Trees stocks in domestic gardens and willingness to participate in tree planting initiatives in low-cost housing areas of the Eastern Cape, South Africa
- Gwedla, Nanamhla, Shackleton, Charlie, Olvitt, Lausanne L
- Authors: Gwedla, Nanamhla , Shackleton, Charlie , Olvitt, Lausanne L
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/372825 , vital:66626 , xlink:href="https://doi.org/10.1016/j.ufug.2022.127484"
- Description: Increasing human populations and rapid urbanization in sub-Saharan Africa have prompted the development and maintenance of urban green infrastructure, including urban trees for sustainability, human wellbeing, liveability and climate resilience. However, there are still insufficient amounts and large inequities in the distribution of trees between and within towns and cities of the Global North and South. In South Africa, urban green space planning and planting are encoded in several policies at national level. However, these policies are rarely translated into specific guides, standards or actions, and consequently disparities in urban trees and green space distribution persist. This study assessed the prevalence of urban trees in domestic gardens in low-cost housing areas (LCHAs) of eight small to medium-sized towns in the Eastern Cape province of South Africa and examined residents’ perceptions in this regard. This was done via surveys with 800 households in old and recently developed LCHAs. The results revealed that most households (52 %) had at least one tree in their yard, with more households in the older neighbourhoods (60 %) reporting having trees than in the newer ones (44 %). Most of the trees (66 %) had been deliberately planted as opposed to natural regeneration. Experience of formal urban tree planting programs was low, but 75 % of residents expressed willingness to participate in the future, preferably in tree planting and maintenance. Urban green spaces and trees cannot be an afterthought in the development of sustainable human settlements, and municipal plans should reflect tangible commitments in this regard. Meeting goals for greener LCHAs requires the involvement of local residents, and for municipal authorities to be receptive to the wishes of residents and willingness to green their residential areas.
- Full Text:
- Authors: Gwedla, Nanamhla , Shackleton, Charlie , Olvitt, Lausanne L
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/372825 , vital:66626 , xlink:href="https://doi.org/10.1016/j.ufug.2022.127484"
- Description: Increasing human populations and rapid urbanization in sub-Saharan Africa have prompted the development and maintenance of urban green infrastructure, including urban trees for sustainability, human wellbeing, liveability and climate resilience. However, there are still insufficient amounts and large inequities in the distribution of trees between and within towns and cities of the Global North and South. In South Africa, urban green space planning and planting are encoded in several policies at national level. However, these policies are rarely translated into specific guides, standards or actions, and consequently disparities in urban trees and green space distribution persist. This study assessed the prevalence of urban trees in domestic gardens in low-cost housing areas (LCHAs) of eight small to medium-sized towns in the Eastern Cape province of South Africa and examined residents’ perceptions in this regard. This was done via surveys with 800 households in old and recently developed LCHAs. The results revealed that most households (52 %) had at least one tree in their yard, with more households in the older neighbourhoods (60 %) reporting having trees than in the newer ones (44 %). Most of the trees (66 %) had been deliberately planted as opposed to natural regeneration. Experience of formal urban tree planting programs was low, but 75 % of residents expressed willingness to participate in the future, preferably in tree planting and maintenance. Urban green spaces and trees cannot be an afterthought in the development of sustainable human settlements, and municipal plans should reflect tangible commitments in this regard. Meeting goals for greener LCHAs requires the involvement of local residents, and for municipal authorities to be receptive to the wishes of residents and willingness to green their residential areas.
- Full Text:
The use and value of wild harvested provisioning ecosystem services along a landscape heterogeneity gradient in rural South Africa
- Herd-Hoare, Shannon, Shackleton, Charlie M
- Authors: Herd-Hoare, Shannon , Shackleton, Charlie M
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401341 , vital:69727 , xlink:href="https://doi.org/10.1080/26395916.2022.2140711"
- Description: Provisioning ecosystem services (PES) are typically crucial to rural livelihoods, especially in developing countries. However, the links between PES and local biodiversity or landscape heterogeneity are poorly explored. Here, we examined the extent of use and value of locally harvested wild, terrestrial and marine PES (such as wild foods, traditional medicines, firewood, building materials and others) in three villages (35–40 households per village) along a gradient of decreasing landscape heterogeneity. Households at the site with the highest landscape heterogeneity used a greater array of PES (9 ± 4) compared to the intermediate (5 ± 3) and least heterogenous (0.9 ± 0.8) sites. This resulted in a significantly greater annual value of PES to local livelihoods at the most diverse site (US$2 656 ± 2 587 per household), compared to US$1 120 ± 1 313 at the intermediate site and only US$105 ± 193 at the least heterogeneous site. This study shows the importance of access to a diversity of landscapes and PES to support rural livelihoods, which is frequently overlooked in PES valuation studies and in situations of land use change where landscape heterogeneity may decline.
- Full Text:
- Authors: Herd-Hoare, Shannon , Shackleton, Charlie M
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401341 , vital:69727 , xlink:href="https://doi.org/10.1080/26395916.2022.2140711"
- Description: Provisioning ecosystem services (PES) are typically crucial to rural livelihoods, especially in developing countries. However, the links between PES and local biodiversity or landscape heterogeneity are poorly explored. Here, we examined the extent of use and value of locally harvested wild, terrestrial and marine PES (such as wild foods, traditional medicines, firewood, building materials and others) in three villages (35–40 households per village) along a gradient of decreasing landscape heterogeneity. Households at the site with the highest landscape heterogeneity used a greater array of PES (9 ± 4) compared to the intermediate (5 ± 3) and least heterogenous (0.9 ± 0.8) sites. This resulted in a significantly greater annual value of PES to local livelihoods at the most diverse site (US$2 656 ± 2 587 per household), compared to US$1 120 ± 1 313 at the intermediate site and only US$105 ± 193 at the least heterogeneous site. This study shows the importance of access to a diversity of landscapes and PES to support rural livelihoods, which is frequently overlooked in PES valuation studies and in situations of land use change where landscape heterogeneity may decline.
- Full Text:
Understanding rural–urban transitions in the Global South through peri-urban turbulence
- Hutchings, Paul, Willcock, Simon, Lynch, Kenneth, Bundhoo, Dilshaad, Brewer, Tim, Cooper, Sarah, Keech, Daniel, Mekala, Sneha, Mishra, Prajna P, Parker, Alison, Shackleton, Charlie M, Venkatesh, Kongala, Vicario, Dolores R, Welivita, Indunee
- Authors: Hutchings, Paul , Willcock, Simon , Lynch, Kenneth , Bundhoo, Dilshaad , Brewer, Tim , Cooper, Sarah , Keech, Daniel , Mekala, Sneha , Mishra, Prajna P , Parker, Alison , Shackleton, Charlie M , Venkatesh, Kongala , Vicario, Dolores R , Welivita, Indunee
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401368 , vital:69729 , xlink:href="https://doi.org/10.1038/s41893-022-00920-w"
- Description: Much previous research has problematized the use of a binary urban–rural distinction to describe human settlement patterns in and around cities. Peri-urban zones, on the edge of urban settlements, are important both in the sheer magnitude of human population and in terms of being home to vulnerable populations with high rates of poverty. This Perspective presents a framework that conceptualizes rural–urban transition through the prism of shifts in natural, engineered and institutional infrastructure to explain the processes of rapid change and the dip in service provision often found in peri-urban areas in the Global South. We draw on examples related to the provision of water and sanitation to illustrate the theory and discuss its implications for future research on the peri-urban. A research agenda is set out that emphasizes the importance of studying early warning signs of service dips using systems theory concepts such as flickering and critical slowing down. Through such approaches, research can better predict and explain what we call peri-urban turbulence and inform the development of mitigation strategies to reduce the vulnerabilities that peri-urban residents too often face during periods of rural–urban transition.
