Metallophthalocyanines as electrocatalysts and superoxide dismutase mimics
- Authors: Matemadombo, Fungisai
- Date: 2010
- Subjects: Mimicry (Chemistry) Electrocatalysis Superoxide dismutase Electrochemistry Phthalocyanines
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4325 , http://hdl.handle.net/10962/d1004985
- Description: Syntheses, spectral, electrochemical, and spectroelectrochemical studies of iron, cobalt, and manganese phthalocyanines are reported. The novel coordination of cobalt tetracarboxy metallophthalocyanine to an electrode premodified with aryl radicals and its use in the detection of thiocyanate are reported. This work describes the catalytic activity of cobalt phthalocyanine (CoPc) derivatives adsorbed onto glassy carbon electrodes for the electrocatalytical detection of nitrite, Lcysteine, and melatonin. The modified electrodes efficiently detected nitrite. The CoPc derivative modified electrodes proficiently detected L-cysteine whereas an un-modified electrode could not. This work presents the innovative electrochemical detection of melatonin using electrodes adsorbed with CoPc derivatives. These electrodes detected melatonin at more favorable electrochemical parameters relative to an un-modified gold electrode. The limits of melatonin detection of the modified electrodes lay in the 10⁻⁷ to 10⁻⁶ M region. The modified electrodes accurately detected capsule melatonin concentrations as specified by the supplier and could differentiate between a mixture of melatonin, tryptophan, and ascorbic acid. They reliably detected nitrite, L-cysteine, and melatonin in the 10⁻⁴ to 10⁻² M region. Metallophthalocyanine complexes substituted with thio groups were employed as self assembled monolayers (SAMs). Voltammetry, impedance, atomic force microscopy, and scanning electrochemical microscopy proved that the SAMs all act as selective and efficient barriers to ion permeability. All the SAMs in this work can be used as effective electrochemical sensors of nitrite and L-cysteine in the 10⁻⁴ to 10⁻² M region with competitive limits of detection whereas an un-modified electrode cannot detect Lcysteine. The manganese phthalocyanine SAM modified electrodes are arguably better nitrite and L-cysteine electrocatalysts relative to their iron and cobalt counterparts. Manganese phthalocyanines were used as superoxide dismutase (SOD) mimics. All manganese phthalocyanine complexes in this work acted as SOD mimics in an enzymatic system of superoxide production. From cellular studies, complexes 6d, 6e, 8d, 8e act as intracellular SOD mimics and are without significantly high cellular toxicity.
- Full Text:
- Date Issued: 2010
- Authors: Matemadombo, Fungisai
- Date: 2010
- Subjects: Mimicry (Chemistry) Electrocatalysis Superoxide dismutase Electrochemistry Phthalocyanines
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4325 , http://hdl.handle.net/10962/d1004985
- Description: Syntheses, spectral, electrochemical, and spectroelectrochemical studies of iron, cobalt, and manganese phthalocyanines are reported. The novel coordination of cobalt tetracarboxy metallophthalocyanine to an electrode premodified with aryl radicals and its use in the detection of thiocyanate are reported. This work describes the catalytic activity of cobalt phthalocyanine (CoPc) derivatives adsorbed onto glassy carbon electrodes for the electrocatalytical detection of nitrite, Lcysteine, and melatonin. The modified electrodes efficiently detected nitrite. The CoPc derivative modified electrodes proficiently detected L-cysteine whereas an un-modified electrode could not. This work presents the innovative electrochemical detection of melatonin using electrodes adsorbed with CoPc derivatives. These electrodes detected melatonin at more favorable electrochemical parameters relative to an un-modified gold electrode. The limits of melatonin detection of the modified electrodes lay in the 10⁻⁷ to 10⁻⁶ M region. The modified electrodes accurately detected capsule melatonin concentrations as specified by the supplier and could differentiate between a mixture of melatonin, tryptophan, and ascorbic acid. They reliably detected nitrite, L-cysteine, and melatonin in the 10⁻⁴ to 10⁻² M region. Metallophthalocyanine complexes substituted with thio groups were employed as self assembled monolayers (SAMs). Voltammetry, impedance, atomic force microscopy, and scanning electrochemical microscopy proved that the SAMs all act as selective and efficient barriers to ion permeability. All the SAMs in this work can be used as effective electrochemical sensors of nitrite and L-cysteine in the 10⁻⁴ to 10⁻² M region with competitive limits of detection whereas an un-modified electrode cannot detect Lcysteine. The manganese phthalocyanine SAM modified electrodes are arguably better nitrite and L-cysteine electrocatalysts relative to their iron and cobalt counterparts. Manganese phthalocyanines were used as superoxide dismutase (SOD) mimics. All manganese phthalocyanine complexes in this work acted as SOD mimics in an enzymatic system of superoxide production. From cellular studies, complexes 6d, 6e, 8d, 8e act as intracellular SOD mimics and are without significantly high cellular toxicity.
- Full Text:
- Date Issued: 2010
Multilingualism and ICT education at Rhodes University: an exploratory study
- Authors: Dalvit, Lorenzo
- Date: 2010
- Subjects: Educational technology -- South Africa Educational equalization -- South Africa Digital divide -- South Africa Information technology -- Social aspects -- South Africa Educational innovations Information technology -- Study and teaching Language and education -- South Africa Native language and education -- South Africa Rhodes University -- Students -- Attitudes Computer science -- Study and teaching (Higher)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1673 , http://hdl.handle.net/10962/d1003556
- Description: In South Africa, the linguistic hegemony of English over the African languages in the academic field reproduces unequal power relationships between their speakers. The present study shows that an intervention shaped by a counterhegemonic ideology can change the attitudes of Black university students, key players in spearheading social change. Usign statistical analysis and survey methodologies, this research explored the hegemonic role of English as the only language of learning and teaching (LoLT) in the discipline of Computer Science (CS) at Rhodes University. The study found that those speakers of an African language who are the most disadvantaged by the use of English as LoLT are also the most likely to resist a more extensive use of their mother tongue as an alternative. A group of such students were involved in the development and use of an online glossary of CS terms translated, explained and exemplified in an African language (isiXhosa). This experience increased the support for the use of African languages as additional LoLT, even in the Englishdominated field of study of Computer Science. This is an initial step towards promoting linguistic equality between English and African languages and social equality between their speakers.
- Full Text:
- Date Issued: 2010
- Authors: Dalvit, Lorenzo
- Date: 2010
- Subjects: Educational technology -- South Africa Educational equalization -- South Africa Digital divide -- South Africa Information technology -- Social aspects -- South Africa Educational innovations Information technology -- Study and teaching Language and education -- South Africa Native language and education -- South Africa Rhodes University -- Students -- Attitudes Computer science -- Study and teaching (Higher)
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1673 , http://hdl.handle.net/10962/d1003556
- Description: In South Africa, the linguistic hegemony of English over the African languages in the academic field reproduces unequal power relationships between their speakers. The present study shows that an intervention shaped by a counterhegemonic ideology can change the attitudes of Black university students, key players in spearheading social change. Usign statistical analysis and survey methodologies, this research explored the hegemonic role of English as the only language of learning and teaching (LoLT) in the discipline of Computer Science (CS) at Rhodes University. The study found that those speakers of an African language who are the most disadvantaged by the use of English as LoLT are also the most likely to resist a more extensive use of their mother tongue as an alternative. A group of such students were involved in the development and use of an online glossary of CS terms translated, explained and exemplified in an African language (isiXhosa). This experience increased the support for the use of African languages as additional LoLT, even in the Englishdominated field of study of Computer Science. This is an initial step towards promoting linguistic equality between English and African languages and social equality between their speakers.
- Full Text:
- Date Issued: 2010
Neurocognitive and symptom profiles of concussed and nonconcussed provincial rugby players over one season
- Authors: Clark, Susan Beverley
- Date: 2010
- Subjects: Rugby football injuries Brain -- Concussion -- Complications Head -- Wounds and injuries -- Complications Sports injuries -- Psychological aspects Brain damage Neuropsychological tests Rugby Union football players
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2950 , http://hdl.handle.net/10962/d1002459
- Description: Neurocognitive and symptom profiles of concussed and nonconcussed adult provincial rugby union players were investigated over one rugby season, including early season (baseline), intermittent postconcussion, and end of season testing. In a non-equivalent quasi-experimental design, nonconcussed (n = 54) and concussed (n = 17) rugby groups were compared with demographically equivalent noncontact sport controls (n = 37, and n = 17, respectively). Measures included the ImPACT cognitive and symptom composites, and the WMS-III Visual Reproduction and Verbal Paired Associates subtests. The independent and dependent comparative analyses in respect of both nonconcussed and concussed groups, provided cross-validation of poorer acute and/or chronic neuropsychological outcomes for the rugby groups on the ImPACT Reaction Time, Visual Motor Speed, Impulse Control and Symptom composites, and the WMS-III Verbal Paired Associates. The finding of significantly poorer scores on Verbal Paired Associates up to 24 days post concussion for the rugby players versus controls, was longer than the 7 – 10 day recovery period frequently cited in the literature. The overall implication of the study is that even in a group with high cognitive reserve such as these provincial level athletes, there may be prolonged acute recovery, as well as permanent deleterious neuropsychological consequences of cumulative concussive injury in association with a sport such as rugby. Accordingly, the move towards careful individualised postconcussion monitoring of neurocognitive functioning is endorsed, including early identification of any significant permanent reductions in cognitive reserve. Sensitivity of the ImPACT test might be enhanced via inclusion of a verbal associate learning task.
