An investigation into the possible neuroprotective or neurotoxic properties of metrifonate
- Authors: Ramsunder, Adrusha
- Date: 2005 , 2013-06-11
- Subjects: Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Alzheimer's disease -- Treatment , Metrifonate
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3833 , http://hdl.handle.net/10962/d1007560 , Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Alzheimer's disease -- Treatment , Metrifonate
- Description: Alzheimer's disease is a progressive neurodegenerative disorder, in which there is a marked decline in neurotransmitters, especially those of the cholinergic pathways. One of the approaches to the symptomatic treatment of Alzheimer's disease is the inhibition of the breakdown of the neurotransmitter acetylcholine, using an acetylcholinesterase inhibitor. One such drug tested, is the organophosphate, metrifonate. Any drug used for the treatment of neurodegenerative disorders should preferably not induce further neurological damage. Thus, in the present study, we investigated whether or not metrifonate is neuroprotective. The in vivo and in vitro effect of this drug on free radicals generation shows that metrifonate increases the level ofthese reactive species. Lipid peroxidation induced using quinolinic acid (QA) and iron (II) and show that metrifonate increased the peroxidative damage induced by using quinolinic acid. Metrifonate is also able to induce lipid peroxidation both in vivo and in vitro. This was reduced in vitro in the presence of melatonin. Using iron (II), in vi/ro, there was no significant difference in the level of lipid peroxidation in the presence of this drug. An investigation of the activity of the mitochondrial electron transport chain and complex I of the electron transport chain in the presence of metrifonate revealed that metrifonate reduces the activity of the electron transport chain at the level of complex I. The activity of the mitochondrial electron transport chain was restored in the presence of melatonin. Pineal organ culture showed that metrifonate does not increase melatonin production. Histological and apoptosis studies show that tissue necrosis and apoptosis respectively, occur in the presence of this agent, which is reduced in the presence of melatonin. Metal binding studies were performed USing ultraviolet spectroscopy, and electrochemical analysis to examine the interaction of metrifonate with iron (II) and iron (III). No shift in the peak was observed in the ultraviolet spectrum when iron (ll) was added to metrifonate. Electrochemical studies show that there may be a very weak or no ligand formed between the metal and drug. This study shows that while drugs such as metrifonate may be beneficial in restoring cognitive function in Alzheimer's disease, it could also have the potential to enhance neurodegeneration, thus worsening the condition, in the long term. , KMBT_363 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2005
- Authors: Ramsunder, Adrusha
- Date: 2005 , 2013-06-11
- Subjects: Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Alzheimer's disease -- Treatment , Metrifonate
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3833 , http://hdl.handle.net/10962/d1007560 , Nervous system -- Degeneration -- Treatment , Neurotoxic agents , Alzheimer's disease -- Treatment , Metrifonate
- Description: Alzheimer's disease is a progressive neurodegenerative disorder, in which there is a marked decline in neurotransmitters, especially those of the cholinergic pathways. One of the approaches to the symptomatic treatment of Alzheimer's disease is the inhibition of the breakdown of the neurotransmitter acetylcholine, using an acetylcholinesterase inhibitor. One such drug tested, is the organophosphate, metrifonate. Any drug used for the treatment of neurodegenerative disorders should preferably not induce further neurological damage. Thus, in the present study, we investigated whether or not metrifonate is neuroprotective. The in vivo and in vitro effect of this drug on free radicals generation shows that metrifonate increases the level ofthese reactive species. Lipid peroxidation induced using quinolinic acid (QA) and iron (II) and show that metrifonate increased the peroxidative damage induced by using quinolinic acid. Metrifonate is also able to induce lipid peroxidation both in vivo and in vitro. This was reduced in vitro in the presence of melatonin. Using iron (II), in vi/ro, there was no significant difference in the level of lipid peroxidation in the presence of this drug. An investigation of the activity of the mitochondrial electron transport chain and complex I of the electron transport chain in the presence of metrifonate revealed that metrifonate reduces the activity of the electron transport chain at the level of complex I. The activity of the mitochondrial electron transport chain was restored in the presence of melatonin. Pineal organ culture showed that metrifonate does not increase melatonin production. Histological and apoptosis studies show that tissue necrosis and apoptosis respectively, occur in the presence of this agent, which is reduced in the presence of melatonin. Metal binding studies were performed USing ultraviolet spectroscopy, and electrochemical analysis to examine the interaction of metrifonate with iron (II) and iron (III). No shift in the peak was observed in the ultraviolet spectrum when iron (ll) was added to metrifonate. Electrochemical studies show that there may be a very weak or no ligand formed between the metal and drug. This study shows that while drugs such as metrifonate may be beneficial in restoring cognitive function in Alzheimer's disease, it could also have the potential to enhance neurodegeneration, thus worsening the condition, in the long term. , KMBT_363 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2005
The feeding ecology, habitat selection and hunting behaviour of re-introduced cheetah on Kwandwe Private Game Reserve, Eastern Cape Province
- Authors: Bissett, Charlene
- Date: 2005
- Subjects: Kwandwe Game Reserve (South Africa) , Cheetah -- Behavior -- South Africa -- Eastern Cape , Cheetah -- Nutrition -- South Africa -- Eastern Cape , Cheetah -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5698 , http://hdl.handle.net/10962/d1005384 , Kwandwe Game Reserve (South Africa) , Cheetah -- Behavior -- South Africa -- Eastern Cape , Cheetah -- Nutrition -- South Africa -- Eastern Cape , Cheetah -- South Africa -- Eastern Cape
- Description: The re-introduction of cheetah onto small reserves in the Eastern Cape Province has created the opportunity to study this species in an environment (Valley Bushveld) in which it has not previously been studied and which is quite different from the less wooded habitats in which previous studies have occurred. Thus the aim of this study is to add to the growing number of studies of cheetah in more wooded habitats and to contribute a better understanding of the level of specialization or adaptability in space use, habitat selection, diet and hunting behaviour that the cheetah possesses. The research was conducted on Kwandwe Private Game Reserve from February 2003 to August 2004. Direct observations, scat analysis and continuous observations were used to avoid bias towards large sized prey found when only using direct observations to study diet. The cheetah killed 15 species and four of the five most important prey species (kudu, springbok, grey duiker and bushbuck) were hunted according to their abundance on the reserve, while impala, the fifth most important prey species, was avoided (i.e. preference index less than one) by the cheetah. The cheetah’s main prey was medium sized ungulates, although the three male coalition killed larger prey than females and females with cubs. The daily food intake per cheetah per day was calculated to range from 5.3kg/cheetah/day for the coalition to 8kg/cheetah/day for a solitary female. Home range areas ranged from 11.1 km² for female cheetah with cubs in a den to 65.6 km² for single female cheetah and core areas ranged from 6 km² for the three male coalition to 26.5 km² for independent cubs. Habitat selection by cheetah on Kwandwe varied between the social groups depending on their susceptibility to predation by lions, their need for cover and need for water, and was similar to what has been previously reported. The home range of the coalition incorporated the most open vegetation type (karroid shrubland) with surrounding denser vegetation, while females occupied areas of denser vegetation. Activity patterns and hunting behaviour varied between different cheetah social groups with female cheetah being more active during day light hours compared to males which made 38% of their kills after dark. The average chase distances for the various cheetah groups varied considerably, and the chase distance for successful hunts was longer than for unsuccessful for all groups except single female cheetah. The percentage of kills’ kleptoparasitised on Kwandwe was very low compared to other studies possibly due to the low density of direct competitors, which in turn lead to longer mean kill retention times. These results suggest that cheetah are more adaptable than previously thought and this adaptability may have important implications for their conservation.
- Full Text:
- Date Issued: 2005
- Authors: Bissett, Charlene
- Date: 2005
- Subjects: Kwandwe Game Reserve (South Africa) , Cheetah -- Behavior -- South Africa -- Eastern Cape , Cheetah -- Nutrition -- South Africa -- Eastern Cape , Cheetah -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5698 , http://hdl.handle.net/10962/d1005384 , Kwandwe Game Reserve (South Africa) , Cheetah -- Behavior -- South Africa -- Eastern Cape , Cheetah -- Nutrition -- South Africa -- Eastern Cape , Cheetah -- South Africa -- Eastern Cape
- Description: The re-introduction of cheetah onto small reserves in the Eastern Cape Province has created the opportunity to study this species in an environment (Valley Bushveld) in which it has not previously been studied and which is quite different from the less wooded habitats in which previous studies have occurred. Thus the aim of this study is to add to the growing number of studies of cheetah in more wooded habitats and to contribute a better understanding of the level of specialization or adaptability in space use, habitat selection, diet and hunting behaviour that the cheetah possesses. The research was conducted on Kwandwe Private Game Reserve from February 2003 to August 2004. Direct observations, scat analysis and continuous observations were used to avoid bias towards large sized prey found when only using direct observations to study diet. The cheetah killed 15 species and four of the five most important prey species (kudu, springbok, grey duiker and bushbuck) were hunted according to their abundance on the reserve, while impala, the fifth most important prey species, was avoided (i.e. preference index less than one) by the cheetah. The cheetah’s main prey was medium sized ungulates, although the three male coalition killed larger prey than females and females with cubs. The daily food intake per cheetah per day was calculated to range from 5.3kg/cheetah/day for the coalition to 8kg/cheetah/day for a solitary female. Home range areas ranged from 11.1 km² for female cheetah with cubs in a den to 65.6 km² for single female cheetah and core areas ranged from 6 km² for the three male coalition to 26.5 km² for independent cubs. Habitat selection by cheetah on Kwandwe varied between the social groups depending on their susceptibility to predation by lions, their need for cover and need for water, and was similar to what has been previously reported. The home range of the coalition incorporated the most open vegetation type (karroid shrubland) with surrounding denser vegetation, while females occupied areas of denser vegetation. Activity patterns and hunting behaviour varied between different cheetah social groups with female cheetah being more active during day light hours compared to males which made 38% of their kills after dark. The average chase distances for the various cheetah groups varied considerably, and the chase distance for successful hunts was longer than for unsuccessful for all groups except single female cheetah. The percentage of kills’ kleptoparasitised on Kwandwe was very low compared to other studies possibly due to the low density of direct competitors, which in turn lead to longer mean kill retention times. These results suggest that cheetah are more adaptable than previously thought and this adaptability may have important implications for their conservation.
- Full Text:
- Date Issued: 2005
The role of anthropogenic disturbance in the creation of a socio-ecological landscape
- Authors: Fox, Helen Elizabeth
- Date: 2005
- Subjects: Human ecology -- South Africa -- Kat River Valley , Land use -- Environmental aspects-- South Africa -- Kat River Valley , Landscapes -- Social aspects -- South Africa -- Kat River Valley , Landscape ecology -- South Africa -- Kat River Valley , Vegetation and climate -- South Africa -- Kat River Valley , Xhosa (African people) -- Folklore , Kat River Valley (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4772 , http://hdl.handle.net/10962/d1008061 , Human ecology -- South Africa -- Kat River Valley , Land use -- Environmental aspects-- South Africa -- Kat River Valley , Landscapes -- Social aspects -- South Africa -- Kat River Valley , Landscape ecology -- South Africa -- Kat River Valley , Vegetation and climate -- South Africa -- Kat River Valley , Xhosa (African people) -- Folklore , Kat River Valley (South Africa)
- Description: The aim of this thesis is to examine the role of anthropogenic disturbance in the creation of a socio-ecological landscape. Three key questions were answered: what impact has past anthropogenic disturbance had on present vegetative characteristics; what value did this disturbed landscape have to local people; how did the local peoples' worldviews and eco-cosmologies influence how they perceived, valued and managed their landscape? Research was based in a rural, predominantly amaXhosa village in the Kat River valley, Eastern Cape, South Africa. Four major landscape components characterised the environment, namely dense forests, former grazing lands, abandoned fields and old settlements. A combination of qualitative and quantitative methods were adopted, consisting of a vegetation and soil survey and social science methods including semistructured interviews, focus groups, transect walks and participant observation. The key finding was that anthropogenic disturbance is necessary to enhance the potential of the area to support human habitation. However, anthropogenic disturbance can have positive or negative effects for both local people and the environment. An intermediate level of disturbance is a key factor leading to a resilient socio-ecological system. Various anthropogenic disturbances have had significant affects on vegetation characteristics in terms of species richness, and a change in vegetation composition and species heights. Of the three anthropogenic landscapes examined, former grazing lands were the least intensively disturbed. They were also more species rich and structurally diverse than areas that were under agricultural production or used as a settlement. Dense forests, although the least desirable landscape to local people were, together with sacred pools, sources of ecosystem renewal and played a critical role during times of disturbance. Anthropogenic disturbance has added value to local people's livelihoods; this disturbance has resulted in a patchy landscape that supplies a wide variety of resources to local people. Local people are dependent on their environment for their basic needs; this has encouraged sustainable management practices. The local AmaXhosa still retain many elements of their traditional worldview, which has many characteristics of Animism. The environment is an integral component of their belief system and certain sites and species have significant cultural value and are protected.
