Nonlinear optical properties of metal free thio alkyl and tert-butyl phenoxy phthalocyanine
- Authors: Joseph, Otto
- Date: 2021-10
- Subjects: Nonlinear optics , Phthalocyanines , Time-dependent density functional theory , Magnetic circular dichroism , Reverse saturable absorption (RSA) , Real Time Dependent Density Functional Theory (RT-TDDFT)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190712 , vital:45021
- Description: This work reports on the nonlinear optical properties of tetra - and octa substituted phthalocyanines (Pcs) utilising pentane thiol and 4-tertbutyl phenol as substituents. Their nonlinear absorption coefficient (𝛽) and absorption cross sections were determined using the Z-scan technique with a 10 ns pulse laser at 532 nm. The molecular second order hyperpolarizability Im[γ] was observed and the following Im[γ] trend was obtained for 𝛼-H2Pc(SC5H11)4 isomers, 5.93 ×10−31 (Cs) 2.24×10−32(D2h) > 1.21×10−32(C4h) > 1.05×10−32 (C2v) esu, respectively, in chloroform. Symmetry was seen to have an effect on the observed reverse saturable absorption (RSA) response. Based on the five level model rate equation nonlinear fit of the RSA response curves and Real Time Time Dependant Density Functional Theory (RT-TDDFT) results, the singlet excited state population dynamics was found to play a significant role in producing the observed Im[γ] trend. , Thesis (MSc) -- Faculty of Science, Chemistry, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Joseph, Otto
- Date: 2021-10
- Subjects: Nonlinear optics , Phthalocyanines , Time-dependent density functional theory , Magnetic circular dichroism , Reverse saturable absorption (RSA) , Real Time Dependent Density Functional Theory (RT-TDDFT)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190712 , vital:45021
- Description: This work reports on the nonlinear optical properties of tetra - and octa substituted phthalocyanines (Pcs) utilising pentane thiol and 4-tertbutyl phenol as substituents. Their nonlinear absorption coefficient (𝛽) and absorption cross sections were determined using the Z-scan technique with a 10 ns pulse laser at 532 nm. The molecular second order hyperpolarizability Im[γ] was observed and the following Im[γ] trend was obtained for 𝛼-H2Pc(SC5H11)4 isomers, 5.93 ×10−31 (Cs) 2.24×10−32(D2h) > 1.21×10−32(C4h) > 1.05×10−32 (C2v) esu, respectively, in chloroform. Symmetry was seen to have an effect on the observed reverse saturable absorption (RSA) response. Based on the five level model rate equation nonlinear fit of the RSA response curves and Real Time Time Dependant Density Functional Theory (RT-TDDFT) results, the singlet excited state population dynamics was found to play a significant role in producing the observed Im[γ] trend. , Thesis (MSc) -- Faculty of Science, Chemistry, 2021
- Full Text:
- Date Issued: 2021-10
Ecological infrastructure importance for drought mitigation in rural South African catchments: the Cacadu Catchment case example
- Authors: Xoxo, Beauten Sinetemba
- Date: 2021-10
- Subjects: Sustainable Development Goals , Water security South Africa , Remote sensing , Watershed restoration South Africa , Restoration ecology South Africa , Ecosystem services South Africa , SDG 15.3.1
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191203 , vital:45070
- Description: Water scarcity is recognised as one of the significant challenges facing many countries, including South Africa. The threat of water scarcity is exacerbated by the coupled impacts of climate and anthropogenic drivers. Ongoing droughts and continued land cover change and degradation influence the ability of catchments to partition rainwater runoff, thereby affecting streamflow returns. However, quantifying land degradation accurately remains a challenge. This thesis used the theoretical lens of investing in ecological infrastructure to improve the drought mitigation function in rural catchments. This theoretical framework allows for a social-ecological systems approach to understand and facilitate science-based strategies for promoting ecosystem recovery. Specifically, this study aimed to explore the role and benefit of ecological infrastructure for improving drought mitigation, and consequently, water security for rural communities. Thus, this study sought to assess the consequences of human actions to catchment health status using the 15th Sustainable Development Goal indicator for the proportion of degraded land over the total land area as a surrogate. Secondly, hydrological modelling was used to describe how different land covers influence catchment hydrology, which related to how ecological infrastructure enables drought risk-reduction for mitigation regulation. Finally, this study developed a spatial prioritisation plan for restoration to improve drought mitigation for four focal ecological infrastructure (EI) categories (i.e. wetlands, riparian margins, abandoned agricultural fields and grasslands). The focal EI categories were selected for their importance in delivering water-related ecosystem services when sustainably managed. Chapter 1 sets the scene (i.e. provides the study background) and Chapter 2 provides a review of the literature. In Chapter 3, the recently released global GIS toolbox (TRENDS.EARTH) was used for tracking land change and for assessing the SDG 15.3.1 degradation indicator of i.e. Cacadu catchment over 15 years at a 300 m resolution. The results showed a declining trend in biomass productivity within the Cacadu catchment led to moderate degradation, with 16.79% of the total landscape degraded, which was determined by the pugin using the one-out, all-out rule. The incidence of degradation was detected in middle reaches of the catchment (i.e. S10F-J), while some improvement was detected in upper reaches (S10A-C) and lower reaches (S10J). In Chapter 4, a GIS-based Analytic Hierarchical Process (AHP) based on community stakeholder priorities, open-access spatial datasets and expert opinions, was used to identify EI focal areas that are best suitable for restoration to increase the drought mitigation capacity of the Cacadu catchment. The collected datasets provided three broad criteria (ecosystem health, water provision and social benefit) for establishing the AHP model using 12 spatial attributes. Prioritisation results show that up to 89% of the Cacadu catchment is suitable for restoration to improve drought mitigation. Catchments S10B-D, and S10F, S10G and S10J were highly prioritised while S10A, S10E and S10H received low priority, due to improving environmental conditions and low hydrological potential. Areas that were prioritised with consideration for local livelihoods overlap the areas for drought mitigation and form a network of villages from the middle to lower catchment reaches. Prioritised restoration areas with a consideration of societal benefit made up 0.56% of wetlands, 4.27% of riparian margins, 92.06% of