- Full Text:
- Date Issued: 2010
- Authors: Clark, Susan Beverley
- Date: 2010
- Subjects: Rugby football injuries Brain -- Concussion -- Complications Head -- Wounds and injuries -- Complications Sports injuries -- Psychological aspects Brain damage Neuropsychological tests Rugby Union football players
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2950 , http://hdl.handle.net/10962/d1002459
- Description: Neurocognitive and symptom profiles of concussed and nonconcussed adult provincial rugby union players were investigated over one rugby season, including early season (baseline), intermittent postconcussion, and end of season testing. In a non-equivalent quasi-experimental design, nonconcussed (n = 54) and concussed (n = 17) rugby groups were compared with demographically equivalent noncontact sport controls (n = 37, and n = 17, respectively). Measures included the ImPACT cognitive and symptom composites, and the WMS-III Visual Reproduction and Verbal Paired Associates subtests. The independent and dependent comparative analyses in respect of both nonconcussed and concussed groups, provided cross-validation of poorer acute and/or chronic neuropsychological outcomes for the rugby groups on the ImPACT Reaction Time, Visual Motor Speed, Impulse Control and Symptom composites, and the WMS-III Verbal Paired Associates. The finding of significantly poorer scores on Verbal Paired Associates up to 24 days post concussion for the rugby players versus controls, was longer than the 7 – 10 day recovery period frequently cited in the literature. The overall implication of the study is that even in a group with high cognitive reserve such as these provincial level athletes, there may be prolonged acute recovery, as well as permanent deleterious neuropsychological consequences of cumulative concussive injury in association with a sport such as rugby. Accordingly, the move towards careful individualised postconcussion monitoring of neurocognitive functioning is endorsed, including early identification of any significant permanent reductions in cognitive reserve. Sensitivity of the ImPACT test might be enhanced via inclusion of a verbal associate learning task.
- Full Text:
- Date Issued: 2010
Photophysiochemical studies of d¹⁰ metallophthalocyanines and their interaction with nanoparticles
- Chidawanyika, Wadzanai Janet Upenyu
- Authors: Chidawanyika, Wadzanai Janet Upenyu
- Date: 2010
- Subjects: Nanoparticles Phthalocyanines Photochemistry Electrochemistry
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4335 , http://hdl.handle.net/10962/d1004996
- Description: The syntheses, extensive spectroscopic characterization, photophysical and photochemical studies have been conducted for a variation of d10 metallophthaloycanines (MPcs). Comparisons have been made taking into consideration the nfluence of the central metal ion, solvent properties, substituent type and position. Coordination to heavy central metals i.e. Hg gives enhanced triplet state properties. Low symmetry metallophthalocyanine complexes were similarly haracterized and the influence of nteractions with nanoparticles on their photophysical and photochemical properties determined. The MPcs have been linked and adsorbed or mixed with nanoparticles i.e. hemically functionalized single-walled carbon nanotubes SWCNT) and mercaptocarboxylic acid capped CdTe quantum dots (QDs) and changes in the spectra accounted for with respect to the proposed conjugate structures. Distinct differences ccur for linked and adsorbed or mixed conjugates in the bsorption, infrared (IR) and Raman spectra and for thermal ravimetric decay profiles, suggesting successful formation f covalent bonds (linked) and point to structurally ifferent materials. SWCNT quench MPc fluorescence by a photoinduced electron transfer mediated process to give low fluorescence quantum yields. The QDs were used as energy transfer donors and facilitate energy transfer, through Förster resonance energy transfer (FRET) from the QDs to the MPcs. Improved FRET efficiencies were found for linked MPc-QD conjugates relative to the mixed species. Photophysicochemical properties of MPcs were, in general, improved as a result of interactions with nanoparticles.
- Full Text:
- Date Issued: 2010
- Authors: Chidawanyika, Wadzanai Janet Upenyu
- Date: 2010
- Subjects: Nanoparticles Phthalocyanines Photochemistry Electrochemistry
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4335 , http://hdl.handle.net/10962/d1004996
- Description: The syntheses, extensive spectroscopic characterization, photophysical and photochemical studies have been conducted for a variation of d10 metallophthaloycanines (MPcs). Comparisons have been made taking into consideration the nfluence of the central metal ion, solvent properties, substituent type and position. Coordination to heavy central metals i.e. Hg gives enhanced triplet state properties. Low symmetry metallophthalocyanine complexes were similarly haracterized and the influence of nteractions with nanoparticles on their photophysical and photochemical properties determined. The MPcs have been linked and adsorbed or mixed with nanoparticles i.e. hemically functionalized single-walled carbon nanotubes SWCNT) and mercaptocarboxylic acid capped CdTe quantum dots (QDs) and changes in the spectra accounted for with respect to the proposed conjugate structures. Distinct differences ccur for linked and adsorbed or mixed conjugates in the bsorption, infrared (IR) and Raman spectra and for thermal ravimetric decay profiles, suggesting successful formation f covalent bonds (linked) and point to structurally ifferent materials. SWCNT quench MPc fluorescence by a photoinduced electron transfer mediated process to give low fluorescence quantum yields. The QDs were used as energy transfer donors and facilitate energy transfer, through Förster resonance energy transfer (FRET) from the QDs to the MPcs. Improved FRET efficiencies were found for linked MPc-QD conjugates relative to the mixed species. Photophysicochemical properties of MPcs were, in general, improved as a result of interactions with nanoparticles.
- Full Text:
- Date Issued: 2010
Psigobiografiese persoonlikheidsbeskrywing van Generaal Christiaan de Wet
- Authors: Henning, Riana
- Date: 2010
- Subjects: De Wet, Christiaan Rudolf, 1854-1922 Psychology -- Biographical methods Psychoanalysis Big Five model Politicians -- Psychology South Africa -- Politics and government -- 1836-1909 South Africa -- Politics and government -- 1909-1948
- Language: Afrikaans
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2990 , http://hdl.handle.net/10962/d1002499
- Description: Hierdie is 'n psigobiografiese studie van Generaal Christiaan Rudolph de Wet. 'n Psigobiografiese studie is die bestudering van 'n persoon se volledige lewe met die doel om die persoon beter te verstaan. Psigobiografiese navorsing maak gebruik van psigologiese teorieë wat aangewend word om die biografiese data van 'n persoon se lewe te beskryf en moontlik ook te verklaar. Die individu wat bestudeer word, is gewoonlik 'n bekende, invloedryke, navolgenswaardige, interessante of modelfiguur. Daar is tans 'n oplewing in die veld van psigobiografiese studies, maar daar word nog steeds nie genoeg in die akademiese veld gedoen om psigobiografiese studies te bevorder nie. De Wet (1854-1922) is vir hierdie studie gekies omdat hy 'n interessante, dog komplekse figuur was. Hy het veral tydens die Anglo-Boereoorlog in 1899-1902 bekendheid verwerf. As 45-jarige man het De Wet in die Anglo-Boereoorlog geveg en vinnig opgang as 'n militêre leier gemaak. Sy vindingryke ontsnappingspogings het die Britse magte hoofbrekens besorg. Wat De Wet verder uniek maak, is dat hy met net drie maande skoolopleiding in die parlement gedien het, as president verkies is, die hoogste gesag in die Verdedigingsmag gehad het en 'n boek oor sy oorlogsherinneringe geskryf het. Alhoewel daar akademiese werke oor De Wet bestaan, is daar tot op hede nog geen psigobiografiese studie oor hom gedoen nie. Die doel van die studie was om die mens agter die legende na vore te bring. Daar is ook gepoog om moontlike antwoorde en verklarings op onbeantwoorde vrae te gee. Die studie het van beide kwalitatiewe en kwantitatiewe data gebruik gemaak en kan as 'n psigobiografiese gevalstudie beskryf word. Die Vyf-faktor model van Costa en McCrae (1992) is op die biografiese data van De Wet toegepas om sodoende sy persoonlikheidseienskappe te beskryf. Die bevindinge het interessante persoonlikheidseienskappe van De Wet deur middel van die Vyf-faktor model aan die lig gebring. Volgens die kwalitatiewe navorsingsbevindinge was De Wet 'n vyandige, aksie-gedrewe, bevoegde, prestasie-strewende, selfgedissiplineerde, warm, openhartige, saggeaarde en beskeie persoon. Die kwalitatiewe en kwantitatiewe data-ontledings het uiteenlopende persoonlikheidskenmerke by De Wet geïdentifiseer. Die grootste verskille het by die fasette warmte, openhartigheid en altruïsme voorgekom. Die waarde van die studie is dat 'n wetenskaplike persoonlikheidsontleding van De Wet gedoen is. Dit is ook die eerste studie waar 'n teoretiese model op De Wet se persoonlikheid toegepas is. Alhoewel die studie sekere tekortkominge toon, beklemtoon dit terselfdertyd die wenslikheid daarvan om alternatiewe modelle te gebruik tydens die ontleding van persoonlikheidskenmerke. Die studie dui ook op die behoefte aan verdere navorsing, byvoorbeeld soortgelyke ontledings en vergelykings van die persoonlikhede van ander militêre bevelvoerders (De la Rey, Smuts, Beyers, Hertzog).
- Full Text:
- Date Issued: 2010
- Authors: Henning, Riana
- Date: 2010
- Subjects: De Wet, Christiaan Rudolf, 1854-1922 Psychology -- Biographical methods Psychoanalysis Big Five model Politicians -- Psychology South Africa -- Politics and government -- 1836-1909 South Africa -- Politics and government -- 1909-1948
- Language: Afrikaans
- Type: Thesis , Doctoral , PhD
- Identifier: vital:2990 , http://hdl.handle.net/10962/d1002499
- Description: Hierdie is 'n psigobiografiese studie van Generaal Christiaan Rudolph de Wet. 'n Psigobiografiese studie is die bestudering van 'n persoon se volledige lewe met die doel om die persoon beter te verstaan. Psigobiografiese navorsing maak gebruik van psigologiese teorieë wat aangewend word om die biografiese data van 'n persoon se lewe te beskryf en moontlik ook te verklaar. Die individu wat bestudeer word, is gewoonlik 'n bekende, invloedryke, navolgenswaardige, interessante of modelfiguur. Daar is tans 'n oplewing in die veld van psigobiografiese studies, maar daar word nog steeds nie genoeg in die akademiese veld gedoen om psigobiografiese studies te bevorder nie. De Wet (1854-1922) is vir hierdie studie gekies omdat hy 'n interessante, dog komplekse figuur was. Hy het veral tydens die Anglo-Boereoorlog in 1899-1902 bekendheid verwerf. As 45-jarige man het De Wet in die Anglo-Boereoorlog geveg en vinnig opgang as 'n militêre leier gemaak. Sy vindingryke ontsnappingspogings het die Britse magte hoofbrekens besorg. Wat De Wet verder uniek maak, is dat hy met net drie maande skoolopleiding in die parlement gedien het, as president verkies is, die hoogste gesag in die Verdedigingsmag gehad het en 'n boek oor sy oorlogsherinneringe geskryf het. Alhoewel daar akademiese werke oor De Wet bestaan, is daar tot op hede nog geen psigobiografiese studie oor hom gedoen nie. Die doel van die studie was om die mens agter die legende na vore te bring. Daar is ook gepoog om moontlike antwoorde en verklarings op onbeantwoorde vrae te gee. Die studie het van beide kwalitatiewe en kwantitatiewe data gebruik gemaak en kan as 'n psigobiografiese gevalstudie beskryf word. Die Vyf-faktor model van Costa en McCrae (1992) is op die biografiese data van De Wet toegepas om sodoende sy persoonlikheidseienskappe te beskryf. Die bevindinge het interessante persoonlikheidseienskappe van De Wet deur middel van die Vyf-faktor model aan die lig gebring. Volgens die kwalitatiewe navorsingsbevindinge was De Wet 'n vyandige, aksie-gedrewe, bevoegde, prestasie-strewende, selfgedissiplineerde, warm, openhartige, saggeaarde en beskeie persoon. Die kwalitatiewe en kwantitatiewe data-ontledings het uiteenlopende persoonlikheidskenmerke by De Wet geïdentifiseer. Die grootste verskille het by die fasette warmte, openhartigheid en altruïsme voorgekom. Die waarde van die studie is dat 'n wetenskaplike persoonlikheidsontleding van De Wet gedoen is. Dit is ook die eerste studie waar 'n teoretiese model op De Wet se persoonlikheid toegepas is. Alhoewel die studie sekere tekortkominge toon, beklemtoon dit terselfdertyd die wenslikheid daarvan om alternatiewe modelle te gebruik tydens die ontleding van persoonlikheidskenmerke. Die studie dui ook op die behoefte aan verdere navorsing, byvoorbeeld soortgelyke ontledings en vergelykings van die persoonlikhede van ander militêre bevelvoerders (De la Rey, Smuts, Beyers, Hertzog).
