Development and assessment of medicines information for antiretroviral therapy in Sub-Saharan Africa
- Authors: Mwingira, Betty
- Date: 2005
- Subjects: AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3779 , http://hdl.handle.net/10962/d1003257 , AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Full Text:
- Date Issued: 2005
Development and assessment of medicines information for antiretroviral therapy in Sub-Saharan Africa
- Authors: Mwingira, Betty
- Date: 2005
- Subjects: AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3779 , http://hdl.handle.net/10962/d1003257 , AIDS (Disease) -- Africa, Sub-Saharan , AIDS (Disease) -- Treatment -- Africa, Sub-Saharan , AIDS (Disease) -- Juvenile literature -- Africa, Sub-Saharan , HIV infections -- Treatment -- Africa, Sub-Saharan , HIV infections -- Africa, Sub-Saharan , Antiretroviral agents -- Africa, Sub-Saharan , HIV-positive persons -- Care -- Africa, Sub-Saharan , Hiv-positive persons -- Medical care -- Africa, Sub-Saharan , AIDS (Disease) -- Study and teaching -- Africa, Sub-Saharan
- Full Text:
- Date Issued: 2005
Investigating the viability of a framework for small scale, easily deployable and extensible hotspot management systems
- Authors: Thinyane, Mamello P
- Date: 2006
- Subjects: Local area networks (Computer networks) , Computer networks -- Management , Computer network architectures , Computer network protocols , Wireless communication systems , XML (Document markup language)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4638 , http://hdl.handle.net/10962/d1006553
- Description: The proliferation of PALs (Public Access Locations) is fuelling the development of new standards, protocols, services, and applications for WLANs (Wireless Local Area Networks). PALs are set up at public locations to meet continually changing, multiservice, multi-protocol user requirements. This research investigates the essential infrastructural requirements that will enable further proliferation of PALs, and consequently facilitate ubiquitous computing. Based on these requirements, an extensible architectural framework for PAL management systems that inherently facilitates the provisioning of multiple services and multiple protocols on PALs is derived. The ensuing framework, which is called Xobogel, is based on the microkernel architectural pattern, and the IPDR (Internet Protocol Data Record) specification. Xobogel takes into consideration and supports the implementation of diverse business models for PALs, in respect of distinct environmental factors. It also facilitates next-generation network service usage accounting through a simple, flexible, and extensible XML based usage record. The framework is subsequently validated for service element extensibility and simplicity through the design, implementation, and experimental deployment of SEHS (Small Extensible Hotspot System), a system based on the framework. The robustness and scalability of the framework is observed to be sufficient for SMME deployment, withstanding the stress testing experiments performed on SEHS. The range of service element and charging modules implemented confirm an acceptable level of flexibility and extensibility within the framework.
- Full Text:
- Date Issued: 2006
- Authors: Thinyane, Mamello P
- Date: 2006
- Subjects: Local area networks (Computer networks) , Computer networks -- Management , Computer network architectures , Computer network protocols , Wireless communication systems , XML (Document markup language)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4638 , http://hdl.handle.net/10962/d1006553
- Description: The proliferation of PALs (Public Access Locations) is fuelling the development of new standards, protocols, services, and applications for WLANs (Wireless Local Area Networks). PALs are set up at public locations to meet continually changing, multiservice, multi-protocol user requirements. This research investigates the essential infrastructural requirements that will enable further proliferation of PALs, and consequently facilitate ubiquitous computing. Based on these requirements, an extensible architectural framework for PAL management systems that inherently facilitates the provisioning of multiple services and multiple protocols on PALs is derived. The ensuing framework, which is called Xobogel, is based on the microkernel architectural pattern, and the IPDR (Internet Protocol Data Record) specification. Xobogel takes into consideration and supports the implementation of diverse business models for PALs, in respect of distinct environmental factors. It also facilitates next-generation network service usage accounting through a simple, flexible, and extensible XML based usage record. The framework is subsequently validated for service element extensibility and simplicity through the design, implementation, and experimental deployment of SEHS (Small Extensible Hotspot System), a system based on the framework. The robustness and scalability of the framework is observed to be sufficient for SMME deployment, withstanding the stress testing experiments performed on SEHS. The range of service element and charging modules implemented confirm an acceptable level of flexibility and extensibility within the framework.
- Full Text:
- Date Issued: 2006
Designing and implementing a virtual reality interaction framework
- Authors: Rorke, Michael
- Date: 2000
- Subjects: Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4623 , http://hdl.handle.net/10962/d1006491 , Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Description: Virtual Reality offers the possibility for humans to interact in a more natural way with the computer and its applications. Currently, Virtual Reality is used mainly in the field of visualisation where 3D graphics allow users to more easily view complex sets of data or structures. The field of interaction in Virtual Reality has been largely neglected due mainly to problems with input devices and equipment costs. Recent research has aimed to overcome these interaction problems, thereby creating a usable interaction platform for Virtual Reality. This thesis presents a background into the field of interaction in Virtual Reality. It goes on to propose a generic framework for the implementation of common interaction techniques into a homogeneous application development environment. This framework adds a new layer to the standard Virtual Reality toolkit – the interaction abstraction layer, or interactor layer. This separation is in line with current HCI practices. The interactor layer is further divided into specific sections – input component, interaction component, system component, intermediaries, entities and widgets. Each of these performs a specific function, with clearly defined interfaces between the different components to promote easy objectoriented implementation of the framework. The validity of the framework is shown in comparison with accepted taxonomies in the area of Virtual Reality interaction. Thus demonstrating that the framework covers all the relevant factors involved in the field. Furthermore, the thesis describes an implementation of this framework. The implementation was completed using the Rhodes University CoRgi Virtual Reality toolkit. Several postgraduate students in the Rhodes University Computer Science Department utilised the framework implementation to develop a set of case studies. These case studies demonstrate the practical use of the framework to create useful Virtual Reality applications, as well as demonstrating the generic nature of the framework and its extensibility to be able to handle new interaction techniques. Finally, the generic nature of the framework is further demonstrated by moving it from the standard CoRgi Virtual Reality toolkit, to a distributed version of this toolkit. The distributed implementation of the framework utilises the Common Object Request Broker Architecture (CORBA) to implement the distribution of the objects in the system. Using this distributed implementation, we are able to ascertain that CORBA is useful in the field of distributed real-time Virtual Reality, even taking into account the extra overhead introduced by the additional abstraction layer. We conclude from this thesis that it is important to abstract the interaction layer from the other layers of a Virtual Reality toolkit in order to provide a consistent interface to developers. We have shown that our framework is implementable and useful in the field, making it easier for developers to include interaction in their Virtual Reality applications. Our framework is able to handle all the current aspects of interaction in Virtual Reality, as well as being general enough to implement future interaction techniques. The framework is also applicable to different Virtual Reality toolkits and development platforms, making it ideal for developing general, cross-platform interactive Virtual Reality applications.
- Full Text:
- Date Issued: 2000
- Authors: Rorke, Michael
- Date: 2000
- Subjects: Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4623 , http://hdl.handle.net/10962/d1006491 , Virtual reality , Computer simulation , Human-computer interaction , Computer graphics
- Description: Virtual Reality offers the possibility for humans to interact in a more natural way with the computer and its applications. Currently, Virtual Reality is used mainly in the field of visualisation where 3D graphics allow users to more easily view complex sets of data or structures. The field of interaction in Virtual Reality has been largely neglected due mainly to problems with input devices and equipment costs. Recent research has aimed to overcome these interaction problems, thereby creating a usable interaction platform for Virtual Reality. This thesis presents a background into the field of interaction in Virtual Reality. It goes on to propose a generic framework for the implementation of common interaction techniques into a homogeneous application development environment. This framework adds a new layer to the standard Virtual Reality toolkit – the interaction abstraction layer, or interactor layer. This separation is in line with current HCI practices. The interactor layer is further divided into specific sections – input component, interaction component, system component, intermediaries, entities and widgets. Each of these performs a specific function, with clearly defined interfaces between the different components to promote easy objectoriented implementation of the framework. The validity of the framework is shown in comparison with accepted taxonomies in the area of Virtual Reality interaction. Thus demonstrating that the framework covers all the relevant factors involved in the field. Furthermore, the thesis describes an implementation of this framework. The implementation was completed using the Rhodes University CoRgi Virtual Reality toolkit. Several postgraduate students in the Rhodes University Computer Science Department utilised the framework implementation to develop a set of case studies. These case studies demonstrate the practical use of the framework to create useful Virtual Reality applications, as well as demonstrating the generic nature of the framework and its extensibility to be able to handle new interaction techniques. Finally, the generic nature of the framework is further demonstrated by moving it from the standard CoRgi Virtual Reality toolkit, to a distributed version of this toolkit. The distributed implementation of the framework utilises the Common Object Request Broker Architecture (CORBA) to implement the distribution of the objects in the system. Using this distributed implementation, we are able to ascertain that CORBA is useful in the field of distributed real-time Virtual Reality, even taking into account the extra overhead introduced by the additional abstraction layer. We conclude from this thesis that it is important to abstract the interaction layer from the other layers of a Virtual Reality toolkit in order to provide a consistent interface to developers. We have shown that our framework is implementable and useful in the field, making it easier for developers to include interaction in their Virtual Reality applications. Our framework is able to handle all the current aspects of interaction in Virtual Reality, as well as being general enough to implement future interaction techniques. The framework is also applicable to different Virtual Reality toolkits and development platforms, making it ideal for developing general, cross-platform interactive Virtual Reality applications.