abandoned croplands, and 51.86% of grasslands. Chapter 5 reports on use of the Pitman groundwater model to help understand the influence of land modification on catchment hydrology, and highlight the role of restoration interventions. The Cacadu catchment is ungauged, therefore the neighbouring Indwe catchment was used for parameter transfer through a spatial regionalisation technique. Results suggest that degradation increases surface runoff and aggravates recharge reduction, thereby reducing streamflow during low flow periods. In areas where there is natural land cover recovery, the Pitman Model simulated similar dry season streamflow to the natural land cover. Combining the outcomes from the three assessments allowed the study to highlight the role and benefits of ecological infrastructure in terms of drought mitigation. Study findings were interpreted to make recommendations for the role and benefit of ecological infrastructure for drought mitigation at a landscape scale and tertiary catchment level, within the context of available management options. The results support the notion that multiple science data sources can promote investments in ecological infrastructure. However, better spatial and temporal resolution datasets at a national level are still needed to improve the accuracy of studies such as the one outlined in this thesis. The study recommends adopting better ecosystem protection approaches and collaborative governance at multiple levels to reduce the vulnerability of rural communities to drought impacts. , Thesis (MSc) -- Faculty of Science, Institute for Water Research, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Xoxo, Beauten Sinetemba
- Date: 2021-10
- Subjects: Sustainable Development Goals , Water security South Africa , Remote sensing , Watershed restoration South Africa , Restoration ecology South Africa , Ecosystem services South Africa , SDG 15.3.1
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191203 , vital:45070
- Description: Water scarcity is recognised as one of the significant challenges facing many countries, including South Africa. The threat of water scarcity is exacerbated by the coupled impacts of climate and anthropogenic drivers. Ongoing droughts and continued land cover change and degradation influence the ability of catchments to partition rainwater runoff, thereby affecting streamflow returns. However, quantifying land degradation accurately remains a challenge. This thesis used the theoretical lens of investing in ecological infrastructure to improve the drought mitigation function in rural catchments. This theoretical framework allows for a social-ecological systems approach to understand and facilitate science-based strategies for promoting ecosystem recovery. Specifically, this study aimed to explore the role and benefit of ecological infrastructure for improving drought mitigation, and consequently, water security for rural communities. Thus, this study sought to assess the consequences of human actions to catchment health status using the 15th Sustainable Development Goal indicator for the proportion of degraded land over the total land area as a surrogate. Secondly, hydrological modelling was used to describe how different land covers influence catchment hydrology, which related to how ecological infrastructure enables drought risk-reduction for mitigation regulation. Finally, this study developed a spatial prioritisation plan for restoration to improve drought mitigation for four focal ecological infrastructure (EI) categories (i.e. wetlands, riparian margins, abandoned agricultural fields and grasslands). The focal EI categories were selected for their importance in delivering water-related ecosystem services when sustainably managed. Chapter 1 sets the scene (i.e. provides the study background) and Chapter 2 provides a review of the literature. In Chapter 3, the recently released global GIS toolbox (TRENDS.EARTH) was used for tracking land change and for assessing the SDG 15.3.1 degradation indicator of i.e. Cacadu catchment over 15 years at a 300 m resolution. The results showed a declining trend in biomass productivity within the Cacadu catchment led to moderate degradation, with 16.79% of the total landscape degraded, which was determined by the pugin using the one-out, all-out rule. The incidence of degradation was detected in middle reaches of the catchment (i.e. S10F-J), while some improvement was detected in upper reaches (S10A-C) and lower reaches (S10J). In Chapter 4, a GIS-based Analytic Hierarchical Process (AHP) based on community stakeholder priorities, open-access spatial datasets and expert opinions, was used to identify EI focal areas that are best suitable for restoration to increase the drought mitigation capacity of the Cacadu catchment. The collected datasets provided three broad criteria (ecosystem health, water provision and social benefit) for establishing the AHP model using 12 spatial attributes. Prioritisation results show that up to 89% of the Cacadu catchment is suitable for restoration to improve drought mitigation. Catchments S10B-D, and S10F, S10G and S10J were highly prioritised while S10A, S10E and S10H received low priority, due to improving environmental conditions and low hydrological potential. Areas that were prioritised with consideration for local livelihoods overlap the areas for drought mitigation and form a network of villages from the middle to lower catchment reaches. Prioritised restoration areas with a consideration of societal benefit made up 0.56% of wetlands, 4.27% of riparian margins, 92.06% of abandoned croplands, and 51.86% of grasslands. Chapter 5 reports on use of the Pitman groundwater model to help understand the influence of land modification on catchment hydrology, and highlight the role of restoration interventions. The Cacadu catchment is ungauged, therefore the neighbouring Indwe catchment was used for parameter transfer through a spatial regionalisation technique. Results suggest that degradation increases surface runoff and aggravates recharge reduction, thereby reducing streamflow during low flow periods. In areas where there is natural land cover recovery, the Pitman Model simulated similar dry season streamflow to the natural land cover. Combining the outcomes from the three assessments allowed the study to highlight the role and benefits of ecological infrastructure in terms of drought mitigation. Study findings were interpreted to make recommendations for the role and benefit of ecological infrastructure for drought mitigation at a landscape scale and tertiary catchment level, within the context of available management options. The results support the notion that multiple science data sources can promote investments in ecological infrastructure. However, better spatial and temporal resolution datasets at a national level are still needed to improve the accuracy of studies such as the one outlined in this thesis. The study recommends adopting better ecosystem protection approaches and collaborative governance at multiple levels to reduce the vulnerability of rural communities to drought impacts. , Thesis (MSc) -- Faculty of Science, Institute for Water Research, 2021