- Full Text:
- Date Issued: 2005
- Authors: Fox, Helen Elizabeth
- Date: 2005
- Subjects: Human ecology -- South Africa -- Kat River Valley , Land use -- Environmental aspects-- South Africa -- Kat River Valley , Landscapes -- Social aspects -- South Africa -- Kat River Valley , Landscape ecology -- South Africa -- Kat River Valley , Vegetation and climate -- South Africa -- Kat River Valley , Xhosa (African people) -- Folklore , Kat River Valley (South Africa)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4772 , http://hdl.handle.net/10962/d1008061 , Human ecology -- South Africa -- Kat River Valley , Land use -- Environmental aspects-- South Africa -- Kat River Valley , Landscapes -- Social aspects -- South Africa -- Kat River Valley , Landscape ecology -- South Africa -- Kat River Valley , Vegetation and climate -- South Africa -- Kat River Valley , Xhosa (African people) -- Folklore , Kat River Valley (South Africa)
- Description: The aim of this thesis is to examine the role of anthropogenic disturbance in the creation of a socio-ecological landscape. Three key questions were answered: what impact has past anthropogenic disturbance had on present vegetative characteristics; what value did this disturbed landscape have to local people; how did the local peoples' worldviews and eco-cosmologies influence how they perceived, valued and managed their landscape? Research was based in a rural, predominantly amaXhosa village in the Kat River valley, Eastern Cape, South Africa. Four major landscape components characterised the environment, namely dense forests, former grazing lands, abandoned fields and old settlements. A combination of qualitative and quantitative methods were adopted, consisting of a vegetation and soil survey and social science methods including semistructured interviews, focus groups, transect walks and participant observation. The key finding was that anthropogenic disturbance is necessary to enhance the potential of the area to support human habitation. However, anthropogenic disturbance can have positive or negative effects for both local people and the environment. An intermediate level of disturbance is a key factor leading to a resilient socio-ecological system. Various anthropogenic disturbances have had significant affects on vegetation characteristics in terms of species richness, and a change in vegetation composition and species heights. Of the three anthropogenic landscapes examined, former grazing lands were the least intensively disturbed. They were also more species rich and structurally diverse than areas that were under agricultural production or used as a settlement. Dense forests, although the least desirable landscape to local people were, together with sacred pools, sources of ecosystem renewal and played a critical role during times of disturbance. Anthropogenic disturbance has added value to local people's livelihoods; this disturbance has resulted in a patchy landscape that supplies a wide variety of resources to local people. Local people are dependent on their environment for their basic needs; this has encouraged sustainable management practices. The local AmaXhosa still retain many elements of their traditional worldview, which has many characteristics of Animism. The environment is an integral component of their belief system and certain sites and species have significant cultural value and are protected.
- Full Text:
- Date Issued: 2005
Phylogeography and comparative ecophysiology of Chrysanthemoides Turn. Ex Medik. (Tribe Calenduleae)
- Authors: Howis, Seranne
- Date: 2005
- Subjects: Chrysanthemoides , Phylogeny , Ecophysiology , DNA , Plant genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4256 , http://hdl.handle.net/10962/d1008189
- Description: Chrysanthem Oides is a common Southern African shrub that grows in a variety of habitats. From coastal shrubland and fynbos to mountainous areas as far north as Kenya. The genus has two species and 8 subspecies. The diagnoses and delimitation of which have been based almost exclusively on morphological characteristics. This project aims to investigate, with the use of phylogenetic species concepts. The validity of these subspecies. Unlike biological species concepts that rely on reproductive isolation as a defining character of a species. Phylogenetic species concepts (PSC) are concerned with delimiting evolutionary significant units (ESUs). ESUs are evolutionarily isolated lineages, and under the PSC a species is an aggregation of organisms consistently diagnosable by a fixed character or combination of characters. This project therefore searched for genetic and physiological characters by which to delimit ESUs within the Cill), samhemoides genus. DNA sequencing was used to investigate the genetic characters, while gas exchange studies were used to investigate the ecophysiological characters. DNA sequence analysis indicated that the ESUs can be diagnosed by genetic means and that one species may be of hybrid origin. Field studies of three disparate genetically identifiable ESUs from three disparate climates found that there are noticeable differences in ecophysiological responses of these ESUs in the field. Plants from each ESU were transferred to a greenhouse and grown under identical conditions for several months and compared to determine if these traits are inherent, or elastic in relation to environmental conditions. Under simulated high rainfall conditions. There does not appear to be a significant difference in the photosynthetic traits.
- Full Text:
- Date Issued: 2005
Phylogeography and comparative ecophysiology of Chrysanthemoides Turn. Ex Medik. (Tribe Calenduleae)
- Authors: Howis, Seranne
- Date: 2005
- Subjects: Chrysanthemoides , Phylogeny , Ecophysiology , DNA , Plant genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4256 , http://hdl.handle.net/10962/d1008189
- Description: Chrysanthem Oides is a common Southern African shrub that grows in a variety of habitats. From coastal shrubland and fynbos to mountainous areas as far north as Kenya. The genus has two species and 8 subspecies. The diagnoses and delimitation of which have been based almost exclusively on morphological characteristics. This project aims to investigate, with the use of phylogenetic species concepts. The validity of these subspecies. Unlike biological species concepts that rely on reproductive isolation as a defining character of a species. Phylogenetic species concepts (PSC) are concerned with delimiting evolutionary significant units (ESUs). ESUs are evolutionarily isolated lineages, and under the PSC a species is an aggregation of organisms consistently diagnosable by a fixed character or combination of characters. This project therefore searched for genetic and physiological characters by which to delimit ESUs within the Cill), samhemoides genus. DNA sequencing was used to investigate the genetic characters, while gas exchange studies were used to investigate the ecophysiological characters. DNA sequence analysis indicated that the ESUs can be diagnosed by genetic means and that one species may be of hybrid origin. Field studies of three disparate genetically identifiable ESUs from three disparate climates found that there are noticeable differences in ecophysiological responses of these ESUs in the field. Plants from each ESU were transferred to a greenhouse and grown under identical conditions for several months and compared to determine if these traits are inherent, or elastic in relation to environmental conditions. Under simulated high rainfall conditions. There does not appear to be a significant difference in the photosynthetic traits.
- Full Text:
- Date Issued: 2005
Growth, feeding and sex change in the sequential protandric shrimp Nauticaris marionis Bate 1888 at the Prince Edward Islands (Southern Ocean)
- Authors: Vumazonke, Lukhanyiso Unam
- Date: 2005
- Subjects: Shrimps -- Prince Edward Islands , Shrimps -- Feeding and feeds , Shrimps -- Nutrition , Shrimps -- Growth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5704 , http://hdl.handle.net/10962/d1005390 , Shrimps -- Prince Edward Islands , Shrimps -- Feeding and feeds , Shrimps -- Nutrition , Shrimps -- Growth
- Description: Demographic parameters and the general biology of the subantarctic shrimp Nauticaris marionis from the Prince Edward Islands were investigated. The carapace length is the most accurate indicator of body size and it was confirmed that N. marionis is a partially protandric hermaphrodite. Gravid females of N. marionis observed mainly in March with negligible hatching persisting until April/May. The majority of juveniles develop into males. Juveniles are characterised by an appendage on the endopodite of the first pleopod called the appendix interna or a.i.1. Juveniles that develop into males do so by growing a further appendage on the endopodite of the second pleopod. This appendage characterises males and is called the appendix masculina (or a.m.). Juveniles may develop directly into primary females through the development of an ovary and the loss of the a.i.1. The sequence differs among individuals, with some developing the ovary before losing the a.i.1 and others losing the a.i.1 first. Loss of the a.i.1 appears to be by shedding during a single moult, rather than by atrophy. Females can also develop by an alternative route as secondary females. Such animals first become males with an a.m. and then develop an ovary, thus forming an intermediate form called a tertium quid, or “third thing”. Again, there are two forms of tertium quid. Tertia quae a have the a.m. as well as the a.i.1. Tertia quae b have the a.m. in combination with an ovary but no a.i.1. Either form of tertium quid can develop into a secondary female through loss of the a.m., and in the case of the tertium quid a, loss of the a.i.1. It is unclear whether sexual differentiation occurs in the plankton or just after N. marionis settles on the benthos. The results of gut content analysis suggest that N. marionis is an opportunistic feeder, preying on a variety of prey with a preference for detritus, benthic amphipods and gastropods. Cannibalism of conspecific pleopods by large individuals of N. marionis occurred mostly in females, particularly in incubation containers. Cannibalism also occurs in males, and its occurrence depends on individual size, not gender. No diel patterns were observed in the feeding activity of N. marionis. In situ daily rations of males (carapace length <7mm) and females (>7mm) were equivalent to ≈10% and ≈5% of body dry weight, respectively. The von Bertalanffy growth curve parameters were empirically identified, by cohort analysis of data collected during 4 years, as K = 0.22239/year, L[subscript]∞ = 14.05789mm, t₀ = -0.05174, L₀ = 0.16083mm. N. marionis can survive up to seven years under natural conditions.
- Full Text:
- Date Issued: 2005
- Authors: Vumazonke, Lukhanyiso Unam
- Date: 2005
- Subjects: Shrimps -- Prince Edward Islands , Shrimps -- Feeding and feeds , Shrimps -- Nutrition , Shrimps -- Growth
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5704 , http://hdl.handle.net/10962/d1005390 , Shrimps -- Prince Edward Islands , Shrimps -- Feeding and feeds , Shrimps -- Nutrition , Shrimps -- Growth
- Description: Demographic parameters and the general biology of the subantarctic shrimp Nauticaris marionis from the Prince Edward Islands were investigated. The carapace length is the most accurate indicator of body size and it was confirmed that N. marionis is a partially protandric hermaphrodite. Gravid females of N. marionis observed mainly in March with negligible hatching persisting until April/May. The majority of juveniles develop into males. Juveniles are characterised by an appendage on the endopodite of the first pleopod called the appendix interna or a.i.1. Juveniles that develop into males do so by growing a further appendage on the endopodite of the second pleopod. This appendage characterises males and is called the appendix masculina (or a.m.). Juveniles may develop directly into primary females through the development of an ovary and the loss of the a.i.1. The sequence differs among individuals, with some developing the ovary before losing the a.i.1 and others losing the a.i.1 first. Loss of the a.i.1 appears to be by shedding during a single moult, rather than by atrophy. Females can also develop by an alternative route as secondary females. Such animals first become males with an a.m. and then develop an ovary, thus forming an intermediate form called a tertium quid, or “third thing”. Again, there are two forms of tertium quid. Tertia quae a have the a.m. as well as the a.i.1. Tertia quae b have the a.m. in combination with an ovary but no a.i.1. Either form of tertium quid can develop into a secondary female through loss of the a.m., and in the case of the tertium quid a, loss of the a.i.1. It is unclear whether sexual differentiation occurs in the plankton or just after N. marionis settles on the benthos. The results of gut content analysis suggest that N. marionis is an opportunistic feeder, preying on a variety of prey with a preference for detritus, benthic amphipods and gastropods. Cannibalism of conspecific pleopods by large individuals of N. marionis occurred mostly in females, particularly in incubation containers. Cannibalism also occurs in males, and its occurrence depends on individual size, not gender. No diel patterns were observed in the feeding activity of N. marionis. In situ daily rations of males (carapace length <7mm) and females (>7mm) were equivalent to ≈10% and ≈5% of body dry weight, respectively. The von Bertalanffy growth curve parameters were empirically identified, by cohort analysis of data collected during 4 years, as K = 0.22239/year, L[subscript]∞ = 14.05789mm, t₀ = -0.05174, L₀ = 0.16083mm. N. marionis can survive up to seven years under natural conditions.
