and the economic benefits of using these technologies when developing systems that facilitate music distribution over the Internet. A prototype of a distributed digital music library and purchasing system named WAPS (for Web-based Audio Purchasing System) was developed and implemented in the Java programming language. In this thesis both the physical and the logical component elements of WAPS are explored in depth so as to provide an insight into the inherent problems of creating such a system, as well as the overriding benefits derived from the creation of such a system.
- Full Text:
- Date Issued: 2000
- Authors: Ndinga, S'busiso Simon
- Date: 2000
- Subjects: Web sites -- Design , Digital libraries , Internet -- Security measures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4621 , http://hdl.handle.net/10962/d1006488 , Web sites -- Design , Digital libraries , Internet -- Security measures
- Description: This thesis presents a feasibility study of a Web-based digital music library and purchasing system. It investigates the current status of the enabling technologies for developing such a system. An analysis of various Internet audio codecs, streaming audio protocols, Internet credit card payment security methods, and ways for accessing remote Web databases is presented. The objective of the analysis is to determine the viability and the economic benefits of using these technologies when developing systems that facilitate music distribution over the Internet. A prototype of a distributed digital music library and purchasing system named WAPS (for Web-based Audio Purchasing System) was developed and implemented in the Java programming language. In this thesis both the physical and the logical component elements of WAPS are explored in depth so as to provide an insight into the inherent problems of creating such a system, as well as the overriding benefits derived from the creation of such a system.
- Full Text:
- Date Issued: 2000
An appraisal of the production and utility of digital atlases in Africa: a case study of Swaziland
- Authors: Pettit, Louise Manda
- Date: 2000
- Subjects: Swaziland Atlases , Digital mapping , Geographic information systems , Cartography -- Data processing , Cartography -- Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4816 , http://hdl.handle.net/10962/d1005490 , Swaziland Atlases , Digital mapping , Geographic information systems , Cartography -- Data processing , Cartography -- Africa
- Description: This research will appraise the production and utility of digital atlases in an African context, using personal experience gained through the production of a digital atlas for Swaziland, the opinions obtained from other producers of African digital atlases and relevant literature. Since the 1950s, decision makers and researchers have viewed information as a powerful contributor to national development. Over the past thirty years, developed countries have increased the efficient collation and dissemination of geographic information through the utilization of the digital environment. The development of Geographic Information Systems (GIS) has increased the range of applications attainable in digital mapping projects. Applications have ranged from resource inventories to the monitoring of environmental degradation, crime patterns and service provision. The patchy history of data collection, analysis and mapping in Africa, has had a limiting effect on the ability of countries to identify, plan and control their resources efficiently. Despite the desire to automate the mapping process and reap some of the planning benefits evident in the developed world, Africa has not succeeded in mobilising full technological potential. Political instability, poor infrastructure, the absence of national policy guidelines, and a lack of skilled manpower are some of the issues which have limited utilization. Despite many of the hurdles faced by African countries, automated mapping and analysis technologies are still being pursued. The role of computers in the utilisation of data has become apparent through several means, one of which is the digital atlas. Analytical functions in many of these products allow situation modelling and provide superior graphic displays in comparison to their paper counterparts. Several African countries have embarked on the development of national digital databases and in some cases have produced digital national atlases. The potential to improve resource utilization, service provision and land use planning using these atlases, does exist. The production and utility of these atlases in an African context, however, needs closer assessment. "Computers don't clothe, don't cure, don't feed. Their power begins and ends with information. Their usefulness is therefore strictly linked to the ffectiveness of the information" (Gardner,1993:16).
- Full Text:
- Date Issued: 2000
- Authors: Pettit, Louise Manda
- Date: 2000
- Subjects: Swaziland Atlases , Digital mapping , Geographic information systems , Cartography -- Data processing , Cartography -- Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4816 , http://hdl.handle.net/10962/d1005490 , Swaziland Atlases , Digital mapping , Geographic information systems , Cartography -- Data processing , Cartography -- Africa
- Description: This research will appraise the production and utility of digital atlases in an African context, using personal experience gained through the production of a digital atlas for Swaziland, the opinions obtained from other producers of African digital atlases and relevant literature. Since the 1950s, decision makers and researchers have viewed information as a powerful contributor to national development. Over the past thirty years, developed countries have increased the efficient collation and dissemination of geographic information through the utilization of the digital environment. The development of Geographic Information Systems (GIS) has increased the range of applications attainable in digital mapping projects. Applications have ranged from resource inventories to the monitoring of environmental degradation, crime patterns and service provision. The patchy history of data collection, analysis and mapping in Africa, has had a limiting effect on the ability of countries to identify, plan and control their resources efficiently. Despite the desire to automate the mapping process and reap some of the planning benefits evident in the developed world, Africa has not succeeded in mobilising full technological potential. Political instability, poor infrastructure, the absence of national policy guidelines, and a lack of skilled manpower are some of the issues which have limited utilization. Despite many of the hurdles faced by African countries, automated mapping and analysis technologies are still being pursued. The role of computers in the utilisation of data has become apparent through several means, one of which is the digital atlas. Analytical functions in many of these products allow situation modelling and provide superior graphic displays in comparison to their paper counterparts. Several African countries have embarked on the development of national digital databases and in some cases have produced digital national atlases. The potential to improve resource utilization, service provision and land use planning using these atlases, does exist. The production and utility of these atlases in an African context, however, needs closer assessment. "Computers don't clothe, don't cure, don't feed. Their power begins and ends with information. Their usefulness is therefore strictly linked to the ffectiveness of the information" (Gardner,1993:16).
- Full Text:
- Date Issued: 2000