- Full Text:
- Date Issued: 2021-10
Self-inquiry: Comparing Plato and Patanjali
- Authors: Coughlan, Daniel Michael
- Date: 2021-10
- Subjects: Plato , Patañjali , Self , Identity (Philosophical concept) , Comparison (Philosophy) , Justification (Theory of knowledge)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190066 , vital:44960
- Description: At its most effective my research hopes to re-affirm the central value and importance of self-inquiry. That is, I hope to echo the familiar call of the wise to know thyself. Of the many mouths and temple walls that have lent authority to this precept there is perhaps no mouth more important than one’s own. To know thyself is the task and responsibility of the individual. In order to arrive at the point where I can re-affirm its value I explore the nature of self-inquiry with the help of Plato, Patanjali and a comparison between them. I propose two general senses in which we might understand self-inquiry and seek to bring out the core problems faced by each. We find an account of these two senses and the relationship between them in both Plato and Patanjali, so too, though less obviously, in the comparison between them. The comparison provides the opportunity for reflecting on the ground that it moves from and depends on, the common ground we assume between the two compared philosophers/ies. I contend that this ground is ultimately the comparer, one’s self. The consequence is that the comparative project and the project of self-inquiry both meet and are mutually beneficial. The three together; Plato, Patanjali, and the comparison between them help us account for nature of self-inquiry in helping us to better understand the relationship between the two senses in which we can come to understand and think about it. In the first sense, self-inquiry is cast as the examination of one’s life. In the second sense, we are invited to consider the possibility of an unmediated knowing of the examiner, an unmediated self-knowing. With a better understanding of what self-inquiry is I stand to conclude by re-affirming its value. , Thesis (MPhil) -- Faculty of Humanities, Philosophy, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Coughlan, Daniel Michael
- Date: 2021-10
- Subjects: Plato , Patañjali , Self , Identity (Philosophical concept) , Comparison (Philosophy) , Justification (Theory of knowledge)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190066 , vital:44960
- Description: At its most effective my research hopes to re-affirm the central value and importance of self-inquiry. That is, I hope to echo the familiar call of the wise to know thyself. Of the many mouths and temple walls that have lent authority to this precept there is perhaps no mouth more important than one’s own. To know thyself is the task and responsibility of the individual. In order to arrive at the point where I can re-affirm its value I explore the nature of self-inquiry with the help of Plato, Patanjali and a comparison between them. I propose two general senses in which we might understand self-inquiry and seek to bring out the core problems faced by each. We find an account of these two senses and the relationship between them in both Plato and Patanjali, so too, though less obviously, in the comparison between them. The comparison provides the opportunity for reflecting on the ground that it moves from and depends on, the common ground we assume between the two compared philosophers/ies. I contend that this ground is ultimately the comparer, one’s self. The consequence is that the comparative project and the project of self-inquiry both meet and are mutually beneficial. The three together; Plato, Patanjali, and the comparison between them help us account for nature of self-inquiry in helping us to better understand the relationship between the two senses in which we can come to understand and think about it. In the first sense, self-inquiry is cast as the examination of one’s life. In the second sense, we are invited to consider the possibility of an unmediated knowing of the examiner, an unmediated self-knowing. With a better understanding of what self-inquiry is I stand to conclude by re-affirming its value. , Thesis (MPhil) -- Faculty of Humanities, Philosophy, 2021
- Full Text:
- Date Issued: 2021-10
An evolutionary study of legless skinks’ (Acontias Cuvier, 1817) head and vertebrae morphology
- Authors: Evlambiou, Anthony Andreas
- Date: 2021-10
- Subjects: Skinks South Africa , Acontias South Africa , Typhlosaurus South Africa , Acontias Morphology , Acontias Phylogeny , Acontias Evolution , Vertebrae , Skull Growth , Evolutionary developmental biology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190690 , vital:45018
- Description: Environmental factors and/or processes can produce differences in general shape between individuals or particular parts of individuals. Examples of these biological processes may include ontogenetic development, adaptation to local geographic factors, or long-term evolutionary diversification. An organism is not likely to be able to optimise a single structure for multiple purposes and so trade-offs are likely to occur. An example of such a structure is the cranium, as it can be used for multiple activities such as defensive and sexual behaviour, locomotion, prey capture, and ingestion. Morphological characteristics have historically been used in the description of species. Genetic analyses have gained popularity as species delineation techniques and have been particularly useful in identifying cryptic species, especially among morphological conserved species like legless skinks of the subfamily Acontinae (e.g. Acontias Cuvier, 1817 and Typhlosaurus Weigmann, 1834). However, completely doing away with morphological techniques during species descriptions is not the best option. Therefore, novel methods to identify species, especially those with similar body plans, are needed. In this dissertation, we explore the links between head shape and vertebral number to environmental pressures to determine whether the evolutionary process is driven by environmental pressures (soil or biome) or is retained through ancestry. A novel species/clade delineation linked to vertebral number is also investigated. Head shape was expected to have a close link to the environment and the number of vertebrae was expected to have a closer link to ancestry. The first chapter investigates the drivers behind Acontias head shape evolution using geometric morphometric techniques. We found that environmental pressures did affect the evolution of head shape especially in the “soil” and “biome” categories but further investigation is advised. The second chapter explores the viability of using vertebral counts as a novel method for species and/or clade delineation in Acontias and to determine whether vertebral number can be linked to the environment. Delineating species based on vertebral count is likely not an option, however, delineating clades proved to show promising results. A link between vertebral count and environment was found in Acontias with larger bodied species occurring in different environments to smaller body species. In conclusion, the genus Acontias is difficult to delineate morphologically. Genetic sequence analyses can indicate differences and delineate the species. Even though there were differences in morphology based on environmental factors, it is not sufficient to delineate this subfamily alone. Further research is advised and this dissertation provides a good basis to work with. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Evlambiou, Anthony Andreas