- Full Text:
- Authors: Hutchings, Paul , Willcock, Simon , Lynch, Kenneth , Bundhoo, Dilshaad , Brewer, Tim , Cooper, Sarah , Keech, Daniel , Mekala, Sneha , Mishra, Prajna P , Parker, Alison , Shackleton, Charlie M , Venkatesh, Kongala , Vicario, Dolores R , Welivita, Indunee
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401368 , vital:69729 , xlink:href="https://doi.org/10.1038/s41893-022-00920-w"
- Description: Much previous research has problematized the use of a binary urban–rural distinction to describe human settlement patterns in and around cities. Peri-urban zones, on the edge of urban settlements, are important both in the sheer magnitude of human population and in terms of being home to vulnerable populations with high rates of poverty. This Perspective presents a framework that conceptualizes rural–urban transition through the prism of shifts in natural, engineered and institutional infrastructure to explain the processes of rapid change and the dip in service provision often found in peri-urban areas in the Global South. We draw on examples related to the provision of water and sanitation to illustrate the theory and discuss its implications for future research on the peri-urban. A research agenda is set out that emphasizes the importance of studying early warning signs of service dips using systems theory concepts such as flickering and critical slowing down. Through such approaches, research can better predict and explain what we call peri-urban turbulence and inform the development of mitigation strategies to reduce the vulnerabilities that peri-urban residents too often face during periods of rural–urban transition.
- Full Text:
Working in poverty: Informal employment of household gardeners in Eastern Cape towns, South Africa
- King, A, Shackleton, Charlie M
- Authors: King, A , Shackleton, Charlie M
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401398 , vital:69731 , xlink:href="https://doi.org/10.1080/0376835X.2021.1940867"
- Description: In South Africa there has been relatively little consideration of the informal employment offered to domestic household workers and gardeners. Here we report on the number and profile of gardeners employed by private households and the wage and satisfaction rates in 12 towns of the Eastern Cape. Over 98% of the informal gardeners were male, middle-aged and with limited formal schooling. Approximately 58% of middle and upper income households employed a gardener, at a mean daily rate of R112.20 in 2019. This equated to 13 170 gardeners earning a total wage bill of R139 million p.a. across the 12 towns, which scales up to 0.7–1 million informal gardeners nationally earning approximately R10–14 billion per year. However, daily remuneration was insufficient to cover basic needs, and slightly more than half of the gardeners would prefer a different job, indicating the survivalist nature of the sector.
- Full Text:
- Authors: King, A , Shackleton, Charlie M
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401398 , vital:69731 , xlink:href="https://doi.org/10.1080/0376835X.2021.1940867"
- Description: In South Africa there has been relatively little consideration of the informal employment offered to domestic household workers and gardeners. Here we report on the number and profile of gardeners employed by private households and the wage and satisfaction rates in 12 towns of the Eastern Cape. Over 98% of the informal gardeners were male, middle-aged and with limited formal schooling. Approximately 58% of middle and upper income households employed a gardener, at a mean daily rate of R112.20 in 2019. This equated to 13 170 gardeners earning a total wage bill of R139 million p.a. across the 12 towns, which scales up to 0.7–1 million informal gardeners nationally earning approximately R10–14 billion per year. However, daily remuneration was insufficient to cover basic needs, and slightly more than half of the gardeners would prefer a different job, indicating the survivalist nature of the sector.
- Full Text:
Ga III triarylcorroles with push–pull substitutions
- Niu, Yingjie, Wang, Lin, Guo, Yingxin, Zhu, Weihua, Soy, Rodah C, Babu, Balaji, Mack, John, Nyokong, Tebello, Xu, Haijun, Liang, Xu
- Authors: Niu, Yingjie , Wang, Lin , Guo, Yingxin , Zhu, Weihua , Soy, Rodah C , Babu, Balaji , Mack, John , Nyokong, Tebello , Xu, Haijun , Liang, Xu
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300079 , vital:57890 , xlink:href="https://doi.org/10.1039/D2DT01262F"
- Description: Two A2B type H3corroles and two GaIIItriarylcorroles with carbazole substitutions at 10-positions were synthesized and characterized. An analysis of structure–property relationships of the corroles has been carried out by investigating the optical spectroscopy of the dyes to trends predicted in DFT and TD-DFT calculations. Interestingly, the photodynamic therapy (PDT) and photodynamic antimicrobial chemotherapy (PACT) activity properties of the GaIIItriarylcorroles were determined against the MCF-7 breast cancer line, and Staphyloccocus aureus (S. aureus) and Escherichia coli (E. coli), respectively. The cationic G-2Q species exhibited the most favorable properties with an IC50 value of 7.8 μM against MCF-7 cells, and Log reduction values of 7.78 and 3.26 against planktonic S. aureus and E. coli at 0.5 and 10 μM, respectively.
- Full Text:
- Authors: Niu, Yingjie , Wang, Lin , Guo, Yingxin , Zhu, Weihua , Soy, Rodah C , Babu, Balaji , Mack, John , Nyokong, Tebello , Xu, Haijun , Liang, Xu
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300079 , vital:57890 , xlink:href="https://doi.org/10.1039/D2DT01262F"
- Description: Two A2B type H3corroles and two GaIIItriarylcorroles with carbazole substitutions at 10-positions were synthesized and characterized. An analysis of structure–property relationships of the corroles has been carried out by investigating the optical spectroscopy of the dyes to trends predicted in DFT and TD-DFT calculations. Interestingly, the photodynamic therapy (PDT) and photodynamic antimicrobial chemotherapy (PACT) activity properties of the GaIIItriarylcorroles were determined against the MCF-7 breast cancer line, and Staphyloccocus aureus (S. aureus) and Escherichia coli (E. coli), respectively. The cationic G-2Q species exhibited the most favorable properties with an IC50 value of 7.8 μM against MCF-7 cells, and Log reduction values of 7.78 and 3.26 against planktonic S. aureus and E. coli at 0.5 and 10 μM, respectively.
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Indium phthalocyanines
- Pinar, Sen, Mack, John, Nyokong, Tebello
- Authors: Pinar, Sen , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229998 , vital:49731 , xlink:href="https://doi.org/10.1016/j.molstruc.2021.131850"
- Description: In this study, the photodynamic antimicrobial activities of a series of new tetra-substituted indium phthalocyanine (InPc) complexes are assessed. An aldehyde substituted complex (2) was initially prepared, which was converted through a condensatioreaction to an imine-pyrrolidine substituted complex (3), which in turn was quaternized to form a tetracationic species (4). Favorable photophysicochemical properties were obtained by incorporating a heavy In(III) ion into the central cavity. Aggregation studies revealed that 2–4 remain non-aggregated in DMSO at concentration below 25 µM. The photodeactivation of S.aureus and E.coli was studied. Log reduction values > 9.0 were obtained for cationic InPc 4 after 30 min of incubation and exposure to light for 75 min.
- Full Text:
- Authors: Pinar, Sen , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229998 , vital:49731 , xlink:href="https://doi.org/10.1016/j.molstruc.2021.131850"
- Description: In this study, the photodynamic antimicrobial activities of a series of new tetra-substituted indium phthalocyanine (InPc) complexes are assessed. An aldehyde substituted complex (2) was initially prepared, which was converted through a condensatioreaction to an imine-pyrrolidine substituted complex (3), which in turn was quaternized to form a tetracationic species (4). Favorable photophysicochemical properties were obtained by incorporating a heavy In(III) ion into the central cavity. Aggregation studies revealed that 2–4 remain non-aggregated in DMSO at concentration below 25 µM. The photodeactivation of S.aureus and E.coli was studied. Log reduction values > 9.0 were obtained for cationic InPc 4 after 30 min of incubation and exposure to light for 75 min.