- Full Text:
- Date Issued: 2005
Establishment and impact of the sap-sucking mirid, Falconia intermedia (Distant) (Hemiptera: Miridae) on Lantana camara (Verbenaceae) varieties in the Eastern Cape Province, South Africa
- Heshula, Unathi-Nkosi Lelethu Peter
- Authors: Heshula, Unathi-Nkosi Lelethu Peter
- Date: 2005
- Subjects: Lantana camara -- South Africa -- Eastern Cape , Biological pest control agents -- South Africa -- Eastern Cape , Hemiptera -- South Africa -- Eastern Cape , Miridae -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5832 , http://hdl.handle.net/10962/d1008085
- Description: The biological control of the weedy complex Lantana camara (L.) (Verbenaceae) has been ongoing in South Africa for over 40 years. Despite this, the weed is still not under sufficient control and continues to invade new territories in the country. The biological control programme needs to be bolstered with releases of new and potentially damaging biological control agents. A promising biological control agent endemic to Central America, Falconia intermedia (Distant) (Hemiptera: Miridae), was imported into quarantine from Jamaica in 1994. This agent was released on sites in KwaZulu-Natal and Limpopo provinces of South Africa in 1999. Even though it initially established and damaged L. camara, populations died out at most of the release sites. As varietal difference and adverse climate have been cited as the reason for non-establishment and ineffective control in L. camara biocontrol programmes worldwide, this study attempts to investigate the role that these two factors play in this weed herbivore relationship. Laboratory no-choice trials were conducted to determine the varietal performance of F intermedia, among five Eastern Cape varieties of the weed from East London, Whitney Farm, Heather Glen Farm, Port Alfred and Lyndhurst Farm, and a variety from the Plant Protection Research Institute (PPRI), Pretoria. However, there were differences in performance as the adult mirids performed better on white-pink varieties from Whitney Farm and Heather Glen Farm. To test varietal preference in field conditions, field releases of F intermedia were also made at East London, Whitney Farm, Heather Glen Farm, Port Alfred and Lyndhurst Farm. Post release evaluations were conducted monthly for two years (2002 and 2003). The insect established at East London and Whitney Farm, both of which have white-pink varieties. Insect populations quickly died out at the Lyndhurst Farm and Port Alfred sites, which have dark pink varieties. It is suggested that field conditions may have resulted in poor plant quality and led indirectly to varietal preference, and to non-establishment at these two sites. With the onset of cooler weather, populations disappeared at Heather Glen Farm. This suggested that F. intermedia was suitable for release in more subtropical areas within South Africa where climatic conditions would be suitable throughout the year. The mirid performed well at Whitney Farm, resulting in significant reduction in plant growth parameters such as height and percentage cover, and increasing the cover of other flora growing beneath L. camara plants. Finally, ways to improve the efficacy of this agent are considered in an effort towards better control of L. camara in South Africa.
- Full Text:
- Date Issued: 2005
- Authors: Heshula, Unathi-Nkosi Lelethu Peter
- Date: 2005
- Subjects: Lantana camara -- South Africa -- Eastern Cape , Biological pest control agents -- South Africa -- Eastern Cape , Hemiptera -- South Africa -- Eastern Cape , Miridae -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5832 , http://hdl.handle.net/10962/d1008085
- Description: The biological control of the weedy complex Lantana camara (L.) (Verbenaceae) has been ongoing in South Africa for over 40 years. Despite this, the weed is still not under sufficient control and continues to invade new territories in the country. The biological control programme needs to be bolstered with releases of new and potentially damaging biological control agents. A promising biological control agent endemic to Central America, Falconia intermedia (Distant) (Hemiptera: Miridae), was imported into quarantine from Jamaica in 1994. This agent was released on sites in KwaZulu-Natal and Limpopo provinces of South Africa in 1999. Even though it initially established and damaged L. camara, populations died out at most of the release sites. As varietal difference and adverse climate have been cited as the reason for non-establishment and ineffective control in L. camara biocontrol programmes worldwide, this study attempts to investigate the role that these two factors play in this weed herbivore relationship. Laboratory no-choice trials were conducted to determine the varietal performance of F intermedia, among five Eastern Cape varieties of the weed from East London, Whitney Farm, Heather Glen Farm, Port Alfred and Lyndhurst Farm, and a variety from the Plant Protection Research Institute (PPRI), Pretoria. However, there were differences in performance as the adult mirids performed better on white-pink varieties from Whitney Farm and Heather Glen Farm. To test varietal preference in field conditions, field releases of F intermedia were also made at East London, Whitney Farm, Heather Glen Farm, Port Alfred and Lyndhurst Farm. Post release evaluations were conducted monthly for two years (2002 and 2003). The insect established at East London and Whitney Farm, both of which have white-pink varieties. Insect populations quickly died out at the Lyndhurst Farm and Port Alfred sites, which have dark pink varieties. It is suggested that field conditions may have resulted in poor plant quality and led indirectly to varietal preference, and to non-establishment at these two sites. With the onset of cooler weather, populations disappeared at Heather Glen Farm. This suggested that F. intermedia was suitable for release in more subtropical areas within South Africa where climatic conditions would be suitable throughout the year. The mirid performed well at Whitney Farm, resulting in significant reduction in plant growth parameters such as height and percentage cover, and increasing the cover of other flora growing beneath L. camara plants. Finally, ways to improve the efficacy of this agent are considered in an effort towards better control of L. camara in South Africa.
- Full Text:
- Date Issued: 2005
A floristic study of a portion of the Pondoland Centre of Endeminism, Port St Johns, South Africa
- Authors: Cloete, Elizabeth Carinus
- Date: 2005
- Subjects: Endemic plants -- South Africa -- Port St Johns , Phytogeography -- South Africa -- Port St Johns , Plants -- South Africa -- Port St Johns , Alien plants -- South Africa -- Port St Johns
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4188 , http://hdl.handle.net/10962/d1003757 , Endemic plants -- South Africa -- Port St Johns , Phytogeography -- South Africa -- Port St Johns , Plants -- South Africa -- Port St Johns , Alien plants -- South Africa -- Port St Johns
- Description: Analysis of the flora of the Pondoland Centre of Endemism (PCE) recorded 2253 species in the combined checklist of four sites (Port St. Johns, Mkambati, Umtamvuna and Oribi Gorge). Of these 1 % species are endemic to Pondoland, representing 8.7% of the Species, 15% of the genera and 26% of the families of the combined flora. Forty-four percent ofthe combined flora was only recorded from one locality (between 17% and 26% of each flora) and only 12% of the flora was present in all four localities. Of the endemics only sixteen (8%) occurred in all four sites thus each site had its own complement of unique endemics and 21 % endemics were not recorded from any of the four sites. At species level the floras of Mkambati and Umtamvuna were the most similar, followed by that of Umtamvuna and Oribi Gorge. Port St Johns had the least in common with any of the othersites, but more in common with non-neighbours Umtamvuna and Oribi Gorge than with its nearest neighbour Mkambati. Mkambati and Umtamvuna had the largest proportion of PCE endemics and Port St Johns had the lowest. The four sites are quite similar at family level, sharing thirteen families in the top ten family list between them, but much less similar at generic level.
- Full Text:
- Date Issued: 2005
- Authors: Cloete, Elizabeth Carinus
- Date: 2005
- Subjects: Endemic plants -- South Africa -- Port St Johns , Phytogeography -- South Africa -- Port St Johns , Plants -- South Africa -- Port St Johns , Alien plants -- South Africa -- Port St Johns
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4188 , http://hdl.handle.net/10962/d1003757 , Endemic plants -- South Africa -- Port St Johns , Phytogeography -- South Africa -- Port St Johns , Plants -- South Africa -- Port St Johns , Alien plants -- South Africa -- Port St Johns
- Description: Analysis of the flora of the Pondoland Centre of Endemism (PCE) recorded 2253 species in the combined checklist of four sites (Port St. Johns, Mkambati, Umtamvuna and Oribi Gorge). Of these 1 % species are endemic to Pondoland, representing 8.7% of the Species, 15% of the genera and 26% of the families of the combined flora. Forty-four percent ofthe combined flora was only recorded from one locality (between 17% and 26% of each flora) and only 12% of the flora was present in all four localities. Of the endemics only sixteen (8%) occurred in all four sites thus each site had its own complement of unique endemics and 21 % endemics were not recorded from any of the four sites. At species level the floras of Mkambati and Umtamvuna were the most similar, followed by that of Umtamvuna and Oribi Gorge. Port St Johns had the least in common with any of the othersites, but more in common with non-neighbours Umtamvuna and Oribi Gorge than with its nearest neighbour Mkambati. Mkambati and Umtamvuna had the largest proportion of PCE endemics and Port St Johns had the lowest. The four sites are quite similar at family level, sharing thirteen families in the top ten family list between them, but much less similar at generic level.
- Full Text:
- Date Issued: 2005
Development and assessment of medicines information for antiretroviral therapy in Sub-Saharan Africa
- Authors: Mwingira, Betty
- Date: 2005
- Subjects: AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3779 , http://hdl.handle.net/10962/d1003257 , AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Full Text:
- Date Issued: 2005
Development and assessment of medicines information for antiretroviral therapy in Sub-Saharan Africa
- Authors: Mwingira, Betty
- Date: 2005
- Subjects: AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3779 , http://hdl.handle.net/10962/d1003257 , AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Full Text:
- Date Issued: 2005
Identification of cis-elements and transacting factors involved in the abiotic stress responses of plants
- Authors: Maclear, Athlee
- Date: 2005 , 2013-06-10
- Subjects: Plants -- Effect of stress on , Proteins -- Analysis , Bioinformatics , DNA , Plant genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4074 , http://hdl.handle.net/10962/d1007236 , Plants -- Effect of stress on , Proteins -- Analysis , Bioinformatics , DNA , Plant genetics
- Description: Many stress situations limit plant growth, resulting in crop production difficulties. Population growth, limited availability and over-utilization of arable land, and intolerant crop species have resulted in tremendous strain being placed on agriculturalists to produce enough to sustain the world's population. An understanding of the principles involved in plant resistance to environmental stress will enable scientists to harness these mechanisms to create stress-tolerant crop species, thus increasing crop production, and enabling the farming of previously unproductive land. This research project uses computational and bioinformatics techniques to explore the promoter regions of genes, encoding proteins that are up- or down-regulated in response to specific abiotic stresses, with the aim of identifying common patterns in the cis-elements governing the regulation of these abiotic stress responsive genes. An initial dataset of fifty known genes encoding for proteins reported to be up- or down-regulated in response to plant stresses that result in water-deficit at the cellular level viz. drought, low temperature, and salinity, were identified, and a postgreSQL database created to store relevant information pertaining to these genes and the proteins encoded by them. The genomic DNA was obtained where possible, and the promoter and intron regions identified. The Neural Network Promoter Prediction (NNPP) software package was used to predict the transcription start signal (TSS) and the promoter searching software tool, TESS (Transcription Element Search Software) used to identify known and user-defined cis-elements within the promoter regions of these genes. Currently available promoter prediction software analysis tools are reported to predict one promoter per kilobase of DNA, whilst functional promoters are thought to only occur one in 30-40 kilobases, which indicates that a large perccntage of predictions are likely to be false positives (pedersen et. al., 1999). NNPP was chosen as it was rated as the highest performing promoter prediction software tool by Fickett and Hatzigeorgiou (1997) in a thorough review of eukaryotic promoter prediction algorithms, however results were less than promising as very few predicted TSS were identified in the area 50 bps up- and downstream of the gene start site, where biologically functional TSSs are known to occur (Reese, 2000; Fickett and Hatzigeorgiou, 1997). TESS results seemed to support the hypothesis that drought, low-temperature and high salinity plant stress response proteins have similar as-elements in their promoter regions, and suggested links to various other gene regulation mechanisms viz. gibberellin-, light-, auxin- and development-regulated gene expression, highlighting the vast complexity of plant stress response processes. Although far from conclusive, results provide a valuable basis for future comparative promoter studies that will attempt to deduce possible common transcriptional initiation of abiotic stress response genes. , KMBT_363 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2005
- Authors: Maclear, Athlee
- Date: 2005 , 2013-06-10
- Subjects: Plants -- Effect of stress on , Proteins -- Analysis , Bioinformatics , DNA , Plant genetics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4074 , http://hdl.handle.net/10962/d1007236 , Plants -- Effect of stress on , Proteins -- Analysis , Bioinformatics , DNA , Plant genetics
- Description: Many stress situations limit plant growth, resulting in crop production difficulties. Population growth, limited availability and over-utilization of arable land, and intolerant crop species have resulted in tremendous strain being placed on agriculturalists to produce enough to sustain the world's population. An understanding of the principles involved in plant resistance to environmental stress will enable scientists to harness these mechanisms to create stress-tolerant crop species, thus increasing crop production, and enabling the farming of previously unproductive land. This research project uses computational and bioinformatics techniques to explore the promoter regions of genes, encoding proteins that are up- or down-regulated in response to specific abiotic stresses, with the aim of identifying common patterns in the cis-elements governing the regulation of these abiotic stress responsive genes. An initial dataset of fifty known genes encoding for proteins reported to be up- or down-regulated in response to plant stresses that result in water-deficit at the cellular level viz. drought, low temperature, and salinity, were identified, and a postgreSQL database created to store relevant information pertaining to these genes and the proteins encoded by them. The genomic DNA was obtained where possible, and the promoter and intron regions identified. The Neural Network Promoter Prediction (NNPP) software package was used to predict the transcription start signal (TSS) and the promoter searching software tool, TESS (Transcription Element Search Software) used to identify known and user-defined cis-elements within the promoter regions of these genes. Currently available promoter prediction software analysis tools are reported to predict one promoter per kilobase of DNA, whilst functional promoters are thought to only occur one in 30-40 kilobases, which indicates that a large perccntage of predictions are likely to be false positives (pedersen et. al., 1999). NNPP was chosen as it was rated as the highest performing promoter prediction software tool by Fickett and Hatzigeorgiou (1997) in a thorough review of eukaryotic promoter prediction algorithms, however results were less than promising as very few predicted TSS were identified in the area 50 bps up- and downstream of the gene start site, where biologically functional TSSs are known to occur (Reese, 2000; Fickett and Hatzigeorgiou, 1997). TESS results seemed to support the hypothesis that drought, low-temperature and high salinity plant stress response proteins have similar as-elements in their promoter regions, and suggested links to various other gene regulation mechanisms viz. gibberellin-, light-, auxin- and development-regulated gene expression, highlighting the vast complexity of plant stress response processes. Although far from conclusive, results provide a valuable basis for future comparative promoter studies that will attempt to deduce possible common transcriptional initiation of abiotic stress response genes. , KMBT_363 , Adobe Acrobat 9.54 Paper Capture Plug-in
- Full Text:
- Date Issued: 2005
Isolation, purification and characterization of inulin and fructooligosaccharides from chicorium intybus and inulinase from aspergillus niger
- Mavumengwana, Vuyo Bhongelethu
- Authors: Mavumengwana, Vuyo Bhongelethu
- Date: 2005
- Subjects: Aspergillus , Inulin , Chicory -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3954 , http://hdl.handle.net/10962/d1004013 , Aspergillus , Inulin , Chicory -- South Africa
- Description: Inulin is a non-digestible carbohydrate fructan polymer consisting mainly of β (1→2) fructosyl fructose links. Enzymatic hydrolysis of inulin by inulinase results in the production of low D.P (degree of polymerization) oligosaccharides also called fructooligosaccharides(FOS). Isolation of inulin from chicory root (Chicorium intybus) was achieved by first, extraction using deionized water (600C), followed by carbonation (0.1 M Ca(OH)2 and CO2 gas). This was filtered in order to remove the non sugars, thereafter, treated successfully with polyamide 6 powder. A cation exchanger and an anion exchanger were used to further exclude other components such as tannins and pigments. The extracted inulin was quantified using the Somogyi-Nelson colourimetric assay. Chicory root (207 g, 30 % being water) yielded 30 g of the raw extract. A 100 mg of the raw extract was assayed and found to contain 11 % yield of inulin which was 80.2 % in purity and 4 % free fructose. Analysis of the crude and purified inulin extracts on the MALDI TOF spectrometry showed the samples to have a DP of 2 to 22 and 2 to 27 respectively. Maximum inulinase production from Aspergillus niger grown on inulin was observed after 60 hours. The enzyme activity was found to be 1.168 U/ml with a temperature and pH optimum of 30 °C and 7.7 respectively. The enzyme proved to be unstable as it progressively lost its total activity during attempts at purification.