- Date: 2021-10
- Subjects: Skinks South Africa , Acontias South Africa , Typhlosaurus South Africa , Acontias Morphology , Acontias Phylogeny , Acontias Evolution , Vertebrae , Skull Growth , Evolutionary developmental biology
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190690 , vital:45018
- Description: Environmental factors and/or processes can produce differences in general shape between individuals or particular parts of individuals. Examples of these biological processes may include ontogenetic development, adaptation to local geographic factors, or long-term evolutionary diversification. An organism is not likely to be able to optimise a single structure for multiple purposes and so trade-offs are likely to occur. An example of such a structure is the cranium, as it can be used for multiple activities such as defensive and sexual behaviour, locomotion, prey capture, and ingestion. Morphological characteristics have historically been used in the description of species. Genetic analyses have gained popularity as species delineation techniques and have been particularly useful in identifying cryptic species, especially among morphological conserved species like legless skinks of the subfamily Acontinae (e.g. Acontias Cuvier, 1817 and Typhlosaurus Weigmann, 1834). However, completely doing away with morphological techniques during species descriptions is not the best option. Therefore, novel methods to identify species, especially those with similar body plans, are needed. In this dissertation, we explore the links between head shape and vertebral number to environmental pressures to determine whether the evolutionary process is driven by environmental pressures (soil or biome) or is retained through ancestry. A novel species/clade delineation linked to vertebral number is also investigated. Head shape was expected to have a close link to the environment and the number of vertebrae was expected to have a closer link to ancestry. The first chapter investigates the drivers behind Acontias head shape evolution using geometric morphometric techniques. We found that environmental pressures did affect the evolution of head shape especially in the “soil” and “biome” categories but further investigation is advised. The second chapter explores the viability of using vertebral counts as a novel method for species and/or clade delineation in Acontias and to determine whether vertebral number can be linked to the environment. Delineating species based on vertebral count is likely not an option, however, delineating clades proved to show promising results. A link between vertebral count and environment was found in Acontias with larger bodied species occurring in different environments to smaller body species. In conclusion, the genus Acontias is difficult to delineate morphologically. Genetic sequence analyses can indicate differences and delineate the species. Even though there were differences in morphology based on environmental factors, it is not sufficient to delineate this subfamily alone. Further research is advised and this dissertation provides a good basis to work with. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-10
Modification of Gelatin-Methacrylate, Hyaluronic-Methacrylate and Poly(ethylene) glycol Diacrylate hydrogel bioinks towards the additive manufacturing of articular cartilage
- Authors: Barwick, Matthew William
- Date: 2021-10
- Subjects: Cartilage Diseases , Cartilage Regeneration , Articular cartilage Diseases , Chondrogenesis , Stem cells , Scanning electron microscopy , Fourier transform infrared spectroscopy , Three-dimensional printing , Gelatin-Methacrylate , Hyaluronic-Methacrylate , Poly(ethylene) glycolDiacrylate , Hydrogel bioinks , Real-Time Quantitative Cell Analysis (RTCA) , Bioprinting
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191181 , vital:45068
- Description: Cartilage degradation is most commonly associated with Rheumatoid arthritis and Osteoarthritis, affecting millions of people worldwide. Joint transplants commonly use titanium alloys, which have a shelf life of between 10-15 years. Although the titanium transplant restores partial mobility, side effects such as inflammation, swelling, faulty implants, and metal poisoning in some cases resulting from the transplant. The use of additive manufacturing of articular cartilage sheds new, innovative prospects for joint replacements. This study sets out to formulate and characterize five different hydrogel types towards the additive manufacturing of articular cartilage. Chondrogenic and Adipogenic differentiation was carried out on two separate adipose-mesenchymal stem cell lines A270620-01A, and A311019-02T and validation and efficiency of the differentiation and chondrogenic gene expression was carried out using Alcian Blue stain, Oil Red O stain and Quantitative Reverse Transcription PCR (RT-qPCR). Hydrogel formulation and characterisation of 10 % Gelatin-methacryloyl (GelMA), 10 % Poly (ethylene) glycol diacrylate (PEGDA), 5 % GelMA/5 % PEGDA, 10 % GelMA/0.5 % Hyaluronic Acid Methacrylate (HAMA) and 10 % PEGDA/0.5 % HAMA was carried out through swelling and degradation ratios, surface area and porosity characterisation using Scanning Electron Microscopy (SEM). Hydrogel component and spectroscopic analysis were carried using Real-Time Quantitative Cell Analysis (RTCA) and Fourier-transform Infrared Spectroscopy (FTIR) analysis for each formulated hydrogel's chemical characterisation. Three-dimensional printing (3D) of 10 % PEGDA/0.5 % HAMA and 5 % GelMA/5 % PEGDA was performed using the Zortrax INKSPIRE Resin Ultra-Violet (UV) LCD Desktop 3D Printer. Hydrogel sterility and cell viability were carried out for each hydrogel type using fluorescence microscopy. Both A270620-01A and A311019-02T cell lines showed adipogenic and chondrogenic differentiation ability, with A311019-02T cell line showing greater chondrogenic