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Light-driven antimicrobial therapy of palladium porphyrins and their chitosan immobilization derivatives and their photophysical-chemical properties
- Sen, Pinar, Soy, Rodah, Mgidlana, Sithi, Mack, John, Nyokong, Tebello
- Authors: Sen, Pinar , Soy, Rodah , Mgidlana, Sithi , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300112 , vital:57894 , xlink:href="https://doi.org/10.1016/j.dyepig.2022.110313"
- Description: The emergence of antimicrobial resistance has made the development of photodynamic therapy (PDT) related applications essential, since microorganisms can not form resistance to this method. Porphyrins are well-known photosensitizers for PDT related applications. Thus, the present study outlines the synthesis, characterization and evaluation of the utility of palladium porphyrins and their chitosan inclusion complexes as photosensitizer dye in photodynamic antimicrobial therapy (PACT). Before in vitro cell studies, the photophysical-chemical studies of all obtained structures were performed in solution. It was observed that the immobilization of the porphyrins into the chitosan influenced the photophysical-chemical and PACT activity properties. The determined fluorescence quantum yield was very low, in the range of 0.007–0.028 for all samples indicating the efficient triplet state population to cause high singlet oxygen quantum yield (ΦΔ). The measured ΦΔ values were in the range of 0.51–0.61 for the porphyrins and 0.53–0.66 for porphyrin chitosan immobilization complexes. Our results demonstrate that the PACT activity of cationic porphyrin (P3) and its chitosan immobilization form (P3-Ct) were more efficient in decreasing the number of viable cells up to 100% in vitro.
- Full Text:
- Authors: Sen, Pinar , Soy, Rodah , Mgidlana, Sithi , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300112 , vital:57894 , xlink:href="https://doi.org/10.1016/j.dyepig.2022.110313"
- Description: The emergence of antimicrobial resistance has made the development of photodynamic therapy (PDT) related applications essential, since microorganisms can not form resistance to this method. Porphyrins are well-known photosensitizers for PDT related applications. Thus, the present study outlines the synthesis, characterization and evaluation of the utility of palladium porphyrins and their chitosan inclusion complexes as photosensitizer dye in photodynamic antimicrobial therapy (PACT). Before in vitro cell studies, the photophysical-chemical studies of all obtained structures were performed in solution. It was observed that the immobilization of the porphyrins into the chitosan influenced the photophysical-chemical and PACT activity properties. The determined fluorescence quantum yield was very low, in the range of 0.007–0.028 for all samples indicating the efficient triplet state population to cause high singlet oxygen quantum yield (ΦΔ). The measured ΦΔ values were in the range of 0.51–0.61 for the porphyrins and 0.53–0.66 for porphyrin chitosan immobilization complexes. Our results demonstrate that the PACT activity of cationic porphyrin (P3) and its chitosan immobilization form (P3-Ct) were more efficient in decreasing the number of viable cells up to 100% in vitro.
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Integrated photocatalyst adsorbents based on porphyrin anchored to activated carbon granules for water treatment
- Oyim, James, Amuhaya, Edith, Matshitse, Refilwe, Mack, John, Nyokong, Tebello
- Authors: Oyim, James , Amuhaya, Edith , Matshitse, Refilwe , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300101 , vital:57893 , xlink:href="https://doi.org/10.1016/j.cartre.2022.100191"
- Description: Integration of adsorption and photocatalysis processes can lead to several benefits in water treatment. Integrating well-known adsorbents with photocatalysts ensures that all the interesting components are preserved and helps to overcome the serious downsides of each material and technique when operated independently. In this work, we introduce a new concept of combining both absorption and photodegradation mechanisms using organic photocatalytic adsorbents for water purification. This was achieved by formulating photosensitizing hybrids based on a newly synthesized chloroindium (III) 5,10,15,20-tetrakis(4-acetamidophenyl) porphyrin (InTAAP) compound, anchored on oxygen functionalized coconut shell-based activated carbon granules supports. The fashioned integrated photocatalyst adsorbent hybrid (InTAAP(ACO)) was then studied for their adsorption and photodegradation efficiency using methylene blue dye, where InTAAP(ACO) showed excellent photocatalytic activity compared to ACO and unfunctionalized activated carbon granules (AC), with appreciably high and adsorption properties as AC and ACO.
- Full Text:
- Authors: Oyim, James , Amuhaya, Edith , Matshitse, Refilwe , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300101 , vital:57893 , xlink:href="https://doi.org/10.1016/j.cartre.2022.100191"
- Description: Integration of adsorption and photocatalysis processes can lead to several benefits in water treatment. Integrating well-known adsorbents with photocatalysts ensures that all the interesting components are preserved and helps to overcome the serious downsides of each material and technique when operated independently. In this work, we introduce a new concept of combining both absorption and photodegradation mechanisms using organic photocatalytic adsorbents for water purification. This was achieved by formulating photosensitizing hybrids based on a newly synthesized chloroindium (III) 5,10,15,20-tetrakis(4-acetamidophenyl) porphyrin (InTAAP) compound, anchored on oxygen functionalized coconut shell-based activated carbon granules supports. The fashioned integrated photocatalyst adsorbent hybrid (InTAAP(ACO)) was then studied for their adsorption and photodegradation efficiency using methylene blue dye, where InTAAP(ACO) showed excellent photocatalytic activity compared to ACO and unfunctionalized activated carbon granules (AC), with appreciably high and adsorption properties as AC and ACO.
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Low-Symmetry Phthalocyanines Bearing Carboxy-Groups
- Bunin, Dmitry A, Ndebele, Nobuhle, Martynov, Alexander G, Mack, John, Gorbunova, Yulia G, Nyokong, Tebello
- Authors: Bunin, Dmitry A , Ndebele, Nobuhle , Martynov, Alexander G , Mack, John , Gorbunova, Yulia G , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/231262 , vital:49870 , xlink:href="https://doi.org/10.3390/molecules27020524" "
- Description: The synthesis and characterization of A3B-type phthalocyanines, ZnPc1–4, bearing bulky 2,6-diisopropylphenoxy-groups or chlorine atoms on isoindoline units “A” and either one or two carboxylic anchors on isoindoline unit “B” are reported. A comparison of molecular modelling with the conventional time dependent—density functional theory (TD-DFT) approach and its simplified sTD-DFT approximation provides further evidence that the latter method accurately reproduces the key trends in the spectral properties, providing colossal savings in computer time for quite large molecules. This demonstrates that it is a valuable tool for guiding the rational design of new phthalocyanines for practical applications.
- Full Text:
- Authors: Bunin, Dmitry A , Ndebele, Nobuhle , Martynov, Alexander G , Mack, John , Gorbunova, Yulia G , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/231262 , vital:49870 , xlink:href="https://doi.org/10.3390/molecules27020524" "
- Description: The synthesis and characterization of A3B-type phthalocyanines, ZnPc1–4, bearing bulky 2,6-diisopropylphenoxy-groups or chlorine atoms on isoindoline units “A” and either one or two carboxylic anchors on isoindoline unit “B” are reported. A comparison of molecular modelling with the conventional time dependent—density functional theory (TD-DFT) approach and its simplified sTD-DFT approximation provides further evidence that the latter method accurately reproduces the key trends in the spectral properties, providing colossal savings in computer time for quite large molecules. This demonstrates that it is a valuable tool for guiding the rational design of new phthalocyanines for practical applications.