- Full Text:
- Date Issued: 2005
- Authors: Mavumengwana, Vuyo Bhongelethu
- Date: 2005
- Subjects: Aspergillus , Inulin , Chicory -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3954 , http://hdl.handle.net/10962/d1004013 , Aspergillus , Inulin , Chicory -- South Africa
- Description: Inulin is a non-digestible carbohydrate fructan polymer consisting mainly of β (1→2) fructosyl fructose links. Enzymatic hydrolysis of inulin by inulinase results in the production of low D.P (degree of polymerization) oligosaccharides also called fructooligosaccharides(FOS). Isolation of inulin from chicory root (Chicorium intybus) was achieved by first, extraction using deionized water (600C), followed by carbonation (0.1 M Ca(OH)2 and CO2 gas). This was filtered in order to remove the non sugars, thereafter, treated successfully with polyamide 6 powder. A cation exchanger and an anion exchanger were used to further exclude other components such as tannins and pigments. The extracted inulin was quantified using the Somogyi-Nelson colourimetric assay. Chicory root (207 g, 30 % being water) yielded 30 g of the raw extract. A 100 mg of the raw extract was assayed and found to contain 11 % yield of inulin which was 80.2 % in purity and 4 % free fructose. Analysis of the crude and purified inulin extracts on the MALDI TOF spectrometry showed the samples to have a DP of 2 to 22 and 2 to 27 respectively. Maximum inulinase production from Aspergillus niger grown on inulin was observed after 60 hours. The enzyme activity was found to be 1.168 U/ml with a temperature and pH optimum of 30 °C and 7.7 respectively. The enzyme proved to be unstable as it progressively lost its total activity during attempts at purification.
- Full Text:
- Date Issued: 2005
Puerulus and early juvenile recruitment of the rock lobster jasus lalandii in relation to the environment at Lüderitz Bay, Namibia
- Authors: Keulder, Felicia Juanita
- Date: 2005
- Subjects: Jasus lalandii , Lobster fisheries -- Namibia , Lobster culture -- Namibia
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5315 , http://hdl.handle.net/10962/d1005160 , Jasus lalandii , Lobster fisheries -- Namibia , Lobster culture -- Namibia
- Description: A global decline in the lobster fishery has necessitated the growout of wild-caught postlarvae (pueruli) on farms to meet the worlds lobster demand. A limited knowledge on puerulus settlement in the West Coast rock lobster (Jasus lalandii) constitutes a major barrier for J. lalandii culture development in Southern Africa. As an extension of an existing long-term puerulus monitoring program of the Ministry of Fisheries and Marine Resources of Namibia, the present study monitored puerulus recruitment (supply), puerulus condition and juvenile growth of J. lalandii and their relationship with environmental variables on an oyster farm at Lüderitz Bay, Namibia. Implications for lobster aquaculture and fisheries management are discussed. Oyster bags, crates and collectors were sampled daily, weekly and bimonthly, for pueruli and juveniles, respectively, between August 2001 and July 2003 to establish spatialtemporal patterns in their distribution. Animals were transported to the laboratory for morphometric analyses where they were staged as puerulus (Pt = transparent; Pp = pigmented) and juvenile lobsters. The carapace lengths (0.1mm CL) and wet weights (0.01gram) of animals were recorded. Carapace length frequencies were subjected to Modal Progression analysis to identify early juvenile cohorts and calculate their growths. The weight-length ratios calculated and percentage fat content were used as indices of nutritional condition. Seasonal peaks in puerulus and juvenile abundance were estimated using Periodic Regression analysis. The relationships of puerulus and juvenile abundance with respect to sea surface temperature (SST), wind speed-direction, moon phase, swell and tidal range were established using time lag analysis (ADL). Transparent pueruli were randomly distributed on oyster bags and crates, and also between collector sites, suggesting that they have no particular settlement preference for certain areas on these structures (p>0.05; n=150). Pigmented puerulus (p<0.05; n=566) and juveniles (p<0.05; n=3528) preferred structurally complex structures that provided better shelter such as crates, which were more sheltered from sea swells, compared to oyster bags. Among oyster rafts, pigmented puerulus and juveniles preferred occupying the sheltered and centred raft areas, which provided better protection from wave action, compared to exposed raft areas, which were exposed to the incoming swell. Puerulus and juvenile lobster appeared to recolonise adjacent bags and crates, and possibly migrate to the substrate and off the farm due to the disturbance of the habitat during harvesting. The booth crevice collector was more efficient in collecting puerulus possibly due to the high structurally complex habitat and the better shelter they provided compared to the hogshair collector. The occupation of structurally complex habitats by early benthic stages may be related to morphological changes associated with metamorphosis. Puerulus settlement peaked during early spring (August-September) and was related to low sea surface temperatures (12.3°C), strong south winds, and moderate swells in the week preceding settlement. These conditions are synonymous with the “spring upwelling” season of the Lüderitz upwelling cell in the central Benguela current region. Puerulus nutritional condition peaked during this period possibly due to high levels of planktonic food (due to high nutrients from upwelling) that was available to the late stage phyllosoma larvae further offshore. A “good” puerulus settlement year during 2000 was associated with lower than average SST (11.6°C) and strong south winds and was followed by “poor” puerulus settlement years during 2001 and 2002 when higher than average SST were experienced with below average wind speeds experienced during 2001 only. Puerulus of J. lalandii recruited in high numbers into Lüderitz Bay during the new moon, full moon and last quarter moon phases by making use of the increased tides during these phases of the lunar cycle. Peak juvenile abundance during early summer (November-December) lagged by 8 weeks was significantly correlated with peak puerulus abundance. Puerulus size was similar (8.5–9.7mm CL) over the study period. Juvenile cohorts, 9.9-20.6mm CL in size recruited in 2 distinct waves in August 2001-June 2002 and July 2002-February 2003. The 2001/2002 recruits had higher monthly growth increments and better nutritional condition compared to 2002/2003 recruits. Peak frequencies of 2nd moult juveniles (9.9- 10.8mm CL) occurred in September of both recruitment events with nutritional condition being poorest during the 2002/2003 event. The nutritional condition of the settling puerulus did not appear to be related to the subsequent growth of juvenile lobster. These preliminary results suggest that pueruli recruit once a year mainly during late winter/ early spring under conditions typical of coastal upwelling in the Benguela current near Lüderitz. It appears that puerulus settlement is driven by favourable shoreward currents, which help in transporting puerulus to their settlement grounds. Puerulus supply is highly variable between years, which appears to be consistent with a highly variable Benguela environment. The oyster farm supported a substantial standing stock averaging 123 800 lobster per day (range: 22 600-325 300 lobster per day) of which 26 600 were puerulus and 97 200 were juveniles, that may have been harvested once off on any given day during the sample period. Monthly harvesting of the total lobster standing stock during the one and a half year sampling period was just over 2 million lobsters (505 700 pueruli and 1.85 million juveniles) and would potentially have been sufficient seed for a 200 ton lobster production in puerulus lobster growout facilities. In the light of high inter-annual variation in puerulus settlement observed at Lüderitz, the seed supply at the Lüderitz oyster farm is clearly limited and therefore it is prudent that other sites of high puerulus settlement is established before large commercial scale lobster growout can commence. The migration of lobster off the farm suggested that these lobsters potentially recruit to the fishery and therefore harvesting the entire standing stock on the farm may have adverse negative effects on the wild fishery. A policy decision will be required as to whether more efficient harvesting of lobster from the farm should be allowed. If puerulus removal in J. lalandii for aquaculture is allowed in the near future, it should be conducted on an experimental scale or small commercial scale until the potential effects on recruitment into the fishery are clearer.