differentiation of Alcian blue staining. The A270620-01A cell line resulted in a greater collagen gene expression based on the RT-qPCR results. The hydrogel 10 % GelMA showed the greatest swelling ratio of 1260 % in DPBS and 1192 % in DMEM. A significant difference between hydrogel swelling and swelling with Dulbecco's Phosphate Buffered Saline (DPBS) and Dulbecco’s Modified Eagle Medium (DMEM) was observed. The 10 % PEGDA hydrogel had the greatest degradation ratio of 59 % mass remaining, where the 10 % GelMA/0.5 % HAMA showed the least amount of degradation with a mass remaining at 91 %. The 10 % GelMA showed the greatest porosity will the largest pore size of 14 μm in diameter. Hydrogel component and spectroscopic analysis showed no cytotoxic effects for the visible light photoinitiator used to polymerize the hydrogel and no cytotoxic effects for the concentrations used in chondrogenic differentiation. The FTIR analysis showed partial gelatin and hyaluronic acid modification with methacrylic anhydride; however, the distinction between the hybrid hydrogels and single polymer hydrogels could not be made effectively. UV and ethanol washing showed to completely sterilise the hydrogel disks from any contaminants, making them suitable for tissue culture. The cell viability analysis showed the 10 % GelMA/HAMA having the highest cell viability of 77.3 % using 5000 cells/disk and 89.64 % viability using 50 000 cells/disk over a 7-day incubation period. Overall, the combination of two polymers, GelMA and HAMA, has good potential as a 3D hydrogel scaffold towards additive manufacturing of articular cartilage. , Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Barwick, Matthew William
- Date: 2021-10
- Subjects: Cartilage Diseases , Cartilage Regeneration , Articular cartilage Diseases , Chondrogenesis , Stem cells , Scanning electron microscopy , Fourier transform infrared spectroscopy , Three-dimensional printing , Gelatin-Methacrylate , Hyaluronic-Methacrylate , Poly(ethylene) glycolDiacrylate , Hydrogel bioinks , Real-Time Quantitative Cell Analysis (RTCA) , Bioprinting
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191181 , vital:45068
- Description: Cartilage degradation is most commonly associated with Rheumatoid arthritis and Osteoarthritis, affecting millions of people worldwide. Joint transplants commonly use titanium alloys, which have a shelf life of between 10-15 years. Although the titanium transplant restores partial mobility, side effects such as inflammation, swelling, faulty implants, and metal poisoning in some cases resulting from the transplant. The use of additive manufacturing of articular cartilage sheds new, innovative prospects for joint replacements. This study sets out to formulate and characterize five different hydrogel types towards the additive manufacturing of articular cartilage. Chondrogenic and Adipogenic differentiation was carried out on two separate adipose-mesenchymal stem cell lines A270620-01A, and A311019-02T and validation and efficiency of the differentiation and chondrogenic gene expression was carried out using Alcian Blue stain, Oil Red O stain and Quantitative Reverse Transcription PCR (RT-qPCR). Hydrogel formulation and characterisation of 10 % Gelatin-methacryloyl (GelMA), 10 % Poly (ethylene) glycol diacrylate (PEGDA), 5 % GelMA/5 % PEGDA, 10 % GelMA/0.5 % Hyaluronic Acid Methacrylate (HAMA) and 10 % PEGDA/0.5 % HAMA was carried out through swelling and degradation ratios, surface area and porosity characterisation using Scanning Electron Microscopy (SEM). Hydrogel component and spectroscopic analysis were carried using Real-Time Quantitative Cell Analysis (RTCA) and Fourier-transform Infrared Spectroscopy (FTIR) analysis for each formulated hydrogel's chemical characterisation. Three-dimensional printing (3D) of 10 % PEGDA/0.5 % HAMA and 5 % GelMA/5 % PEGDA was performed using the Zortrax INKSPIRE Resin Ultra-Violet (UV) LCD Desktop 3D Printer. Hydrogel sterility and cell viability were carried out for each hydrogel type using fluorescence microscopy. Both A270620-01A and A311019-02T cell lines showed adipogenic and chondrogenic differentiation ability, with A311019-02T cell line showing greater chondrogenic differentiation of Alcian blue staining. The A270620-01A cell line resulted in a greater collagen gene expression based on the RT-qPCR results. The hydrogel 10 % GelMA showed the greatest swelling ratio of 1260 % in DPBS and 1192 % in DMEM. A significant difference between hydrogel swelling and swelling with Dulbecco's Phosphate Buffered Saline (DPBS) and Dulbecco’s Modified Eagle Medium (DMEM) was observed. The 10 % PEGDA hydrogel had the greatest degradation ratio of 59 % mass remaining, where the 10 % GelMA/0.5 % HAMA showed the least amount of degradation with a mass remaining at 91 %. The 10 % GelMA showed the greatest porosity will the largest pore size of 14 μm in diameter. Hydrogel component and spectroscopic analysis showed no cytotoxic effects for the visible light photoinitiator used to polymerize the hydrogel and no cytotoxic effects for the concentrations used in chondrogenic differentiation. The FTIR analysis showed partial gelatin and hyaluronic acid modification with methacrylic anhydride; however, the distinction between the hybrid hydrogels and single polymer hydrogels could not be made effectively. UV and ethanol washing showed to completely sterilise the hydrogel disks from any contaminants, making them suitable for tissue culture. The cell viability analysis showed the 10 % GelMA/HAMA having the highest cell viability of 77.3 % using 5000 cells/disk and 89.64 % viability using 50 000 cells/disk over a 7-day incubation period. Overall, the combination of two polymers, GelMA and HAMA, has good potential as a 3D hydrogel scaffold towards additive manufacturing of articular cartilage. , Thesis (MSc) -- Faculty of Science, Biotechnology Innovation Centre, 2021
- Full Text:
- Date Issued: 2021-10
The tuber-feeding weevil Listronotus frontalis as a candidate biological control agent for the invasive semi-aquatic plant Sagittaria platyphylla within South Africa
- Authors: Rogers, Daniel James
- Date: 2021-10
- Subjects: Listronotus South Africa , Arrowhead (Plants) South Africa , Arrowhead (Plants) Biological control South Africa , Invasive plants Biological control South Africa , Insects as biological pest control agents South Africa , Plant populations South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190731 , vital:45023