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A Sn (iv) porphyrin with mitochondria targeting properties for enhanced photodynamic activity against MCF-7 cells
- Babu, Balaji, Mack, John, Nyokong, Tebello
- Authors: Babu, Balaji , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/230897 , vital:49829 , xlink:href="https://doi.org/10.1039/D2NJ00350C"
- Description: Two readily synthesized Sn(IV) porphyrins (SnP, SnPH) have been prepared with and without the cationic triphenylphosphonium moiety (TPP+), which have high singlet oxygen quantum yields (ca. 0.72) and long triplet state lifetimes. The Sn(IV) porphyrin with a TPP+ moiety (SnPH) exhibits favorable photodynamic activity against MCF-7 cells with IC50 values of 2.9 μM. SnPH exhibits higher cellular uptake than SnP in MCF-7 cells. A Rhodamine 123 (Rh123) assay showed that SnPH targets mitochondria and induces apoptosis by generating reactive oxygen species. The results demonstrate that this structural modification strategy merits further in-depth study.
- Full Text:
- Authors: Babu, Balaji , Mack, John , Nyokong, Tebello
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/230897 , vital:49829 , xlink:href="https://doi.org/10.1039/D2NJ00350C"
- Description: Two readily synthesized Sn(IV) porphyrins (SnP, SnPH) have been prepared with and without the cationic triphenylphosphonium moiety (TPP+), which have high singlet oxygen quantum yields (ca. 0.72) and long triplet state lifetimes. The Sn(IV) porphyrin with a TPP+ moiety (SnPH) exhibits favorable photodynamic activity against MCF-7 cells with IC50 values of 2.9 μM. SnPH exhibits higher cellular uptake than SnP in MCF-7 cells. A Rhodamine 123 (Rh123) assay showed that SnPH targets mitochondria and induces apoptosis by generating reactive oxygen species. The results demonstrate that this structural modification strategy merits further in-depth study.
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Promotion of Catalytic Oxygen Reduction Reactions
- Wei, Yuqin, Zhao, Long, Yuan, Rui, Xue, Zhaoli, Mack, John, Chivumba, Choonzo, Nyokong, Tebello, Zhang, Jianming
- Authors: Wei, Yuqin , Zhao, Long , Yuan, Rui , Xue, Zhaoli , Mack, John , Chivumba, Choonzo , Nyokong, Tebello , Zhang, Jianming
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300347 , vital:57919 , xlink:href="https://doi.org/10.1021/acs.inorgchem.2c01591"
- Description: Three ABAB-type cobalt meso-tetraarylporphyrins with fluorine (F-CoPor), acetic acid (AC-CoPor), and cyanoacetic acid (CN-CoPor) groups at the para-positions of phenyl rings at the 10,20-positions are synthesized and evaluated as catalysts for oxygen reduction reactions (ORRs). In density functional theory calculations, the frontier molecular orbitals of these complexes were found to be stabilized relative to model complexes with electron-withdrawing atoms or moieties on the meso-aryl rings. Electrochemical measurements suggest that electrodes with CN-CoPor (CN-CoPor/C) exhibit the most positive ORR potential values and the highest limiting current density in both acidic and alkali electrolytes, while the F-CoPor/C electrocatalyst exhibits extremely low ORR performance. The electron transfer numbers for the electrocatalysts are more than 3.0, indicating that a mixture of 2- and 4-electron transfer pathways occurs. The results demonstrate that coupling the hydrogen bonding properties and electron-withdrawing abilities through rational design of the substituent at the meso-position is an efficient way to modify the ORR performance.
- Full Text:
- Authors: Wei, Yuqin , Zhao, Long , Yuan, Rui , Xue, Zhaoli , Mack, John , Chivumba, Choonzo , Nyokong, Tebello , Zhang, Jianming
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/300347 , vital:57919 , xlink:href="https://doi.org/10.1021/acs.inorgchem.2c01591"
- Description: Three ABAB-type cobalt meso-tetraarylporphyrins with fluorine (F-CoPor), acetic acid (AC-CoPor), and cyanoacetic acid (CN-CoPor) groups at the para-positions of phenyl rings at the 10,20-positions are synthesized and evaluated as catalysts for oxygen reduction reactions (ORRs). In density functional theory calculations, the frontier molecular orbitals of these complexes were found to be stabilized relative to model complexes with electron-withdrawing atoms or moieties on the meso-aryl rings. Electrochemical measurements suggest that electrodes with CN-CoPor (CN-CoPor/C) exhibit the most positive ORR potential values and the highest limiting current density in both acidic and alkali electrolytes, while the F-CoPor/C electrocatalyst exhibits extremely low ORR performance. The electron transfer numbers for the electrocatalysts are more than 3.0, indicating that a mixture of 2- and 4-electron transfer pathways occurs. The results demonstrate that coupling the hydrogen bonding properties and electron-withdrawing abilities through rational design of the substituent at the meso-position is an efficient way to modify the ORR performance.
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Structural modification of RhIIItriarylcorroles for enhanced electrocatalyzed hydrogen evolution reactions
- Zhu, Weihua, Li, Lihua, Wang, Yu, Mack, John, Dingiswayo, Somila, Nyokong, Tebello, Liang, Xu
- Authors: Zhu, Weihua , Li, Lihua , Wang, Yu , Mack, John , Dingiswayo, Somila , Nyokong, Tebello , Liang, Xu
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229933 , vital:49724 , xlink:href="https://doi.org/10.1016/j.dyepig.2021.110046"
- Description: A series of A3 type RhIIItriarylcorroles 2a-c with different meso-substituents with differing electron-donating and withdrawing properties and two A2B type RhIIItriarylcorroles 4a-b with meso-methylthiophenyls at the B position have been prepared and characterized. An analysis of structure-property relationships of 2a-c and 4a-b has been carried out by comparing the optical spectroscopy and electrochemistry of the dyes to trends predicted in DFT and TD-DFT calculations. Rational structural modification strategies that enhance the suitability of 2a-c for use as highly efficient catalysts for hydrogen evolution reactions on glassy carbon electrodes coated with 2a-c/reduced graphene oxide composites and of 4a-b in surface-modified Au electrodes are explored.
- Full Text:
- Authors: Zhu, Weihua , Li, Lihua , Wang, Yu , Mack, John , Dingiswayo, Somila , Nyokong, Tebello , Liang, Xu
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/229933 , vital:49724 , xlink:href="https://doi.org/10.1016/j.dyepig.2021.110046"
- Description: A series of A3 type RhIIItriarylcorroles 2a-c with different meso-substituents with differing electron-donating and withdrawing properties and two A2B type RhIIItriarylcorroles 4a-b with meso-methylthiophenyls at the B position have been prepared and characterized. An analysis of structure-property relationships of 2a-c and 4a-b has been carried out by comparing the optical spectroscopy and electrochemistry of the dyes to trends predicted in DFT and TD-DFT calculations. Rational structural modification strategies that enhance the suitability of 2a-c for use as highly efficient catalysts for hydrogen evolution reactions on glassy carbon electrodes coated with 2a-c/reduced graphene oxide composites and of 4a-b in surface-modified Au electrodes are explored.
- Full Text:
A simple quinoline-thiophene Schiff base turn-off chemosensor for Hg2+ detection
- Musikavanhu, Brian, Muthusamy, Selvaraj, Zhu, Dongwei, Xue, Zhaoli, Yu, Qian, Chivumba, Choonzo N, Mack, John, Nyokong, Tebello, Wang, Shengjun, Zhao, Long
- Authors: Musikavanhu, Brian , Muthusamy, Selvaraj , Zhu, Dongwei , Xue, Zhaoli , Yu, Qian , Chivumba, Choonzo N , Mack, John , Nyokong, Tebello , Wang, Shengjun , Zhao, Long
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/230362 , vital:49771 , xlink:href="https://doi.org/10.1016/j.saa.2021.120338"
- Description: A new Schiff base probe (QT) consisting of 8-aminoquinoline (Q) and thiophene-2-carboxaldehyde (T) moieties has been synthesized. QT undergoes chelation-enhanced fluorescence quenching when exposed to Hg2+ due to coordination by the sulfur and nitrogen atoms of QT thus forming a facile “turn-off” sensor. The formation of the chelation complex was confirmed by UV–visible absorption and emission spectral measurements, 1H NMR titration and density functional theory calculations. These studies revealed that the probe exhibits high selectivity and sensitivity towards Hg2+ in the presence of other common metal ions. A low detection limit of 23.4 nM was determined and a Job plot confirmed a 2:1 stoichiometry between QT and Hg2+. The potential utility of QT as a sensor for Hg2+ ions in human HeLa cells was determined by confocal fluorescence microscopy, and its suitability for use in the field with environmental samples was tested with Whatman filter paper strips.