- Full Text:
- Date Issued: 2000
Investigation of the comparative cost-effectiveness of different strategies for the management of multidrug-resistant tuberculosis
- Authors: Rockcliffe, Nicole
- Date: 2003
- Subjects: Tuberculosis , Multidrug resistance , Tuberculosis -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3788 , http://hdl.handle.net/10962/d1003266 , Tuberculosis , Multidrug resistance , Tuberculosis -- Treatment
- Description: The tuberculosis epidemic is escalating in South Africa as well as globally. This escalation is exacerbated by the increasing prevalence of multidrug-resistant tuberculosis (MDRTB), which is defined by the World Health Organisation (WHO) as resistance of Mycobacteria to at least isoniazid and rifampicin. Multi-drug resistant tuberculosis is estimated to occur in 1-2% of newly diagnosed tuberculosis (TB) patients and in 4-8% of previously treated patients. MDRTB is both difficult and expensive to treat, costing up to 126 times that of drug-sensitive TB. Resource constrained countries such as South Africa often lack both the money and the infrastructure to treat this disease. The aim of this project was to determine whether the performance of a systematic review with subsequent economic modelling could influence the decision making process for policy makers. Data was gathered and an economic evaluation of MDRTB treatment was performed from the perspective of the South African Department of Health. Three treatment alternatives were identified: a protocol regimen of second line anti-tuberculosis agents, as recommended in the South African guidelines for MDRTB, an appropriate regimen designed for each patient according to the results of culture and drug susceptibility tests, and non-drug management. A decision-analysis model using DATA 3.0 by Treeage® was developed to estimate the costs of each alternative. Outcomes were measured in terms of cost alone as well as the ‘number of cases cured’ and the number of ‘years of life saved’ for patients dying, being cured or failing treatment. Drug, hospital and laboratory costs incurred using each alternative were included in the analysis. A sensitivity analysis was performed on all variables in order to identify threshold values that would change the outcome of the evaluation. Results of the decision analysis indicate that the individualised regimen was both the cheaper and more cost-effective regimen of the two active treatment options, and was estimated to cost R50 661 per case cured and R2 070 per year of life saved. The protocol regimen was estimated to cost R73 609 per case cured and R2 741 per year of life saved. The outcome of the decision analysis was sensitive to changes in some of the variables used to model the disease, particularly the daily cost of drugs, the length of time spent in hospital and the length of treatment received by those patients dying or failing treatment. This modelling exercise highlighted significant deficiencies in the quality of evidence on MDRTB management available to policy makers. Pragmatic choices based on operational and other logistic concerns may need to be reviewed when further information becomes available. A case can be made for the establishment of a national database of costing and efficacy information to guide future policy revisions of the South African MDRTB treatment programme, which is resource intensive and of only moderate efficacy. However, due to the widely disparate range of studies on which this evaluation was based, the outcome of the study may not be credible. In this case, the use of a systematic review with subsequent economic modelling could not validly influence policy-makers to change the decision that they made on the basis of drug availability.
- Full Text:
- Date Issued: 2003
- Authors: Rockcliffe, Nicole
- Date: 2003
- Subjects: Tuberculosis , Multidrug resistance , Tuberculosis -- Treatment
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3788 , http://hdl.handle.net/10962/d1003266 , Tuberculosis , Multidrug resistance , Tuberculosis -- Treatment
- Description: The tuberculosis epidemic is escalating in South Africa as well as globally. This escalation is exacerbated by the increasing prevalence of multidrug-resistant tuberculosis (MDRTB), which is defined by the World Health Organisation (WHO) as resistance of Mycobacteria to at least isoniazid and rifampicin. Multi-drug resistant tuberculosis is estimated to occur in 1-2% of newly diagnosed tuberculosis (TB) patients and in 4-8% of previously treated patients. MDRTB is both difficult and expensive to treat, costing up to 126 times that of drug-sensitive TB. Resource constrained countries such as South Africa often lack both the money and the infrastructure to treat this disease. The aim of this project was to determine whether the performance of a systematic review with subsequent economic modelling could influence the decision making process for policy makers. Data was gathered and an economic evaluation of MDRTB treatment was performed from the perspective of the South African Department of Health. Three treatment alternatives were identified: a protocol regimen of second line anti-tuberculosis agents, as recommended in the South African guidelines for MDRTB, an appropriate regimen designed for each patient according to the results of culture and drug susceptibility tests, and non-drug management. A decision-analysis model using DATA 3.0 by Treeage® was developed to estimate the costs of each alternative. Outcomes were measured in terms of cost alone as well as the ‘number of cases cured’ and the number of ‘years of life saved’ for patients dying, being cured or failing treatment. Drug, hospital and laboratory costs incurred using each alternative were included in the analysis. A sensitivity analysis was performed on all variables in order to identify threshold values that would change the outcome of the evaluation. Results of the decision analysis indicate that the individualised regimen was both the cheaper and more cost-effective regimen of the two active treatment options, and was estimated to cost R50 661 per case cured and R2 070 per year of life saved. The protocol regimen was estimated to cost R73 609 per case cured and R2 741 per year of life saved. The outcome of the decision analysis was sensitive to changes in some of the variables used to model the disease, particularly the daily cost of drugs, the length of time spent in hospital and the length of treatment received by those patients dying or failing treatment. This modelling exercise highlighted significant deficiencies in the quality of evidence on MDRTB management available to policy makers. Pragmatic choices based on operational and other logistic concerns may need to be reviewed when further information becomes available. A case can be made for the establishment of a national database of costing and efficacy information to guide future policy revisions of the South African MDRTB treatment programme, which is resource intensive and of only moderate efficacy. However, due to the widely disparate range of studies on which this evaluation was based, the outcome of the study may not be credible. In this case, the use of a systematic review with subsequent economic modelling could not validly influence policy-makers to change the decision that they made on the basis of drug availability.
- Full Text:
- Date Issued: 2003
Combining DNA barcoding and morphology to identify larval fishes from the nearshore environment off the south-east coast of South Africa
- Authors: Somana, Zinzi Sinazo
- Date: 2020
- Subjects: Fishes -- Larvae -- South Africa -- Identification , Fishes -- Genetics -- Research -- Technique , Fishes -- South Africa -- Classification , Genetic markers
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/144605 , vital:38362
- Description: The early life history stages of most marine fish species are undescribed. The problem is, most of these fishes have pelagic larvae which are minute, delicate forms. Linking the larval stage to an adult counterpart is extremely challenging as larvae are morphologically different from the adults. Historically, larval fish identification relied solely on distinguishing morphological characteristics and meristic measurements, which has resulted in taxonomic confusion and misidentification. The introduction of the deoxyribonucleic acid (DNA) barcoding technique as an alternative approach has been successful in positively identifying larval fishes. The correct identification of larval specimens is the key to a better understanding of larval ecology, which underpins the success of any adult fish population. This study aimed to positively identify larval fishes of the south-east coast of South Africa using morphological characteristics and DNA barcoding. Larval and eggs specimens for this study were collected from the shallow nearshore waters of the south-east coast of South Africa. A total of 177 larval specimens were used for morphological analysis. Body shape, gut shape, pigmentation and morphometric measurements (such as body depth, preanal length and total body length) were used to identify each specimen to the family level. In addition, a fragment of mitochondrial cytochrome c oxidase subunit 1 gene (COI) was adopted for sequencing to identify larval fish specimens and fish eggs. Sequences generated from this study were compared to those in the Barcode of Life Database (BOLD). When there were no close matches to a sequence, the GenBank nucleic acid sequence database, maintained by the National Center for Biotechnology Information (NCBI), was used as an alternative. A total of 18 different families were identified through morphology. Seventy-seven of the 177 larval specimens were not subjected to morphological identification due to physical damage. The majority of larvae identified using morphological characteristics belonged to either the Sparidae, Tripterygiidae or Gobiesocidae fish families. Through DNA barcoding, 12 fish families, 16 genera and 18 different species were identified. Ten DNA barcodes (categorised as ‘no match’) from 10 different larval specimens were not identified through any of the online databases. Therefore, the 2% threshold value was used to identify members of the same species. The K2P genetic distance relationships were calculated among the no match sequences and downloaded probability matches from NCBI. This resulted in two unknown specimens assigned to the Blenniidae and Gobiidae. All other taxa were identified to species level, except specimens representing the Gobiidae and Tripterygiidae families. Based on the K2P genetic distances Gobiidae representatives were categorised as members of the Caffrogobius genus. Twenty-eight barcodes represented specimens from the Tripterygiidae. DNA barcode data from COI was analysed using the standard phylogenetic procedures in MEGA6 to examine relationships and differentiation among sequences. These could not be identified to the lowest taxonomic rank due to limited sequence data to compare them with. The sequence data from these specimens gave different results in the two online databases. BOLD results were to family level (Tripterygiidae) and NCBI to the species level (Clinidae: Pavoclinus profundus). Results in this study confirmed the efficiency of the DNA barcoding technique in species level identification of fish larvae. The evidence from genetic barcodes of the Tripterygiidae specimens, supported by morphological characteristics, suggests the need for thorough research to identify the individuals to the species level. The fact that this study identified taxonomically problematic Gobiidae and Tripterygiidae specimens suggests that studies similar to this may highlight additional diversity and help to resolve the taxonomy of other species in these families. However, the lack of reference sequence data from the adult specimens, and especially those with cryptic diversity, were both shortcomings for the positive identification of larvae. With that being said, it shows the necessity for more research to be conducted on barcoding of larvae in general as to accommodate all kinds of species from biodiversity to economic perspectives.
- Full Text:
- Date Issued: 2020
- Authors: Somana, Zinzi Sinazo
- Date: 2020
- Subjects: Fishes -- Larvae -- South Africa -- Identification , Fishes -- Genetics -- Research -- Technique , Fishes -- South Africa -- Classification , Genetic markers
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/144605 , vital:38362
- Description: The early life history stages of most marine fish species are undescribed. The problem is, most of these fishes have pelagic larvae which are minute, delicate forms. Linking the larval stage to an adult counterpart is extremely challenging as larvae are morphologically different from the adults. Historically, larval fish identification relied solely on distinguishing morphological characteristics and meristic measurements, which has resulted in taxonomic confusion and misidentification. The introduction of the deoxyribonucleic acid (DNA) barcoding technique as an alternative approach has been successful in positively identifying larval fishes. The correct identification of larval specimens is the key to a better understanding of larval ecology, which underpins the success of any adult fish population. This study aimed to positively identify larval fishes of the south-east coast of South Africa using morphological characteristics and DNA barcoding. Larval and eggs specimens for this study were collected from the shallow nearshore waters of the south-east coast of South Africa. A total of 177 larval specimens were used for morphological analysis. Body shape, gut shape, pigmentation and morphometric measurements (such as body depth, preanal length and total body length) were used to identify each specimen to the family level. In addition, a fragment of mitochondrial cytochrome c oxidase subunit 1 gene (COI) was adopted for sequencing to identify larval fish specimens and fish eggs. Sequences generated from this study were compared to those in the Barcode of Life Database (BOLD). When there were no close matches to a sequence, the GenBank nucleic acid sequence database, maintained by the National Center for Biotechnology Information (NCBI), was used as an alternative. A total of 18 different families were identified through morphology. Seventy-seven of the 177 larval specimens were not subjected to morphological identification due to physical damage. The majority of larvae identified using morphological characteristics belonged to either the Sparidae, Tripterygiidae or Gobiesocidae fish families. Through DNA barcoding, 12 fish families, 16 genera and 18 different species were identified. Ten DNA barcodes (categorised as ‘no match’) from 10 different larval specimens were not identified through any of the online databases. Therefore, the 2% threshold value was used to identify members of the same species. The K2P genetic distance relationships were calculated among the no match sequences and downloaded probability matches from NCBI. This resulted in two unknown specimens assigned to the Blenniidae and Gobiidae. All other taxa were identified to species level, except specimens representing the Gobiidae and Tripterygiidae families. Based on the K2P genetic distances Gobiidae representatives were categorised as members of the Caffrogobius genus. Twenty-eight barcodes represented specimens from the Tripterygiidae. DNA barcode data from COI was analysed using the standard phylogenetic procedures in MEGA6 to examine relationships and differentiation among sequences. These could not be identified to the lowest taxonomic rank due to limited sequence data to compare them with. The sequence data from these specimens gave different results in the two online databases. BOLD results were to family level (Tripterygiidae) and NCBI to the species level (Clinidae: Pavoclinus profundus). Results in this study confirmed the efficiency of the DNA barcoding technique in species level identification of fish larvae. The evidence from genetic barcodes of the Tripterygiidae specimens, supported by morphological characteristics, suggests the need for thorough research to identify the individuals to the species level. The fact that this study identified taxonomically problematic Gobiidae and Tripterygiidae specimens suggests that studies similar to this may highlight additional diversity and help to resolve the taxonomy of other species in these families. However, the lack of reference sequence data from the adult specimens, and especially those with cryptic diversity, were both shortcomings for the positive identification of larvae. With that being said, it shows the necessity for more research to be conducted on barcoding of larvae in general as to accommodate all kinds of species from biodiversity to economic perspectives.