- Description: Sagittaria platyphylla (Engelm.) J.G.Sm. (Alismataceae) is an invasive, aquatic macrophyte originating in the southern United States of America. In South Africa, the plant was first detected in Krantzkloof Nature Reserve, KwaZulu-Natal Province in 2008, and due to its known impact in other countries, it was listed as a Category 1a invader species under the National Environmental Management: Biodiversity Act 2004 (NEM:BA). This invasive plant has proved difficult to manage due to its varied growth forms and reproductive strategies, such as prolific seed and below ground tuber production. Due to the limitations of conventional control mechanisms, biological control is currently being considered as a potential control option. The tuber feeding weevil Listronotus frontalis LeConte (Coleoptera: Curculionidae) has been identified as a candidate biological control agent for this invasive species. The aims of this study were twofold; to firstly determine the importance of tubers to S. platyphylla populations growing in South Africa; and secondly, to determine the biology and suitability of L. frontalis, a tuber feeder, as a candidate biological control agent. Surveys of S. platyphylla populations in South Africa showed that tubers were found in all sampled sites, except for Krantzkloof Nature reserve in KwaZulu-Natal Province. The highest number of tubers was 97.75 ± 10.62 (SE) m-2 recorded at Jonkershoek in the Western Cape Province. Monthly sampling from two sites in the Eastern Cape Province, the Makana Botanical Gardens and Maden Dam showed that neither season nor water depth affected tuber production. However, the mean number of tubers as well as mass of tubers sampled, were consistently higher (F(1,179) = 20.9542, P < 0.0001) and heavier (F(1, 857) = 585.7293, P < 0.0001) at the Botanical Gardens than at Maden Dam, respectively. The study showed that tubers are an important life stage of S. platyphylla populations and may vary in size and abundance between and within sites. The tuber feeding weevil was shown to develop from egg to ovipositing adult within just over 40 days. Females were recorded to lay up to 48 eggs within a period of one week. Impact studies showed that adult feeding led to a reduction in all but one of the 11 measured plant growth and developmental measurements, including a reduction in the mean mass of the above-ground plant material (F(2,2743) = 12.05, P = 0.002) as well as a reduction in size and abundance of tubers (F(2,58.47) = 9.756, P = 0.0006) and stolons(F(14.943) = 8.7577, P = 0.003). These results are encouraging and suggest that if the insect is released in South Africa, it may prove to be a valuable biocontrol agent. It is concluded that, until suitable biological control options become available in South Africa, the chemical and mechanical control measures currently implemented should continue, however, controlling tubers should be considered during the planning and implementation of these strategies. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Rogers, Daniel James
- Date: 2021-10
- Subjects: Listronotus South Africa , Arrowhead (Plants) South Africa , Arrowhead (Plants) Biological control South Africa , Invasive plants Biological control South Africa , Insects as biological pest control agents South Africa , Plant populations South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190731 , vital:45023
- Description: Sagittaria platyphylla (Engelm.) J.G.Sm. (Alismataceae) is an invasive, aquatic macrophyte originating in the southern United States of America. In South Africa, the plant was first detected in Krantzkloof Nature Reserve, KwaZulu-Natal Province in 2008, and due to its known impact in other countries, it was listed as a Category 1a invader species under the National Environmental Management: Biodiversity Act 2004 (NEM:BA). This invasive plant has proved difficult to manage due to its varied growth forms and reproductive strategies, such as prolific seed and below ground tuber production. Due to the limitations of conventional control mechanisms, biological control is currently being considered as a potential control option. The tuber feeding weevil Listronotus frontalis LeConte (Coleoptera: Curculionidae) has been identified as a candidate biological control agent for this invasive species. The aims of this study were twofold; to firstly determine the importance of tubers to S. platyphylla populations growing in South Africa; and secondly, to determine the biology and suitability of L. frontalis, a tuber feeder, as a candidate biological control agent. Surveys of S. platyphylla populations in South Africa showed that tubers were found in all sampled sites, except for Krantzkloof Nature reserve in KwaZulu-Natal Province. The highest number of tubers was 97.75 ± 10.62 (SE) m-2 recorded at Jonkershoek in the Western Cape Province. Monthly sampling from two sites in the Eastern Cape Province, the Makana Botanical Gardens and Maden Dam showed that neither season nor water depth affected tuber production. However, the mean number of tubers as well as mass of tubers sampled, were consistently higher (F(1,179) = 20.9542, P < 0.0001) and heavier (F(1, 857) = 585.7293, P < 0.0001) at the Botanical Gardens than at Maden Dam, respectively. The study showed that tubers are an important life stage of S. platyphylla populations and may vary in size and abundance between and within sites. The tuber feeding weevil was shown to develop from egg to ovipositing adult within just over 40 days. Females were recorded to lay up to 48 eggs within a period of one week. Impact studies showed that adult feeding led to a reduction in all but one of the 11 measured plant growth and developmental measurements, including a reduction in the mean mass of the above-ground plant material (F(2,2743) = 12.05, P = 0.002) as well as a reduction in size and abundance of tubers (F(2,58.47) = 9.756, P = 0.0006) and stolons(F(14.943) = 8.7577, P = 0.003). These results are encouraging and suggest that if the insect is released in South Africa, it may prove to be a valuable biocontrol agent. It is concluded that, until suitable biological control options become available in South Africa, the chemical and mechanical control measures currently implemented should continue, however, controlling tubers should be considered during the planning and implementation of these strategies. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-10
Green Synthesis of HIV-1 Protease Inhibitors
- Authors: Hartley, Shaun Neil
- Date: 2021-10
- Subjects: Uncatalogued
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190145 , vital:44967
- Description: Thesis embargoed until October 2022 , Thesis (MSc) -- Faculty of Science, Chemistry, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Hartley, Shaun Neil
- Date: 2021-10
- Subjects: Uncatalogued
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/190145 , vital:44967
- Description: Thesis embargoed until October 2022 , Thesis (MSc) -- Faculty of Science, Chemistry, 2021
- Full Text:
- Date Issued: 2021-10
Evaluation of Megabruchidius tonkineus (Coleoptera: Chrysomelidae: Bruchinae), a candidate biological control agent for Gleditsia triacanthos L. (Fabaceae) in South Africa
- Salgado Astudillo, Sara Elizabeth
- Authors: Salgado Astudillo, Sara Elizabeth