- Full Text:
- Authors: Musikavanhu, Brian , Muthusamy, Selvaraj , Zhu, Dongwei , Xue, Zhaoli , Yu, Qian , Chivumba, Choonzo N , Mack, John , Nyokong, Tebello , Wang, Shengjun , Zhao, Long
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/230362 , vital:49771 , xlink:href="https://doi.org/10.1016/j.saa.2021.120338"
- Description: A new Schiff base probe (QT) consisting of 8-aminoquinoline (Q) and thiophene-2-carboxaldehyde (T) moieties has been synthesized. QT undergoes chelation-enhanced fluorescence quenching when exposed to Hg2+ due to coordination by the sulfur and nitrogen atoms of QT thus forming a facile “turn-off” sensor. The formation of the chelation complex was confirmed by UV–visible absorption and emission spectral measurements, 1H NMR titration and density functional theory calculations. These studies revealed that the probe exhibits high selectivity and sensitivity towards Hg2+ in the presence of other common metal ions. A low detection limit of 23.4 nM was determined and a Job plot confirmed a 2:1 stoichiometry between QT and Hg2+. The potential utility of QT as a sensor for Hg2+ ions in human HeLa cells was determined by confocal fluorescence microscopy, and its suitability for use in the field with environmental samples was tested with Whatman filter paper strips.
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Validity of categories related to gender identity in ICD-11 and DSM-5 among transgender individuals who seek gender-affirming medical procedures
- Robles, Rebeca, Keeley, Jared W, Vega-Ramírez, H, Cruz-Islas, Jeremy, Rodríguez-Pérez, Victor, Sharan, Pratap, Purnima, Shivani, Rao, Ravindra, Rodrigues-Lobato, María I, Soll, Bianca, Askevis-Leherpeux, Françoise, Roelandt, Jean-Luc, Campbell, Megan, Grobler, Gerhard, Stein, Dan H, Khoury, Brigitte, El Khoury, Joseph, Fresán, Ana, Medina-Mora, María, Reed, Geoffrey M
- Authors: Robles, Rebeca , Keeley, Jared W , Vega-Ramírez, H , Cruz-Islas, Jeremy , Rodríguez-Pérez, Victor , Sharan, Pratap , Purnima, Shivani , Rao, Ravindra , Rodrigues-Lobato, María I , Soll, Bianca , Askevis-Leherpeux, Françoise , Roelandt, Jean-Luc , Campbell, Megan , Grobler, Gerhard , Stein, Dan H , Khoury, Brigitte , El Khoury, Joseph , Fresán, Ana , Medina-Mora, María , Reed, Geoffrey M
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302589 , vital:58210 , xlink:href="https://doi.org/10.1016/j.ijchp.2021.100281"
- Description: Background/Objective: The most recent versions of the two main mental disorders classifications—the World Health Organization's ICD-11 and the American Psychiatric Association's DSM–5—differ substantially in their diagnostic categories related to transgender identity. ICD-11 gender incongruence (GI), in contrast to DSM-5 gender dysphoria (GD), is explicitly not a mental disorder; neither distress nor dysfunction is a required feature. The objective was compared ICD-11 and DSM-5 diagnostic requirements in terms of their sensitivity, specificity, discriminability and ability to predict the use of gender-affirming medical procedures. Method: A total of 649 of transgender adults in six countries completed a retrospective structured interview. Results: Using ROC analysis, sensitivity of the diagnostic requirements was equivalent for both systems, but ICD-11 showed greater specificity than DSM-5. Regression analyses indicated that history of hormones and/or surgery was predicted by variables that are an intrinsic aspect of GI/GD more than by distress and dysfunction. IRT analyses showed that the ICD-11 diagnostic formulation was more parsimonious and contained more information about caseness than the DSM-5 model. Conclusions: This study supports the ICD-11 position that GI/GD is not a mental disorder; additional diagnostic requirements of distress and/or dysfunction in DSM-5 reduce the predictive power of the diagnostic model.
- Full Text:
- Authors: Robles, Rebeca , Keeley, Jared W , Vega-Ramírez, H , Cruz-Islas, Jeremy , Rodríguez-Pérez, Victor , Sharan, Pratap , Purnima, Shivani , Rao, Ravindra , Rodrigues-Lobato, María I , Soll, Bianca , Askevis-Leherpeux, Françoise , Roelandt, Jean-Luc , Campbell, Megan , Grobler, Gerhard , Stein, Dan H , Khoury, Brigitte , El Khoury, Joseph , Fresán, Ana , Medina-Mora, María , Reed, Geoffrey M
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302589 , vital:58210 , xlink:href="https://doi.org/10.1016/j.ijchp.2021.100281"
- Description: Background/Objective: The most recent versions of the two main mental disorders classifications—the World Health Organization's ICD-11 and the American Psychiatric Association's DSM–5—differ substantially in their diagnostic categories related to transgender identity. ICD-11 gender incongruence (GI), in contrast to DSM-5 gender dysphoria (GD), is explicitly not a mental disorder; neither distress nor dysfunction is a required feature. The objective was compared ICD-11 and DSM-5 diagnostic requirements in terms of their sensitivity, specificity, discriminability and ability to predict the use of gender-affirming medical procedures. Method: A total of 649 of transgender adults in six countries completed a retrospective structured interview. Results: Using ROC analysis, sensitivity of the diagnostic requirements was equivalent for both systems, but ICD-11 showed greater specificity than DSM-5. Regression analyses indicated that history of hormones and/or surgery was predicted by variables that are an intrinsic aspect of GI/GD more than by distress and dysfunction. IRT analyses showed that the ICD-11 diagnostic formulation was more parsimonious and contained more information about caseness than the DSM-5 model. Conclusions: This study supports the ICD-11 position that GI/GD is not a mental disorder; additional diagnostic requirements of distress and/or dysfunction in DSM-5 reduce the predictive power of the diagnostic model.