- Full Text:
- Date Issued: 2005
- Authors: Keulder, Felicia Juanita
- Date: 2005
- Subjects: Jasus lalandii , Lobster fisheries -- Namibia , Lobster culture -- Namibia
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5315 , http://hdl.handle.net/10962/d1005160 , Jasus lalandii , Lobster fisheries -- Namibia , Lobster culture -- Namibia
- Description: A global decline in the lobster fishery has necessitated the growout of wild-caught postlarvae (pueruli) on farms to meet the worlds lobster demand. A limited knowledge on puerulus settlement in the West Coast rock lobster (Jasus lalandii) constitutes a major barrier for J. lalandii culture development in Southern Africa. As an extension of an existing long-term puerulus monitoring program of the Ministry of Fisheries and Marine Resources of Namibia, the present study monitored puerulus recruitment (supply), puerulus condition and juvenile growth of J. lalandii and their relationship with environmental variables on an oyster farm at Lüderitz Bay, Namibia. Implications for lobster aquaculture and fisheries management are discussed. Oyster bags, crates and collectors were sampled daily, weekly and bimonthly, for pueruli and juveniles, respectively, between August 2001 and July 2003 to establish spatialtemporal patterns in their distribution. Animals were transported to the laboratory for morphometric analyses where they were staged as puerulus (Pt = transparent; Pp = pigmented) and juvenile lobsters. The carapace lengths (0.1mm CL) and wet weights (0.01gram) of animals were recorded. Carapace length frequencies were subjected to Modal Progression analysis to identify early juvenile cohorts and calculate their growths. The weight-length ratios calculated and percentage fat content were used as indices of nutritional condition. Seasonal peaks in puerulus and juvenile abundance were estimated using Periodic Regression analysis. The relationships of puerulus and juvenile abundance with respect to sea surface temperature (SST), wind speed-direction, moon phase, swell and tidal range were established using time lag analysis (ADL). Transparent pueruli were randomly distributed on oyster bags and crates, and also between collector sites, suggesting that they have no particular settlement preference for certain areas on these structures (p>0.05; n=150). Pigmented puerulus (p<0.05; n=566) and juveniles (p<0.05; n=3528) preferred structurally complex structures that provided better shelter such as crates, which were more sheltered from sea swells, compared to oyster bags. Among oyster rafts, pigmented puerulus and juveniles preferred occupying the sheltered and centred raft areas, which provided better protection from wave action, compared to exposed raft areas, which were exposed to the incoming swell. Puerulus and juvenile lobster appeared to recolonise adjacent bags and crates, and possibly migrate to the substrate and off the farm due to the disturbance of the habitat during harvesting. The booth crevice collector was more efficient in collecting puerulus possibly due to the high structurally complex habitat and the better shelter they provided compared to the hogshair collector. The occupation of structurally complex habitats by early benthic stages may be related to morphological changes associated with metamorphosis. Puerulus settlement peaked during early spring (August-September) and was related to low sea surface temperatures (12.3°C), strong south winds, and moderate swells in the week preceding settlement. These conditions are synonymous with the “spring upwelling” season of the Lüderitz upwelling cell in the central Benguela current region. Puerulus nutritional condition peaked during this period possibly due to high levels of planktonic food (due to high nutrients from upwelling) that was available to the late stage phyllosoma larvae further offshore. A “good” puerulus settlement year during 2000 was associated with lower than average SST (11.6°C) and strong south winds and was followed by “poor” puerulus settlement years during 2001 and 2002 when higher than average SST were experienced with below average wind speeds experienced during 2001 only. Puerulus of J. lalandii recruited in high numbers into Lüderitz Bay during the new moon, full moon and last quarter moon phases by making use of the increased tides during these phases of the lunar cycle. Peak juvenile abundance during early summer (November-December) lagged by 8 weeks was significantly correlated with peak puerulus abundance. Puerulus size was similar (8.5–9.7mm CL) over the study period. Juvenile cohorts, 9.9-20.6mm CL in size recruited in 2 distinct waves in August 2001-June 2002 and July 2002-February 2003. The 2001/2002 recruits had higher monthly growth increments and better nutritional condition compared to 2002/2003 recruits. Peak frequencies of 2nd moult juveniles (9.9- 10.8mm CL) occurred in September of both recruitment events with nutritional condition being poorest during the 2002/2003 event. The nutritional condition of the settling puerulus did not appear to be related to the subsequent growth of juvenile lobster. These preliminary results suggest that pueruli recruit once a year mainly during late winter/ early spring under conditions typical of coastal upwelling in the Benguela current near Lüderitz. It appears that puerulus settlement is driven by favourable shoreward currents, which help in transporting puerulus to their settlement grounds. Puerulus supply is highly variable between years, which appears to be consistent with a highly variable Benguela environment. The oyster farm supported a substantial standing stock averaging 123 800 lobster per day (range: 22 600-325 300 lobster per day) of which 26 600 were puerulus and 97 200 were juveniles, that may have been harvested once off on any given day during the sample period. Monthly harvesting of the total lobster standing stock during the one and a half year sampling period was just over 2 million lobsters (505 700 pueruli and 1.85 million juveniles) and would potentially have been sufficient seed for a 200 ton lobster production in puerulus lobster growout facilities. In the light of high inter-annual variation in puerulus settlement observed at Lüderitz, the seed supply at the Lüderitz oyster farm is clearly limited and therefore it is prudent that other sites of high puerulus settlement is established before large commercial scale lobster growout can commence. The migration of lobster off the farm suggested that these lobsters potentially recruit to the fishery and therefore harvesting the entire standing stock on the farm may have adverse negative effects on the wild fishery. A policy decision will be required as to whether more efficient harvesting of lobster from the farm should be allowed. If puerulus removal in J. lalandii for aquaculture is allowed in the near future, it should be conducted on an experimental scale or small commercial scale until the potential effects on recruitment into the fishery are clearer.
- Full Text:
- Date Issued: 2005
The biology of suburban olive thrushes (Turdus olivaceus olivaceus) in the Eastern Cape, South Africa
- Authors: Bonnevie, Bo Tørris
- Date: 2005
- Subjects: Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5651 , http://hdl.handle.net/10962/d1005333 , Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Description: This study investigated the biology of the Olive Thrush Turdus olivaceus olivaceus in Grahamstown, South Africa from 1998 to 2003. Behavioural differences between males and females, parent-young interactions, development of fledglings, and the role of song and moult in territorial behaviour were investigated. Comparisons of biometrics, moult and survival were made using Olive Thrush ringing data from other regions. There were no significant differences in mass, wing length or survival rate between the Eastern and Western Cape provinces, but primary wing moult started earlier in the Western Cape and coincided with the end of the main breeding periods in both provinces. Both males and females of breeding pairs remained in and defended their territories throughout the year, but there was some evidence that territorial defence was strongest during the breeding periods. Roughly, every 100 eggs laid produce 50 fledglings. Out of these 20 to 30 reach the age of independence at approximately 50 days, and only five of these juvenile birds reach maturity. Adult survival was estimated at 80%, with a mean life expectancy of 4.5 years and a conservative estimate of maximum lifespan of 11 years. Using ringing data and museum specimens, the Olive Thrush was compared with the Karoo Thrush Turdus smithi, a former race of the Olive Thrush. Olive Thrushes had shorter bills and wings, but were heavier than Karoo Thrushes from the Cradock district. There were also differences in bill and eye-ring colouration between these populations. No morphological differences were found between the sexes in either species.
- Full Text:
- Date Issued: 2005
- Authors: Bonnevie, Bo Tørris
- Date: 2005
- Subjects: Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5651 , http://hdl.handle.net/10962/d1005333 , Thrushes , Turdus , Thrushes -- South Africa -- Eastern Cape , Turdus -- South Africa -- Eastern Cape
- Description: This study investigated the biology of the Olive Thrush Turdus olivaceus olivaceus in Grahamstown, South Africa from 1998 to 2003. Behavioural differences between males and females, parent-young interactions, development of fledglings, and the role of song and moult in territorial behaviour were investigated. Comparisons of biometrics, moult and survival were made using Olive Thrush ringing data from other regions. There were no significant differences in mass, wing length or survival rate between the Eastern and Western Cape provinces, but primary wing moult started earlier in the Western Cape and coincided with the end of the main breeding periods in both provinces. Both males and females of breeding pairs remained in and defended their territories throughout the year, but there was some evidence that territorial defence was strongest during the breeding periods. Roughly, every 100 eggs laid produce 50 fledglings. Out of these 20 to 30 reach the age of independence at approximately 50 days, and only five of these juvenile birds reach maturity. Adult survival was estimated at 80%, with a mean life expectancy of 4.5 years and a conservative estimate of maximum lifespan of 11 years. Using ringing data and museum specimens, the Olive Thrush was compared with the Karoo Thrush Turdus smithi, a former race of the Olive Thrush. Olive Thrushes had shorter bills and wings, but were heavier than Karoo Thrushes from the Cradock district. There were also differences in bill and eye-ring colouration between these populations. No morphological differences were found between the sexes in either species.
- Full Text:
- Date Issued: 2005
The development of the emerging technologies sustainability assessment (ETSA) and its application in the design of a bioprocess for the treatment of wine distillery effluent
- Authors: Khan, Nuraan
- Date: 2005
- Subjects: Technology assessment , Wine and wine making -- Waste disposal , Distilleries -- Waste disposal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3953 , http://hdl.handle.net/10962/d1004012 , Technology assessment , Wine and wine making -- Waste disposal , Distilleries -- Waste disposal
- Description: Emerging Technologies Sustainability Assessment (ETSA) is a new technology assessment tool that was developed in order to compare emerging processes or technologies to existing alternatives. It utilizes infoIDlation modules, with the minimum use of resources such as time and money, in order to deteIDline if the process under development is comparatively favourable and should be developed beyond the early conceptual phase. The preliminary ETSA is vital in order to identify the gaps in the existing information and the specific methodologies to be used for data capture and analysis. The use of experimental design tools, such as Design-Expert, can facilitate rapid and efficient collection of necessary data and fits in well with the rationale for the ETSA. Wine distillery effluent (vinasse) is the residue left after alcohol has been distilled from fennented grape juice. It is an acidic, darkly coloured effluent, with a high COD and polyphenol content. The most popular method of disposal of this effluent, land application, is no longer viable due to stricter legislation and pressure on the industry to better manage its wastes. Although the ability of whiterot fungi to degrade a number of pollutants is well-known, fungal treatment of wine distillery effluent is still in the conceptual phase. The perfoIDlance of the fungal remediation system was assessed experimentally in terms of COD removal and laccase production using Design-Expert. Although Pycnoporus sanguine us was found to be most efficient at COD removal (85%) from 30% vinasse, laccase production was low (0.021 U/I). The optimum design for economically viable fungal treatment used Trametespubescens. This fungus was able to remove over 50% of the COD from undiluted vinasse while producing almost 800U/l of the valuable laccase enzyme within three days. Since the effluent from the fungal system did not meet the legal limits for wastewater disposal, a two-stage aerobicanaerobic system is suggested to improve the quality of the effluent prior to disposal. The ETSA was used to assess the fungal technology in relation to the two current methods of vinasse treatment and disposal, namely land application and anaerobic digestion. Based on the ETSA, which considered environmental, social and economic impacts, the fungal system proved to be potentially competitive and further development of the technology is suggested.
- Full Text:
- Date Issued: 2005
- Authors: Khan, Nuraan
- Date: 2005
- Subjects: Technology assessment , Wine and wine making -- Waste disposal , Distilleries -- Waste disposal
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3953 , http://hdl.handle.net/10962/d1004012 , Technology assessment , Wine and wine making -- Waste disposal , Distilleries -- Waste disposal
- Description: Emerging Technologies Sustainability Assessment (ETSA) is a new technology assessment tool that was developed in order to compare emerging processes or technologies to existing alternatives. It utilizes infoIDlation modules, with the minimum use of resources such as time and money, in order to deteIDline if the process under development is comparatively favourable and should be developed beyond the early conceptual phase. The preliminary ETSA is vital in order to identify the gaps in the existing information and the specific methodologies to be used for data capture and analysis. The use of experimental design tools, such as Design-Expert, can facilitate rapid and efficient collection of necessary data and fits in well with the rationale for the ETSA. Wine distillery effluent (vinasse) is the residue left after alcohol has been distilled from fennented grape juice. It is an acidic, darkly coloured effluent, with a high COD and polyphenol content. The most popular method of disposal of this effluent, land application, is no longer viable due to stricter legislation and pressure on the industry to better manage its wastes. Although the ability of whiterot fungi to degrade a number of pollutants is well-known, fungal treatment of wine distillery effluent is still in the conceptual phase. The perfoIDlance of the fungal remediation system was assessed experimentally in terms of COD removal and laccase production using Design-Expert. Although Pycnoporus sanguine us was found to be most efficient at COD removal (85%) from 30% vinasse, laccase production was low (0.021 U/I). The optimum design for economically viable fungal treatment used Trametespubescens. This fungus was able to remove over 50% of the COD from undiluted vinasse while producing almost 800U/l of the valuable laccase enzyme within three days. Since the effluent from the fungal system did not meet the legal limits for wastewater disposal, a two-stage aerobicanaerobic system is suggested to improve the quality of the effluent prior to disposal. The ETSA was used to assess the fungal technology in relation to the two current methods of vinasse treatment and disposal, namely land application and anaerobic digestion. Based on the ETSA, which considered environmental, social and economic impacts, the fungal system proved to be potentially competitive and further development of the technology is suggested.