- Date: 2021-10
- Subjects: Honey locust South Africa , Honey locust Biological control South Africa , Invasive plants Biological control South Africa , Biogeography South Africa , Biogeography Climatic factors South Africa , Megabruchidius tonkineus South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/188386 , vital:44749
- Description: Gleditsia triacanthos L. (Fabaceae) (honey locust) is a fast-growing, deciduous tree indigenous to the United States of America. Introduced around the world as an ornamental tree, it has become invasive in a number of countries. Where it is invasive, G. triacanthos competes and replaces indigenous species; it creates dense stands along watercourses, posing a significant environmental threat. In South Africa, G. triacanthos is regarded as one of the country’s fastest spreading weeds. Gleditsia triacanthos produces numerous seeds contained in large hanging pods. Once dislodged from the pods, the seeds are dispersed by birds and mammals, including livestock, which eat the pods. It has been suggested that the seeds should be the target for biological control programme. Some invasive alien plant species are characterised by their ability to spread and establish in new ecosystems because they tolerate a wide range of environmental conditions. In order to predict areas of likely invasion, species distribution models (SDMs) are used to identify areas climatically suitable for their invasion, so enabling better targeted control of the plant species. Gleditsia triacanthos adapts to a wide range of climates and soil types, and tolerates salinity, drought and frost. Currently primarily restricted to the Grassland Biome of South Africa, G. triacanthos has doubled its distribution area in the past 15 years, and it is not known how far the species will spread. In this study we used two different modelling programmes, CLIMEX and MaxEnt, to predict areas where G. triacanthos could find favourable growing conditions; both SDMs showed that most of the country is suitable for G. triacanthos and that it will probably continue to spread, if left unmanaged, into new bioregions, such as the Karoo. In South Africa, the Asian seed-feeding bruchid, Megabruchidius tonkineus (Pic, 1914) (Coleoptera: Chrysomelidae: Bruchinae) has been recorded in the plant’s seed pods and has been considered as a biological control agent. The insect was not released as part of a formal biological control programme and neither host-specificity nor impact studies were conducted on the species prior to its discovery. In 2017 a decision was made to re-consider its status as a Abstract biological control agent until further details of its biology, host specificity, and impact on the seeds of G. triacanthos in South Africa were available. This study shows that Megabruchidius tonkineus has established across the entire G. triacanthos population in South Africa damaging approximately 9% of seeds. Laboratory studies show that, Megabruchidius tonkineus completes its larval development in the seeds of G. triacanthos in about 66.80 ± 0.6880 SE days before eclosing. In addition, the adult females oviposit on the following Fabaceae species: Arachis hypogaea, Albizia, julibrissin, Cicer arietinum, Pisum sativum, Dipogon lignosus, Peltophorum africanum, Podalyria buxifolia Senegalia burkei, Umtiza listerina and Vachellia sieberiana. However, larval development was limited to G. triacanthos. It is concluded that the seed-feeding beetle is not a threat to native Fabaceae species in South Africa, however, it does not damage enough G. triacanthos seeds to be considered a valuable biological control agent at this stage, and additional seed-feeding biological control agents should be considered to reduce the number of G. triacanthos seeds entering the environment. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Salgado Astudillo, Sara Elizabeth
- Date: 2021-10
- Subjects: Honey locust South Africa , Honey locust Biological control South Africa , Invasive plants Biological control South Africa , Biogeography South Africa , Biogeography Climatic factors South Africa , Megabruchidius tonkineus South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/188386 , vital:44749
- Description: Gleditsia triacanthos L. (Fabaceae) (honey locust) is a fast-growing, deciduous tree indigenous to the United States of America. Introduced around the world as an ornamental tree, it has become invasive in a number of countries. Where it is invasive, G. triacanthos competes and replaces indigenous species; it creates dense stands along watercourses, posing a significant environmental threat. In South Africa, G. triacanthos is regarded as one of the country’s fastest spreading weeds. Gleditsia triacanthos produces numerous seeds contained in large hanging pods. Once dislodged from the pods, the seeds are dispersed by birds and mammals, including livestock, which eat the pods. It has been suggested that the seeds should be the target for biological control programme. Some invasive alien plant species are characterised by their ability to spread and establish in new ecosystems because they tolerate a wide range of environmental conditions. In order to predict areas of likely invasion, species distribution models (SDMs) are used to identify areas climatically suitable for their invasion, so enabling better targeted control of the plant species. Gleditsia triacanthos adapts to a wide range of climates and soil types, and tolerates salinity, drought and frost. Currently primarily restricted to the Grassland Biome of South Africa, G. triacanthos has doubled its distribution area in the past 15 years, and it is not known how far the species will spread. In this study we used two different modelling programmes, CLIMEX and MaxEnt, to predict areas where G. triacanthos could find favourable growing conditions; both SDMs showed that most of the country is suitable for G. triacanthos and that it will probably continue to spread, if left unmanaged, into new bioregions, such as the Karoo. In South Africa, the Asian seed-feeding bruchid, Megabruchidius tonkineus (Pic, 1914) (Coleoptera: Chrysomelidae: Bruchinae) has been recorded in the plant’s seed pods and has been considered as a biological control agent. The insect was not released as part of a formal biological control programme and neither host-specificity nor impact studies were conducted on the species prior to its discovery. In 2017 a decision was made to re-consider its status as a Abstract biological control agent until further details of its biology, host specificity, and impact on the seeds of G. triacanthos in South Africa were available. This study shows that Megabruchidius tonkineus has established across the entire G. triacanthos population in South Africa damaging approximately 9% of seeds. Laboratory studies show that, Megabruchidius tonkineus completes its larval development in the seeds of G. triacanthos in about 66.80 ± 0.6880 SE days before eclosing. In addition, the adult females oviposit on the following Fabaceae species: Arachis hypogaea, Albizia, julibrissin, Cicer arietinum, Pisum sativum, Dipogon lignosus, Peltophorum africanum, Podalyria buxifolia Senegalia burkei, Umtiza listerina and Vachellia sieberiana. However, larval development was limited to G. triacanthos. It is concluded that the seed-feeding beetle is not a threat to native Fabaceae species in South Africa, however, it does not damage enough G. triacanthos seeds to be considered a valuable biological control agent at this stage, and additional seed-feeding biological control agents should be considered to reduce the number of G. triacanthos seeds entering the environment. , Thesis (MSc) -- Faculty of Science, Zoology and Entomology, 2021