- Full Text:
- Date Issued: 2020
An investigation into some aspects of Jovian decametric radiation
- Authors: Hill, I. E.
- Date: 1969
- Subjects: Jupiter (Planet) , Radiation , Magnetosphere
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5552 , http://hdl.handle.net/10962/d1015034
- Description: This thesis describes observations of the flne structure in Jovian decametric radiation made at Grahamstown during the 1967-68 apparition. It was found that pulses with duration less than 0.5 milliseconds were common during fine structure storms. The restrictions placed on the source for different theories of origin of the short pulses are discussed. The variation of the probability of occurrence from year to year is analysed on the assumption that the radiation is found in directions fixed with respect to the planet's magnetic field. It is concluded that there is a factor other than the declination of Earth and the Io effect which controls the probability of occurrence. A detailed analysis suggests a beam width of 3° in latitude at Jupiter but further work is necessary to check this.
- Full Text:
- Date Issued: 1969
- Authors: Hill, I. E.
- Date: 1969
- Subjects: Jupiter (Planet) , Radiation , Magnetosphere
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5552 , http://hdl.handle.net/10962/d1015034
- Description: This thesis describes observations of the flne structure in Jovian decametric radiation made at Grahamstown during the 1967-68 apparition. It was found that pulses with duration less than 0.5 milliseconds were common during fine structure storms. The restrictions placed on the source for different theories of origin of the short pulses are discussed. The variation of the probability of occurrence from year to year is analysed on the assumption that the radiation is found in directions fixed with respect to the planet's magnetic field. It is concluded that there is a factor other than the declination of Earth and the Io effect which controls the probability of occurrence. A detailed analysis suggests a beam width of 3° in latitude at Jupiter but further work is necessary to check this.
- Full Text:
- Date Issued: 1969
Computer modelling of the thermal decomposition of solids
- Authors: De la Croix, Annemarie
- Date: 1996
- Subjects: Solids -- Thermal properties -- Computer simulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4302 , http://hdl.handle.net/10962/d1004960 , Solids -- Thermal properties -- Computer simulation
- Description: Decompositions of solids are typically of the form: A(s) ----> B(s) + gases. Symmetry-controlled routes (based on known and hypothetical crystal structures) for transforming the solid reactant into the solid product were devised as possible decomposition pathways. Lattice energies of the reactants, of the postulated transient intermediate structures and of the final solid products were then estimated by crystal modelling procedures. Profiles of lattice energy changes during the proposed decomposition routes were constructed and any energy barriers were compared with experimental activation energies reported for the thermal decompositions. The crystal modelling was performed with the computer program WMIN. Calculation of the lattice energies involved the development of a model potential for the perfect lattice and the evaluation of the interatomic parameters. The potential was based on the Born model of ionic solids using the Buckingham potential (Ø(r)= Ae⁻r/p - C/r⁶) to describe the short-range energy contribution. Empirical fitting was used to establish reliable interatomic energy parameters. The reliability of the interatomic potentials was assessed by calculating crystal structures and lattice energies (which were not included in the fitting). The particular reactions selected for modelling were the decompositions of the alkaline-earth metal (Ca, Sr, Ba) peroxides and carbonates: M0₂(s) ---> MO(s) + ¹/₂0₂(g) MC0₃(s) ---> MO(s) + CO₂(g)The lattice energies calculated for the known structures were in good agreement with reported values, (except for Ba0₂ and BaC0₃) which provided support for the adequacy of the potential model used. Activation energies calculated for the decomposition of the carbonates were in the correct order but hlgher than experimental values, i. e., 422, 422, 465 and 499 kJ mol̄̄⁻¹ compared to the experimental values of 205, 87(?), 222 and 283 kJ mol̄̄⁻¹ for CaC0₃ (calcite), CaC0₃(aragonite), SrC0₃ and BaC0₃. The values calculated for the peroxides (91 and 100 kJ mol⁻¹ compared to the experimental values of 119 and 185 kJ mol⁻¹ for Sr0₂ and Ba0₂ respectively) were less satisfactory but could be a reflection of the poor structural data used for the peroxides. The significance of this approach to the modelling of solid decompositions is discussed.
- Full Text:
- Date Issued: 1996
- Authors: De la Croix, Annemarie
- Date: 1996
- Subjects: Solids -- Thermal properties -- Computer simulation
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4302 , http://hdl.handle.net/10962/d1004960 , Solids -- Thermal properties -- Computer simulation
- Description: Decompositions of solids are typically of the form: A(s) ----> B(s) + gases. Symmetry-controlled routes (based on known and hypothetical crystal structures) for transforming the solid reactant into the solid product were devised as possible decomposition pathways. Lattice energies of the reactants, of the postulated transient intermediate structures and of the final solid products were then estimated by crystal modelling procedures. Profiles of lattice energy changes during the proposed decomposition routes were constructed and any energy barriers were compared with experimental activation energies reported for the thermal decompositions. The crystal modelling was performed with the computer program WMIN. Calculation of the lattice energies involved the development of a model potential for the perfect lattice and the evaluation of the interatomic parameters. The potential was based on the Born model of ionic solids using the Buckingham potential (Ø(r)= Ae⁻r/p - C/r⁶) to describe the short-range energy contribution. Empirical fitting was used to establish reliable interatomic energy parameters. The reliability of the interatomic potentials was assessed by calculating crystal structures and lattice energies (which were not included in the fitting). The particular reactions selected for modelling were the decompositions of the alkaline-earth metal (Ca, Sr, Ba) peroxides and carbonates: M0₂(s) ---> MO(s) + ¹/₂0₂(g) MC0₃(s) ---> MO(s) + CO₂(g)The lattice energies calculated for the known structures were in good agreement with reported values, (except for Ba0₂ and BaC0₃) which provided support for the adequacy of the potential model used. Activation energies calculated for the decomposition of the carbonates were in the correct order but hlgher than experimental values, i. e., 422, 422, 465 and 499 kJ mol̄̄⁻¹ compared to the experimental values of 205, 87(?), 222 and 283 kJ mol̄̄⁻¹ for CaC0₃ (calcite), CaC0₃(aragonite), SrC0₃ and BaC0₃. The values calculated for the peroxides (91 and 100 kJ mol⁻¹ compared to the experimental values of 119 and 185 kJ mol⁻¹ for Sr0₂ and Ba0₂ respectively) were less satisfactory but could be a reflection of the poor structural data used for the peroxides. The significance of this approach to the modelling of solid decompositions is discussed.
- Full Text:
- Date Issued: 1996
Analysis of the interaction of Hsp90 with the extracellular matrix protein fibronectin (FN)
- Authors: Hunter, Morgan Campbell
- Date: 2014
- Subjects: Heat shock proteins , Fibronectins , Extracellular matrix proteins , Breast -- Cancer
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4170 , http://hdl.handle.net/10962/d1020960
- Description: Mounting evidence suggests that Hsp90 is present and functionally active in the extracellular space. The biological function of extracellular Hsp90 (eHsp90) remains relatively uncharacterized compared to that of intracellular Hsp90. eHsp90 has been shown to interact with a finite number of extracellular proteins, however, despite the identification of eHsp90 interacting proteins, the function of eHsp90 in these complexes is unknown. Several reports suggest a role for eHsp90α in cell migration and invasion. Reported targets for eHsp90 stimulated cell migration include MMPs, LRP-1, tyrosine kinase receptors and possible others unidentified. Limited studies report a role for eHsp90β. Recently, Hsp90α and Hsp90β were isolated in a complex containing fibronectin (FN) on the surface of MDA-MB-231 breast cancer cells. Herein, we report direct binding of Hsp90α and Hsp90β to FN using a solid phase binding assay and surface plasmon resonance (SPR) spectroscopy. SPR spectroscopy showed that Hsp90β bound the 70 kDa amino-terminal fragment of FN (FN70), but that binding of FN to Hsp90β was not limited to FN70. Confocal microscopy showed regions of colocalization of Hsp90 with extracellular FN matrix fibrils in Hs578T breast cancer cell lines. Treatment of Hs578T breast cancer cells with novobiocin (an Hsp90 inhibitor) and an LRP-1 blocking antibody resulted in a loss of FN matrix and FN endocytosis (novobiocin treated). Addition of exogenous Hsp90β was able to recover such effect after both treatments. FN was shown to colocalize with intracellular LRP-1 in novobiocin treated Hs578T cells. Immunoprecipitation of an LRP-1 containing complex showed the presence of Hsp90 and 70 and 120+ kDa FN fragments. Treatment of Hs578T cells with novobiocin increased the level of FN120+ bound in LRP-1 immunoprecipitate. Exogenous Hsp90β decreased the level of low and high molecular weight FN fragments in a complex with LRP-1, despite the fact that higher levels of lower molecular weight FN fragments were detected in this cell lysate compared to the other treatments. We report FN as a novel interacting protein of eHsp90. Taken together, we provide evidence for a direct role of eHsp90β in FN matrix remodeling. We suggest that Hsp90 plays a direct role in FN matrix dynamics through interaction with FN and LRP-1. The identification of FN as a novel interacting protein of eHsp90 suggests a role for Hsp90 in FN matrix remodeling, which is important for a number of fundamental cellular processes including cell migration and metastasis.