- Full Text:
- Date Issued: 2010
Rethinking South Africa's small-scale fisheries management paradigm and governance approach : evidence from the Eastern Cape
- Authors: Raemaekers, Serge
- Date: 2010
- Subjects: Fishery management -- South Africa -- Eastern Cape -- Case studies Fishery policy -- South Africa -- Eastern Cape -- Case studies Small-scale fisheries -- Economic aspects -- South Africa -- Eastern Cape -- Case studies Small-scale fisheries -- Social aspects -- South Africa -- Eastern Cape -- Case studies Small-scale fisheries -- South Africa -- Eastern Cape -- Case studies
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5202 , http://hdl.handle.net/10962/d1003921
- Description: This thesis presents a first analysis of how the South African fisheries authority (MCM) has utilised its fisheries management toolbox and governance framework in response to the emerging biological, economic and social challenges of post-apartheid fisheries in the Eastern Cape Province. Despite recognition of the socio-economic circumstances of traditional subsistence fishers in the region, the national fisheries management authority implemented a 'target resource orientated' management approach similar to that used for South Africa's rights-based commercial fisheries. Anecdotal evidence of entrenched illegal fishing for abalone, spiny lobster, and species targeted by subsistence fishers however suggested that MCM's management approach was encountering serious problems, as the needs and circumstances of inshore fishers and fishing communities were not adequately being understood and addressed. A review of fisheries management literature therefore shaped the hypothesis that an underlying governance problem was responsible for the symptoms of management failure being observed. In this regard, management is seen as more concerned with the technical and regulatory measures of the day-to-day operations of regulated fisheries, while fisheries governance needs to take account of "the sum of legal, social, economic and political arrangements used to manage fisheries ... ". Thus, governance includes policy making and management decision-making, with simultaneous recognition of issues outside of the fisheries sector. It thus appeared that the underlying problem was rather one of broader fisheries governance and inappropriate governance objectives with consequent inappropriate resource management arrangements. This thesis set out to gather evidence to test this hypothesis.
- Full Text:
- Date Issued: 2010
- Authors: Raemaekers, Serge
- Date: 2010
- Subjects: Fishery management -- South Africa -- Eastern Cape -- Case studies Fishery policy -- South Africa -- Eastern Cape -- Case studies Small-scale fisheries -- Economic aspects -- South Africa -- Eastern Cape -- Case studies Small-scale fisheries -- Social aspects -- South Africa -- Eastern Cape -- Case studies Small-scale fisheries -- South Africa -- Eastern Cape -- Case studies
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5202 , http://hdl.handle.net/10962/d1003921
- Description: This thesis presents a first analysis of how the South African fisheries authority (MCM) has utilised its fisheries management toolbox and governance framework in response to the emerging biological, economic and social challenges of post-apartheid fisheries in the Eastern Cape Province. Despite recognition of the socio-economic circumstances of traditional subsistence fishers in the region, the national fisheries management authority implemented a 'target resource orientated' management approach similar to that used for South Africa's rights-based commercial fisheries. Anecdotal evidence of entrenched illegal fishing for abalone, spiny lobster, and species targeted by subsistence fishers however suggested that MCM's management approach was encountering serious problems, as the needs and circumstances of inshore fishers and fishing communities were not adequately being understood and addressed. A review of fisheries management literature therefore shaped the hypothesis that an underlying governance problem was responsible for the symptoms of management failure being observed. In this regard, management is seen as more concerned with the technical and regulatory measures of the day-to-day operations of regulated fisheries, while fisheries governance needs to take account of "the sum of legal, social, economic and political arrangements used to manage fisheries ... ". Thus, governance includes policy making and management decision-making, with simultaneous recognition of issues outside of the fisheries sector. It thus appeared that the underlying problem was rather one of broader fisheries governance and inappropriate governance objectives with consequent inappropriate resource management arrangements. This thesis set out to gather evidence to test this hypothesis.
- Full Text:
- Date Issued: 2010
Sample preparation for pesticide analysis in water and sediments a case study of the Okavango Delta, Botswana
- Authors: Mmualefe, Lesego Cecilia
- Date: 2010
- Subjects: Water quality -- Botswana -- Okavango Delta Water -- Analysis Pesticides -- Environmental aspects -- Botswana -- Okavango Delta Water -- Pollution -- Botswana -- Okavango Delta DDT (Insecticide) -- Environmental aspects -- Botswana -- Okavango Delta
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4344 , http://hdl.handle.net/10962/d1005006
- Description: This thesis presents a first ever extensive analysis of pesticides in water and sediments from the Okavango Delta, Botswana, employing green sample preparation techniques that require small volumes of organic solvents hence generating negligible volumes of organic solvent waste. Pesticides were extracted and pre-concentrated from water by solid phase extraction (SPE) and headspace solid phase microextraction (HS-SPME) while supercritical fluid extraction (SFE) and pressurized fluid extraction (PFE) were employed for sediments. Subsequent analysis was carried out on a gas chromatograph with electron capture detection and analytes were unequivocally confirmed by high resolution mass spectrometric detection. Hexachlorobenzene (HCB), trans-chlordane, 4,4′-DDD and 4,4′-DDE were detected after optimized HS-SPME in several water samples from the lower Delta at concentrations ranging from 2.4 to 61.4 μg L-1 that are much higher than the 0.1 μg L-1 maximum limit of individual organochlorine pesticides in drinking water set by the European Community Directive. The same samples were cleaned with ISOLUTE C18 SPE sorbent with an optimal acetone/n-hexane (1:1 v/v) mixture for the elution of analytes. No pesticides were detected after SPE clean-up and pre-concentration. HCB, aldrin and 4, 4‟-DDT were identified in sediments after SFE at concentration ranges of 1.1 - 30.3, 0.5 – 15.2 and 1.4 – 55.4 μg/g, respectively. There was an increase of pesticides concentrations in the direction of water flow from the Panhandle (point of entry) to the lower delta. DDE, fatty acids and phthalates were detected after PFE with optimized extraction solvent and temperature. The presence of DDT metabolites in the water and sediments from the Okavango Delta confirm historical exposure to the pesticide. However their cumulative concentration increase in the water-flow direction calls for further investigation of point sources for the long-term preservation of the Delta. The green sample preparation techniques and low toxicity solvents employed in this thesis are thus recommended for routine environmental monitoring exercises.
- Full Text:
- Date Issued: 2010
- Authors: Mmualefe, Lesego Cecilia
- Date: 2010
- Subjects: Water quality -- Botswana -- Okavango Delta Water -- Analysis Pesticides -- Environmental aspects -- Botswana -- Okavango Delta Water -- Pollution -- Botswana -- Okavango Delta DDT (Insecticide) -- Environmental aspects -- Botswana -- Okavango Delta
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4344 , http://hdl.handle.net/10962/d1005006
- Description: This thesis presents a first ever extensive analysis of pesticides in water and sediments from the Okavango Delta, Botswana, employing green sample preparation techniques that require small volumes of organic solvents hence generating negligible volumes of organic solvent waste. Pesticides were extracted and pre-concentrated from water by solid phase extraction (SPE) and headspace solid phase microextraction (HS-SPME) while supercritical fluid extraction (SFE) and pressurized fluid extraction (PFE) were employed for sediments. Subsequent analysis was carried out on a gas chromatograph with electron capture detection and analytes were unequivocally confirmed by high resolution mass spectrometric detection. Hexachlorobenzene (HCB), trans-chlordane, 4,4′-DDD and 4,4′-DDE were detected after optimized HS-SPME in several water samples from the lower Delta at concentrations ranging from 2.4 to 61.4 μg L-1 that are much higher than the 0.1 μg L-1 maximum limit of individual organochlorine pesticides in drinking water set by the European Community Directive. The same samples were cleaned with ISOLUTE C18 SPE sorbent with an optimal acetone/n-hexane (1:1 v/v) mixture for the elution of analytes. No pesticides were detected after SPE clean-up and pre-concentration. HCB, aldrin and 4, 4‟-DDT were identified in sediments after SFE at concentration ranges of 1.1 - 30.3, 0.5 – 15.2 and 1.4 – 55.4 μg/g, respectively. There was an increase of pesticides concentrations in the direction of water flow from the Panhandle (point of entry) to the lower delta. DDE, fatty acids and phthalates were detected after PFE with optimized extraction solvent and temperature. The presence of DDT metabolites in the water and sediments from the Okavango Delta confirm historical exposure to the pesticide. However their cumulative concentration increase in the water-flow direction calls for further investigation of point sources for the long-term preservation of the Delta. The green sample preparation techniques and low toxicity solvents employed in this thesis are thus recommended for routine environmental monitoring exercises.