- Full Text:
- Date Issued: 2021-10
Building the field component of a smart irrigation system: A detailed experience of a computer science graduate
- Authors: Pipile, Yamnkelani Yonela
- Date: 2021-10
- Subjects: Irrigation efficiency Computer-aided design South Africa , Irrigation projects Computer-aided design South Africa , Internet of things , Machine-to-machine communications , Smart water grids South Africa , Raspberry Pi (Computer) , Arduino (Programmable controller) , ZigBee , MQTT (MQ Telemetry Transport) , MQTT-SN , XBee
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191814 , vital:45167
- Description: South Africa is a semi-arid area with an average annual rainfall of approximately 450mm, 60 per cent of which goes towards irrigation. Current irrigation systems generally apply water in a uniform manner across a field, which is both inefficient and can kill the plants. The Internet of Things (IoT), an emerging technology involving the utilization of sensors and actuators to build complex feedback systems, present an opportunity to build a smart irrigation solution. This research project illustrates the development of the field components of a water monitoring system using off the shelf and inexpensive components, exploring at the same time how easy or difficult it would be for a general Computer Science graduate to use hardware components and associated tools within the IoT area. The problem was initially broken down through a classical top-down process, in order to identify the components such as micro-computers, micro- controllers, sensors and network connections, that would be needed to build the solution. I then selected the Raspberry Pi 3, the Arduino Arduino Uno, the MH-Sensor-Series hygrometer, the MQTT messaging protocol, and the ZigBee communication protocol as implemented in the XBee S2C. Once the components were identified, the work followed a bottom-up approach: I studied the components in isolation and relative to each other, through a structured series of experiments, with each experiment addressing a specific component and examining how easy was to use the component. While each experiment allowed the author to acquire and deepen her understanding of each component, and progressively built a more sophisticated prototype, towards the complete solution. I found the vast majority of the identified components and tools to be easy to use, well documented, and most importantly, mature for consumption by our target user, until I encountered the MQTT-SN (MQTT-Sensor Network) implementation, not as mature as the rest. This resulted in us designing and implementing a light-weight, general ZigBee/MQTT gateway, named “yoGa” (Yonella's Gateway) from the author. At the end of the research, I was able to build the field components of a smart irrigation system using the selected tools, including the yoGa gateway, proving practically that a Computer Science graduate from a South African University can become productive in the emerging IoT area. , Thesis (MSc) -- Faculty of Science, Computer Science, 2021
- Full Text:
- Date Issued: 2021-10
- Authors: Pipile, Yamnkelani Yonela
- Date: 2021-10
- Subjects: Irrigation efficiency Computer-aided design South Africa , Irrigation projects Computer-aided design South Africa , Internet of things , Machine-to-machine communications , Smart water grids South Africa , Raspberry Pi (Computer) , Arduino (Programmable controller) , ZigBee , MQTT (MQ Telemetry Transport) , MQTT-SN , XBee
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/191814 , vital:45167
- Description: South Africa is a semi-arid area with an average annual rainfall of approximately 450mm, 60 per cent of which goes towards irrigation. Current irrigation systems generally apply water in a uniform manner across a field, which is both inefficient and can kill the plants. The Internet of Things (IoT), an emerging technology involving the utilization of sensors and actuators to build complex feedback systems, present an opportunity to build a smart irrigation solution. This research project illustrates the development of the field components of a water monitoring system using off the shelf and inexpensive components, exploring at the same time how easy or difficult it would be for a general Computer Science graduate to use hardware components and associated tools within the IoT area. The problem was initially broken down through a classical top-down process, in order to identify the components such as micro-computers, micro- controllers, sensors and network connections, that would be needed to build the solution. I then selected the Raspberry Pi 3, the Arduino Arduino Uno, the MH-Sensor-Series hygrometer, the MQTT messaging protocol, and the ZigBee communication protocol as implemented in the XBee S2C. Once the components were identified, the work followed a bottom-up approach: I studied the components in isolation and relative to each other, through a structured series of experiments, with each experiment addressing a specific component and examining how easy was to use the component. While each experiment allowed the author to acquire and deepen her understanding of each component, and progressively built a more sophisticated prototype, towards the complete solution. I found the vast majority of the identified components and tools to be easy to use, well documented, and most importantly, mature for consumption by our target user, until I encountered the MQTT-SN (MQTT-Sensor Network) implementation, not as mature as the rest. This resulted in us designing and implementing a light-weight, general ZigBee/MQTT gateway, named “yoGa” (Yonella's Gateway) from the author. At the end of the research, I was able to build the field components of a smart irrigation system using the selected tools, including the yoGa gateway, proving practically that a Computer Science graduate from a South African University can become productive in the emerging IoT area. , Thesis (MSc) -- Faculty of Science, Computer Science, 2021
- Full Text:
- Date Issued: 2021-10
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