- Full Text:
- Date Issued: 2014
- Authors: Hunter, Morgan Campbell
- Date: 2014
- Subjects: Heat shock proteins , Fibronectins , Extracellular matrix proteins , Breast -- Cancer
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4170 , http://hdl.handle.net/10962/d1020960
- Description: Mounting evidence suggests that Hsp90 is present and functionally active in the extracellular space. The biological function of extracellular Hsp90 (eHsp90) remains relatively uncharacterized compared to that of intracellular Hsp90. eHsp90 has been shown to interact with a finite number of extracellular proteins, however, despite the identification of eHsp90 interacting proteins, the function of eHsp90 in these complexes is unknown. Several reports suggest a role for eHsp90α in cell migration and invasion. Reported targets for eHsp90 stimulated cell migration include MMPs, LRP-1, tyrosine kinase receptors and possible others unidentified. Limited studies report a role for eHsp90β. Recently, Hsp90α and Hsp90β were isolated in a complex containing fibronectin (FN) on the surface of MDA-MB-231 breast cancer cells. Herein, we report direct binding of Hsp90α and Hsp90β to FN using a solid phase binding assay and surface plasmon resonance (SPR) spectroscopy. SPR spectroscopy showed that Hsp90β bound the 70 kDa amino-terminal fragment of FN (FN70), but that binding of FN to Hsp90β was not limited to FN70. Confocal microscopy showed regions of colocalization of Hsp90 with extracellular FN matrix fibrils in Hs578T breast cancer cell lines. Treatment of Hs578T breast cancer cells with novobiocin (an Hsp90 inhibitor) and an LRP-1 blocking antibody resulted in a loss of FN matrix and FN endocytosis (novobiocin treated). Addition of exogenous Hsp90β was able to recover such effect after both treatments. FN was shown to colocalize with intracellular LRP-1 in novobiocin treated Hs578T cells. Immunoprecipitation of an LRP-1 containing complex showed the presence of Hsp90 and 70 and 120+ kDa FN fragments. Treatment of Hs578T cells with novobiocin increased the level of FN120+ bound in LRP-1 immunoprecipitate. Exogenous Hsp90β decreased the level of low and high molecular weight FN fragments in a complex with LRP-1, despite the fact that higher levels of lower molecular weight FN fragments were detected in this cell lysate compared to the other treatments. We report FN as a novel interacting protein of eHsp90. Taken together, we provide evidence for a direct role of eHsp90β in FN matrix remodeling. We suggest that Hsp90 plays a direct role in FN matrix dynamics through interaction with FN and LRP-1. The identification of FN as a novel interacting protein of eHsp90 suggests a role for Hsp90 in FN matrix remodeling, which is important for a number of fundamental cellular processes including cell migration and metastasis.
- Full Text:
- Date Issued: 2014
Cosmological structure formation using spectral methods
- Authors: Funcke, Michelle
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2969 , vital:20348
- Description: Numerical simulations are becoming an increasingly important tool for understanding the growth and development of structure in the universe. Common practice is to discretize the space-time using physical variables. The discreteness is embodied by considering the dynamical variables as fields on a fixed spatial and time resolution, or by constructing the matter fields by a large number of particles which interact gravitationally (N-body methods). Recognizing that the physical quantities of interest are related to the spectrum of perturbations, we propose an alternate discretization in the frequency domain, using standard spectral methods. This approach is further aided by periodic boundary conditions which allows a straightforward decomposition of variables in a Fourier basis. Fixed resources require a high-frequency cut-off which lead to aliasing effects in non-linear equations, such as the ones considered here. This thesis describes the implementation of a 3D cosmological model based on Newtonian hydrodynamic equations in an expanding background. Initial data is constructed as a spectrum of perturbations, and evolved in the frequency domain using a pseudo-spectral evolution scheme and an explicit Runge-Kutta time integrator. The code is found to converge for both linear and non-linear evolutions, and the convergence rate is determined. The correct growth rates expected from analytical calculations are recovered in the linear case. In the non-linear model, we observe close correspondence with linear growth and are able to monitor the growth on features associated with the non-linearity. High-frequency aliasing effects were evident in the non-linear evolutions, leading to a study of two potential resolutions to this problem: a boxcar filter which adheres to“Orszag’s two thirds rule” and an exponential window function, the exponential filter suggested by Hou and Li [1], and a shifted version of the exponential filter suggested, which has the potential to alleviate high frequency- ripples resulting from the Gibbs’ phenomenon. We found that the filters were somewhat successful at reducing aliasing effects but that the Gibbs’ phenomenon could not be entirely removed by the choice of filters.
- Full Text:
- Date Issued: 2016
- Authors: Funcke, Michelle
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2969 , vital:20348
- Description: Numerical simulations are becoming an increasingly important tool for understanding the growth and development of structure in the universe. Common practice is to discretize the space-time using physical variables. The discreteness is embodied by considering the dynamical variables as fields on a fixed spatial and time resolution, or by constructing the matter fields by a large number of particles which interact gravitationally (N-body methods). Recognizing that the physical quantities of interest are related to the spectrum of perturbations, we propose an alternate discretization in the frequency domain, using standard spectral methods. This approach is further aided by periodic boundary conditions which allows a straightforward decomposition of variables in a Fourier basis. Fixed resources require a high-frequency cut-off which lead to aliasing effects in non-linear equations, such as the ones considered here. This thesis describes the implementation of a 3D cosmological model based on Newtonian hydrodynamic equations in an expanding background. Initial data is constructed as a spectrum of perturbations, and evolved in the frequency domain using a pseudo-spectral evolution scheme and an explicit Runge-Kutta time integrator. The code is found to converge for both linear and non-linear evolutions, and the convergence rate is determined. The correct growth rates expected from analytical calculations are recovered in the linear case. In the non-linear model, we observe close correspondence with linear growth and are able to monitor the growth on features associated with the non-linearity. High-frequency aliasing effects were evident in the non-linear evolutions, leading to a study of two potential resolutions to this problem: a boxcar filter which adheres to“Orszag’s two thirds rule” and an exponential window function, the exponential filter suggested by Hou and Li [1], and a shifted version of the exponential filter suggested, which has the potential to alleviate high frequency- ripples resulting from the Gibbs’ phenomenon. We found that the filters were somewhat successful at reducing aliasing effects but that the Gibbs’ phenomenon could not be entirely removed by the choice of filters.
- Full Text:
- Date Issued: 2016
Community metabolism and phosphorus dynamics in a seasonally closed South African estuary
- Liptrot, Mark Robert Michael
- Authors: Liptrot, Mark Robert Michael
- Date: 1978
- Subjects: Estuarine ecology -- Research -- South Africa -- Swartvlei , Eelgrass -- Research -- South Africa , Enteromorpha -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5810 , http://hdl.handle.net/10962/d1006966 , Estuarine ecology -- Research -- South Africa -- Swartvlei , Eelgrass -- Research -- South Africa , Enteromorpha -- Research -- South Africa
- Description: The effects of seawater inflows and macrophyte beds on community metabolism and phosphorus dynamics in the seasonally-closed Swartvlei estuary were investigated. Metabolic rates were determined by diurnal oxygen curve analysis. Gross primary production ranged from 0,7 to 14,9 g 0₂ m⁻² day⁻¹, and respiration from 0,9 to 25,2 g 0₂ m⁻² day⁻¹. The highest production rates were recorded inside the dense beds of Zostera capens is Setchell (x- = 7,8 g 0₂ m⁻² day⁻¹ ). Metabolism was positively correlated to submersed macrophyte cover, and decreased upstream of the mouth region. No seasonal variation in gross production could be detected, and mouth closure had no detectable effect on metabolic rates. Growth of the green alga Enteromorpha sp. in winter, and the effect of decay of this alga on dissolved oxygen, total inorganic carbon and total dissolved phosphorus in the water column is discussed. High day-time respiration values, measured in a darkened polythene enclosure, indicate that photorespiration occurs in Zostera. Apparently the annual amount of oxygen respired throughout the estuary exceeded that produced by 2 7100 tonnes, i.e. the estuary was heterotrophic. This is discussed in relation to the effectiveness of the diurnal curve method as a way of measuring metabolic rates, and to the possibility of organic matter input via river inflows. There is a net gain of up to 17,4 kg of particulate phosphorus over mean tides. Diurnal phosphorus studies indicate that Zostera releases phosphate into the water column in the light. Enteromorpha takes up phosphate in the morning, which it appears to release over the rest of the day. The cycling of phosphorus between seawater, sediments, macrophytes and the water column is discussed.
- Full Text:
- Date Issued: 1978
- Authors: Liptrot, Mark Robert Michael
- Date: 1978
- Subjects: Estuarine ecology -- Research -- South Africa -- Swartvlei , Eelgrass -- Research -- South Africa , Enteromorpha -- Research -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5810 , http://hdl.handle.net/10962/d1006966 , Estuarine ecology -- Research -- South Africa -- Swartvlei , Eelgrass -- Research -- South Africa , Enteromorpha -- Research -- South Africa
- Description: The effects of seawater inflows and macrophyte beds on community metabolism and phosphorus dynamics in the seasonally-closed Swartvlei estuary were investigated. Metabolic rates were determined by diurnal oxygen curve analysis. Gross primary production ranged from 0,7 to 14,9 g 0₂ m⁻² day⁻¹, and respiration from 0,9 to 25,2 g 0₂ m⁻² day⁻¹. The highest production rates were recorded inside the dense beds of Zostera capens is Setchell (x- = 7,8 g 0₂ m⁻² day⁻¹ ). Metabolism was positively correlated to submersed macrophyte cover, and decreased upstream of the mouth region. No seasonal variation in gross production could be detected, and mouth closure had no detectable effect on metabolic rates. Growth of the green alga Enteromorpha sp. in winter, and the effect of decay of this alga on dissolved oxygen, total inorganic carbon and total dissolved phosphorus in the water column is discussed. High day-time respiration values, measured in a darkened polythene enclosure, indicate that photorespiration occurs in Zostera. Apparently the annual amount of oxygen respired throughout the estuary exceeded that produced by 2 7100 tonnes, i.e. the estuary was heterotrophic. This is discussed in relation to the effectiveness of the diurnal curve method as a way of measuring metabolic rates, and to the possibility of organic matter input via river inflows. There is a net gain of up to 17,4 kg of particulate phosphorus over mean tides. Diurnal phosphorus studies indicate that Zostera releases phosphate into the water column in the light. Enteromorpha takes up phosphate in the morning, which it appears to release over the rest of the day. The cycling of phosphorus between seawater, sediments, macrophytes and the water column is discussed.