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Characterising the shared genetic influences between schizophrenia and subcortical brain regions
- Wooton, Olivia, Campbell, Megan, Jahanshad, Neda, Thompson, Paul, Stein, Dan J, Dalvie, Shareefa
- Authors: Wooton, Olivia , Campbell, Megan , Jahanshad, Neda , Thompson, Paul , Stein, Dan J , Dalvie, Shareefa
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302450 , vital:58197 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.533"
- Description: Background: Abnormalities in brain structural volumes are well established in schizophrenia (SZ) and have been proposed as an endophenotype for the disorder. Despite increasing interest in the genetic relationship between brain structural volumes and SZ, our knowledge of the genetic overlap between the phenotypes is limited. This study aims to extend our current understanding of the shared genetic influences between SZ and subcortical brain volumes using data from the latest genome-wide association studies for the respective phenotypes (GWAS) and novel statistical approaches. Additionally, we will explore whether the association between schizophrenia and abnormal regional brain volumes is causal in nature. Methods: Summary statistics were obtained from the largest Psychiatric Genomic Consortium (PGC)-SZ GWAS (Ncase = 69,369, Ncontrol = 236,642) and the CHARGEENIGMA-UKBB GWAS of volumetric measures for eight subcortical brain regions (the nucleus accumbens, amygdala, brainstem, caudate nucleus, hippocampus, globus pallidus, putamen, and thalamus), and total intracranial volume (N = 30,983 - 40,380). Single nucleotide polymorphism (SNP) effect concordance analysis (SECA) was used to assess pleiotropy and concordance. Genetic correlation was assessed using linkage disequilibrium score regression (LDSR) and the pleiotropy informed conditional FDR approach was applied to identify SNPs associated with SZ conditional on their association with subcortical brain volumes. Mendelian randomization (MR) was used to test for causal association between SZ and each brain region. Results: There was evidence of global pleiotropy between SZ, and all examined subcortical brain regions. Inverse concordance between the genetic determinants of SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus was observed. Increased statistical power to detect SZ risk loci was shown when conditioning on subcortical brain volumes. There was no significant evidence for a causal effect of any of the examined brain regions on schizophrenia risk. Discussion: These data confirm the shared genetic basis of SZ and specific intracranial and subcortical brain volumes and provide evidence for negative concordance between SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus. Leveraging the genetic overlap between SZ and subcortical brain volumes has the potential to provide novel insights into the biological basis of the disorder.
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- Authors: Wooton, Olivia , Campbell, Megan , Jahanshad, Neda , Thompson, Paul , Stein, Dan J , Dalvie, Shareefa
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302450 , vital:58197 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.533"
- Description: Background: Abnormalities in brain structural volumes are well established in schizophrenia (SZ) and have been proposed as an endophenotype for the disorder. Despite increasing interest in the genetic relationship between brain structural volumes and SZ, our knowledge of the genetic overlap between the phenotypes is limited. This study aims to extend our current understanding of the shared genetic influences between SZ and subcortical brain volumes using data from the latest genome-wide association studies for the respective phenotypes (GWAS) and novel statistical approaches. Additionally, we will explore whether the association between schizophrenia and abnormal regional brain volumes is causal in nature. Methods: Summary statistics were obtained from the largest Psychiatric Genomic Consortium (PGC)-SZ GWAS (Ncase = 69,369, Ncontrol = 236,642) and the CHARGEENIGMA-UKBB GWAS of volumetric measures for eight subcortical brain regions (the nucleus accumbens, amygdala, brainstem, caudate nucleus, hippocampus, globus pallidus, putamen, and thalamus), and total intracranial volume (N = 30,983 - 40,380). Single nucleotide polymorphism (SNP) effect concordance analysis (SECA) was used to assess pleiotropy and concordance. Genetic correlation was assessed using linkage disequilibrium score regression (LDSR) and the pleiotropy informed conditional FDR approach was applied to identify SNPs associated with SZ conditional on their association with subcortical brain volumes. Mendelian randomization (MR) was used to test for causal association between SZ and each brain region. Results: There was evidence of global pleiotropy between SZ, and all examined subcortical brain regions. Inverse concordance between the genetic determinants of SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus was observed. Increased statistical power to detect SZ risk loci was shown when conditioning on subcortical brain volumes. There was no significant evidence for a causal effect of any of the examined brain regions on schizophrenia risk. Discussion: These data confirm the shared genetic basis of SZ and specific intracranial and subcortical brain volumes and provide evidence for negative concordance between SZ and volumes of the nucleus accumbens, amygdala, brainstem, hippocampus, and thalamus. Leveraging the genetic overlap between SZ and subcortical brain volumes has the potential to provide novel insights into the biological basis of the disorder.
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Systematic review of genome-wide association studies of anxiety disorders and neuroticism
- Van Der Walt, Kristien, Campbell, Megan, Stein, Dan J, Dalvie, Shareefa
- Authors: Van Der Walt, Kristien , Campbell, Megan , Stein, Dan J , Dalvie, Shareefa
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302532 , vital:58205 , xlink:href="https://doi.org//10.1080/15622975.2022.2099970"
- Description: Objectives: To summarise SNP associations identified by genome-wide association studies (GWASs) of anxiety disorders and neuroticism; to appraise the quality of individual studies, and to assess the ancestral diversity of study participants. Methods: We searched PubMed, Scopus, PsychInfo and PubPsych for GWASs of anxiety disorders, non-diagnostic traits (such as anxiety sensitivity), and neuroticism, and extracted all SNPs that surpassed genome-wide significance. We graded study quality using Q-genie scores and reviewed the ancestral diversity of included participants. Results: 32 studies met our inclusion criteria. A total of 563 independent significant variants were identified, of which 29 were replicated nominally in independent samples, and 3 were replicated significantly. The studies had good global quality, but many smaller studies were underpowered. Phenotypic heterogeneity for anxiety (and less so for neuroticism) seemed to reflect the complexity of capturing this trait. Ancestral diversity was poor, with 70% of studies including only populations of European ancestry. Conclusion: The functionality of genes identified by GWASs of anxiety and neuroticism deserves further investigation. Future GWASs should have larger sample sizes, more rigorous phenotyping and include more ancestrally diverse population groups.
- Full Text:
- Authors: Van Der Walt, Kristien , Campbell, Megan , Stein, Dan J , Dalvie, Shareefa
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302532 , vital:58205 , xlink:href="https://doi.org//10.1080/15622975.2022.2099970"
- Description: Objectives: To summarise SNP associations identified by genome-wide association studies (GWASs) of anxiety disorders and neuroticism; to appraise the quality of individual studies, and to assess the ancestral diversity of study participants. Methods: We searched PubMed, Scopus, PsychInfo and PubPsych for GWASs of anxiety disorders, non-diagnostic traits (such as anxiety sensitivity), and neuroticism, and extracted all SNPs that surpassed genome-wide significance. We graded study quality using Q-genie scores and reviewed the ancestral diversity of included participants. Results: 32 studies met our inclusion criteria. A total of 563 independent significant variants were identified, of which 29 were replicated nominally in independent samples, and 3 were replicated significantly. The studies had good global quality, but many smaller studies were underpowered. Phenotypic heterogeneity for anxiety (and less so for neuroticism) seemed to reflect the complexity of capturing this trait. Ancestral diversity was poor, with 70% of studies including only populations of European ancestry. Conclusion: The functionality of genes identified by GWASs of anxiety and neuroticism deserves further investigation. Future GWASs should have larger sample sizes, more rigorous phenotyping and include more ancestrally diverse population groups.
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The genetic architecture of the corpus callosum and its subregions
- Campbell, Megan, Dalvie, Shareefa, Shadrin, Alexey, van der Meer, Dennis, Andreassen, Ola, Stein, Dan J, Rokicki, Jaroslav
- Authors: Campbell, Megan , Dalvie, Shareefa , Shadrin, Alexey , van der Meer, Dennis , Andreassen, Ola , Stein, Dan J , Rokicki, Jaroslav
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302542 , vital:58206 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.263"
- Description: Background: Regional surface area and thickness of the cerebral cortex and volume of subcortical structures are highly heritable brain morphological features with complex genetic architectures, involving many common genetic variants with small effect sizes. However, the genetic architecture of the corpus callosum (CC) and its subregions remains largely unclear. We aim to determine the heritability and genetic architecture of CC volume and each subregion and the extent to which this overlaps with that of psychiatric disorders. Methods: Genetic and T1-weighted MRI data of 40,894 individuals from the UK-biobank was used to construct a multivariate GWAS. Here, we utilized a multivariate approach (Multivariate Omnibus Statistical Test, MOSTest) to assess the distributive effects of common variants across the five subregions of the CC (posterior, mid posterior, central, mid anterior and anterior) obtained by running the automatic subcortical segmentation algorithm in FreeSurfer 5.3. Gene-set enrichment analyses were performed using MAGMA. Linkage disequilibrium score regression was used to determine the SNP-based heritability of the CC and will be used to assess the genetic correlation between each subregion and a variety of psychiatric disorders. Results: Following MOSTest, 70 independent loci show pooled effects across the 5 subregions of the CC (p more than 5×10-8). Using LDSC, we found evidence to suggest that CC volume is heritable (h2SNP= 0.38, SE=0.03). Significant variants showed enrichment in pathways related to regulation of the nervous system and cell development, neurogenesis, and regulation of neuron differentiation. Gene-set analysis revealed 156 significant genes (p is less than 2.6x10-6). Many of the significant SNPs have been previously associated with white matter hyperintensity volume as well as a range of psychiatric disorders. Discussion: Here we provide the first preliminary evidence to suggest that volume of the CC is heritable. Gene set enrichment analyses identified pathways related to neuron development and neurogenesis, suggesting that CC alteration may have an independent developmental origin. Further investigation into the shared genetic architecture of CC subregions and psychiatric disorders may provide novel insight into disease manifestation.