- Full Text:
- Date Issued: 2005
A study of plocamium corallorhiza secondary metabolites and their biological activity
- Authors: Mkwananzi, Henry Bayanda
- Date: 2005
- Subjects: Natural products -- Therapeutic use , Marine metabolites -- Therapeutic use , Marine pharmacology , Marine algae , Monoterpenes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3841 , http://hdl.handle.net/10962/d1007666 , Natural products -- Therapeutic use , Marine metabolites -- Therapeutic use , Marine pharmacology , Marine algae , Monoterpenes
- Description: Seaweeds of the genus Plocamium are known to produce a variety of halogenated monoterpenes. In addition to their ecological role as feeding deterrents, biological activities reported for these compounds include antibacterial, antialgal, antifungal and anticancer activities. An investigation of the non-polar extracts of the seaweed Plocamium corallorhiza resulted in the isolation of six known halogenated monoterpene compounds, 4-bromo-5-bromomethyl-1-chlorovinyl-2, 5-dichloro-methylcyclohexane (2.68), 1,4,8-tribromo-3 ,7-dichloro-3, 7-dimethyl-1,5-octadiene (2.67), 8-bromo-1 ,3,4,7-tetrachloro-3, 7-dimethyl-1,5-octadiene (2.66), 4,6-dibromo-1,1-dichloro-3,7-dimethyl-2,7-octadiene (2.64), 4,8-dibromo-1,1,7-trichloro-3,7-dimethyl-2,5-octadiene (2.65) and 3,4 ,6,7-tetrachloro-3, 7-dimethyl-1-octene (2.63) as well as eight new compounds, including five halogenated monoterpene aldehydes. The new compounds were identified by 1D and 2D NMR spectroscopic techniques as: 8-Bromo-6,7-dichloro-3,7-dimethyl-octa-2,4-dienal (2.72), 8-Bromo-1,1,2,7-tetrachloro-3,7-dimethyl-octa-3,5-diene (2.70), 4,8-Dichloro-3,7-dimethyl-octa-2,4,6-trienal (2.74), 4-Bromo-8-chloro-3, 7-di methyl-octa-2, 6-dienal (2 76), 8-Bromo-4-chloro-3, 7-dimethyl-octa-2,4 ,6-trienaI (2.75), 4-Bromo-1,3,6,7-tetrachloro-3 ,7-dimethyl-octa-1,4-diene (2.71), 8-Bromo-1,3,4,7-tetrachloro-3,7-dimethyl-octa-1,5-diene (2.69), 4,6-Dibromo-3,7 -dimethyl-octa-2,7-dienal (2.73). All compounds were screened for antimicrobial activity, brine shrimp lethality and cytotoxicity towards oesophageal cancer cells. Compound 2.68 was toxic to brine shrimp larvae at a concentration of 50 μ/mL. It also showed promising activity towards oesophageal cancer cells with an IC₅₀, of 2 μg/mL.
- Full Text:
- Date Issued: 2005
- Authors: Mkwananzi, Henry Bayanda
- Date: 2005
- Subjects: Natural products -- Therapeutic use , Marine metabolites -- Therapeutic use , Marine pharmacology , Marine algae , Monoterpenes
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3841 , http://hdl.handle.net/10962/d1007666 , Natural products -- Therapeutic use , Marine metabolites -- Therapeutic use , Marine pharmacology , Marine algae , Monoterpenes
- Description: Seaweeds of the genus Plocamium are known to produce a variety of halogenated monoterpenes. In addition to their ecological role as feeding deterrents, biological activities reported for these compounds include antibacterial, antialgal, antifungal and anticancer activities. An investigation of the non-polar extracts of the seaweed Plocamium corallorhiza resulted in the isolation of six known halogenated monoterpene compounds, 4-bromo-5-bromomethyl-1-chlorovinyl-2, 5-dichloro-methylcyclohexane (2.68), 1,4,8-tribromo-3 ,7-dichloro-3, 7-dimethyl-1,5-octadiene (2.67), 8-bromo-1 ,3,4,7-tetrachloro-3, 7-dimethyl-1,5-octadiene (2.66), 4,6-dibromo-1,1-dichloro-3,7-dimethyl-2,7-octadiene (2.64), 4,8-dibromo-1,1,7-trichloro-3,7-dimethyl-2,5-octadiene (2.65) and 3,4 ,6,7-tetrachloro-3, 7-dimethyl-1-octene (2.63) as well as eight new compounds, including five halogenated monoterpene aldehydes. The new compounds were identified by 1D and 2D NMR spectroscopic techniques as: 8-Bromo-6,7-dichloro-3,7-dimethyl-octa-2,4-dienal (2.72), 8-Bromo-1,1,2,7-tetrachloro-3,7-dimethyl-octa-3,5-diene (2.70), 4,8-Dichloro-3,7-dimethyl-octa-2,4,6-trienal (2.74), 4-Bromo-8-chloro-3, 7-di methyl-octa-2, 6-dienal (2 76), 8-Bromo-4-chloro-3, 7-dimethyl-octa-2,4 ,6-trienaI (2.75), 4-Bromo-1,3,6,7-tetrachloro-3 ,7-dimethyl-octa-1,4-diene (2.71), 8-Bromo-1,3,4,7-tetrachloro-3,7-dimethyl-octa-1,5-diene (2.69), 4,6-Dibromo-3,7 -dimethyl-octa-2,7-dienal (2.73). All compounds were screened for antimicrobial activity, brine shrimp lethality and cytotoxicity towards oesophageal cancer cells. Compound 2.68 was toxic to brine shrimp larvae at a concentration of 50 μ/mL. It also showed promising activity towards oesophageal cancer cells with an IC₅₀, of 2 μg/mL.
- Full Text:
- Date Issued: 2005
An assessment of the shore baitfishery in the Eastern Cape
- Authors: Mackenzie, Bernard Louis
- Date: 2005
- Subjects: Fishing baits -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Fisheries -- South Africa -- Eastern Cape , Fishery -- Law and legislation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5232 , http://hdl.handle.net/10962/d1005075 , Fishing baits -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Fisheries -- South Africa -- Eastern Cape , Fishery -- Law and legislation -- South Africa
- Description: The collection of bait organisms goes hand-in-hand with shore-angling in South Africa, hence the level of bait-collection can be used as an indicator of fishing effort and vice versa. This emphasises the importance of understanding the fisheries for bait organisms. In 1998 the South African fisheries policy was revised, culminating in the Marine Living Resources Act No. 18 (1998) which supported sustainable development, equitable access to resources and stability of the industry. The policy also dealt with the needs of subsistence fishers who had previously been all but ignored. This study looks to continue in this direction by investigating the opportunities for the establishment and management implications of small-scale commercial baitfisheries in the Eastern Cape. Data were collected from eight clearly demarcated sampling areas using the roving survey method. A total of 97 survey trips were undertaken between September 2001 and April 2003 and 469 interviews were conducted on individual anglers. The data was analysed and discussed on the basis of three wider study regions and this allowed for a more accurate and focussed assessment of the fishery area and the potential for its formalisation. Recreational fishers (91.5%) dominated in each of the three regions surveyed. The low number of subsistence fishers encountered in this study is not a standard pattern throughout South Africa. The dominance of local residents in the shore-fishery could have an important impact on the success of a formalised baitfishery in that the greater proportion of the potential market is accessible throughout the year. Most recreational shore-anglers were middle-aged (43.8 years ± 12.9 years), and hence at the peak of their earning years and this may contribute towards the potential success of a small-scale commercial baitfishery. Most anglers and baitfishers were of the opinion that all South Africans owned and were responsible for managing the living marine resources. The vast majority of recreational users paid for and were in possession of valid permits and approved of the baitfishery regulations. This implies that the greater majority of users recognise that the state is the rightful custodian of the resource and is responsible for management. No subsistence users were in possession of permits. Resource users in the Gamtoos to Tsitsikamma National Park region, where the inspection rate was highest, had the best knowledge of the regulations regarding both baitfishing (67.2% ± 38.8%) and angling (79.8 ± 21.4%). This substantiates the hypothesis that there is a direct correlation between knowledge of the regulations and the rate of inspection. About 475 000 angler-days/year were fished in the study area, with the highest number of angler-days recorded in or near urban and peri-urban areas. Bronze bream (65.9%) and dusky kob (61.1%) were the two most commonly targeted species, followed by white steenbras (31.7%), white musselcracker (31.4%) and blacktail (20.2%). A total of four purchased and 19 collected bait species was recorded during the study. Sardine, chokka and pink prawn were the most frequently encountered purchased bait. Red bait, sand prawn, mullet, siffie, sand mussel, bloodworm and saddleback were the most frequently encountered collected bait species. Sand prawn was identified as the preferred bait species for a wide range of angling species. The total quantity of bait organisms used per fishing trip was markedly less than the total amount collected per trip. The ban of off-road vehicles (ORV's) from beaches (20 January 2002) resulted in spatial shifts in angler effort in certain areas, suggesting that total effort has reduced in areas where ORV's were commonly used. Subsequent to the ban, fishers were encountered, on average, much closer to access points. The value of small-scale baitfisheries within the total study area was estimated at about R7 million per year. Across the entire study area red bait was identified as the most valuable bait in the rock-and-surf fishery in monetary terms, while sand prawn was also important. The findings led to the conclusion that small-scale commercial baitfisheries in the study area are potentially viable. Scenarios for the establishment of baitfisheries are suggested and discussed.
- Full Text:
- Date Issued: 2005
- Authors: Mackenzie, Bernard Louis
- Date: 2005
- Subjects: Fishing baits -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Fisheries -- South Africa -- Eastern Cape , Fishery -- Law and legislation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5232 , http://hdl.handle.net/10962/d1005075 , Fishing baits -- South Africa -- Eastern Cape , Fishery management -- South Africa -- Eastern Cape , Fisheries -- South Africa -- Eastern Cape , Fishery -- Law and legislation -- South Africa
- Description: The collection of bait organisms goes hand-in-hand with shore-angling in South Africa, hence the level of bait-collection can be used as an indicator of fishing effort and vice versa. This emphasises the importance of understanding the fisheries for bait organisms. In 1998 the South African fisheries policy was revised, culminating in the Marine Living Resources Act No. 18 (1998) which supported sustainable development, equitable access to resources and stability of the industry. The policy also dealt with the needs of subsistence fishers who had previously been all but ignored. This study looks to continue in this direction by investigating the opportunities for the establishment and management implications of small-scale commercial baitfisheries in the Eastern Cape. Data were collected from eight clearly demarcated sampling areas using the roving survey method. A total of 97 survey trips were undertaken between September 2001 and April 2003 and 469 interviews were conducted on individual anglers. The data was analysed and discussed on the basis of three wider study regions and this allowed for a more accurate and focussed assessment of the fishery area and the potential for its formalisation. Recreational fishers (91.5%) dominated in each of the three regions surveyed. The low number of subsistence fishers encountered in this study is not a standard pattern throughout South Africa. The dominance of local residents in the shore-fishery could have an important impact on the success of a formalised baitfishery in that the greater proportion of the potential market is accessible throughout the year. Most recreational shore-anglers were middle-aged (43.8 years ± 12.9 years), and hence at the peak of their earning years and this may contribute towards the potential success of a small-scale commercial baitfishery. Most anglers and baitfishers were of the opinion that all South Africans owned and were responsible for managing the living marine resources. The vast majority of recreational users paid for and were in possession of valid permits and approved of the baitfishery regulations. This implies that the greater majority of users recognise that the state is the rightful custodian of the resource and is responsible for management. No subsistence users were in possession of permits. Resource users in the Gamtoos to Tsitsikamma National Park region, where the inspection rate was highest, had the best knowledge of the regulations regarding both baitfishing (67.2% ± 38.8%) and angling (79.8 ± 21.4%). This substantiates the hypothesis that there is a direct correlation between knowledge of the regulations and the rate of inspection. About 475 000 angler-days/year were fished in the study area, with the highest number of angler-days recorded in or near urban and peri-urban areas. Bronze bream (65.9%) and dusky kob (61.1%) were the two most commonly targeted species, followed by white steenbras (31.7%), white musselcracker (31.4%) and blacktail (20.2%). A total of four purchased and 19 collected bait species was recorded during the study. Sardine, chokka and pink prawn were the most frequently encountered purchased bait. Red bait, sand prawn, mullet, siffie, sand mussel, bloodworm and saddleback were the most frequently encountered collected bait species. Sand prawn was identified as the preferred bait species for a wide range of angling species. The total quantity of bait organisms used per fishing trip was markedly less than the total amount collected per trip. The ban of off-road vehicles (ORV's) from beaches (20 January 2002) resulted in spatial shifts in angler effort in certain areas, suggesting that total effort has reduced in areas where ORV's were commonly used. Subsequent to the ban, fishers were encountered, on average, much closer to access points. The value of small-scale baitfisheries within the total study area was estimated at about R7 million per year. Across the entire study area red bait was identified as the most valuable bait in the rock-and-surf fishery in monetary terms, while sand prawn was also important. The findings led to the conclusion that small-scale commercial baitfisheries in the study area are potentially viable. Scenarios for the establishment of baitfisheries are suggested and discussed.
- Full Text:
- Date Issued: 2005
Coastal dune dynamics and management at the Bushman's River mouth, Kenton-on-Sea
- Authors: Fraser, Claire
- Date: 2005
- Subjects: Sand dunes -- South Africa -- Management , Sand dune ecology -- South Africa -- Kenton-on-Sea , Coastal ecology -- South Africa -- Kenton-on-Sea , Coastal zone management -- South Africa -- Kenton-on-Sea
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4192 , http://hdl.handle.net/10962/d1003761 , Sand dunes -- South Africa -- Management , Sand dune ecology -- South Africa -- Kenton-on-Sea , Coastal ecology -- South Africa -- Kenton-on-Sea , Coastal zone management -- South Africa -- Kenton-on-Sea
- Description: A study of the dynamics and functions of a coastal dunefield at the Bushman’s River Mouth in Kenton-on-Sea was conducted to provide essential information for the formulation of a management strategy based on an ecosystem approach. Bi-monthly tacheometric surveys were undertaken at the Westbourne Road Car Park dunefield to investigate the sedimentological processes. Changes in the topography, the amount and rate of sand accretion were monitored. Accretion and progradation were the dominant long-term sedimentological processes at the site. Long-term spatial variation in these processes corresponded to the temporal pattern of sedimentation in the river mouth while short-term variation resulted from dynamics inherent to the types of dunes present. Factors affecting aeolian accretion at the site are topography, river mouth configuration, dune types and the presence of vegetation as well as the seasonal wind regime. A vegetation study, recording species present, cover and abundance of the plants along the surveyed transects, was also conducted to examine the progressive establishment of vegetation. Five plant communities were discerned namely, saltmarsh, pioneer, enriched pioneer, open scrub, closed scrub and scrub-thicket communities. The spatial distribution of these communities coincided with the north-westerly development of the sandbank. A successional trend in community change occurred along a gradient of increasing diversity, complexity and age. Initially, autogenic changes wrought by pioneer species facilitated the recruitment and survival of other species and commenced succession at the study site. Multiple successional pathways were discussed in relation to subsequent species establishment that occurred after facilitation. The amalgamation of ecological data with a social study in the form of public perception surveys allowed for a greater understanding of the present interactions between the ecosystem and the demands placed on it. The area primarily functions as a recreational site that offered numerous beach and water-related activities. A lack of information regarding the ecology and management programmes influenced public perception of the environment and management issues in general. Different management perspectives and the use of the information presented in this study were also discussed.
- Full Text:
- Date Issued: 2005
- Authors: Fraser, Claire
- Date: 2005
- Subjects: Sand dunes -- South Africa -- Management , Sand dune ecology -- South Africa -- Kenton-on-Sea , Coastal ecology -- South Africa -- Kenton-on-Sea , Coastal zone management -- South Africa -- Kenton-on-Sea
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4192 , http://hdl.handle.net/10962/d1003761 , Sand dunes -- South Africa -- Management , Sand dune ecology -- South Africa -- Kenton-on-Sea , Coastal ecology -- South Africa -- Kenton-on-Sea , Coastal zone management -- South Africa -- Kenton-on-Sea
- Description: A study of the dynamics and functions of a coastal dunefield at the Bushman’s River Mouth in Kenton-on-Sea was conducted to provide essential information for the formulation of a management strategy based on an ecosystem approach. Bi-monthly tacheometric surveys were undertaken at the Westbourne Road Car Park dunefield to investigate the sedimentological processes. Changes in the topography, the amount and rate of sand accretion were monitored. Accretion and progradation were the dominant long-term sedimentological processes at the site. Long-term spatial variation in these processes corresponded to the temporal pattern of sedimentation in the river mouth while short-term variation resulted from dynamics inherent to the types of dunes present. Factors affecting aeolian accretion at the site are topography, river mouth configuration, dune types and the presence of vegetation as well as the seasonal wind regime. A vegetation study, recording species present, cover and abundance of the plants along the surveyed transects, was also conducted to examine the progressive establishment of vegetation. Five plant communities were discerned namely, saltmarsh, pioneer, enriched pioneer, open scrub, closed scrub and scrub-thicket communities. The spatial distribution of these communities coincided with the north-westerly development of the sandbank. A successional trend in community change occurred along a gradient of increasing diversity, complexity and age. Initially, autogenic changes wrought by pioneer species facilitated the recruitment and survival of other species and commenced succession at the study site. Multiple successional pathways were discussed in relation to subsequent species establishment that occurred after facilitation. The amalgamation of ecological data with a social study in the form of public perception surveys allowed for a greater understanding of the present interactions between the ecosystem and the demands placed on it. The area primarily functions as a recreational site that offered numerous beach and water-related activities. A lack of information regarding the ecology and management programmes influenced public perception of the environment and management issues in general. Different management perspectives and the use of the information presented in this study were also discussed.
- Full Text:
- Date Issued: 2005
The effects of the invasive mussel mytilus galloprovincialis and human exploitation on the indigenous mussel Perna perna on the South Coast of South Africa
- Authors: Rius Viladomiu, Marc
- Date: 2005
- Subjects: Mussels -- South Africa , Perna -- South Africa , Mytilus galloprovincialis -- South Africa , Mytilidae -- South Africa , Biological invasions , Marine resources conservation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5684 , http://hdl.handle.net/10962/d1005370 , Mussels -- South Africa , Perna -- South Africa , Mytilus galloprovincialis -- South Africa , Mytilidae -- South Africa , Biological invasions , Marine resources conservation -- South Africa
- Description: In South Africa, the indigenous mussel Perna perna is threatened by both an invasive species and excessive human exploitation. The Mediterranean mussel Mytilus galloprovincialis is an invasive species that has been introduced to many parts of the world. In South Africa, this species arrived in the 1970s and spread rapidly along the west coast where today it is the dominant mussel species. Along the west coast, M. galloprovincialis is competitively superior in all aspects to the indigenous mussel species, and, as a result, has displaced some of them. On the south coast, M. galloprovincialis found more oligotrophic waters, higher species richness, and a stronger competitor in the indigenous mussel P. perna. The rate of spread of M. galloprovincialis along the south coast has decreased over the last 10 years and the present eastern limit of its distribution in South African is East London. On the south coast, M. galloprovincialis has not yet completely replaced P. perna; instead, the two exhibit spatial segregation, with P. perna dominating the low shore, M. galloprovincialis the high shore and an overlap zone between the two. An experiment on competition was carried out at one site on the south coast. The results showed that, on the low shore, P. perna is a more dominant competitor for space than M. galloprovincialis. Also byssus attachment of the two species differs, P. perna being much stronger than M. galloprovincialis, which suffers high mortality due to wave action on the low shore, especially in monospecific beds. As a result, mortality of M. galloprovincialis through wave action is reduced by the presence of P. perna, which seems to confer protection against dislodgement. However, in the absence of strong wave action, P. perna competitively excludes M. galloprovincialis. Human exploitation along 160 km of coast was examined by sampling mussel populations and using aerial surveys to determine where harvesters were distributed. Collectors did not seem to discriminate between species. The study has shown that higher abundances of mussels were found in protected or inaccessible sites, while in unprotected sites mussels were scarce. Coastal nature reserves are being proven to be effective in protecting mussel populations.
- Full Text:
- Date Issued: 2005
- Authors: Rius Viladomiu, Marc
- Date: 2005
- Subjects: Mussels -- South Africa , Perna -- South Africa , Mytilus galloprovincialis -- South Africa , Mytilidae -- South Africa , Biological invasions , Marine resources conservation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5684 , http://hdl.handle.net/10962/d1005370 , Mussels -- South Africa , Perna -- South Africa , Mytilus galloprovincialis -- South Africa , Mytilidae -- South Africa , Biological invasions , Marine resources conservation -- South Africa
- Description: In South Africa, the indigenous mussel Perna perna is threatened by both an invasive species and excessive human exploitation. The Mediterranean mussel Mytilus galloprovincialis is an invasive species that has been introduced to many parts of the world. In South Africa, this species arrived in the 1970s and spread rapidly along the west coast where today it is the dominant mussel species. Along the west coast, M. galloprovincialis is competitively superior in all aspects to the indigenous mussel species, and, as a result, has displaced some of them. On the south coast, M. galloprovincialis found more oligotrophic waters, higher species richness, and a stronger competitor in the indigenous mussel P. perna. The rate of spread of M. galloprovincialis along the south coast has decreased over the last 10 years and the present eastern limit of its distribution in South African is East London. On the south coast, M. galloprovincialis has not yet completely replaced P. perna; instead, the two exhibit spatial segregation, with P. perna dominating the low shore, M. galloprovincialis the high shore and an overlap zone between the two. An experiment on competition was carried out at one site on the south coast. The results showed that, on the low shore, P. perna is a more dominant competitor for space than M. galloprovincialis. Also byssus attachment of the two species differs, P. perna being much stronger than M. galloprovincialis, which suffers high mortality due to wave action on the low shore, especially in monospecific beds. As a result, mortality of M. galloprovincialis through wave action is reduced by the presence of P. perna, which seems to confer protection against dislodgement. However, in the absence of strong wave action, P. perna competitively excludes M. galloprovincialis. Human exploitation along 160 km of coast was examined by sampling mussel populations and using aerial surveys to determine where harvesters were distributed. Collectors did not seem to discriminate between species. The study has shown that higher abundances of mussels were found in protected or inaccessible sites, while in unprotected sites mussels were scarce. Coastal nature reserves are being proven to be effective in protecting mussel populations.
- Full Text:
- Date Issued: 2005
The role of acute toxicity data for South African freshwater macroinvertebrates in the derivation of water quality guidelines for salinity
- Authors: Browne, Samantha
- Date: 2005
- Subjects: Water-supply -- South Africa , Water quality management -- South Africa , Aquatic ecology -- South Africa , Ecosystem management -- South Africa , Freshwater invertebrates -- South Africa -- Ecology , Water -- Toxicology -- South Africa , Water quality biological assessment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4742 , http://hdl.handle.net/10962/d1006173 , Water-supply -- South Africa , Water quality management -- South Africa , Aquatic ecology -- South Africa , Ecosystem management -- South Africa , Freshwater invertebrates -- South Africa -- Ecology , Water -- Toxicology -- South Africa , Water quality biological assessment
- Description: Water resources are under ever-increasing pressure to meet the demands of various water users both nationally and internationally. The process of anthropogenically-induced salinisation serves to exacerbate this pressure by limiting the quantity and quality of water available for future use. Water quality guidelines provide the numerical goals which water resource managers can use to adequately manage and protect aquatic ecosystems. Various methods which have been developed and used internationally to derive such guidelines are discussed. Acute toxicity tests were conducted using two inorganic salts, NaCl and Na₂SO₄. Field collected, indigenous, freshwater macroinvertebrates were used as tests organisms. Data generated from these tests contributed to the expansion of the currently limited toxicological database of response data for indigenous organisms and the suitability of using such organisms for future testing was discussed. Salt sensitivities of indigenous freshwater invertebrates were compared those of species sourced from an international toxicological database and were found to have similar ranges of tolerances to NaCl and Na₂SO₄. Species sensitivity distributions (SSDs), a method of data extrapolation, were derived using different types of toxicological data, and hence different guideline values or protective concentrations were derived. These concentrations were equated to boundary values for South Africa’s ecological Reserve categories, which are used to describe degrees of health for aquatic ecosystems. Provisional results suggest that using only acute toxicity data in guideline derivation provides ecosystem protection that is under-protective. Chronic toxicity data, which include endpoints other than mortality, provide the most realistic environmental protection but lack data confidence due to small sample sizes (acute tests are more readily conducted than chronic tests). The potential contribution of sub-chronic data to guideline derivation is highlighted as these data are more readily extrapolated to chronic endpoints than acute data and sub-chronic tests are not as complex and demanding to conduct as chronic tests.
- Full Text:
- Date Issued: 2005
- Authors: Browne, Samantha
- Date: 2005
- Subjects: Water-supply -- South Africa , Water quality management -- South Africa , Aquatic ecology -- South Africa , Ecosystem management -- South Africa , Freshwater invertebrates -- South Africa -- Ecology , Water -- Toxicology -- South Africa , Water quality biological assessment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4742 , http://hdl.handle.net/10962/d1006173 , Water-supply -- South Africa , Water quality management -- South Africa , Aquatic ecology -- South Africa , Ecosystem management -- South Africa , Freshwater invertebrates -- South Africa -- Ecology , Water -- Toxicology -- South Africa , Water quality biological assessment
- Description: Water resources are under ever-increasing pressure to meet the demands of various water users both nationally and internationally. The process of anthropogenically-induced salinisation serves to exacerbate this pressure by limiting the quantity and quality of water available for future use. Water quality guidelines provide the numerical goals which water resource managers can use to adequately manage and protect aquatic ecosystems. Various methods which have been developed and used internationally to derive such guidelines are discussed. Acute toxicity tests were conducted using two inorganic salts, NaCl and Na₂SO₄. Field collected, indigenous, freshwater macroinvertebrates were used as tests organisms. Data generated from these tests contributed to the expansion of the currently limited toxicological database of response data for indigenous organisms and the suitability of using such organisms for future testing was discussed. Salt sensitivities of indigenous freshwater invertebrates were compared those of species sourced from an international toxicological database and were found to have similar ranges of tolerances to NaCl and Na₂SO₄. Species sensitivity distributions (SSDs), a method of data extrapolation, were derived using different types of toxicological data, and hence different guideline values or protective concentrations were derived. These concentrations were equated to boundary values for South Africa’s ecological Reserve categories, which are used to describe degrees of health for aquatic ecosystems. Provisional results suggest that using only acute toxicity data in guideline derivation provides ecosystem protection that is under-protective. Chronic toxicity data, which include endpoints other than mortality, provide the most realistic environmental protection but lack data confidence due to small sample sizes (acute tests are more readily conducted than chronic tests). The potential contribution of sub-chronic data to guideline derivation is highlighted as these data are more readily extrapolated to chronic endpoints than acute data and sub-chronic tests are not as complex and demanding to conduct as chronic tests.
- Full Text:
- Date Issued: 2005
Screening of technologies for the recovery of rhodium (III) metal ions from a precious metal refinery wastewater
- Authors: Mack, Cherie-Lynn
- Date: 2005
- Subjects: Rhodium , Metal ions , Sewage -- Purification -- Metals removal , Platinum group
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3987 , http://hdl.handle.net/10962/d1004046 , Rhodium , Metal ions , Sewage -- Purification -- Metals removal , Platinum group
- Description: The selective recovery of rhodium from wastewaters, in which the metal would be otherwise lost, would be highly profitable if the process were suitably low-cost. Current recovery processes are generally high maintenance and high-cost, whereas biological processes can be engineered to run with little external input in terms of cost and maintenance. Three emerging technologies were chosen based on their reported efficiency when removing base metals from wastewaters. The first technology screened, the sulphide-extraction membrane bioreactor (SEMB), consists of a sulphate-reducing prokaryote (SRP) anaerobic digester, in which a silicone membrane is submerged. Wastewater is passed through the membrane and metal ions are precipitated as metal sulphides by the hydrogen sulphide gas, which is capable of permeating the membrane. The second technology screened was a fluidized sand bed reactor in which metal ions are removed from solution via induction of nucleated precipitation by sodium carbonate onto the sand grains. The third, and most well established removal technology screened was a biosorption system using immobilized Saccharomyces cerevisiae biomass as the biosorbent. Experimental trials with each technology highlighted drawbacks with each; the SEMB system proved to be largely ineffective when challenged with the removal of rhodium from the wastewater as the rhodium precipitate fouled the membrane within hours, the fluidized bed system seemed unable to overcome the acidity of the wastewater and thus could not precipitate out the rhodium metal, and the efficiency of the biosorption process was hampered by the diversity of rhodium species present in the wastewater, which reduced the amount recovered. The outcomes of the trials with each technology indicated that further optimization of the technology or pretreatment of the wastewater is necessary before any of these options can be implemented. It could be concluded, however, that despite further optimization, both the SEMB and the fluidized bed system were not applicable in this case as precipitation would be non-specific, resulting in the necessity for further steps in order to purify the rhodium ions. Hence, the biosorption system was shown to be most applicable, and further optimization of the system could yield a highly efficient rhodium recovery process.
- Full Text:
- Date Issued: 2005
- Authors: Mack, Cherie-Lynn
- Date: 2005
- Subjects: Rhodium , Metal ions , Sewage -- Purification -- Metals removal , Platinum group
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3987 , http://hdl.handle.net/10962/d1004046 , Rhodium , Metal ions , Sewage -- Purification -- Metals removal , Platinum group
- Description: The selective recovery of rhodium from wastewaters, in which the metal would be otherwise lost, would be highly profitable if the process were suitably low-cost. Current recovery processes are generally high maintenance and high-cost, whereas biological processes can be engineered to run with little external input in terms of cost and maintenance. Three emerging technologies were chosen based on their reported efficiency when removing base metals from wastewaters. The first technology screened, the sulphide-extraction membrane bioreactor (SEMB), consists of a sulphate-reducing prokaryote (SRP) anaerobic digester, in which a silicone membrane is submerged. Wastewater is passed through the membrane and metal ions are precipitated as metal sulphides by the hydrogen sulphide gas, which is capable of permeating the membrane. The second technology screened was a fluidized sand bed reactor in which metal ions are removed from solution via induction of nucleated precipitation by sodium carbonate onto the sand grains. The third, and most well established removal technology screened was a biosorption system using immobilized Saccharomyces cerevisiae biomass as the biosorbent. Experimental trials with each technology highlighted drawbacks with each; the SEMB system proved to be largely ineffective when challenged with the removal of rhodium from the wastewater as the rhodium precipitate fouled the membrane within hours, the fluidized bed system seemed unable to overcome the acidity of the wastewater and thus could not precipitate out the rhodium metal, and the efficiency of the biosorption process was hampered by the diversity of rhodium species present in the wastewater, which reduced the amount recovered. The outcomes of the trials with each technology indicated that further optimization of the technology or pretreatment of the wastewater is necessary before any of these options can be implemented. It could be concluded, however, that despite further optimization, both the SEMB and the fluidized bed system were not applicable in this case as precipitation would be non-specific, resulting in the necessity for further steps in order to purify the rhodium ions. Hence, the biosorption system was shown to be most applicable, and further optimization of the system could yield a highly efficient rhodium recovery process.
- Full Text:
- Date Issued: 2005
Stress-inducible protein 1: a bioinformatic analysis of the human, mouse and yeast STI1 gene structure
- Authors: Aken, Bronwen Louise
- Date: 2005
- Subjects: Molecular chaperones , Proteins -- Analysis , Heat shock proteins , Bioinformatics , Genetics -- Data processing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3990 , http://hdl.handle.net/10962/d1004049 , Molecular chaperones , Proteins -- Analysis , Heat shock proteins , Bioinformatics , Genetics -- Data processing
- Description: Stress-inducible protein 1 (Sti1) is a 60 kDa eukaryotic protein that is important under stress and non-stress conditions. Human Sti1 is also known as the Hsp70/Hsp90 organising protein (Hop) that coordinates the functional cooperation of heat shock protein 70 (Hsp70) and heat shock protein 90 (Hsp90) during the folding of various transcription factors and kinases, including certain oncogenic proteins and prion proteins. Limited studies have been conducted on the STI1 gene structure. Thus, the aim of this study was to develop a comprehensive description of human STI1 (hSTI1), mouse STI1 (mSTI1), and yeast STI1 (ySTI1) genes, using a bioinformatic approach. Genes encoded near the STI1 loci were identified for the three organisms using National Centre for Biotechnology Information (NCBI) MapViewer and the Saccharomyces Genome Database. Exon/intron boundaries were predicted using Hidden Markov model gene prediction software (HMMGene) and Genscan, and by alignment of the mRNA sequence with the genomic DNA sequence. Transcription factor binding sites (TFBS) were predicted by scanning the region 1000 base pairs (bp) upstream of the STI1 orthologues’ transcription start site (TSS) with Alibaba, Transcription element search software (TESS) and Transcription factor search (TFSearch). The promoter region was defined by comparing the number, type and position of TFBS across the orthologous STI1 genes. Additional putative TFBS were identified for ySTI1 by searching with software that aligns nucleic acid conserved elements (AlignACE) for over-represented motifs in the region upstream of the TSS of genes thought to be co-regulated with ySTI1. This study showed that hSTI1 and mSTI1 occur in a region of synteny with a number of genes of related function. Both hSTI1 and mSTI1 comprised 14 putative exons, while ySTI1 was encoded on a single exon. Human and mouse STI1 shared a perfectly conserved 55 bp region spanning their predicted TSS, although their TATA boxes were not conserved. A putative CpG island was identified in the region from -500 to +100 bp relative to the hSTI1 and mSTI1 TSS. This region overlapped with a region of high TFBS density, suggesting that the core promoter region was located in the region approximately 100 to 200 bp upstream of the TSS. Several conserved clusters of TFBS were also identified upstream of this promoter region, including binding sites for stimulatory protein 1 (Sp1), heat shock factor (HSF), nuclear factor kappa B (NF-kappaB), and the cAMP/enhancer binding protein (C/EBP). Microarray data suggested that ySTI1 was co-regulated with several heat shock proteins and substrates of the Hsp70/Hsp90 heterocomplex, and several putative regulatory elements were identified in the upstream region of these co-regulated genes, including a motif for HSF binding. The results of this research suggest several avenues of future experimental work, including the confirmation of the proposed core promoter, upstream regulatory elements, and CpG island, and the investigation into the co-regulation of mammalian STI1 with its surrounding genes. These results could also be used to inform STI1 gene knockout experiments in mice, to assess the biological importance of mammalian STI1.
- Full Text:
- Date Issued: 2005
- Authors: Aken, Bronwen Louise
- Date: 2005
- Subjects: Molecular chaperones , Proteins -- Analysis , Heat shock proteins , Bioinformatics , Genetics -- Data processing
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3990 , http://hdl.handle.net/10962/d1004049 , Molecular chaperones , Proteins -- Analysis , Heat shock proteins , Bioinformatics , Genetics -- Data processing
- Description: Stress-inducible protein 1 (Sti1) is a 60 kDa eukaryotic protein that is important under stress and non-stress conditions. Human Sti1 is also known as the Hsp70/Hsp90 organising protein (Hop) that coordinates the functional cooperation of heat shock protein 70 (Hsp70) and heat shock protein 90 (Hsp90) during the folding of various transcription factors and kinases, including certain oncogenic proteins and prion proteins. Limited studies have been conducted on the STI1 gene structure. Thus, the aim of this study was to develop a comprehensive description of human STI1 (hSTI1), mouse STI1 (mSTI1), and yeast STI1 (ySTI1) genes, using a bioinformatic approach. Genes encoded near the STI1 loci were identified for the three organisms using National Centre for Biotechnology Information (NCBI) MapViewer and the Saccharomyces Genome Database. Exon/intron boundaries were predicted using Hidden Markov model gene prediction software (HMMGene) and Genscan, and by alignment of the mRNA sequence with the genomic DNA sequence. Transcription factor binding sites (TFBS) were predicted by scanning the region 1000 base pairs (bp) upstream of the STI1 orthologues’ transcription start site (TSS) with Alibaba, Transcription element search software (TESS) and Transcription factor search (TFSearch). The promoter region was defined by comparing the number, type and position of TFBS across the orthologous STI1 genes. Additional putative TFBS were identified for ySTI1 by searching with software that aligns nucleic acid conserved elements (AlignACE) for over-represented motifs in the region upstream of the TSS of genes thought to be co-regulated with ySTI1. This study showed that hSTI1 and mSTI1 occur in a region of synteny with a number of genes of related function. Both hSTI1 and mSTI1 comprised 14 putative exons, while ySTI1 was encoded on a single exon. Human and mouse STI1 shared a perfectly conserved 55 bp region spanning their predicted TSS, although their TATA boxes were not conserved. A putative CpG island was identified in the region from -500 to +100 bp relative to the hSTI1 and mSTI1 TSS. This region overlapped with a region of high TFBS density, suggesting that the core promoter region was located in the region approximately 100 to 200 bp upstream of the TSS. Several conserved clusters of TFBS were also identified upstream of this promoter region, including binding sites for stimulatory protein 1 (Sp1), heat shock factor (HSF), nuclear factor kappa B (NF-kappaB), and the cAMP/enhancer binding protein (C/EBP). Microarray data suggested that ySTI1 was co-regulated with several heat shock proteins and substrates of the Hsp70/Hsp90 heterocomplex, and several putative regulatory elements were identified in the upstream region of these co-regulated genes, including a motif for HSF binding. The results of this research suggest several avenues of future experimental work, including the confirmation of the proposed core promoter, upstream regulatory elements, and CpG island, and the investigation into the co-regulation of mammalian STI1 with its surrounding genes. These results could also be used to inform STI1 gene knockout experiments in mice, to assess the biological importance of mammalian STI1.
- Full Text:
- Date Issued: 2005