- Full Text:
- Date Issued: 1978
Drought responses of selected C₄ photosynthetic NADP-Me and NAD-Me Panicoideae and Aristidoideae grasses
- Authors: Venter, Nicolaas
- Date: 2015
- Subjects: Aristida , Panicum , Switchgrass , Grasses -- Effect of drought on , Grasses -- Phylogeny , Photosynthesis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4272 , http://hdl.handle.net/10962/d1018549
- Description: Grass species within South Africa show a photosynthetic subtype and phylogenetic response to rainfall gradients, with Panicoideae species (NADP-Me and NAD-Me) inhabiting mesic environments, while Aristidoideae species (NADP-Me) inhabit more arid environments. It is predicted that climate change will alter rainfall patterns within southern Africa, which could have implications for grassland distributions and functional composition. Globally, and in South Africa, species distributions indicates that NAD-Me species have a preference for more arid environments, but this may be complicated by phylogeny as most NAD-Me species belong to the Chloridoideae subfamily. Additionally, differences in the metabolism and energetic requirements of different carboxylation types are expected to confer different ecological advantages, such as drought tolerance, but the role of these different pathways is not well understood. Based on natural distribution and photosynthetic subtype differences, it was hypothesised that Panicoideae NADP-Me species would be less drought tolerant than Panicoideae NAD-Me and Aristidoideae NADP-Me species and that subtypes and lineages would show different drought recovery rates. Furthermore, drought sensitivity would be of a metabolic and not a stomatal origin and plants that maintained favourable leaf water status would be more drought tolerant and recover faster. This was tested experimentally by comparing Panicoideae species (NADP-Me and NAD-Me) and NADP-Me species (Panicoideae and Aristidoideae). Plants were subjected to a progressive 58 day drought period and a recovery phase where gas exchange, chlorophyll fluorescence and leaf water relations were measured at select intervals. In conjunction with this, a rapid drought experiment was performed on Zea mays (NADP-Me: Panicoideae) plants where similar parameters were measured. Photosynthetic drought and recovery responses showed both a subtype and phylogenetic response. Panicoideae species were less drought tolerant than Aristidoideae species, although Panicoideae NAD-Me showed better recovery rates than Panicoideae NADP-Me species, while Aristidoideae species recovered the quickest. Panicoideae NAD-Me and Aristidoideae species maintained higher leaf water status during drought which contributed to the maintenance of PSII integrity and thus facilitated rapid photosynthetic recovery. During drought Panicoideae species showed greater metabolic limitations over Aristidoideae species and for the first time, lower metabolic limitations were associated with osmotic adjustment. This is a novel finding whereby osmotic adjustment and the subsequent maintenance of leaf water are key to preventing metabolic limitations of photosynthesis in C₄ grasses. Results from the Z. mays rapid drought study showed the limitations to photosynthesis were exclusively metabolic and unlikely to be a direct consequence of turgor loss. It was apparent that the response to drought was stronger amongst lineages, as NADP-Me species from different subfamilies showed a significant difference in drought tolerances. Aristidoideae species’ exceptional drought tolerance and predicted increased aridification could favour these species over Panicoideae species under future climates.
- Full Text:
- Date Issued: 2015
- Authors: Venter, Nicolaas
- Date: 2015
- Subjects: Aristida , Panicum , Switchgrass , Grasses -- Effect of drought on , Grasses -- Phylogeny , Photosynthesis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4272 , http://hdl.handle.net/10962/d1018549
- Description: Grass species within South Africa show a photosynthetic subtype and phylogenetic response to rainfall gradients, with Panicoideae species (NADP-Me and NAD-Me) inhabiting mesic environments, while Aristidoideae species (NADP-Me) inhabit more arid environments. It is predicted that climate change will alter rainfall patterns within southern Africa, which could have implications for grassland distributions and functional composition. Globally, and in South Africa, species distributions indicates that NAD-Me species have a preference for more arid environments, but this may be complicated by phylogeny as most NAD-Me species belong to the Chloridoideae subfamily. Additionally, differences in the metabolism and energetic requirements of different carboxylation types are expected to confer different ecological advantages, such as drought tolerance, but the role of these different pathways is not well understood. Based on natural distribution and photosynthetic subtype differences, it was hypothesised that Panicoideae NADP-Me species would be less drought tolerant than Panicoideae NAD-Me and Aristidoideae NADP-Me species and that subtypes and lineages would show different drought recovery rates. Furthermore, drought sensitivity would be of a metabolic and not a stomatal origin and plants that maintained favourable leaf water status would be more drought tolerant and recover faster. This was tested experimentally by comparing Panicoideae species (NADP-Me and NAD-Me) and NADP-Me species (Panicoideae and Aristidoideae). Plants were subjected to a progressive 58 day drought period and a recovery phase where gas exchange, chlorophyll fluorescence and leaf water relations were measured at select intervals. In conjunction with this, a rapid drought experiment was performed on Zea mays (NADP-Me: Panicoideae) plants where similar parameters were measured. Photosynthetic drought and recovery responses showed both a subtype and phylogenetic response. Panicoideae species were less drought tolerant than Aristidoideae species, although Panicoideae NAD-Me showed better recovery rates than Panicoideae NADP-Me species, while Aristidoideae species recovered the quickest. Panicoideae NAD-Me and Aristidoideae species maintained higher leaf water status during drought which contributed to the maintenance of PSII integrity and thus facilitated rapid photosynthetic recovery. During drought Panicoideae species showed greater metabolic limitations over Aristidoideae species and for the first time, lower metabolic limitations were associated with osmotic adjustment. This is a novel finding whereby osmotic adjustment and the subsequent maintenance of leaf water are key to preventing metabolic limitations of photosynthesis in C₄ grasses. Results from the Z. mays rapid drought study showed the limitations to photosynthesis were exclusively metabolic and unlikely to be a direct consequence of turgor loss. It was apparent that the response to drought was stronger amongst lineages, as NADP-Me species from different subfamilies showed a significant difference in drought tolerances. Aristidoideae species’ exceptional drought tolerance and predicted increased aridification could favour these species over Panicoideae species under future climates.
- Full Text:
- Date Issued: 2015
The solubility of mercurous chloride in water at 25°C
- Authors: Clur, Dennis Alwin
- Date: 1959
- Subjects: Mercury compounds -- Solubility , Mercuric chloride
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4522 , http://hdl.handle.net/10962/d1014705
- Description: [From Introduction]. In 1955, Dry and Gledhill, both formerly of this Department, published their paper on the Solubility of Mercurous Chloride in Water at 25°0, and it was originally intended that this thesis should be an extension of the study to cover the temperature range from 5 t o 55°0. A preliminary investigation at 25°0, however, failed to yield results which were consistent with their findings, even though their apparatus and experimental technique were used. In an effort to resolve these difficulties their method of saturating the calomel in the conductance cell was thoroughly investigated, and as this procedure was found to be responsible, it was necessary to evolve an entirely new approach. The technique finally adopted was to saturate the mercurous chloride solutions by mechanical stirring in siliconed vessels and to carry out the conductance, pH, and total mercury concentration measurements on the filter ed solution. This method gave good results, and was free from the many extrapolations prevalent in the original procedure.
- Full Text:
- Date Issued: 1959
- Authors: Clur, Dennis Alwin
- Date: 1959
- Subjects: Mercury compounds -- Solubility , Mercuric chloride
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4522 , http://hdl.handle.net/10962/d1014705
- Description: [From Introduction]. In 1955, Dry and Gledhill, both formerly of this Department, published their paper on the Solubility of Mercurous Chloride in Water at 25°0, and it was originally intended that this thesis should be an extension of the study to cover the temperature range from 5 t o 55°0. A preliminary investigation at 25°0, however, failed to yield results which were consistent with their findings, even though their apparatus and experimental technique were used. In an effort to resolve these difficulties their method of saturating the calomel in the conductance cell was thoroughly investigated, and as this procedure was found to be responsible, it was necessary to evolve an entirely new approach. The technique finally adopted was to saturate the mercurous chloride solutions by mechanical stirring in siliconed vessels and to carry out the conductance, pH, and total mercury concentration measurements on the filter ed solution. This method gave good results, and was free from the many extrapolations prevalent in the original procedure.
- Full Text:
- Date Issued: 1959
Invariant optimal control on the three-dimensional semi-Euclidean group: control affine and quadratic Hamilton-Poisson systems
- Authors: Barrett, Dennis Ian
- Date: 2014
- Subjects: Automorphisms , Symmetry (Mathematics) , Lyapunov stability , Geometry, Riemannian , Geometry, Affine , Elliptic functions
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/64805 , vital:28605
- Description: In this thesis we consider invariant control systems and Hamilton-Poisson systems on the three dimensional semi-Euclidean group SE(1,1). We first classify the left-invariant control affine systems (under detached feedback equivalence). We provide a complete list of normal forms, as well as classifying conditions. As a corollary to this classification, we derive controllability criteria for control affine systems on SE(1,1). Secondly, we consider quadratic Hamilton-Poisson systems on the (minus) Lie-Poisson space se(1,1)*. These systems are classified up to an affine isomorphism. Six normal forms are identified for the homogeneous case, whereas sixteen representatives (including several infinite families) are obtained for the inhomogeneous systems. Thereafter we consider the stability and integration of the normal forms obtained. For all homogeneous systems, and a subclass of inhomogeneous systems, we perform a complete stability analysis and derive explicit expressions for all integral curves. (The extremal controls of a large class of optimal control problems on SE(1,1) are linearly related to these integral curves.) Lastly, we discuss the Riemannian and sub-Riemannian problems. The (left-invariant) Riemannian and sub-Riemannian structures on SE(1,1) are classified, up to isometric group automorphisms and scaling. Explicit expressions for the geodesics of the normalised structures are found.
- Full Text:
- Date Issued: 2014
- Authors: Barrett, Dennis Ian
- Date: 2014
- Subjects: Automorphisms , Symmetry (Mathematics) , Lyapunov stability , Geometry, Riemannian , Geometry, Affine , Elliptic functions
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/64805 , vital:28605
- Description: In this thesis we consider invariant control systems and Hamilton-Poisson systems on the three dimensional semi-Euclidean group SE(1,1). We first classify the left-invariant control affine systems (under detached feedback equivalence). We provide a complete list of normal forms, as well as classifying conditions. As a corollary to this classification, we derive controllability criteria for control affine systems on SE(1,1). Secondly, we consider quadratic Hamilton-Poisson systems on the (minus) Lie-Poisson space se(1,1)*. These systems are classified up to an affine isomorphism. Six normal forms are identified for the homogeneous case, whereas sixteen representatives (including several infinite families) are obtained for the inhomogeneous systems. Thereafter we consider the stability and integration of the normal forms obtained. For all homogeneous systems, and a subclass of inhomogeneous systems, we perform a complete stability analysis and derive explicit expressions for all integral curves. (The extremal controls of a large class of optimal control problems on SE(1,1) are linearly related to these integral curves.) Lastly, we discuss the Riemannian and sub-Riemannian problems. The (left-invariant) Riemannian and sub-Riemannian structures on SE(1,1) are classified, up to isometric group automorphisms and scaling. Explicit expressions for the geodesics of the normalised structures are found.
- Full Text:
- Date Issued: 2014
Thermoluminescence of annealed synthetic quartz
- Atang, Elizabeth Fende Midiki
- Authors: Atang, Elizabeth Fende Midiki
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/420 , vital:19957
- Description: The kinetic and dosimetric features of the main thermoluminescent peak of synthetic quartz have been investigated in quartz ordinarily annealed at 500_C as well as quartz annealed at 500_C for 10 minutes. The main peak is found at 78 _C for the samples annealed at 500_C for 10 minutes irradiated to 10 Gy and heated at 1.0 _C/s. For the samples ordinarily annealed at 500_C the main peak is found at 106 _C after the sample has been irradiated to 30 Gy and heated at 5.0 _C/s. In these samples, the intensity of the main peak is enhanced with repetitive measurement whereas its maximum temperature is unaffected. The peak position of the main peak in the sample is independent of the irradiation dose and this, together with its fading characteristics, are consistent with first-order kinetics. For doses between 5 and 25 Gy, the dose response of the main peak of the annealed sample is superlinear. The half-life of the main TL peak of the annealed sample is about 1 h. The activation energy E of the main peak is around 0.90 eV. For a heating rate of 0.4 _C/s, its order of kinetics b derived from the whole curve method of analysis is 1.0. Following irradiation, preheating and illumination with 470 nm blue light, the main peak in the annealed sample is regenerated during heating. The resulting phototransferred peak occurs at the same temperature as the original peak and has similar kinetic and dosimetric features, with a half-life of about 1 h. For a preheat temperature of 200 _C, the intensity of the phototransferred peak in the sample increases with illumination time up to a maximum and decreases thereafter. At longer illumination times, no further decrease in the intensity of the phototransferred peak is observed. The traps associated with the 325 _C peak are the main source of the electrons responsible for the regenerated peak.
- Full Text:
- Date Issued: 2016
- Authors: Atang, Elizabeth Fende Midiki
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/420 , vital:19957
- Description: The kinetic and dosimetric features of the main thermoluminescent peak of synthetic quartz have been investigated in quartz ordinarily annealed at 500_C as well as quartz annealed at 500_C for 10 minutes. The main peak is found at 78 _C for the samples annealed at 500_C for 10 minutes irradiated to 10 Gy and heated at 1.0 _C/s. For the samples ordinarily annealed at 500_C the main peak is found at 106 _C after the sample has been irradiated to 30 Gy and heated at 5.0 _C/s. In these samples, the intensity of the main peak is enhanced with repetitive measurement whereas its maximum temperature is unaffected. The peak position of the main peak in the sample is independent of the irradiation dose and this, together with its fading characteristics, are consistent with first-order kinetics. For doses between 5 and 25 Gy, the dose response of the main peak of the annealed sample is superlinear. The half-life of the main TL peak of the annealed sample is about 1 h. The activation energy E of the main peak is around 0.90 eV. For a heating rate of 0.4 _C/s, its order of kinetics b derived from the whole curve method of analysis is 1.0. Following irradiation, preheating and illumination with 470 nm blue light, the main peak in the annealed sample is regenerated during heating. The resulting phototransferred peak occurs at the same temperature as the original peak and has similar kinetic and dosimetric features, with a half-life of about 1 h. For a preheat temperature of 200 _C, the intensity of the phototransferred peak in the sample increases with illumination time up to a maximum and decreases thereafter. At longer illumination times, no further decrease in the intensity of the phototransferred peak is observed. The traps associated with the 325 _C peak are the main source of the electrons responsible for the regenerated peak.
- Full Text:
- Date Issued: 2016
The role of ecological processes in structuring reef fish communities in the Agulhas Ecoregion, South Africa
- Authors: Dyer, Alexander
- Date: 2018
- Subjects: Reef fishes -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Ecology -- South Africa -- Agulhas, Cape (Cape) , Marine biodiversity -- South Africa -- Agulhas, Cape (Cape) , Biotic communities -- South Africa -- Agulhas, Cape (Cape) , Sparidae -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Size -- South Africa -- Agulhas, Cape (Cape) , Baited remote underwater stereo-video systems (stereo-BRUVs)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63899 , vital:28504
- Description: Local, niche-based processes, which arise from the interplay between biotic interactions and abiotic constraints are considered to be important regulators of community structure. However, it is increasingly recognised that patterns of diversity can also be strongly influenced by dispersal-driven processes. While empirical research on the diversity of coral reef fishes on shallow tropical reefs has contributed greatly to the development of general concepts in ecology, there have been considerably fewer studies on the processes which shape the diversity of fish communities on shallow (10 - 30 m) and deep (30 - 75 m) rocky reefs. Consequently, it is less clear at which spatial scales niche partitioning and dispersal limitation contribute most strongly to the structure of reef-associated fish communities within rocky reef ecosystems. To address this caveat, research was conducted at four rocky reef complexes within the warm-temperate Agulhas Ecoregion, South Africa. The diversity of reef-associated fishes was sampled by baited remote underwater stereo-video systems (stereo-BRUVs) to incorporate the range of heterogeneous reef habitat in Tsitsikamma National Park Marine Protected Area (TNP MPA) and Algoa Bay (AB). To examine how niche-based and dispersal-driven processes influence patterns of diversity among species within the dominant family of resident fishes, the sparids (Sparidae), components of diversity were quantified at several spatial scales. Turnover in the number of species which locally co-occurred was found to be largely driven by the limited dispersal of species over hundreds of kilometres. When relative species abundances were taken into account, sparid communities were characterised by higher than expected rates of compositional turnover among local habitat patches separated by hundreds to thousands of metres of contiguous reef. Patterns of compositional turnover were associated with the spatial aggregation of conspecifics, particularly at scales which facilitate the post-settlement dispersal of fishes. Niche-based segregation of species along the depth gradient was found to be the primary driver of compositional turnover among both protected and exploited communities. However, spatial structuring within reefs, which was independent of variation in the environment, suggests that compositional differences among communities are also influenced by the limited post-settlement dispersal of resident fishes to adjacent areas during their ontogeny. Together, the results suggest that the diversity of reef-associated sparids is likely to depend both on an adequate diversity of suitable reef habitat and a sufficient degree of spatial connectivity to facilitate ontogenetic habitat shifts. Taxon-based descriptors of diversity do not adequately account for ecological difference among conspecifics within size-structured populations. To test whether differences in body size facilitated coexistence among sparid fishes, the number of species which coexisted at the local scale was related to variation in the size structure of communities. In communities which have been historically protected from fishing, local coexistence between a greater number of species was promoted by reduced levels of intraspecific variation in size of fishes. This suggests that, among species with similar trophic requirements, further niche segregation along a prey-size and body-size gradient is likely to mitigate the direct impacts of competition for shared food resources. Among exploited communities, size structure did not influence the number of species which coexisted at the local scale. This finding suggests that fishing-induced mortality of larger-bodied fishes is likely to remove some of the constraints to colonisation which arise from asymmetries in competitive fitness between small and large-bodied fishes. Together, these results highlight the importance of post-settlement processes and population size structure to the maintenance of reef-associated fish diversity within contiguous rocky reef habitats.
- Full Text:
- Date Issued: 2018
- Authors: Dyer, Alexander
- Date: 2018
- Subjects: Reef fishes -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Ecology -- South Africa -- Agulhas, Cape (Cape) , Marine biodiversity -- South Africa -- Agulhas, Cape (Cape) , Biotic communities -- South Africa -- Agulhas, Cape (Cape) , Sparidae -- South Africa -- Agulhas, Cape (Cape) , Reef fishes -- Size -- South Africa -- Agulhas, Cape (Cape) , Baited remote underwater stereo-video systems (stereo-BRUVs)
- Language: English
- Type: text , Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/63899 , vital:28504
- Description: Local, niche-based processes, which arise from the interplay between biotic interactions and abiotic constraints are considered to be important regulators of community structure. However, it is increasingly recognised that patterns of diversity can also be strongly influenced by dispersal-driven processes. While empirical research on the diversity of coral reef fishes on shallow tropical reefs has contributed greatly to the development of general concepts in ecology, there have been considerably fewer studies on the processes which shape the diversity of fish communities on shallow (10 - 30 m) and deep (30 - 75 m) rocky reefs. Consequently, it is less clear at which spatial scales niche partitioning and dispersal limitation contribute most strongly to the structure of reef-associated fish communities within rocky reef ecosystems. To address this caveat, research was conducted at four rocky reef complexes within the warm-temperate Agulhas Ecoregion, South Africa. The diversity of reef-associated fishes was sampled by baited remote underwater stereo-video systems (stereo-BRUVs) to incorporate the range of heterogeneous reef habitat in Tsitsikamma National Park Marine Protected Area (TNP MPA) and Algoa Bay (AB). To examine how niche-based and dispersal-driven processes influence patterns of diversity among species within the dominant family of resident fishes, the sparids (Sparidae), components of diversity were quantified at several spatial scales. Turnover in the number of species which locally co-occurred was found to be largely driven by the limited dispersal of species over hundreds of kilometres. When relative species abundances were taken into account, sparid communities were characterised by higher than expected rates of compositional turnover among local habitat patches separated by hundreds to thousands of metres of contiguous reef. Patterns of compositional turnover were associated with the spatial aggregation of conspecifics, particularly at scales which facilitate the post-settlement dispersal of fishes. Niche-based segregation of species along the depth gradient was found to be the primary driver of compositional turnover among both protected and exploited communities. However, spatial structuring within reefs, which was independent of variation in the environment, suggests that compositional differences among communities are also influenced by the limited post-settlement dispersal of resident fishes to adjacent areas during their ontogeny. Together, the results suggest that the diversity of reef-associated sparids is likely to depend both on an adequate diversity of suitable reef habitat and a sufficient degree of spatial connectivity to facilitate ontogenetic habitat shifts. Taxon-based descriptors of diversity do not adequately account for ecological difference among conspecifics within size-structured populations. To test whether differences in body size facilitated coexistence among sparid fishes, the number of species which coexisted at the local scale was related to variation in the size structure of communities. In communities which have been historically protected from fishing, local coexistence between a greater number of species was promoted by reduced levels of intraspecific variation in size of fishes. This suggests that, among species with similar trophic requirements, further niche segregation along a prey-size and body-size gradient is likely to mitigate the direct impacts of competition for shared food resources. Among exploited communities, size structure did not influence the number of species which coexisted at the local scale. This finding suggests that fishing-induced mortality of larger-bodied fishes is likely to remove some of the constraints to colonisation which arise from asymmetries in competitive fitness between small and large-bodied fishes. Together, these results highlight the importance of post-settlement processes and population size structure to the maintenance of reef-associated fish diversity within contiguous rocky reef habitats.
- Full Text:
- Date Issued: 2018
Strike comparison of the compositional variations of the lower group and middle group chromitite seams of the critical zone, Western Bushveld complex
- Authors: Doig, Heather Leslie
- Date: 2000
- Subjects: Chromite -- South Africa , Geology -- South Africa , Mineralogy -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5005 , http://hdl.handle.net/10962/d1005618
- Description: The variations in the composition, specifically the Cr20 S content and the Cr:Fe ratio, and the morphology of the Lower Group (LG) and Middle Group (MG) chromitite seams of the Critical Zone (CZ) across the western Bushveld Complex, including the Ruighoek and Brits sections, is investigated by means of whole-rock chemical data, both major and trace elements analysis, XRD and electron microprobe data. As a result ofthe paucity of exposed or developed LG1 - LG5 chromitite seams in the western Bushveld Complex, this study is confined to the investigation of the compositional variations of the LG6 to MG4 chromitite seams. In only one section, the Ruighoek section, was the entire succession of chromitite seams, from the LG1 - MG4, exposed. The silicate host rocks from the LG6 pyroxenite footwall to the collar of the CC2 drillcore (lower uCZ) in the Rustenburg section were sampled. This study reviews the compositional trends of the silicate host rocks, as the compositional variations of the chromitite seams reflect the chemical evolution of the host cumulate environment and, to a lesser degree, the composition onhe interstitial mineral phases in the chromitite seams. The compositional variations of the LG and MG chromitite seams are attributed to the compositional contrast between the replenishing magma and the resident magma. The chemical trends of the LG and MG chromitite layers and the host cumUlate rOCKS do not support the existence of two compositionalfy dissimilar magmas in the CZ, rather the cyclic layering of the CZ and the chemical variations of the chromitite seams are attributed to the mixing of primitive magma with the resident magma, both of which have essentially similar compositions. The compositional variations of the LG and MG chromitite seams along strike away from the supposed feeder site (Union section) to the distal facies (Brits section) are attributed to the advanced compositional contrast between the resident magma and the replenishing primitive magma pulses. The CZ is characterized by reversals in fractionation trends and this is attributed to the compositional evolution of the parental magma and not to the replenishment of the resident magma by influxes of grossly dissimilar magma compositions. The Cr20 S content and the Cr:Fe ratio of the MG chromitite layers increase from the Ruighoek (near proximal) section to the Brits section (distal facies). This is attributed to the advanced compositional contrasts between the resident magma and the replenishing primitive magma. In contrast, the Cr20 3 content and Cr:Fe ratios ofthe LG6 and LG8a chromitite seams decreases eastwards from the Ruighoek section. The average Cr:Fe ratio for the western Bushveld Complex is between 1.5 and\2.0, nonetheless, a progressively lower Cr:Fe ratio is noted from the LG1 chromitite up through to the MG4 chromitite seam in the Ruighoek section. tn the LG2 - LG4 chromitite interval a deviation to higher.lratios is encountered. A progressive substitution of Cr by AT and Fe in the Cr-spinel crystal lattice characterizes the chromitite succession from the LG1 seam up through the chromitite succession to MG4. The petrogeneSiS of the chromitite seams of the CZ is attributed to magma mixing and fractional crystallization of a single magma type.
- Full Text:
- Date Issued: 2000
- Authors: Doig, Heather Leslie
- Date: 2000
- Subjects: Chromite -- South Africa , Geology -- South Africa , Mineralogy -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5005 , http://hdl.handle.net/10962/d1005618
- Description: The variations in the composition, specifically the Cr20 S content and the Cr:Fe ratio, and the morphology of the Lower Group (LG) and Middle Group (MG) chromitite seams of the Critical Zone (CZ) across the western Bushveld Complex, including the Ruighoek and Brits sections, is investigated by means of whole-rock chemical data, both major and trace elements analysis, XRD and electron microprobe data. As a result ofthe paucity of exposed or developed LG1 - LG5 chromitite seams in the western Bushveld Complex, this study is confined to the investigation of the compositional variations of the LG6 to MG4 chromitite seams. In only one section, the Ruighoek section, was the entire succession of chromitite seams, from the LG1 - MG4, exposed. The silicate host rocks from the LG6 pyroxenite footwall to the collar of the CC2 drillcore (lower uCZ) in the Rustenburg section were sampled. This study reviews the compositional trends of the silicate host rocks, as the compositional variations of the chromitite seams reflect the chemical evolution of the host cumulate environment and, to a lesser degree, the composition onhe interstitial mineral phases in the chromitite seams. The compositional variations of the LG and MG chromitite seams are attributed to the compositional contrast between the replenishing magma and the resident magma. The chemical trends of the LG and MG chromitite layers and the host cumUlate rOCKS do not support the existence of two compositionalfy dissimilar magmas in the CZ, rather the cyclic layering of the CZ and the chemical variations of the chromitite seams are attributed to the mixing of primitive magma with the resident magma, both of which have essentially similar compositions. The compositional variations of the LG and MG chromitite seams along strike away from the supposed feeder site (Union section) to the distal facies (Brits section) are attributed to the advanced compositional contrast between the resident magma and the replenishing primitive magma pulses. The CZ is characterized by reversals in fractionation trends and this is attributed to the compositional evolution of the parental magma and not to the replenishment of the resident magma by influxes of grossly dissimilar magma compositions. The Cr20 S content and the Cr:Fe ratio of the MG chromitite layers increase from the Ruighoek (near proximal) section to the Brits section (distal facies). This is attributed to the advanced compositional contrasts between the resident magma and the replenishing primitive magma. In contrast, the Cr20 3 content and Cr:Fe ratios ofthe LG6 and LG8a chromitite seams decreases eastwards from the Ruighoek section. The average Cr:Fe ratio for the western Bushveld Complex is between 1.5 and\2.0, nonetheless, a progressively lower Cr:Fe ratio is noted from the LG1 chromitite up through to the MG4 chromitite seam in the Ruighoek section. tn the LG2 - LG4 chromitite interval a deviation to higher.lratios is encountered. A progressive substitution of Cr by AT and Fe in the Cr-spinel crystal lattice characterizes the chromitite succession from the LG1 seam up through the chromitite succession to MG4. The petrogeneSiS of the chromitite seams of the CZ is attributed to magma mixing and fractional crystallization of a single magma type.
- Full Text:
- Date Issued: 2000
A geohydrological evaluation of the coastal area between Bushmans River Mouth and Cape Mouth and Cape Padrone, Eastern Cape, South Africa
- Authors: Jolly, J L
- Date: 1984 , 2013-03-15
- Subjects: Hydrogeology -- South Africa -- Eastern Cape , Coastal zone management -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4859 , http://hdl.handle.net/10962/d1005635 , Hydrogeology -- South Africa -- Eastern Cape , Coastal zone management -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape
- Full Text:
- Date Issued: 1984
- Authors: Jolly, J L
- Date: 1984 , 2013-03-15
- Subjects: Hydrogeology -- South Africa -- Eastern Cape , Coastal zone management -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4859 , http://hdl.handle.net/10962/d1005635 , Hydrogeology -- South Africa -- Eastern Cape , Coastal zone management -- South Africa -- Eastern Cape , Coastal ecology -- South Africa -- Eastern Cape
- Full Text:
- Date Issued: 1984
An investigation into the effect of particulate solids on certain antimicrobial preservatives in pharmaceutical and cosmetic suspensions
- Authors: Horn, Norman Robert
- Date: 1978
- Subjects: Drugs -- Preservation , Drugs -- Microbiology , Cosmetics -- Preservation , Cosmetics -- Microbiology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3848 , http://hdl.handle.net/10962/d1012436 , Drugs -- Preservation , Drugs -- Microbiology , Cosmetics -- Preservation , Cosmetics -- Microbiology
- Description: Pharmaceutical and cosmetic preparations must be formulated so as to assure elegance of appearance, efficacy of ingredients and a satisfactory shelf life as the product. If the formulation is not self-preserving and if it contains material which could act as a substrate for growth of micro-organisms, the shelf life aspect involves, in addition to several other factors, the choice of a suitable antimicrobial preservative. Such preservatives, when present in the minimum effective concentration, are unfortunately prone to interact with many other materials. A number of papers on the inactivation of preservatives by containers, filters and formulation components have been published. The field has been adequately reviewed by de Navarre (1962), Wedderburn (1964) and, more recently, by Coates (1973). From these reviews and from a study of the literature it became apparent that relatively little work had been done on interactions between preservatives and solid particles in aqueous suspension. Consequently, a range of preservatives not previously investigated in this respect was tested for loss of activity in the presence of fifteen powders commonly used in aqueous suspension in pharmaceutical and cosmetic formulations. In view of the information obtained in this preliminary study and after the development of more satisfactory analytical techniques it was decided to study in greater depth the interaction between these powders and selected organomercurials and quaternary ammonium compounds.
- Full Text:
- Date Issued: 1978
- Authors: Horn, Norman Robert
- Date: 1978
- Subjects: Drugs -- Preservation , Drugs -- Microbiology , Cosmetics -- Preservation , Cosmetics -- Microbiology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3848 , http://hdl.handle.net/10962/d1012436 , Drugs -- Preservation , Drugs -- Microbiology , Cosmetics -- Preservation , Cosmetics -- Microbiology
- Description: Pharmaceutical and cosmetic preparations must be formulated so as to assure elegance of appearance, efficacy of ingredients and a satisfactory shelf life as the product. If the formulation is not self-preserving and if it contains material which could act as a substrate for growth of micro-organisms, the shelf life aspect involves, in addition to several other factors, the choice of a suitable antimicrobial preservative. Such preservatives, when present in the minimum effective concentration, are unfortunately prone to interact with many other materials. A number of papers on the inactivation of preservatives by containers, filters and formulation components have been published. The field has been adequately reviewed by de Navarre (1962), Wedderburn (1964) and, more recently, by Coates (1973). From these reviews and from a study of the literature it became apparent that relatively little work had been done on interactions between preservatives and solid particles in aqueous suspension. Consequently, a range of preservatives not previously investigated in this respect was tested for loss of activity in the presence of fifteen powders commonly used in aqueous suspension in pharmaceutical and cosmetic formulations. In view of the information obtained in this preliminary study and after the development of more satisfactory analytical techniques it was decided to study in greater depth the interaction between these powders and selected organomercurials and quaternary ammonium compounds.
- Full Text:
- Date Issued: 1978
Effects of sustained elevated CO₂ concentration on two cultivars of barley (Hordeum vulgare L.)
- Authors: Siphugu, Mashudu Victor
- Date: 1997
- Subjects: Barley Barley -- Growth Photosynthesis -- Research Plants -- Effect of carbon dioxide on
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4226 , http://hdl.handle.net/10962/d1003795
- Description: The enormous burning of fossil fuel and deforestation have caused an increase in the atmospheric CO₂ concentration ([CO₂]) during the last century. This will invariably have profound direct and indirect effects on plant carbon metabolism. The majority of research on the effects of CO₂ enrichment on plants are short-term and are done on other crops, but very little have been done on barley. This project aimed to determine the effects of long-term CO₂ enrichment on photosynthesis, growth and grain yield on barley. Hordeum vulgare L. cvs Stirling and Schooner plants were grown from seeds in controlled environment chambers at ambient (350) and elevated (600) μmol molˉ¹ [CO₂]. Measurements of net assimilation rate (NAR), photosynthetic pigments content and growth parameters were started 7 days after germination (DAG) and continued until senescence. The anatomy of matured fully developed leaves was also monitored. Elevated [CO₂l resulted in an increase in NAR in the two cultivars from days 7 until 14, after which the stimulation of NAR of CO₂-enriched plants started to decrease. At the onset of senescence, NAR was almost equal in plants grown under both ambient and elevated [CO₂]. The response of assimilation as a function of internal [CO₂l (C₁) at the end of the experimental period showed a significant decrease in both the initial slope of the A/C₁ curves and the CO₂-saturated photosynthetic rates in the two cultivars. Stirling showed no significant changes in the content of chlorophyll α,chlorophyll б or in total carotenoids. However, Schooner showed a stimulation in chlorophyll α content at day 7, but decreased at day 28. Chlorophyll б and total carotenoids content were not affected by CO₂ enrichment. While total above-ground biomass was not affected by elevated [CO₂] in the two cultivars, total plant height decreased significantly after 14 days in Stirling whereas no significant change occurred in Schooner throughout the experimental period. Leaf area was not significantly affected by CO₂ enrichment in the two cultivars although the leaves in CO₂ enriched plants were slightly shorter. Anatomical studies reveal that leaf thickness was significantly increased by CO₂ enrichment in Stirling, but the increase was not significant in Schooner. Both cultivars did not show any significant effect on chloroplast morphology and ultrastructure as a consequence of elevated CO₂ exposure. No signs of starch accumulation were evident in variety Schooner, but Stirling showed some form of starch accumulation, under increased atmospheric [CO₂]. Elevated CO₂ resulted in a significant reduction by more than 50 % in the number of grain yield per plant in both Stirling and Schooner. Results from this study therefore indicate that CO₂ enrichment will not be beneficial in terms of growth and yield in this important crop.
- Full Text:
- Date Issued: 1997
- Authors: Siphugu, Mashudu Victor
- Date: 1997
- Subjects: Barley Barley -- Growth Photosynthesis -- Research Plants -- Effect of carbon dioxide on
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4226 , http://hdl.handle.net/10962/d1003795
- Description: The enormous burning of fossil fuel and deforestation have caused an increase in the atmospheric CO₂ concentration ([CO₂]) during the last century. This will invariably have profound direct and indirect effects on plant carbon metabolism. The majority of research on the effects of CO₂ enrichment on plants are short-term and are done on other crops, but very little have been done on barley. This project aimed to determine the effects of long-term CO₂ enrichment on photosynthesis, growth and grain yield on barley. Hordeum vulgare L. cvs Stirling and Schooner plants were grown from seeds in controlled environment chambers at ambient (350) and elevated (600) μmol molˉ¹ [CO₂]. Measurements of net assimilation rate (NAR), photosynthetic pigments content and growth parameters were started 7 days after germination (DAG) and continued until senescence. The anatomy of matured fully developed leaves was also monitored. Elevated [CO₂l resulted in an increase in NAR in the two cultivars from days 7 until 14, after which the stimulation of NAR of CO₂-enriched plants started to decrease. At the onset of senescence, NAR was almost equal in plants grown under both ambient and elevated [CO₂]. The response of assimilation as a function of internal [CO₂l (C₁) at the end of the experimental period showed a significant decrease in both the initial slope of the A/C₁ curves and the CO₂-saturated photosynthetic rates in the two cultivars. Stirling showed no significant changes in the content of chlorophyll α,chlorophyll б or in total carotenoids. However, Schooner showed a stimulation in chlorophyll α content at day 7, but decreased at day 28. Chlorophyll б and total carotenoids content were not affected by CO₂ enrichment. While total above-ground biomass was not affected by elevated [CO₂] in the two cultivars, total plant height decreased significantly after 14 days in Stirling whereas no significant change occurred in Schooner throughout the experimental period. Leaf area was not significantly affected by CO₂ enrichment in the two cultivars although the leaves in CO₂ enriched plants were slightly shorter. Anatomical studies reveal that leaf thickness was significantly increased by CO₂ enrichment in Stirling, but the increase was not significant in Schooner. Both cultivars did not show any significant effect on chloroplast morphology and ultrastructure as a consequence of elevated CO₂ exposure. No signs of starch accumulation were evident in variety Schooner, but Stirling showed some form of starch accumulation, under increased atmospheric [CO₂]. Elevated CO₂ resulted in a significant reduction by more than 50 % in the number of grain yield per plant in both Stirling and Schooner. Results from this study therefore indicate that CO₂ enrichment will not be beneficial in terms of growth and yield in this important crop.
- Full Text:
- Date Issued: 1997
Metallogenetic evolution of the Canadian Cordilleran Orogen
- Authors: Mathe, H L M
- Date: 1983
- Subjects: Orogeny -- Canadian Cordillera , Plate tectonics -- Canadian Cordillera , Metallogeny -- Canadian Cordillera , Geology, Structural -- Canadian Cordillera
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5025 , http://hdl.handle.net/10962/d1006890
- Description: From Introduction: The Canadian Cordilleran Orogenic Belt forms part of the circum-Pacific orogenic zone. It underlies an area of about 1,54 million sq. kilometres, is over 2400 kilometres long and 800 kilometres wide. The region is characteristically mountainous, much of it glaciated and alpine, containing plateaux, trenches, valleys, and fjords. The mountains, in general, rise to elevations between 2100 m and 3600 m above sea level, although Mount Logan in the St. Elias Mountains attains an altitude of 6000 m. The Canadian Cordillera is divided into two dominant orogenic belts: the eastern Columbian Orogenic Belt comprising defonned miogeosynclinal rocks and the western Pacific Orogenic Belt comprising allochthonous eugeosynclinal rocks. The Cordillera is further subdivided into five longitudinal tectonic belts within which rocks are broadly similar in type, age, and history. These belts are, from east to west: the Rocky Mountain Belt, the Omineca Crystalline Belt, the Intermontane Belt, the Coast Plutonic Complex, and the Insular Belt (Wheeler et al., 1972a). The Canadian Cordillera is important in that it contains: one of the world's largest lead-zinc-silver mine, Sullivan; the second-largest molybdenum mine, Endako; one of the most important concentrations of porphyry copper deposits, Highland Valley; Canada's largest tungsten mines, Cantung and Mactung; and Canada's second-largest silver district, Keno Hill (Sutherland Brown et a1., 1971). In addition, it contains several large massive sulphide and lead-zinc deposits.
- Full Text:
- Date Issued: 1983
- Authors: Mathe, H L M
- Date: 1983
- Subjects: Orogeny -- Canadian Cordillera , Plate tectonics -- Canadian Cordillera , Metallogeny -- Canadian Cordillera , Geology, Structural -- Canadian Cordillera
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5025 , http://hdl.handle.net/10962/d1006890
- Description: From Introduction: The Canadian Cordilleran Orogenic Belt forms part of the circum-Pacific orogenic zone. It underlies an area of about 1,54 million sq. kilometres, is over 2400 kilometres long and 800 kilometres wide. The region is characteristically mountainous, much of it glaciated and alpine, containing plateaux, trenches, valleys, and fjords. The mountains, in general, rise to elevations between 2100 m and 3600 m above sea level, although Mount Logan in the St. Elias Mountains attains an altitude of 6000 m. The Canadian Cordillera is divided into two dominant orogenic belts: the eastern Columbian Orogenic Belt comprising defonned miogeosynclinal rocks and the western Pacific Orogenic Belt comprising allochthonous eugeosynclinal rocks. The Cordillera is further subdivided into five longitudinal tectonic belts within which rocks are broadly similar in type, age, and history. These belts are, from east to west: the Rocky Mountain Belt, the Omineca Crystalline Belt, the Intermontane Belt, the Coast Plutonic Complex, and the Insular Belt (Wheeler et al., 1972a). The Canadian Cordillera is important in that it contains: one of the world's largest lead-zinc-silver mine, Sullivan; the second-largest molybdenum mine, Endako; one of the most important concentrations of porphyry copper deposits, Highland Valley; Canada's largest tungsten mines, Cantung and Mactung; and Canada's second-largest silver district, Keno Hill (Sutherland Brown et a1., 1971). In addition, it contains several large massive sulphide and lead-zinc deposits.
- Full Text:
- Date Issued: 1983