- Full Text:
- Authors: Campbell, Megan , Dalvie, Shareefa , Shadrin, Alexey , van der Meer, Dennis , Andreassen, Ola , Stein, Dan J , Rokicki, Jaroslav
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302542 , vital:58206 , xlink:href="https://doi.org/10.1016/j.euroneuro.2022.07.263"
- Description: Background: Regional surface area and thickness of the cerebral cortex and volume of subcortical structures are highly heritable brain morphological features with complex genetic architectures, involving many common genetic variants with small effect sizes. However, the genetic architecture of the corpus callosum (CC) and its subregions remains largely unclear. We aim to determine the heritability and genetic architecture of CC volume and each subregion and the extent to which this overlaps with that of psychiatric disorders. Methods: Genetic and T1-weighted MRI data of 40,894 individuals from the UK-biobank was used to construct a multivariate GWAS. Here, we utilized a multivariate approach (Multivariate Omnibus Statistical Test, MOSTest) to assess the distributive effects of common variants across the five subregions of the CC (posterior, mid posterior, central, mid anterior and anterior) obtained by running the automatic subcortical segmentation algorithm in FreeSurfer 5.3. Gene-set enrichment analyses were performed using MAGMA. Linkage disequilibrium score regression was used to determine the SNP-based heritability of the CC and will be used to assess the genetic correlation between each subregion and a variety of psychiatric disorders. Results: Following MOSTest, 70 independent loci show pooled effects across the 5 subregions of the CC (p more than 5×10-8). Using LDSC, we found evidence to suggest that CC volume is heritable (h2SNP= 0.38, SE=0.03). Significant variants showed enrichment in pathways related to regulation of the nervous system and cell development, neurogenesis, and regulation of neuron differentiation. Gene-set analysis revealed 156 significant genes (p is less than 2.6x10-6). Many of the significant SNPs have been previously associated with white matter hyperintensity volume as well as a range of psychiatric disorders. Discussion: Here we provide the first preliminary evidence to suggest that volume of the CC is heritable. Gene set enrichment analyses identified pathways related to neuron development and neurogenesis, suggesting that CC alteration may have an independent developmental origin. Further investigation into the shared genetic architecture of CC subregions and psychiatric disorders may provide novel insight into disease manifestation.
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Measuring discrimination experienced by people with a mental illness
- Brohan, Elaine, Thornicroft, Graham, Rüsch, Nicolas, Lasalvia, Antonio, Campbell, Megan, Yalçınkaya-Alkar, Özden, Lanfredi, Mariangela, Ochoa, Susana, Üçok, Alp, Tomás, Catarina, Fadipe, Babatunde, Sebes, Julia, Fiorillo, Andrea, Sampogna, Gaia, Paula, Cristiane Silvestre, Valverde, Leonadis, Schomerus, Georg, Klemm, Pia, Ouali, Uta, Castelein, Stynke, Alexová, Aneta, Oexle, Nathalie, Guimarães, Patrícia Neves, Sportel, Bouwina Esther, Chang, Chih-Cheng, Li, Jie, Shanthi, Chilasagaram, Reneses, Blanca, Bakolis, Ioannis, Evans-Lacko, Sarah
- Authors: Brohan, Elaine , Thornicroft, Graham , Rüsch, Nicolas , Lasalvia, Antonio , Campbell, Megan , Yalçınkaya-Alkar, Özden , Lanfredi, Mariangela , Ochoa, Susana , Üçok, Alp , Tomás, Catarina , Fadipe, Babatunde , Sebes, Julia , Fiorillo, Andrea , Sampogna, Gaia , Paula, Cristiane Silvestre , Valverde, Leonadis , Schomerus, Georg , Klemm, Pia , Ouali, Uta , Castelein, Stynke , Alexová, Aneta , Oexle, Nathalie , Guimarães, Patrícia Neves , Sportel, Bouwina Esther , Chang, Chih-Cheng , Li, Jie , Shanthi, Chilasagaram , Reneses, Blanca , Bakolis, Ioannis , Evans-Lacko, Sarah
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302498 , vital:58202 , xlink:href="https://doi.org/10.1017/S0033291722000630"
- Description: Background: The Discrimination and Stigma Scale (DISC) is a patient-reported outcome measure which assesses experiences of discrimination among persons with a mental illness globally. Methods: This study evaluated whether the psychometric properties of a short-form version, DISC-Ultra Short (DISCUS) (11-item), could be replicated in a sample of people with a wide range of mental disorders from 21 sites in 15 countries/territories, across six global regions. The frequency of experienced discrimination was reported. Scaling assumptions (confirmatory factor analysis, inter-item and item-total correlations), reliability (internal consistency) and validity (convergent validity, known groups method) were investigated in each region, and by diagnosis group. Results: 1195 people participated. The most frequently reported experiences of discrimination were being shunned or avoided at work (48.7%) and discrimination in making or keeping friends (47.2%). Confirmatory factor analysis supported a unidimensional model across all six regions and five diagnosis groups. Convergent validity was confirmed in the total sample and within all regions [ Internalised Stigma of Mental Illness (ISMI-10): 0.28–0.67, stopping self: 0.54–0.72, stigma consciousness: −0.32–0.57], as was internal consistency reliability (α = 0.74–0.84). Known groups validity was established in the global sample with levels of experienced discrimination significantly higher for those experiencing higher depression [Patient Health Questionnaire (PHQ)-2: p more than 0.001], lower mental wellbeing [Warwick-Edinburgh Well-being Scale (WEMWBS): p is less than 0.001], higher suicidal ideation [Beck Hopelessness Scale (BHS)-4: p is less than 0.001] and higher risk of suicidal behaviour [Suicidal Ideation Attributes Scale (SIDAS): p is less than 0.001]. Conclusions: The DISCUS is a reliable and valid unidimensional measure of experienced discrimination for use in global settings with similar properties to the longer DISC. It offers a brief assessment of experienced discrimination for use in clinical and research settings.