- Full Text:
- Date Issued: 2010
Studies on mixed-species colonies of honeybees, Apis cerana and Apis mellifera
- Authors: Yang, Ming-Xian
- Date: 2010
- Subjects: Bees Apis cerana Honeybee Honeybee -- Behavior Bee culture Honeybee -- Physiology Insect societies Animal communication Bees -- Nests
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5779 , http://hdl.handle.net/10962/d1005467
- Description: The honeybees Apis cerana and Apis mellifera are derived from the same ancestral base about two million years ago. With speciation and evolution, they have acquired many advanced living skills in common, but have also evolved very different living strategies due to different distributions. This thesis is an intensive study of the biology of the mixed-species colonies of these species, the aims of which were to investigate their behavioural relationships and uncover the evolutionary conserved features of their behaviours subsequent to speciation. The results show that the two species can form a stable society to perform normal tasks. First, workers of both species in the mixed-colonies could form the typical retinue behaviour to hetero-species queens, thus indicating that queen pheromones could be spread to and by both species. Secondly, both species did not show significantly different ovarian activation under hetero-species queens, suggesting that the queen pheromones more likely play a role of "honest signal" rather than a "repression" substance in the honeybee colonies. Thirdly, both species could mutually decode each other‘s waggle dances, with unexpectedly low misunderstanding; revealing that the dance language in a dark environment is quite adaptive for cavity-nesting honeybees. Fourthly, workers of both species could cooperate with each other in comb construction, although the combs they built contain many irregular cells. Interestingly, A. cerana workers could be stimulated by A. mellifera workers to perform this task, thus confirming self-organization theory in the colony. Fifthly, A. mellifera workers behaved more "defectively" in thermoregulation, but perhaps because A. cerana workers are more sensitive to changes in hive temperature. Given these differences in strategy, A. mellifera workers‘ performance might in fact reduce conflicts. Lastly, when faced with threats of predatory wasps, both species engaged in aggressive defence. Although they did not learn from each other‘s responses, species-specific strategies were adopted by each of them so that the defence of the mixed-colonies is very effective. I conclude that the two species can adapt to each other‘s efforts and task allocation is reasonably organized allowing mixed-species colonies to reach stability. These results suggest that all of the social behaviours discussed here were highly conserved following speciation. This thesis could provide some clues for the study of honeybee evolution from open-nesting to the transition of cavity-nesting.
- Full Text:
- Date Issued: 2010
- Authors: Yang, Ming-Xian
- Date: 2010
- Subjects: Bees Apis cerana Honeybee Honeybee -- Behavior Bee culture Honeybee -- Physiology Insect societies Animal communication Bees -- Nests
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5779 , http://hdl.handle.net/10962/d1005467
- Description: The honeybees Apis cerana and Apis mellifera are derived from the same ancestral base about two million years ago. With speciation and evolution, they have acquired many advanced living skills in common, but have also evolved very different living strategies due to different distributions. This thesis is an intensive study of the biology of the mixed-species colonies of these species, the aims of which were to investigate their behavioural relationships and uncover the evolutionary conserved features of their behaviours subsequent to speciation. The results show that the two species can form a stable society to perform normal tasks. First, workers of both species in the mixed-colonies could form the typical retinue behaviour to hetero-species queens, thus indicating that queen pheromones could be spread to and by both species. Secondly, both species did not show significantly different ovarian activation under hetero-species queens, suggesting that the queen pheromones more likely play a role of "honest signal" rather than a "repression" substance in the honeybee colonies. Thirdly, both species could mutually decode each other‘s waggle dances, with unexpectedly low misunderstanding; revealing that the dance language in a dark environment is quite adaptive for cavity-nesting honeybees. Fourthly, workers of both species could cooperate with each other in comb construction, although the combs they built contain many irregular cells. Interestingly, A. cerana workers could be stimulated by A. mellifera workers to perform this task, thus confirming self-organization theory in the colony. Fifthly, A. mellifera workers behaved more "defectively" in thermoregulation, but perhaps because A. cerana workers are more sensitive to changes in hive temperature. Given these differences in strategy, A. mellifera workers‘ performance might in fact reduce conflicts. Lastly, when faced with threats of predatory wasps, both species engaged in aggressive defence. Although they did not learn from each other‘s responses, species-specific strategies were adopted by each of them so that the defence of the mixed-colonies is very effective. I conclude that the two species can adapt to each other‘s efforts and task allocation is reasonably organized allowing mixed-species colonies to reach stability. These results suggest that all of the social behaviours discussed here were highly conserved following speciation. This thesis could provide some clues for the study of honeybee evolution from open-nesting to the transition of cavity-nesting.
- Full Text:
- Date Issued: 2010
The biotechnology of hard coal utilization as a bioprocess substrate
- Mutambanengwe, Cecil Clifford Zvandada
- Authors: Mutambanengwe, Cecil Clifford Zvandada
- Date: 2010
- Subjects: Coal -- Biotechnology Acid mine drainage Coal mines and mining -- Environmental aspects
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3934 , http://hdl.handle.net/10962/d1003993
- Description: The development of coal biotechnology, using hard coal as a substrate, has been impeded by its low reactivity in biological processes. As a result, the more successful application studies have focused on lignitic soft coals. However, new studies have reported using biologically or geologically oxidized hard coal as a functional substrate option for bioprocess applications on a large scale. This study undertook a preliminary investigation into the feasibility of environmental applications of coal biotechnology using oxidized hard coal substrates in both anaerobic and aerobic processes with carbon dioxide, sulfate and oxygen as terminal electron acceptors. A preliminary characterization of the oxidized hard coal substrates was undertaken to determine and predict their viability and behavior as electron donors and carbon sources for environmental bioprocess applications of direct interest to the coal mining industry. Both biologically and geologically oxidized coal substrates showed loss of up to 17% and 52% carbon respectively and incorporation of oxygen ranging from 0.9 – 24%. The latter substrate showed greater loss of carbon and increased oxygenation. The biologically and geologically oxidized hard coal substrates were shown to partition readily into 23% and 32% organic humic acid, a 0.1% fulvic acid fraction and 65% and 59% inorganic and humin fractions respectively. These organic components were shown to be potentially available for biological consumption. In the unmodified hard coal substrate, partitioning was not observed and it did not perform as a functional substrate for any of the bioprocesses investigated. Where carbon dioxide was used as a terminal electron acceptor, methane production ranging from 9 – 26 mg CH4.g substrate-1 was demonstrated from both oxidized coal substrates. Geologically oxidized coal produced 30% more methane than biologically oxidized coal. Methane yields from the geologically oxidized coal in the presence and absence of a co-substrate were 5 – 13-fold higher than previous studies that used hard coal for methanogenesis. Based on these results, and that the development and optimization of the biological oxidation process is currently ongoing, further applications investigated in this study were undertaken using geologically oxidized coal. It was shown using pyrolysis gas chromatography mass spectrometry that the methanogenic system was dependent on the presence of an effective co-substrate supporting the breakdown of the complex organic structures within the oxidized hard coal substrate. Also that the accumulation of aromatic intermediate breakdown compounds predominantly including toluene, furfural, styrene and 2-methoxy vinyl phenol appeared to become inhibitory to both methanogenic and sulfidogenic reactions. This was shown to be a more likely cause of reactor failure rather than substrate exhaustion over time. Evidence of a reductive degradation pathway of the complex organic structures within the oxidized hard coal substrates was shown through the production, accumulation and utilization of volatile fatty acids including acetic, formic, propionic, butyric and valeric acids. Comparative analysis of the volatile fatty acids produced in this system showed that geologically oxidized coal produced 20% more of the volatile fatty acids profiled and double the total concentration compared to the biologically oxidized coal. The use of geologically oxidized hard coal as a functional substrate for biological sulfate reduction was demonstrated in the neutralization of a simulated acid mine drainage wastewater in both batch and continuous process operations. Results showed an increase in pH from pH 4.0 to ~ pH 8.0 with sulfide production rates of ~ 86 mgL-1.day-1 in the batch reactions, while the pH increased to pH 9.0 and sulfide production rates of up to 450 mgL-1.day-1 were measured in the continuous process studies using sand and coal up-flow packed bed reactors. Again, the requirement for an effective co-substrate was demonstrated with lactate shown to function as a true co-substrate in this system. However, a low cost alternative to lactate would need to emerge if the process was to function in large-scale commercial environmental treatment applications. In this regard, the aerobic growth and production of Neosartorya fischeri biomass (0.64 g.biomass.g SOC-1) was demonstrated using oxidized hard coal and glutamate as a co-substrate. Both can be produced from wastes generated on coal mines, with the fungal biomass generated in potentially large volumes. Preliminary demonstration of the use of the fungal biomass as a carbon and electron donor source for biological sulfate reduction was shown and thus that this could serve as an effective substrate for anaerobic environmental treatment processes. Based on these findings, an Integrated Coal Bioprocess model was proposed using oxidized hard coal as a substrate for environmental remediation applications on coal mines. In this approach, potential applications included methane recovery from waste coal, use of waste coal in the treatment of acid mine drainage waste waters and the recovery and use of humic acids in the rehabilitation of open cast mining soils. This study provided a first report demonstrating the use of biologically and geologically oxidized hard coals as bioprocess substrates in environmental bioremediation applications. It also provided an indication that follow-up bioengineering studies to investigate scaled-up applications of these findings would be warranted.
- Full Text:
- Date Issued: 2010
- Authors: Mutambanengwe, Cecil Clifford Zvandada
- Date: 2010
- Subjects: Coal -- Biotechnology Acid mine drainage Coal mines and mining -- Environmental aspects
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3934 , http://hdl.handle.net/10962/d1003993
- Description: The development of coal biotechnology, using hard coal as a substrate, has been impeded by its low reactivity in biological processes. As a result, the more successful application studies have focused on lignitic soft coals. However, new studies have reported using biologically or geologically oxidized hard coal as a functional substrate option for bioprocess applications on a large scale. This study undertook a preliminary investigation into the feasibility of environmental applications of coal biotechnology using oxidized hard coal substrates in both anaerobic and aerobic processes with carbon dioxide, sulfate and oxygen as terminal electron acceptors. A preliminary characterization of the oxidized hard coal substrates was undertaken to determine and predict their viability and behavior as electron donors and carbon sources for environmental bioprocess applications of direct interest to the coal mining industry. Both biologically and geologically oxidized coal substrates showed loss of up to 17% and 52% carbon respectively and incorporation of oxygen ranging from 0.9 – 24%. The latter substrate showed greater loss of carbon and increased oxygenation. The biologically and geologically oxidized hard coal substrates were shown to partition readily into 23% and 32% organic humic acid, a 0.1% fulvic acid fraction and 65% and 59% inorganic and humin fractions respectively. These organic components were shown to be potentially available for biological consumption. In the unmodified hard coal substrate, partitioning was not observed and it did not perform as a functional substrate for any of the bioprocesses investigated. Where carbon dioxide was used as a terminal electron acceptor, methane production ranging from 9 – 26 mg CH4.g substrate-1 was demonstrated from both oxidized coal substrates. Geologically oxidized coal produced 30% more methane than biologically oxidized coal. Methane yields from the geologically oxidized coal in the presence and absence of a co-substrate were 5 – 13-fold higher than previous studies that used hard coal for methanogenesis. Based on these results, and that the development and optimization of the biological oxidation process is currently ongoing, further applications investigated in this study were undertaken using geologically oxidized coal. It was shown using pyrolysis gas chromatography mass spectrometry that the methanogenic system was dependent on the presence of an effective co-substrate supporting the breakdown of the complex organic structures within the oxidized hard coal substrate. Also that the accumulation of aromatic intermediate breakdown compounds predominantly including toluene, furfural, styrene and 2-methoxy vinyl phenol appeared to become inhibitory to both methanogenic and sulfidogenic reactions. This was shown to be a more likely cause of reactor failure rather than substrate exhaustion over time. Evidence of a reductive degradation pathway of the complex organic structures within the oxidized hard coal substrates was shown through the production, accumulation and utilization of volatile fatty acids including acetic, formic, propionic, butyric and valeric acids. Comparative analysis of the volatile fatty acids produced in this system showed that geologically oxidized coal produced 20% more of the volatile fatty acids profiled and double the total concentration compared to the biologically oxidized coal. The use of geologically oxidized hard coal as a functional substrate for biological sulfate reduction was demonstrated in the neutralization of a simulated acid mine drainage wastewater in both batch and continuous process operations. Results showed an increase in pH from pH 4.0 to ~ pH 8.0 with sulfide production rates of ~ 86 mgL-1.day-1 in the batch reactions, while the pH increased to pH 9.0 and sulfide production rates of up to 450 mgL-1.day-1 were measured in the continuous process studies using sand and coal up-flow packed bed reactors. Again, the requirement for an effective co-substrate was demonstrated with lactate shown to function as a true co-substrate in this system. However, a low cost alternative to lactate would need to emerge if the process was to function in large-scale commercial environmental treatment applications. In this regard, the aerobic growth and production of Neosartorya fischeri biomass (0.64 g.biomass.g SOC-1) was demonstrated using oxidized hard coal and glutamate as a co-substrate. Both can be produced from wastes generated on coal mines, with the fungal biomass generated in potentially large volumes. Preliminary demonstration of the use of the fungal biomass as a carbon and electron donor source for biological sulfate reduction was shown and thus that this could serve as an effective substrate for anaerobic environmental treatment processes. Based on these findings, an Integrated Coal Bioprocess model was proposed using oxidized hard coal as a substrate for environmental remediation applications on coal mines. In this approach, potential applications included methane recovery from waste coal, use of waste coal in the treatment of acid mine drainage waste waters and the recovery and use of humic acids in the rehabilitation of open cast mining soils. This study provided a first report demonstrating the use of biologically and geologically oxidized hard coals as bioprocess substrates in environmental bioremediation applications. It also provided an indication that follow-up bioengineering studies to investigate scaled-up applications of these findings would be warranted.
- Full Text:
- Date Issued: 2010
The characterisation of trypanosomal type 1 DnaJ-like proteins
- Authors: Ludewig, Michael Hans
- Date: 2010
- Subjects: Molecular genetics , Molecular chaperones , Protozoa , Heat shock proteins , Trypanosoma
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4126 , http://hdl.handle.net/10962/d1015205
- Description: Trypanosomes are protozoans, of which many are parasitic, and possess complex lifecycles which alternate between mammalian and arthropod hosts. As is the case with most organisms, molecular chaperones and heat shock proteins are encoded within the genomes of these protozoans. These proteins are an integral part of maintaining the structural integrity of proteins during normal and stress conditions. Heat shock protein 40 (Hsp40) is a co-chaperone of heat shock protein 70 (Hsp70) and in some cases can act as a chaperone. These proteins work together to bind non-native polypeptide structures to prevent unfolded protein aggregrate formation in times of stress, translocate proteins across organelle membranes, and transport unsalvageable proteins to proteolytic degradation by the cellular proteasome. Hsp40s are divided into four types based on their domain structure. Analysis of the nuclear genomes of eight trypanosomatid species revealed that less than 10 of the approximate 70 Hsp40 sequences per genome were Type 1 Hsp40s, many of which contained putative orthologues in the other seven trypanosomatid genomes. One of these Type 1 Hsp40s from T b. brucei, Trypanosoma brucei DnaJ 2 (Tbj2), was functionally characterised in T brucei brucei. RNA interference knockdown of expression in T brucei brucei showed that cells deficient in Tbj2 displayed a severe inhibition of the growth of the cell population. The levels of the Tbj2 protein population in T brucei brucei cells increases after exposure to 42°c and the protein was found to have a generalized cytoplasmic subcellular localization at 37°c. These findings provide evidence that Tbj2 is an orthologue of Yeast DnaJ 1 (Y dj l), an essential S. cerevisiae protein. Hsp40s interact with their partner Hsp70s through their J-domain. The amino acids of the J-domain important for a functional interaction with Hsp70 were examined in Trypanosoma cruzi DnaJ 2 (Tcj2) (the orthologue of Tbj2) and T cruzi DnaJ protein 3 (Tcj3) by testing their ability to substitute for Y dj l in Saccharomyces cerevisae and for DnaJ in Escherichia coli. In both systems, the positively charged amino acids of Helix II and III of the J-domain disrupted the functional interaction of these Hsp40s with their partner Hsp70s. Substitutions in Helix I and IV of the J-domains of Tcj2 and Tcj3 produced varied results in the two different systems, possibly suggesting that these helices serve to define with which Hsp70s a given Hsp40 can interact. The inability of an Hsp40 and an Hsp70 to interact functionally does not necessarily mean a total absence of physical interaction between these proteins. The amino acid substitution of the histidine in the HPD motif (H34Q) of the J-domain of Tcj2 and Tcj3 removed the ability of these proteins to interact functionally with S. cerevisiae Hsp70 (Ssal) in vivo. However, preliminary binding studies using the quartz crystal microbalance with dissipation monitoring (QCM-D) show that Tcj2 and Tcj2(H34Q) both physically interact with M sativa Hsp70 in vitro. This study is the first report to provide evidence that certain trypanosoma! Type 1 Hsp40s are essential proteins. Futhermore, the interaction of these Hsp40s with Hsp70 identified important features of the functional interface of this chaperone machinery.
- Full Text:
- Date Issued: 2010
- Authors: Ludewig, Michael Hans
- Date: 2010
- Subjects: Molecular genetics , Molecular chaperones , Protozoa , Heat shock proteins , Trypanosoma
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4126 , http://hdl.handle.net/10962/d1015205
- Description: Trypanosomes are protozoans, of which many are parasitic, and possess complex lifecycles which alternate between mammalian and arthropod hosts. As is the case with most organisms, molecular chaperones and heat shock proteins are encoded within the genomes of these protozoans. These proteins are an integral part of maintaining the structural integrity of proteins during normal and stress conditions. Heat shock protein 40 (Hsp40) is a co-chaperone of heat shock protein 70 (Hsp70) and in some cases can act as a chaperone. These proteins work together to bind non-native polypeptide structures to prevent unfolded protein aggregrate formation in times of stress, translocate proteins across organelle membranes, and transport unsalvageable proteins to proteolytic degradation by the cellular proteasome. Hsp40s are divided into four types based on their domain structure. Analysis of the nuclear genomes of eight trypanosomatid species revealed that less than 10 of the approximate 70 Hsp40 sequences per genome were Type 1 Hsp40s, many of which contained putative orthologues in the other seven trypanosomatid genomes. One of these Type 1 Hsp40s from T b. brucei, Trypanosoma brucei DnaJ 2 (Tbj2), was functionally characterised in T brucei brucei. RNA interference knockdown of expression in T brucei brucei showed that cells deficient in Tbj2 displayed a severe inhibition of the growth of the cell population. The levels of the Tbj2 protein population in T brucei brucei cells increases after exposure to 42°c and the protein was found to have a generalized cytoplasmic subcellular localization at 37°c. These findings provide evidence that Tbj2 is an orthologue of Yeast DnaJ 1 (Y dj l), an essential S. cerevisiae protein. Hsp40s interact with their partner Hsp70s through their J-domain. The amino acids of the J-domain important for a functional interaction with Hsp70 were examined in Trypanosoma cruzi DnaJ 2 (Tcj2) (the orthologue of Tbj2) and T cruzi DnaJ protein 3 (Tcj3) by testing their ability to substitute for Y dj l in Saccharomyces cerevisae and for DnaJ in Escherichia coli. In both systems, the positively charged amino acids of Helix II and III of the J-domain disrupted the functional interaction of these Hsp40s with their partner Hsp70s. Substitutions in Helix I and IV of the J-domains of Tcj2 and Tcj3 produced varied results in the two different systems, possibly suggesting that these helices serve to define with which Hsp70s a given Hsp40 can interact. The inability of an Hsp40 and an Hsp70 to interact functionally does not necessarily mean a total absence of physical interaction between these proteins. The amino acid substitution of the histidine in the HPD motif (H34Q) of the J-domain of Tcj2 and Tcj3 removed the ability of these proteins to interact functionally with S. cerevisiae Hsp70 (Ssal) in vivo. However, preliminary binding studies using the quartz crystal microbalance with dissipation monitoring (QCM-D) show that Tcj2 and Tcj2(H34Q) both physically interact with M sativa Hsp70 in vitro. This study is the first report to provide evidence that certain trypanosoma! Type 1 Hsp40s are essential proteins. Futhermore, the interaction of these Hsp40s with Hsp70 identified important features of the functional interface of this chaperone machinery.
- Full Text:
- Date Issued: 2010
The development and implementation of an evaluation for rural ICT projects in developing countries: an exploration of the Siyakhulu Living Lab, South Africa
- Authors: Pade Khene, Caroline Ileje
- Date: 2010
- Subjects: Siyakhula Living Lab Information technology -- South Africa -- Eastern Cape Rural development projects -- South Africa -- Eastern Cape Communication in economic development -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1138 , http://hdl.handle.net/10962/d1002767
- Description: Rural development is a priority for poverty alleviation and development in developing countries, as the majority of the poor live in rural areas. Information and knowledge are key strategic resources for social and economic development as they empower rural communities with the ability to expand their choices through knowing what works best in their communities. Information and communication technologies (ICT) play a significant role in supporting rural development activities through providing supportive development information and creating essential interconnectivities between rural areas and more developed regions. However, rural ICT for development (ICT4D) is still at best a ‘working hypothesis’, faced with barriers and challenges associated with implementation and use in the rural environment; which threaten the success, sustainability or relevance of an ICT intervention. Many key questions remain largely unanswered, with no concrete or credible data to support a wide range of claims concerning the use of ICT for development. The evaluation of rural ICT projects is indispensable as it determines the need, effectiveness, impact, sustainability and extent of the awareness of the contribution such projects or programmes can make in poverty alleviation and development. Even so, existing ICT4D evaluations are confrontedwith shortcomings and challenges which influence the accuracy and reliability of evaluation conclusions. These shortcomings highlight the need to embark on a more comprehensive evaluation approach, sensitive to the rural environment. This research study was aimed at developing a comprehensive rural ICT evaluation framework to assess ICT projects and interventions that work toward supporting poverty eradication in rural communities. A multi-method approach was used to determine the multiple variables and components associated with rural ICT evaluation, and then to determine how these variables interrelate. The approach is founded on programme evaluation, ICT for development evaluation, and information systems evaluation. Firstly, key domains of programme evaluations combined with an exploration of the need and shortcomings of ICT4D evaluation, contributed to the development of a template to analyse existing ICT4D evaluation frameworks and information systems frameworks, based on a selection of criteria. The combined analysis of the two groups of frameworks compares and contrasts key characteristics that form the structure of a comprehensive evaluation. This analysis and a review of programme evaluation enabled the development of a Rural ICT Comprehensive Evaluation Framework (RICT-CEF) that encompasses the key components essential for a comprehensive evaluation of rural ICT projects. The theoretical framework aims to inform ICT intervention to improve and support rural development, through the application of fundamental and interconnected evaluation domains sensitive to the rural environment, throughout the project’s lifecycle. In order to obtain a better understanding and application of the RICT-CEF, a real-life case study investigation of the Siyakhula Living Lab reveals the lessons learned (shortcomings and suitability) from applying a prototype of the framework in a rural environment. The study is characteristically a rich case study, as the investigation occurs at two levels: 1) The actual evaluation of the project to obtain results to improve or guide the project, through applying domains of the RICT-CEF, and 2) Observing and investigating the application of the RICT-CEF framework to learn lessons from its evaluation process in a real-life context. The research study reveals the compatibility of the RICT-CEF framework in a real-life rural ICT intervention case, and builds lessons learned for enhancing the framework and guiding future evaluations in ICT4D. The RICT-CEF can possibly be viewed as a platform for the key domains and processes essential for the evaluation of ICT4D interventions; which can be customised for a variety of ICT projects, such that a comparative assessment of projects can provide measurement and further awareness of the impact of rural ICT in developing countries.
- Full Text:
- Date Issued: 2010
- Authors: Pade Khene, Caroline Ileje
- Date: 2010
- Subjects: Siyakhula Living Lab Information technology -- South Africa -- Eastern Cape Rural development projects -- South Africa -- Eastern Cape Communication in economic development -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:1138 , http://hdl.handle.net/10962/d1002767
- Description: Rural development is a priority for poverty alleviation and development in developing countries, as the majority of the poor live in rural areas. Information and knowledge are key strategic resources for social and economic development as they empower rural communities with the ability to expand their choices through knowing what works best in their communities. Information and communication technologies (ICT) play a significant role in supporting rural development activities through providing supportive development information and creating essential interconnectivities between rural areas and more developed regions. However, rural ICT for development (ICT4D) is still at best a ‘working hypothesis’, faced with barriers and challenges associated with implementation and use in the rural environment; which threaten the success, sustainability or relevance of an ICT intervention. Many key questions remain largely unanswered, with no concrete or credible data to support a wide range of claims concerning the use of ICT for development. The evaluation of rural ICT projects is indispensable as it determines the need, effectiveness, impact, sustainability and extent of the awareness of the contribution such projects or programmes can make in poverty alleviation and development. Even so, existing ICT4D evaluations are confrontedwith shortcomings and challenges which influence the accuracy and reliability of evaluation conclusions. These shortcomings highlight the need to embark on a more comprehensive evaluation approach, sensitive to the rural environment. This research study was aimed at developing a comprehensive rural ICT evaluation framework to assess ICT projects and interventions that work toward supporting poverty eradication in rural communities. A multi-method approach was used to determine the multiple variables and components associated with rural ICT evaluation, and then to determine how these variables interrelate. The approach is founded on programme evaluation, ICT for development evaluation, and information systems evaluation. Firstly, key domains of programme evaluations combined with an exploration of the need and shortcomings of ICT4D evaluation, contributed to the development of a template to analyse existing ICT4D evaluation frameworks and information systems frameworks, based on a selection of criteria. The combined analysis of the two groups of frameworks compares and contrasts key characteristics that form the structure of a comprehensive evaluation. This analysis and a review of programme evaluation enabled the development of a Rural ICT Comprehensive Evaluation Framework (RICT-CEF) that encompasses the key components essential for a comprehensive evaluation of rural ICT projects. The theoretical framework aims to inform ICT intervention to improve and support rural development, through the application of fundamental and interconnected evaluation domains sensitive to the rural environment, throughout the project’s lifecycle. In order to obtain a better understanding and application of the RICT-CEF, a real-life case study investigation of the Siyakhula Living Lab reveals the lessons learned (shortcomings and suitability) from applying a prototype of the framework in a rural environment. The study is characteristically a rich case study, as the investigation occurs at two levels: 1) The actual evaluation of the project to obtain results to improve or guide the project, through applying domains of the RICT-CEF, and 2) Observing and investigating the application of the RICT-CEF framework to learn lessons from its evaluation process in a real-life context. The research study reveals the compatibility of the RICT-CEF framework in a real-life rural ICT intervention case, and builds lessons learned for enhancing the framework and guiding future evaluations in ICT4D. The RICT-CEF can possibly be viewed as a platform for the key domains and processes essential for the evaluation of ICT4D interventions; which can be customised for a variety of ICT projects, such that a comparative assessment of projects can provide measurement and further awareness of the impact of rural ICT in developing countries.
- Full Text:
- Date Issued: 2010
The integration of natural resource management into the curriculum of rural under-resourced schools : a Bernsteinian analysis
- Authors: Nsubuga, Yvonne Nakalo
- Date: 2010
- Subjects: Conservation of natural resources -- Study and teaching -- South Africa Environmental education -- Curricula -- South Africa -- Eastern Cape Bernstein, Basil B Nature conservation -- Study and teaching
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4762 , http://hdl.handle.net/10962/d1007157
- Description: This study was motivated by the need to improve curriculum relevance in poor rural schools through contextualised teaching and learning based on the management of local natural resources. It involved four schools which are located in the Ngqunshwa Local Municipality of the Eastern Cape Province of South Africa. The study's aim was to provide insight into and better understanding of the curriculum implementation process regarding natural resource management (NRM) education in a poor rural education context. This was done by analysing the extent of NRM integration in pedagogic texts, activities and practices in the different fields which constitute the structure of the pedagogic system in this education sector. The study adopted an interpretivist approach to the analysis, which was based on indicators of the extent of NRM integration, and was informed by Bernstein's concepts of classification and curriculum recontextualisation, and his model of the structure of the pedagogic system. The items which were analysed included national and provincial Grade 10 Life Sciences curriculum documents, Grade 10 Life Sciences textbooks, in-service training workshops for Life Sciences teachers, and various school documents, activities and practices. The analysis also involved interviews with educators, and classroom observations of Grade 10 Life Sciences lessons. The results revealed a very high overall level of NRM integration in the Grade 10 Life Sciences curriculum documents produced at national and provincial levels. The overall level of NRM integration was also found to be very high in the Grade 10 Life Science textbooks that were analysed, but very low in the in-service teacher training workshops, and in the schools' documents, activities and practices, especially in the Grade 10 Life Sciences lessons, and in schools' end-of-year Grade 10 Life Sciences examination papers. The study makes a number of recommendations towards effective integration of NRM into the curriculum of Eastern Cape's rural poor schools which include more specific and explicit reference to NRM in the official Grade 10 Life Sciences curriculum documents, the provision of environmental education courses to district education staff and Grade 10 Life Sciences teachers, the training of teachers in the classroom use of textbooks and other educational materials, and regular monitoring of teachers' work. The study also exposes important knowledge gaps which need urgent research attention in order to enhance NRM education in the poor rural schools of the Eastern Cape. These include analysing power and control relationships between the various agencies and agents that are involved with curriculum implementation in this education sector, and conducting investigation into the creation of specialist NRM knowledge and into the quality of NRM knowledge that is transmitted as pedagogic discourse in schools. This study contributes to the fields of rural education and environmental education in South Africa, and to the growing interest in the study of curriculum from a sociology of education perspective in the context of the country’s post-apartheid curriculum reforms.
- Full Text:
- Date Issued: 2010
- Authors: Nsubuga, Yvonne Nakalo
- Date: 2010
- Subjects: Conservation of natural resources -- Study and teaching -- South Africa Environmental education -- Curricula -- South Africa -- Eastern Cape Bernstein, Basil B Nature conservation -- Study and teaching
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4762 , http://hdl.handle.net/10962/d1007157
- Description: This study was motivated by the need to improve curriculum relevance in poor rural schools through contextualised teaching and learning based on the management of local natural resources. It involved four schools which are located in the Ngqunshwa Local Municipality of the Eastern Cape Province of South Africa. The study's aim was to provide insight into and better understanding of the curriculum implementation process regarding natural resource management (NRM) education in a poor rural education context. This was done by analysing the extent of NRM integration in pedagogic texts, activities and practices in the different fields which constitute the structure of the pedagogic system in this education sector. The study adopted an interpretivist approach to the analysis, which was based on indicators of the extent of NRM integration, and was informed by Bernstein's concepts of classification and curriculum recontextualisation, and his model of the structure of the pedagogic system. The items which were analysed included national and provincial Grade 10 Life Sciences curriculum documents, Grade 10 Life Sciences textbooks, in-service training workshops for Life Sciences teachers, and various school documents, activities and practices. The analysis also involved interviews with educators, and classroom observations of Grade 10 Life Sciences lessons. The results revealed a very high overall level of NRM integration in the Grade 10 Life Sciences curriculum documents produced at national and provincial levels. The overall level of NRM integration was also found to be very high in the Grade 10 Life Science textbooks that were analysed, but very low in the in-service teacher training workshops, and in the schools' documents, activities and practices, especially in the Grade 10 Life Sciences lessons, and in schools' end-of-year Grade 10 Life Sciences examination papers. The study makes a number of recommendations towards effective integration of NRM into the curriculum of Eastern Cape's rural poor schools which include more specific and explicit reference to NRM in the official Grade 10 Life Sciences curriculum documents, the provision of environmental education courses to district education staff and Grade 10 Life Sciences teachers, the training of teachers in the classroom use of textbooks and other educational materials, and regular monitoring of teachers' work. The study also exposes important knowledge gaps which need urgent research attention in order to enhance NRM education in the poor rural schools of the Eastern Cape. These include analysing power and control relationships between the various agencies and agents that are involved with curriculum implementation in this education sector, and conducting investigation into the creation of specialist NRM knowledge and into the quality of NRM knowledge that is transmitted as pedagogic discourse in schools. This study contributes to the fields of rural education and environmental education in South Africa, and to the growing interest in the study of curriculum from a sociology of education perspective in the context of the country’s post-apartheid curriculum reforms.
- Full Text:
- Date Issued: 2010
The phytogeography of the Sneeuberg, Nuweveldberge and Roggeveldberge (Great Escarpment): assessing migration routes and endemism
- Authors: Clark, Vincent Ralph
- Date: 2010
- Subjects: Phytogeography -- South Africa Endemic plants -- South Africa Plants -- Migration -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4187 , http://hdl.handle.net/10962/d1003756
- Description: The Great Escarpment forms a semi-continuous mountain system 5 000 km long, stretching from Angola in the north-west, south through Namibia, and into western, southern and eastern South Africa, including Lesotho and Swaziland. It is composed of a wide variety of geological suites but is unified in representing the edge of the African plateau and the passive Gondwanan continental margin. The Great Escarpment falls into all major climatic zones on the subcontinent, is a repository of palaeo- and neo-endemics, hosts more than half of southern Africa‟s centres of plant endemism, and has a rich suite of endemic fauna. In addition, the Great Escarpment is believed to be both a refugium and corridor for biological diversity. Despite the biological richness of the Great Escarpment, research to date has been fragmented and many sections of the Great Escarpment have not been studied. The aim of this study is to contribute to research on the Great Escarpment by undertaking a detailed floristic study of the southern Great Escarpment (the Sneeuberg, Nuweveldberge and Roggeveldberge). Together these mountains comprise approximately 1 000 km (one fifth) of the Great Escarpment, and occupy a transition zone between the summer rainfall zone in the east and the winter rainfall zone in the west. They are also the sections of Great Escarpment most closely situated to the Cape Floristic Region (CFR) and would thus be involved in hypothesised migration routes for lineages that also occur further north through the Drakensberg Alpine Centre (DAC) to the East African mountain chain. Detailed fieldwork of the southern Great Escarpment was undertaken over a period of four years in all seasons. Approximately 8 000 specimens were collected. Particular emphasis was placed on areas that may represent refugia, i.e. the highest plateaux and peaks, mesic areas and cliff-lines. An overview of each mountain range, together with their endemic plant species and phytogeography, is provided. Approximately ten new species have been discovered during this study, two of which have been described to date. Numerous endemics only known from their types have also been rediscovered. The Sneeuberg is defined as a new centre of plant endemism on the Great Escarpment (endemism of 2.3%), and the role of the Boschberg and Groot-Bruintjieshoogde (part of the Sneeuberg) as a nexus for floristic migration routes is discussed. The Nuweveldberge is shown to have low endemism despite a floristic tally similar to the Sneeuberg, while the Roggeveldberge are confirmed to be the most endemic-rich section of the southern Great Escarpment. The field data collected was augmented by available data in taxonomic revisions, and floras for the Sneeuberg, Nuweveldberge and Roggeveldberge were compiled. In order to floristically compare the southern Great Escarpment with other sections of the Great Escarpment and the CFR, a database of some 12 000 taxa was created using available floristic data for the CFR, DAC and Great WinterbergAmatolas, together with the data collated for the Sneeuberg, Nuweveldberge and Roggeveldberge. These data were analysed using phenetic methods and Parsimony Analysis of Endemicity (PAE). The results indicate stronger linkages in the east, particularly between the Sneeuberg and Nuweveldberge, and between the Sneeuberg and the Great WinterbergAmatolas. The relationship of the Roggeveldberge with the rest of the southern Great Escarpment remains ambiguous. In order to refine notions of connectivity and migration routes, 19 well-sampled phylogenies were assessed for sister-taxon disjunctions to explore CFRGreat Escarpment connections. Palaeo-connectivity between the CFR and southern Great Escarpment is most strongly supported for the south-eastern (SE) connection, and less so for the north-western (NW) and Matjiesfontein connections. There is support for the current (or recent) use of these three connections from numerous species that occur on both sides of the connections. Results of these analyses indicate that the southern Great Escarpment is a palaeo-corridor, the functioning of which has been broken by the aridification of the Nuweveldberge since the Last Glacial Maximum (LGM). Floristic connectivity is strongest in the east, from the Nuweveldberge to the DAC, and is less so in the west between the Nuweveldberge and the Roggeveldberge a finding attributed to the transition from a reliable winter rainfall regime on the Roggeveldberge to an unpredictable moisture regime on the Nuweveldberge. The mountains of the southern Great Escarpment are thus a series of refugia from a previous moister, cooler climate and are a corridor between the eastern and western components of the Great Escarpment. The SE connection is the primary link between the CFR and the eastern Great Escarpment Afromontane region in southern Africa. The implications of this research are that accurate conservation assessments and Red Data listings for many of the previously poorly-known endemics can now be made, and appropriate conservation measures implemented. Climate change remains the primary threat to these endemics and montane taxa in general, while degradation of wetlands is the primary threat to the water catchment service provided by the southern Great Escarpment. Future detailed research on the Great WinterbergAmatolas and Stormberg and a comprehensive flora of the HantamRoggeveldberge will further enhance our understanding of the floristics of the southern Great Escarpment, and provide the necessary data for comprehensive GIS-based models of proposed climate change scenarios for local, regional and national conservation planning.
- Full Text:
- Date Issued: 2010
- Authors: Clark, Vincent Ralph
- Date: 2010
- Subjects: Phytogeography -- South Africa Endemic plants -- South Africa Plants -- Migration -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4187 , http://hdl.handle.net/10962/d1003756
- Description: The Great Escarpment forms a semi-continuous mountain system 5 000 km long, stretching from Angola in the north-west, south through Namibia, and into western, southern and eastern South Africa, including Lesotho and Swaziland. It is composed of a wide variety of geological suites but is unified in representing the edge of the African plateau and the passive Gondwanan continental margin. The Great Escarpment falls into all major climatic zones on the subcontinent, is a repository of palaeo- and neo-endemics, hosts more than half of southern Africa‟s centres of plant endemism, and has a rich suite of endemic fauna. In addition, the Great Escarpment is believed to be both a refugium and corridor for biological diversity. Despite the biological richness of the Great Escarpment, research to date has been fragmented and many sections of the Great Escarpment have not been studied. The aim of this study is to contribute to research on the Great Escarpment by undertaking a detailed floristic study of the southern Great Escarpment (the Sneeuberg, Nuweveldberge and Roggeveldberge). Together these mountains comprise approximately 1 000 km (one fifth) of the Great Escarpment, and occupy a transition zone between the summer rainfall zone in the east and the winter rainfall zone in the west. They are also the sections of Great Escarpment most closely situated to the Cape Floristic Region (CFR) and would thus be involved in hypothesised migration routes for lineages that also occur further north through the Drakensberg Alpine Centre (DAC) to the East African mountain chain. Detailed fieldwork of the southern Great Escarpment was undertaken over a period of four years in all seasons. Approximately 8 000 specimens were collected. Particular emphasis was placed on areas that may represent refugia, i.e. the highest plateaux and peaks, mesic areas and cliff-lines. An overview of each mountain range, together with their endemic plant species and phytogeography, is provided. Approximately ten new species have been discovered during this study, two of which have been described to date. Numerous endemics only known from their types have also been rediscovered. The Sneeuberg is defined as a new centre of plant endemism on the Great Escarpment (endemism of 2.3%), and the role of the Boschberg and Groot-Bruintjieshoogde (part of the Sneeuberg) as a nexus for floristic migration routes is discussed. The Nuweveldberge is shown to have low endemism despite a floristic tally similar to the Sneeuberg, while the Roggeveldberge are confirmed to be the most endemic-rich section of the southern Great Escarpment. The field data collected was augmented by available data in taxonomic revisions, and floras for the Sneeuberg, Nuweveldberge and Roggeveldberge were compiled. In order to floristically compare the southern Great Escarpment with other sections of the Great Escarpment and the CFR, a database of some 12 000 taxa was created using available floristic data for the CFR, DAC and Great WinterbergAmatolas, together with the data collated for the Sneeuberg, Nuweveldberge and Roggeveldberge. These data were analysed using phenetic methods and Parsimony Analysis of Endemicity (PAE). The results indicate stronger linkages in the east, particularly between the Sneeuberg and Nuweveldberge, and between the Sneeuberg and the Great WinterbergAmatolas. The relationship of the Roggeveldberge with the rest of the southern Great Escarpment remains ambiguous. In order to refine notions of connectivity and migration routes, 19 well-sampled phylogenies were assessed for sister-taxon disjunctions to explore CFRGreat Escarpment connections. Palaeo-connectivity between the CFR and southern Great Escarpment is most strongly supported for the south-eastern (SE) connection, and less so for the north-western (NW) and Matjiesfontein connections. There is support for the current (or recent) use of these three connections from numerous species that occur on both sides of the connections. Results of these analyses indicate that the southern Great Escarpment is a palaeo-corridor, the functioning of which has been broken by the aridification of the Nuweveldberge since the Last Glacial Maximum (LGM). Floristic connectivity is strongest in the east, from the Nuweveldberge to the DAC, and is less so in the west between the Nuweveldberge and the Roggeveldberge a finding attributed to the transition from a reliable winter rainfall regime on the Roggeveldberge to an unpredictable moisture regime on the Nuweveldberge. The mountains of the southern Great Escarpment are thus a series of refugia from a previous moister, cooler climate and are a corridor between the eastern and western components of the Great Escarpment. The SE connection is the primary link between the CFR and the eastern Great Escarpment Afromontane region in southern Africa. The implications of this research are that accurate conservation assessments and Red Data listings for many of the previously poorly-known endemics can now be made, and appropriate conservation measures implemented. Climate change remains the primary threat to these endemics and montane taxa in general, while degradation of wetlands is the primary threat to the water catchment service provided by the southern Great Escarpment. Future detailed research on the Great WinterbergAmatolas and Stormberg and a comprehensive flora of the HantamRoggeveldberge will further enhance our understanding of the floristics of the southern Great Escarpment, and provide the necessary data for comprehensive GIS-based models of proposed climate change scenarios for local, regional and national conservation planning.
- Full Text:
- Date Issued: 2010
The use of response surface methodology and artificial neural networks for the establishment of a design space for a sustained release salbutamol sulphate formulation
- Authors: Chaibva, Faith Anesu
- Date: 2010
- Subjects: Salbutamol sulphate Artificial intelligence -- Medical applications Neural networks (Computer science) Response surfaces (Statistics) Pharmaceutical biotechnology -- Quality contro Drugs -- Design Pharmacokinetics Drugs -- Dosage forms Drugs -- Controlled release
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3845 , http://hdl.handle.net/10962/d1010432
- Description: Quality by Design (QbD) is a systematic approach that has been recommended as suitable for the development of quality pharmaceutical products. The QbD approach commences with the definition of a quality target drug profile and predetermined objectives that are then used to direct the formulation development process with an emphasis on understanding the pharmaceutical science and manufacturing principles that apply to a product. The design space is directly linked to the use of QbD for formulation development and is a multidimensional combination and interaction of input variables and process parameters that have been demonstrated to provide an assurance of quality. The objective of these studies was to apply the principles of QbD as a framework for the optimisation of a sustained release (SR) formulation of salbutamol sulphate (SBS), and for the establishment of a design space using Response Surface Methodology (RSM) and Artificial Neural Networks (ANN). SBS is a short-acting ♭₂ agonist that is used for the management of asthma and chronic obstructive pulmonary disease (COPD). The use of a SR formulation of SBS may provide clinical benefits in the management of these respiratory disorders. Ashtalin®8 ER (Cipla Ltd., Mumbai, Maharashtra, India) was selected as a reference formulation for use in these studies. An Ishikawa or Cause and Effect diagram was used to determine the impact of formulation and process factors that have the potential to affect product quality. Key areas of concern that must be monitored include the raw materials, the manufacturing equipment and processes, and the analytical and assessment methods employed. The conditions in the laboratory and manufacturing processes were carefully monitored and recorded for any deviation from protocol, and equipment for assessment of dosage form performance, including dissolution equipment, balances and hardness testers, underwent regular maintenance. Preliminary studies to assess the potential utility of Methocel® Kl OOM, alone and in combination with other matrix forming polymers, revealed that the combination of this polymer with xanthan gum and Carbopol® has the potential to modulate the release of SBS at a specific rate, for a period of 12 hr. A central composite design using Methocel® KlOOM, xanthan gum, Carbopol® 974P and Surelease® as the granulating fluid was constructed to fully evaluate the impact of these formulation variables on the rate and extent of SBS release from manufactured formulations. The results revealed that although Methocel® KlOOM and xanthan gum had the greatest retardant effect on drug release, interactions between the polymers used in the study were also important determinants of the measureable responses. An ANN model was trained for optimisation using the data generated from a central composite study. The efficiency of the network was optimised by assessing the impact of the number of nodes in the hidden layer using a three layer Multi Layer Perceptron (MLP). The results revealed that a network with nine nodes in the hidden layer had the best predictive ability, suitable for application to formulation optimisation studies. Pharmaceutical optimisation was conducted using both the RSM and the trained ANN models. The results from the two optimisation procedures yielded two different formulation compositions that were subjected to in vitro dissolution testing using USP Apparatus 3. The results revealed that, although the formulation compositions that were derived from the optimisation procedures were different, both solutions gave reproducible results for which the dissolution profiles were indeed similar to that of the reference formulation. RSM and ANN were further investigated as possible means of establishing a design space for formulation compositions that would result in dosage forms that have similar in vitro release test profiles comparable to the reference product. Constraint plots were used to determine the bounds of the formulation variables that would result in the manufacture of dosage forms with the desired release profile. ANN simulations with hypothetical formulations that were generated within a small region of the experimental domain were investigated as a means of understanding the impact of varying the composition of the formulation on resultant dissolution profiles. Although both methods were suitable for the establishment of a design space, the use of ANN may be better suited for this purpose because of the manner in which ANN handles data. As more information about the behaviour of a formulation and its processes is generated during the product Iifecycle, ANN may be used to evaluate the impact of formulation and process variables on measureable responses. It is recommended that ANN may be suitable for the optimisation of pharmaceutical formulations and establishment of a design space in line with ICH Pharmaceutical Development [1], Quality Risk Management [2] and Pharmaceutical Quality Systems [3]
- Full Text:
- Date Issued: 2010
- Authors: Chaibva, Faith Anesu
- Date: 2010
- Subjects: Salbutamol sulphate Artificial intelligence -- Medical applications Neural networks (Computer science) Response surfaces (Statistics) Pharmaceutical biotechnology -- Quality contro Drugs -- Design Pharmacokinetics Drugs -- Dosage forms Drugs -- Controlled release
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3845 , http://hdl.handle.net/10962/d1010432
- Description: Quality by Design (QbD) is a systematic approach that has been recommended as suitable for the development of quality pharmaceutical products. The QbD approach commences with the definition of a quality target drug profile and predetermined objectives that are then used to direct the formulation development process with an emphasis on understanding the pharmaceutical science and manufacturing principles that apply to a product. The design space is directly linked to the use of QbD for formulation development and is a multidimensional combination and interaction of input variables and process parameters that have been demonstrated to provide an assurance of quality. The objective of these studies was to apply the principles of QbD as a framework for the optimisation of a sustained release (SR) formulation of salbutamol sulphate (SBS), and for the establishment of a design space using Response Surface Methodology (RSM) and Artificial Neural Networks (ANN). SBS is a short-acting ♭₂ agonist that is used for the management of asthma and chronic obstructive pulmonary disease (COPD). The use of a SR formulation of SBS may provide clinical benefits in the management of these respiratory disorders. Ashtalin®8 ER (Cipla Ltd., Mumbai, Maharashtra, India) was selected as a reference formulation for use in these studies. An Ishikawa or Cause and Effect diagram was used to determine the impact of formulation and process factors that have the potential to affect product quality. Key areas of concern that must be monitored include the raw materials, the manufacturing equipment and processes, and the analytical and assessment methods employed. The conditions in the laboratory and manufacturing processes were carefully monitored and recorded for any deviation from protocol, and equipment for assessment of dosage form performance, including dissolution equipment, balances and hardness testers, underwent regular maintenance. Preliminary studies to assess the potential utility of Methocel® Kl OOM, alone and in combination with other matrix forming polymers, revealed that the combination of this polymer with xanthan gum and Carbopol® has the potential to modulate the release of SBS at a specific rate, for a period of 12 hr. A central composite design using Methocel® KlOOM, xanthan gum, Carbopol® 974P and Surelease® as the granulating fluid was constructed to fully evaluate the impact of these formulation variables on the rate and extent of SBS release from manufactured formulations. The results revealed that although Methocel® KlOOM and xanthan gum had the greatest retardant effect on drug release, interactions between the polymers used in the study were also important determinants of the measureable responses. An ANN model was trained for optimisation using the data generated from a central composite study. The efficiency of the network was optimised by assessing the impact of the number of nodes in the hidden layer using a three layer Multi Layer Perceptron (MLP). The results revealed that a network with nine nodes in the hidden layer had the best predictive ability, suitable for application to formulation optimisation studies. Pharmaceutical optimisation was conducted using both the RSM and the trained ANN models. The results from the two optimisation procedures yielded two different formulation compositions that were subjected to in vitro dissolution testing using USP Apparatus 3. The results revealed that, although the formulation compositions that were derived from the optimisation procedures were different, both solutions gave reproducible results for which the dissolution profiles were indeed similar to that of the reference formulation. RSM and ANN were further investigated as possible means of establishing a design space for formulation compositions that would result in dosage forms that have similar in vitro release test profiles comparable to the reference product. Constraint plots were used to determine the bounds of the formulation variables that would result in the manufacture of dosage forms with the desired release profile. ANN simulations with hypothetical formulations that were generated within a small region of the experimental domain were investigated as a means of understanding the impact of varying the composition of the formulation on resultant dissolution profiles. Although both methods were suitable for the establishment of a design space, the use of ANN may be better suited for this purpose because of the manner in which ANN handles data. As more information about the behaviour of a formulation and its processes is generated during the product Iifecycle, ANN may be used to evaluate the impact of formulation and process variables on measureable responses. It is recommended that ANN may be suitable for the optimisation of pharmaceutical formulations and establishment of a design space in line with ICH Pharmaceutical Development [1], Quality Risk Management [2] and Pharmaceutical Quality Systems [3]
- Full Text:
- Date Issued: 2010