- Full Text:
- Authors: Brohan, Elaine , Thornicroft, Graham , Rüsch, Nicolas , Lasalvia, Antonio , Campbell, Megan , Yalçınkaya-Alkar, Özden , Lanfredi, Mariangela , Ochoa, Susana , Üçok, Alp , Tomás, Catarina , Fadipe, Babatunde , Sebes, Julia , Fiorillo, Andrea , Sampogna, Gaia , Paula, Cristiane Silvestre , Valverde, Leonadis , Schomerus, Georg , Klemm, Pia , Ouali, Uta , Castelein, Stynke , Alexová, Aneta , Oexle, Nathalie , Guimarães, Patrícia Neves , Sportel, Bouwina Esther , Chang, Chih-Cheng , Li, Jie , Shanthi, Chilasagaram , Reneses, Blanca , Bakolis, Ioannis , Evans-Lacko, Sarah
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/302498 , vital:58202 , xlink:href="https://doi.org/10.1017/S0033291722000630"
- Description: Background: The Discrimination and Stigma Scale (DISC) is a patient-reported outcome measure which assesses experiences of discrimination among persons with a mental illness globally. Methods: This study evaluated whether the psychometric properties of a short-form version, DISC-Ultra Short (DISCUS) (11-item), could be replicated in a sample of people with a wide range of mental disorders from 21 sites in 15 countries/territories, across six global regions. The frequency of experienced discrimination was reported. Scaling assumptions (confirmatory factor analysis, inter-item and item-total correlations), reliability (internal consistency) and validity (convergent validity, known groups method) were investigated in each region, and by diagnosis group. Results: 1195 people participated. The most frequently reported experiences of discrimination were being shunned or avoided at work (48.7%) and discrimination in making or keeping friends (47.2%). Confirmatory factor analysis supported a unidimensional model across all six regions and five diagnosis groups. Convergent validity was confirmed in the total sample and within all regions [ Internalised Stigma of Mental Illness (ISMI-10): 0.28–0.67, stopping self: 0.54–0.72, stigma consciousness: −0.32–0.57], as was internal consistency reliability (α = 0.74–0.84). Known groups validity was established in the global sample with levels of experienced discrimination significantly higher for those experiencing higher depression [Patient Health Questionnaire (PHQ)-2: p more than 0.001], lower mental wellbeing [Warwick-Edinburgh Well-being Scale (WEMWBS): p is less than 0.001], higher suicidal ideation [Beck Hopelessness Scale (BHS)-4: p is less than 0.001] and higher risk of suicidal behaviour [Suicidal Ideation Attributes Scale (SIDAS): p is less than 0.001]. Conclusions: The DISCUS is a reliable and valid unidimensional measure of experienced discrimination for use in global settings with similar properties to the longer DISC. It offers a brief assessment of experienced discrimination for use in clinical and research settings.
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Landscape drivers of mammal habitat use and richness in a protected area and its surrounding agricultural lands
- Bellón, Beatriz, Henry, Dominic AW, Renaud, Pierre-Cyril, Roque, Fabio de O, Santos, Cyntia Cavalcante, Melo, Isabel, Arvor, Damien, de Vos, Alta
- Authors: Bellón, Beatriz , Henry, Dominic AW , Renaud, Pierre-Cyril , Roque, Fabio de O , Santos, Cyntia Cavalcante , Melo, Isabel , Arvor, Damien , de Vos, Alta
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/415873 , vital:71296 , xlink:href="https://doi.org/10.1016/j.agee.2022.107989"
- Description: Protected areas (PAs) are key to conserving biodiversity and ecosystem services globally, but their effectiveness increasingly depends on the ability of the surrounding agricultural areas to support biodiversity and secure connectivity at the landscape level. This requires monitoring the broader multi-use landscapes in which PAs exist and identifying the landscape characteristics that support rich, functional wildlife communities. Here, we investigated the species richness and habitat use patterns of a mammal community in relation to different landscape variables and land use and land cover (LULC) types in a PA and its surrounding agricultural lands in the Cerrado. We first used a hierarchical multi-species occupancy model with input camera trap data and eight landscape variables (vegetation productivity, phenology, and heterogeneity, distance to water, roads and settlements, and the PA, slope, and elevation) to estimate the species richness and habitat use of 29 mammal species across the landscape. We then analyzed the relationships between the species richness and habitat use and the landscape variables at the site level, as well as the distribution of species at the landscape level in relation to the different natural and agricultural LULC types.
- Full Text:
- Authors: Bellón, Beatriz , Henry, Dominic AW , Renaud, Pierre-Cyril , Roque, Fabio de O , Santos, Cyntia Cavalcante , Melo, Isabel , Arvor, Damien , de Vos, Alta
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/415873 , vital:71296 , xlink:href="https://doi.org/10.1016/j.agee.2022.107989"
- Description: Protected areas (PAs) are key to conserving biodiversity and ecosystem services globally, but their effectiveness increasingly depends on the ability of the surrounding agricultural areas to support biodiversity and secure connectivity at the landscape level. This requires monitoring the broader multi-use landscapes in which PAs exist and identifying the landscape characteristics that support rich, functional wildlife communities. Here, we investigated the species richness and habitat use patterns of a mammal community in relation to different landscape variables and land use and land cover (LULC) types in a PA and its surrounding agricultural lands in the Cerrado. We first used a hierarchical multi-species occupancy model with input camera trap data and eight landscape variables (vegetation productivity, phenology, and heterogeneity, distance to water, roads and settlements, and the PA, slope, and elevation) to estimate the species richness and habitat use of 29 mammal species across the landscape. We then analyzed the relationships between the species richness and habitat use and the landscape variables at the site level, as well as the distribution of species at the landscape level in relation to the different natural and agricultural LULC types.
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Lessons from COVID-19 for wildlife ranching in a changing world
- Clements, Hayley S, Child, Matthew F, Lindeque, Lehman, Lunderstedt, Kyra, de Vos, Alta
- Authors: Clements, Hayley S , Child, Matthew F , Lindeque, Lehman , Lunderstedt, Kyra , de Vos, Alta
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/415886 , vital:71297 , xlink:href="https://doi.org/10.1038/s41893-022-00961-1"
- Description: The COVID-19 pandemic provided an opportunity to assess the impacts of a global disturbance on conservation land uses and learn from responses to the crisis to enable more resilient conservation systems. To understand socio-economic responses of diverse wildlife working lands to COVID-19, we surveyed owners and managers of 78 private wildlife ranches (wildlife working lands), 23 agricultural farms (conventional working lands) and six public protected areas (conventional conservation lands) in South Africa. Most protected areas lost more than 75% of their revenues during 2020, while most agricultural farms lost less than 10%. The impact on wildlife ranches was more varied. Ranches with more diverse activities, particularly mixed wildlife–agriculture systems, lost less revenue, shifting their activities from those heavily impacted (international ecotourism, trophy hunting) to those less afected (for example, wildlife meat, livestock). This adaptive capacity suggests that wildlife-based enterprises could represent key ecosystem-based adaptations, providing lessons for integrated global policies that seek to incorporate private land models in the 2030 Biodiversity Framework.
- Full Text:
- Authors: Clements, Hayley S , Child, Matthew F , Lindeque, Lehman , Lunderstedt, Kyra , de Vos, Alta
- Date: 2022
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/415886 , vital:71297 , xlink:href="https://doi.org/10.1038/s41893-022-00961-1"
- Description: The COVID-19 pandemic provided an opportunity to assess the impacts of a global disturbance on conservation land uses and learn from responses to the crisis to enable more resilient conservation systems. To understand socio-economic responses of diverse wildlife working lands to COVID-19, we surveyed owners and managers of 78 private wildlife ranches (wildlife working lands), 23 agricultural farms (conventional working lands) and six public protected areas (conventional conservation lands) in South Africa. Most protected areas lost more than 75% of their revenues during 2020, while most agricultural farms lost less than 10%. The impact on wildlife ranches was more varied. Ranches with more diverse activities, particularly mixed wildlife–agriculture systems, lost less revenue, shifting their activities from those heavily impacted (international ecotourism, trophy hunting) to those less afected (for example, wildlife meat, livestock). This adaptive capacity suggests that wildlife-based enterprises could represent key ecosystem-based adaptations, providing lessons for integrated global policies that seek to incorporate private land models in the 2030 Biodiversity Framework.
- Full Text: