Skills for communicating severe acute respiratory syndrome-coronavirus-2 result to patients and/or relatives
- Adeniyi, Oladele Vincent, Kayembe, Dominique K
- Authors: Adeniyi, Oladele Vincent , Kayembe, Dominique K
- Date: 2021
- Subjects: COVID-19 Structured model Medical consultation Article
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/7236 , vital:53095 , xlink:href="https://doi.org/10.4102/safp.v63i1.5221"
- Description: Clinicians notify positive results of the severe acute respiratory syndrome coronavirus-2 polymerase chain reaction to patients and/or relatives, whilst short message service (SMS) has been adopted as a means of disseminating negative results. Therefore, clinicians should be adequately equipped to provide telephonic consultation whilst delivering a positive test result to patients. The news of the coronavirus disease 2019 (COVID-19) test result often invokes fear of impending death in patients, especially the elderlies and those with comorbidities. In addition, several survivors have reported persistent symptoms and COVID-19-related stigma, which precludes them from immediate re-integration into their workplaces. Consequently, COVID-19 results are perceived as bad news by the members of the public. This article justifies why COVID-19 test results are bad news and also discusses the notification steps to follow when delivering COVID-19 results, whilst also addressing patients’ immediate concerns. The article concludes by highlighting an important safety net for COVID-19 patients and the attending clinician.
- Full Text:
- Date Issued: 2021
- Authors: Adeniyi, Oladele Vincent , Kayembe, Dominique K
- Date: 2021
- Subjects: COVID-19 Structured model Medical consultation Article
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/7236 , vital:53095 , xlink:href="https://doi.org/10.4102/safp.v63i1.5221"
- Description: Clinicians notify positive results of the severe acute respiratory syndrome coronavirus-2 polymerase chain reaction to patients and/or relatives, whilst short message service (SMS) has been adopted as a means of disseminating negative results. Therefore, clinicians should be adequately equipped to provide telephonic consultation whilst delivering a positive test result to patients. The news of the coronavirus disease 2019 (COVID-19) test result often invokes fear of impending death in patients, especially the elderlies and those with comorbidities. In addition, several survivors have reported persistent symptoms and COVID-19-related stigma, which precludes them from immediate re-integration into their workplaces. Consequently, COVID-19 results are perceived as bad news by the members of the public. This article justifies why COVID-19 test results are bad news and also discusses the notification steps to follow when delivering COVID-19 results, whilst also addressing patients’ immediate concerns. The article concludes by highlighting an important safety net for COVID-19 patients and the attending clinician.
- Full Text:
- Date Issued: 2021
Management approach of patients with violent and aggressive behaviour in a district hospital setting in South Africa
- Adeniyi, Oladele Vincent, Puzi, Ntandazo
- Authors: Adeniyi, Oladele Vincent , Puzi, Ntandazo
- Date: 2021
- Subjects: mental health Emergency medical services violennce Article
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/7284 , vital:53108 , xlink:href="https://doi.org/10.4102/safp.v63i1.5393"
- Description: Background: Given the physical and mental health consequences of tobacco use amongst individuals with mental illness, it was imperative to assess the burden of tobacco use in this population. Aim: This study examined the patterns and factors associated with tobacco use in individuals attending the outpatient unit. Setting: Cecilia Makiwane Hospital Mental Health Department in Eastern Cape province, South Africa. Methods: Lifetime (ever use) use and current use of any tobacco products were examined in a cross-sectional study of 390 individuals between March and June 2020. A logistic regression was fitted to determine the correlates of lifetime and current use of any tobacco products. Results: The rates of ever use and current use of tobacco products were 59.4% and 44.6%, respectively. Of the participants interviewed, lifetime tobacco use was more prevalent amongst individuals with schizophrenia (67.9%) and cannabis-induced disorders (97.3%) and lower in those with major depressive disorders (36.1%) and bipolar and related disorders (43.5%). Men were six times more likely to have ever used or currently use tobacco products in comparison to women. Also, those who had a salaried job or owned a business were over three times more likely to have ever used or currently use tobacco products compared with those receiving government social grants. Conclusions: The prevalence of tobacco use in this study was significantly higher than the general population in the Eastern Cape. Therefore, smoking prevention and cessation interventions targeted at the general population should target this often neglected sub-population in the region. Keywords: aggressive and violent behaviour; assisted user; emergency centres; involuntary user; Mental Health Care Act.
- Full Text:
- Date Issued: 2021
- Authors: Adeniyi, Oladele Vincent , Puzi, Ntandazo
- Date: 2021
- Subjects: mental health Emergency medical services violennce Article
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/11260/7284 , vital:53108 , xlink:href="https://doi.org/10.4102/safp.v63i1.5393"
- Description: Background: Given the physical and mental health consequences of tobacco use amongst individuals with mental illness, it was imperative to assess the burden of tobacco use in this population. Aim: This study examined the patterns and factors associated with tobacco use in individuals attending the outpatient unit. Setting: Cecilia Makiwane Hospital Mental Health Department in Eastern Cape province, South Africa. Methods: Lifetime (ever use) use and current use of any tobacco products were examined in a cross-sectional study of 390 individuals between March and June 2020. A logistic regression was fitted to determine the correlates of lifetime and current use of any tobacco products. Results: The rates of ever use and current use of tobacco products were 59.4% and 44.6%, respectively. Of the participants interviewed, lifetime tobacco use was more prevalent amongst individuals with schizophrenia (67.9%) and cannabis-induced disorders (97.3%) and lower in those with major depressive disorders (36.1%) and bipolar and related disorders (43.5%). Men were six times more likely to have ever used or currently use tobacco products in comparison to women. Also, those who had a salaried job or owned a business were over three times more likely to have ever used or currently use tobacco products compared with those receiving government social grants. Conclusions: The prevalence of tobacco use in this study was significantly higher than the general population in the Eastern Cape. Therefore, smoking prevention and cessation interventions targeted at the general population should target this often neglected sub-population in the region. Keywords: aggressive and violent behaviour; assisted user; emergency centres; involuntary user; Mental Health Care Act.
- Full Text:
- Date Issued: 2021
Genetic diversity, resistance profile of HIV and risk assessment of mother-to-child transmission in pregnant women on anti-retroviral therapy in the Eastern Cape, South Africa
- Authors: Adeniyi, Oladele Vincent
- Date: 2018-12
- Subjects: Antiretroviral agents , AIDS (Disease) in infants
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19817 , vital:43254
- Description: Despite the initiation of life-long ART in HIV-infected pregnant women, the rate and determinants of infant HIV transmission are not known, especially in the poor resource settings of the Eastern Cape, South Africa. Maternal anti-retroviral therapy (ART) is crucial for elimination of mother-to-child transmission (MTCT) of HIV. However, the inevitable risks of emergence of HIV drug resistance poses significant threat to achieving this goal of HIV-free generation and keeping mothers alive. Also, it is unclear if women with high viral load at delivery have acquired clinically relevant mutations, which could confer resistance to the ART, thus, further increasing the risks of motherto- child transmission of HIV-drug resistance strains. In addition to the gaps identified in the prevention of mother-to-child transmission (PMTCT) context, the understanding of regional epidemics is crucial to the broader epidemiological profiling of HIV infections in the country. Despite the rapid influx of foreign nationals to South African and Eastern Cape Province, there has not been any molecular epidemiological studies profiling the HIV diversity in the Eastern Cape. , Thesis (PhD) (Microbiology) -- University of Fort Hare, 2018
- Full Text:
- Date Issued: 2018-12
- Authors: Adeniyi, Oladele Vincent
- Date: 2018-12
- Subjects: Antiretroviral agents , AIDS (Disease) in infants
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19817 , vital:43254
- Description: Despite the initiation of life-long ART in HIV-infected pregnant women, the rate and determinants of infant HIV transmission are not known, especially in the poor resource settings of the Eastern Cape, South Africa. Maternal anti-retroviral therapy (ART) is crucial for elimination of mother-to-child transmission (MTCT) of HIV. However, the inevitable risks of emergence of HIV drug resistance poses significant threat to achieving this goal of HIV-free generation and keeping mothers alive. Also, it is unclear if women with high viral load at delivery have acquired clinically relevant mutations, which could confer resistance to the ART, thus, further increasing the risks of motherto- child transmission of HIV-drug resistance strains. In addition to the gaps identified in the prevention of mother-to-child transmission (PMTCT) context, the understanding of regional epidemics is crucial to the broader epidemiological profiling of HIV infections in the country. Despite the rapid influx of foreign nationals to South African and Eastern Cape Province, there has not been any molecular epidemiological studies profiling the HIV diversity in the Eastern Cape. , Thesis (PhD) (Microbiology) -- University of Fort Hare, 2018
- Full Text:
- Date Issued: 2018-12
Nanohybrid electrocatalyst based on cobalt phthalocyanine-carbon nanotube-reduced graphene oxide for ultrasensitive detection of glucose in human saliva
- Adeniyi, Omotayo, Nwahara, Nnamdi, Mwanza, Daniel, Nyokong, Tebello, Mashazi, Philani N
- Authors: Adeniyi, Omotayo , Nwahara, Nnamdi , Mwanza, Daniel , Nyokong, Tebello , Mashazi, Philani N
- Date: 2021
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/231356 , vital:49880 , xlink:href="https://doi.org/10.1016/j.snb.2021.130723"
- Description: The current diabetes management systems require collecting blood samples via an invasive and painful finger pricking leading to the formation of callus, scarring and loss of sensibility to patients due to continuous monitoring. Therefore, a non-invasive and painless method of determining glucose levels would be desirable to diabetes patients who need constant monitoring. Saliva glucose measurement is a non-invasive alternative for diabetes management. A highly sensitive, stable, and selective non-enzymatic electrochemical sensor that can accurately quantify saliva glucose is required. A single-walled carbon nanotube/reduced graphene oxide/cobalt phthalocyanines nanohybrid modified glassy carbon electrode (GCE-SWCNT/rGO/CoPc) has been fabricated for the non-enzymatic determination of glucose in human saliva. The SWCNT/rGO/CoPc was characterized using various spectroscopic, microscopic, and electrochemical techniques. The synergistic effect between SWCNT, rGO, and CoPc facilitated excellent electron transfer process that improved the sensor sensitivity. The GCE-SWCNT/rGO/CoPc sensor exhibited two linear responses in the 0.30 μM to 0.50 mM and 0.50–5.0 mM glucose concentration ranges, and the detection limit was 0.12 μM. The sensor had an excellent saliva glucose detection sensitivity of 992.4 μA·mM−1·cm−2 and high specificity for glucose in the presence of other coexisting analytes. In addition, it showed good storage stability, reusability, and a fast response time of about 1.2 s. The GCE-SWCNT/rGO/CoPc nanohybrid electrode showed excellent potential for developing accurate, non-invasive, and painless glucose sensing.
- Full Text:
- Date Issued: 2021
- Authors: Adeniyi, Omotayo , Nwahara, Nnamdi , Mwanza, Daniel , Nyokong, Tebello , Mashazi, Philani N
- Date: 2021
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/231356 , vital:49880 , xlink:href="https://doi.org/10.1016/j.snb.2021.130723"
- Description: The current diabetes management systems require collecting blood samples via an invasive and painful finger pricking leading to the formation of callus, scarring and loss of sensibility to patients due to continuous monitoring. Therefore, a non-invasive and painless method of determining glucose levels would be desirable to diabetes patients who need constant monitoring. Saliva glucose measurement is a non-invasive alternative for diabetes management. A highly sensitive, stable, and selective non-enzymatic electrochemical sensor that can accurately quantify saliva glucose is required. A single-walled carbon nanotube/reduced graphene oxide/cobalt phthalocyanines nanohybrid modified glassy carbon electrode (GCE-SWCNT/rGO/CoPc) has been fabricated for the non-enzymatic determination of glucose in human saliva. The SWCNT/rGO/CoPc was characterized using various spectroscopic, microscopic, and electrochemical techniques. The synergistic effect between SWCNT, rGO, and CoPc facilitated excellent electron transfer process that improved the sensor sensitivity. The GCE-SWCNT/rGO/CoPc sensor exhibited two linear responses in the 0.30 μM to 0.50 mM and 0.50–5.0 mM glucose concentration ranges, and the detection limit was 0.12 μM. The sensor had an excellent saliva glucose detection sensitivity of 992.4 μA·mM−1·cm−2 and high specificity for glucose in the presence of other coexisting analytes. In addition, it showed good storage stability, reusability, and a fast response time of about 1.2 s. The GCE-SWCNT/rGO/CoPc nanohybrid electrode showed excellent potential for developing accurate, non-invasive, and painless glucose sensing.
- Full Text:
- Date Issued: 2021
Design of Immunobiosensors for Detection of Tumor-Associated Anti-P53 Autoantibodies: Method Development
- Authors: Adeniyi, Omotayo Kayode
- Date: 2020
- Subjects: Lungs Cancer Early detection , Autoantibodies , Biosensors , Immunochemistry , Biochemical markers , p53 antioncogene
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/162988 , vital:41002 , 10.21504/10962/162988
- Description: Thesis (PhD)--Rhodes University, Science Faculty, Department of Chemistry, 2020. , Detection and profiling of circulating tumor-associated autoantibodies (TAAbs) are useful for screening and early-stage diagnosis of asymptomatic lung cancer. Immunobiosensor technologies aimed to accomplish the highly sensitive, rapid and low-cost detection of TAAbs can improve the early-stage detection of lung cancer. Immunobiosensors for the detection of anti-P53-tumour associated autoantibodies have been developed in this work. The design of sensing interfaces with immobilized P53 protein (P53ag) as a sensing element layer on a solid interface was investigated. Several methods of detecting anti-P53-antibodies (anti-P53ab) were investigated. These methods are label-free detection using electrochemical impedance spectroscopy (EIS) and two label techniques. The label-free electrochemical techniques utilize gold electrode pre-modified with a conducting layer of electrochemically grafted phenylethylamine for covalent immobilization of P53ag. The limit of anti-P53ab detection with the label-free EIS was 103.0 pg.ml-1. The labeled technique developed utilizes fluorescent, and peroxidase-like nanomaterial labeled antibody as a detection probe. For the fluorescence detection, fluorescent silica nanoparticles were synthesized by overloading FITC into the silica matrix and conjugated to detection antibody (anti-IgG). The detection of the anti-P53ab was based on the dissolution of the silica nanoparticles to release the loaded dye as a signal amplification strategy. The fluorescence detection was carried out on a microplate, and magnetic bead modified P53-antigen platforms and limit of detection (LoD) were 42.0 fg.ml-1 and 3.3 fg.ml-1 for anti-P53ab; respectively. Fe3O4@SiNP-APTES-Au@Pd hybrid nanoparticles were synthesized, and their peroxidase-like activity and colorimetric detection were evaluated. The Fe3O4@SiNP-APTES-Au@Pd exhibited comparable activity to HRP. The Fe3O4@SiNP-APTES-Au@Pd was conjugated to protein-G-anti-IgG for the detection of anti-P53ab on a microplate and cellulose paper platforms. The LoD was 20.0 fg.ml-1 and 63.0 fg.ml-1 for the microplate and cellulose paper platform; respectively. The potential application of the designed immunobiosensor was evaluated in simulated serum samples. The developed sensors showed higher detection sensitivity, stability and had a lower detection limit for anti-P53ab when compared with the ELISA based detection. The results have provided alternative and effective quantification approaches to ELISA and a promising future for multiplexed detection of tumor-associated autoantibodies. The developed methodologies in this thesis could be applied for the detection of other autoantibodies in other cancer types and auto-immune diseases.
- Full Text:
- Date Issued: 2020
- Authors: Adeniyi, Omotayo Kayode
- Date: 2020
- Subjects: Lungs Cancer Early detection , Autoantibodies , Biosensors , Immunochemistry , Biochemical markers , p53 antioncogene
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/162988 , vital:41002 , 10.21504/10962/162988
- Description: Thesis (PhD)--Rhodes University, Science Faculty, Department of Chemistry, 2020. , Detection and profiling of circulating tumor-associated autoantibodies (TAAbs) are useful for screening and early-stage diagnosis of asymptomatic lung cancer. Immunobiosensor technologies aimed to accomplish the highly sensitive, rapid and low-cost detection of TAAbs can improve the early-stage detection of lung cancer. Immunobiosensors for the detection of anti-P53-tumour associated autoantibodies have been developed in this work. The design of sensing interfaces with immobilized P53 protein (P53ag) as a sensing element layer on a solid interface was investigated. Several methods of detecting anti-P53-antibodies (anti-P53ab) were investigated. These methods are label-free detection using electrochemical impedance spectroscopy (EIS) and two label techniques. The label-free electrochemical techniques utilize gold electrode pre-modified with a conducting layer of electrochemically grafted phenylethylamine for covalent immobilization of P53ag. The limit of anti-P53ab detection with the label-free EIS was 103.0 pg.ml-1. The labeled technique developed utilizes fluorescent, and peroxidase-like nanomaterial labeled antibody as a detection probe. For the fluorescence detection, fluorescent silica nanoparticles were synthesized by overloading FITC into the silica matrix and conjugated to detection antibody (anti-IgG). The detection of the anti-P53ab was based on the dissolution of the silica nanoparticles to release the loaded dye as a signal amplification strategy. The fluorescence detection was carried out on a microplate, and magnetic bead modified P53-antigen platforms and limit of detection (LoD) were 42.0 fg.ml-1 and 3.3 fg.ml-1 for anti-P53ab; respectively. Fe3O4@SiNP-APTES-Au@Pd hybrid nanoparticles were synthesized, and their peroxidase-like activity and colorimetric detection were evaluated. The Fe3O4@SiNP-APTES-Au@Pd exhibited comparable activity to HRP. The Fe3O4@SiNP-APTES-Au@Pd was conjugated to protein-G-anti-IgG for the detection of anti-P53ab on a microplate and cellulose paper platforms. The LoD was 20.0 fg.ml-1 and 63.0 fg.ml-1 for the microplate and cellulose paper platform; respectively. The potential application of the designed immunobiosensor was evaluated in simulated serum samples. The developed sensors showed higher detection sensitivity, stability and had a lower detection limit for anti-P53ab when compared with the ELISA based detection. The results have provided alternative and effective quantification approaches to ELISA and a promising future for multiplexed detection of tumor-associated autoantibodies. The developed methodologies in this thesis could be applied for the detection of other autoantibodies in other cancer types and auto-immune diseases.
- Full Text:
- Date Issued: 2020
Agro-morphological characterisation, nitrogen use efficiency and combining ability of quality protein maize (zea mays l.) genotypes for low nitrogen tolerance
- AdeOluwa, Olusola Oluyinka https://orcid.org/ 0000-0003-2145-7141
- Authors: AdeOluwa, Olusola Oluyinka https://orcid.org/ 0000-0003-2145-7141
- Date: 2021-08
- Subjects: Corn -- Quality
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/21501 , vital:48855 , http://id.loc.gov/authorities/subjects/sh85032715
- Description: Low nitrogen stress tolerant Quality Protein Maize (QPM) genotypes will be of great benefit to farmers for increasing productivity in nitrogen depleted soils in the Eastern Cape (EC) Province, South Africa (SA). The current study evaluated: (i) QPM inbred lines for tolerance to low soil nitrogen, (ii) the Nitrogen Use Efficiency (NUE) of different QPM inbred lines, (iii) the combining ability of QPM genotypes for tolerance to low nitrogen, grain yield, and other agro-morphological traits, and (iv) the agro-morphological characteristics and adaptation of QPM hybrids to environments of different production potential in the Eastern Cape, South Africa. Thirty-two white-seeded QPM inbred lines obtained from CIMMYT-Zimbabwe and Quality Seeds (PTY) LTD were evaluated for tolerance to low soil nitrogen stress using two nitrogen (N) treatment levels: 0 kg N ha-1 and 30 kg N ha-1 under both glasshouse and field conditions at the Crop Research farm, University of Fort Hare, in two planting seasons. The study aimed at assessing the response of QPM inbred lines to low N, with a view to identifying low N tolerant types under both glasshouse and field conditions. Shoot length stress tolerance index (SHL STI) indicated lines L23, L29, L27, L13, L16, L17, L31, L14, L18 and L22 to be low soil N tolerant from the glasshouse study. From the field study, low N Stress Tolerance Index (STI) identified inbred lines L23, L31, L26, L28, L25, L29, L32, L4, L6, L3 and L2 as low soil N tolerant. These inbred lines also had high grain yields (GY) in the field under 0 kg N ha-1 (all ranked within the top ten except L2). They also had the potential for stable yields across environments considering their high Yield Stability Index (YSI), Mean Productivity (MP), Geometric Mean Productivity (GMP) and Stress Susceptibility Index (SSI) values. Both the glasshouse and field studies revealed inbred lines L22, L23, L26, L28, L25, L29 and L31 were common to both the glasshouse and field studies as being low soil N tolerant. These thirty-two parental QPM inbred lines were evaluated in the field for their nitrogen use efficiency (NUE) under five different nitrogen levels: 0, 30, 60, 90 and 120 kg N ha-1. The inbred lines studied under 0 kg N ha-1 and 30 kg N ha-1 indicated that N level expressed highly significant differences (P ≤ 0.001) for total nitrogen in biomass (Bio Total N), total nitrogen in grain (G Total N), grain yield (GY), nitrogen use efficiency (NUE) and almost all the indices estimated. The top six nutrient use efficient genotypes were L9, L14, L23, L25, L29 and L32 across N levels. However, the best and highest NUE was obtained from the lowest fertilizer dose, 30 kg N ha-1. Highly significant and positive correlation coefficients were found between Nitrogen Use Efficiency (NUE) and yield (+0.9), NUE and NUtE (+0.9), NUE and HI (Harvest Index) (+0.5), NUtE and yield (+0.99), HI and yield (+0.5) and NUtE and HI (+0.5). Thus, NUE, HI and NUtE could be good predictors of yield potential under low N soil conditions. Sixty-four testcross hybrids were generated from crossing these 32 QPM inbred lines with two QPM open pollinated varieties (OPVs) as testers in a line x tester design and were evaluated under 0 kg N ha-1 and 30 kg N ha-1 in the field. The objectives of the experiment were to: (i) identify high yielding hybrids with tolerance to low soil N in the EC; (ii) determine the combining abilities and mode of gene action for various traits under low and high nitrogen conditions; and (iii) group the inbred lines into heterotic groups for future use in the breeding program. Results revealed that under 30 kg N ha-1 (30N) condition, both additive and non-additive gene effects were observed with less importance of non-additive gene action for grain yield. Based on specific combining ability (SCA) effects, hybrids LNC22, LNC31, LOB22, LNC30, LNC29, LOB11, LNC18, LOB30, LOB19 and LNC24 showed outstanding performance under 0 kg N ha-1 (0N) condition with relatively acceptable SCA under 30N for yield. Inbred lines L6 (1.63), L22 (1.74), L29 (1.83) and L30 (1.24) showed positive and significant GCAs for grain yield under 0N. They were identified as the best combiners for grain yield as they were among the top ten performers for GCA under 0N. They can be very useful sources of low N tolerance genes. Two heterotic groups were formed under 0 kg N ha-1 and 30 kg N ha-1 conditions, and they will be useful for future hybrid development in the breeding program. Furthermore, these thirty-two QPM inbred lines were utilised as parental lines to generate seventy-six single cross hybrids. These single cross hybrids were evaluated across three environments of varying production potential in the Eastern Cape (EC), during the 2016/17 and 2017/18 summer seasons. Non-QPM hybrids namely PAN5Q649R and Phb31MO7BR, as well as QPM OPVs OBATANPA and Nelson's Choice were included in these preliminary variety trials (PVTs) as checks. Twenty-five hybrids expressing high values for the Smith – Hazel selection index were identified across sites over years. Among those hybrids were two checks, namely Q16 (PAN5Q649R) and Q33 (Phb31MO7BR). The top five high – yielding hybrids selected based on the selection index were considered to be the most productive, stable and adaptable based on the GGE biplot and AMMI stability values. None of these single cross hybrids over yielded the best hybrid check (Q16) in the current study. A high potential environment, Centane, was the ideal environments for evaluating genotypes in the present study. The studies showed inbred lines L22, L23, L26, L28, L25, L29 and L31 to be low N stress tolerant at 0 kg N ha-1 based on the low N stress tolerance indices under glasshouse and the field conditions; they were also among the top ten grain-yielders under field conditions at 0 kg N ha-1. Also, in the NUE study, they were found to be among the top ten most N-efficient inbred lines under low N soils, under 30 kg N ha-1, and were among the top twenty-four inbred lines with high NUE values across the N levels in the study. Inbred lines L29 and L22 also produced testcross hybrids that were among the top twenty based on GY under 0 kg N ha-1. The testcross hybrids produced from these inbred lines were also among the top twenty-five with outstanding SCA effects for GY. These inbred lines were also parental lines of some of the top twenty- five best hybrids selected based on the Smith – Hazel selection index in the PVT study. Inbred lines L22, L23, L26, L28, L25, L29 and L31 can therefore further be evaluated and used as sources of N-tolerance genes in QPM breeding programs. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
- Full Text:
- Date Issued: 2021-08
- Authors: AdeOluwa, Olusola Oluyinka https://orcid.org/ 0000-0003-2145-7141
- Date: 2021-08
- Subjects: Corn -- Quality
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/21501 , vital:48855 , http://id.loc.gov/authorities/subjects/sh85032715
- Description: Low nitrogen stress tolerant Quality Protein Maize (QPM) genotypes will be of great benefit to farmers for increasing productivity in nitrogen depleted soils in the Eastern Cape (EC) Province, South Africa (SA). The current study evaluated: (i) QPM inbred lines for tolerance to low soil nitrogen, (ii) the Nitrogen Use Efficiency (NUE) of different QPM inbred lines, (iii) the combining ability of QPM genotypes for tolerance to low nitrogen, grain yield, and other agro-morphological traits, and (iv) the agro-morphological characteristics and adaptation of QPM hybrids to environments of different production potential in the Eastern Cape, South Africa. Thirty-two white-seeded QPM inbred lines obtained from CIMMYT-Zimbabwe and Quality Seeds (PTY) LTD were evaluated for tolerance to low soil nitrogen stress using two nitrogen (N) treatment levels: 0 kg N ha-1 and 30 kg N ha-1 under both glasshouse and field conditions at the Crop Research farm, University of Fort Hare, in two planting seasons. The study aimed at assessing the response of QPM inbred lines to low N, with a view to identifying low N tolerant types under both glasshouse and field conditions. Shoot length stress tolerance index (SHL STI) indicated lines L23, L29, L27, L13, L16, L17, L31, L14, L18 and L22 to be low soil N tolerant from the glasshouse study. From the field study, low N Stress Tolerance Index (STI) identified inbred lines L23, L31, L26, L28, L25, L29, L32, L4, L6, L3 and L2 as low soil N tolerant. These inbred lines also had high grain yields (GY) in the field under 0 kg N ha-1 (all ranked within the top ten except L2). They also had the potential for stable yields across environments considering their high Yield Stability Index (YSI), Mean Productivity (MP), Geometric Mean Productivity (GMP) and Stress Susceptibility Index (SSI) values. Both the glasshouse and field studies revealed inbred lines L22, L23, L26, L28, L25, L29 and L31 were common to both the glasshouse and field studies as being low soil N tolerant. These thirty-two parental QPM inbred lines were evaluated in the field for their nitrogen use efficiency (NUE) under five different nitrogen levels: 0, 30, 60, 90 and 120 kg N ha-1. The inbred lines studied under 0 kg N ha-1 and 30 kg N ha-1 indicated that N level expressed highly significant differences (P ≤ 0.001) for total nitrogen in biomass (Bio Total N), total nitrogen in grain (G Total N), grain yield (GY), nitrogen use efficiency (NUE) and almost all the indices estimated. The top six nutrient use efficient genotypes were L9, L14, L23, L25, L29 and L32 across N levels. However, the best and highest NUE was obtained from the lowest fertilizer dose, 30 kg N ha-1. Highly significant and positive correlation coefficients were found between Nitrogen Use Efficiency (NUE) and yield (+0.9), NUE and NUtE (+0.9), NUE and HI (Harvest Index) (+0.5), NUtE and yield (+0.99), HI and yield (+0.5) and NUtE and HI (+0.5). Thus, NUE, HI and NUtE could be good predictors of yield potential under low N soil conditions. Sixty-four testcross hybrids were generated from crossing these 32 QPM inbred lines with two QPM open pollinated varieties (OPVs) as testers in a line x tester design and were evaluated under 0 kg N ha-1 and 30 kg N ha-1 in the field. The objectives of the experiment were to: (i) identify high yielding hybrids with tolerance to low soil N in the EC; (ii) determine the combining abilities and mode of gene action for various traits under low and high nitrogen conditions; and (iii) group the inbred lines into heterotic groups for future use in the breeding program. Results revealed that under 30 kg N ha-1 (30N) condition, both additive and non-additive gene effects were observed with less importance of non-additive gene action for grain yield. Based on specific combining ability (SCA) effects, hybrids LNC22, LNC31, LOB22, LNC30, LNC29, LOB11, LNC18, LOB30, LOB19 and LNC24 showed outstanding performance under 0 kg N ha-1 (0N) condition with relatively acceptable SCA under 30N for yield. Inbred lines L6 (1.63), L22 (1.74), L29 (1.83) and L30 (1.24) showed positive and significant GCAs for grain yield under 0N. They were identified as the best combiners for grain yield as they were among the top ten performers for GCA under 0N. They can be very useful sources of low N tolerance genes. Two heterotic groups were formed under 0 kg N ha-1 and 30 kg N ha-1 conditions, and they will be useful for future hybrid development in the breeding program. Furthermore, these thirty-two QPM inbred lines were utilised as parental lines to generate seventy-six single cross hybrids. These single cross hybrids were evaluated across three environments of varying production potential in the Eastern Cape (EC), during the 2016/17 and 2017/18 summer seasons. Non-QPM hybrids namely PAN5Q649R and Phb31MO7BR, as well as QPM OPVs OBATANPA and Nelson's Choice were included in these preliminary variety trials (PVTs) as checks. Twenty-five hybrids expressing high values for the Smith – Hazel selection index were identified across sites over years. Among those hybrids were two checks, namely Q16 (PAN5Q649R) and Q33 (Phb31MO7BR). The top five high – yielding hybrids selected based on the selection index were considered to be the most productive, stable and adaptable based on the GGE biplot and AMMI stability values. None of these single cross hybrids over yielded the best hybrid check (Q16) in the current study. A high potential environment, Centane, was the ideal environments for evaluating genotypes in the present study. The studies showed inbred lines L22, L23, L26, L28, L25, L29 and L31 to be low N stress tolerant at 0 kg N ha-1 based on the low N stress tolerance indices under glasshouse and the field conditions; they were also among the top ten grain-yielders under field conditions at 0 kg N ha-1. Also, in the NUE study, they were found to be among the top ten most N-efficient inbred lines under low N soils, under 30 kg N ha-1, and were among the top twenty-four inbred lines with high NUE values across the N levels in the study. Inbred lines L29 and L22 also produced testcross hybrids that were among the top twenty based on GY under 0 kg N ha-1. The testcross hybrids produced from these inbred lines were also among the top twenty-five with outstanding SCA effects for GY. These inbred lines were also parental lines of some of the top twenty- five best hybrids selected based on the Smith – Hazel selection index in the PVT study. Inbred lines L22, L23, L26, L28, L25, L29 and L31 can therefore further be evaluated and used as sources of N-tolerance genes in QPM breeding programs. , Thesis (PhD) -- Faculty of Science and Agriculture, 2021
- Full Text:
- Date Issued: 2021-08
Bioprospecting for amylases, cellulases and xylanases from ericoid associated fungi, their production and characterisation for the bio-economy
- Authors: Adeoyo, Olusegun Richard
- Date: 2018
- Subjects: Mycorrhizal fungi , Hydrolases , Ericaceae South Africa , Ericaceae Molecular aspects
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/64327 , vital:28533
- Description: South Africa is one of the most productive areas for ericaceous plants with about 850 identified species in the Cape Floral Region. The Albany Centre of Endemism where all fungi used in this study were isolated from, falls within this region. Ericaceous plants interact with some fungi via an association called the ericoid mycorrhizal (ERM) association. All fungi used in this study were isolated from roots of six ericaceous plants; Erica cerinthoides, Erica demissa, Erica chamissonis, Erica glumiflora, Erica caffra and Erica nemorosa. Fungal enzymes are known to play a significant role in the food, brewing, detergent, pharmaceutical and biofuel industries. The enzyme industry is among the major sectors of the world, and additional novel sources are being explored from time to time. This study focussed on amylases (amyloglucosidase, AMG), cellulases (endoglucanase) and xylanases (endo-1,4-P-xylanase) production from ERM fungal isolates. Out of the fifty-one (51), fungal isolates screened, ChemRU330 (Leohumicola sp.), EdRU083 and EdRU002 were among the fungi that had the highest activities of all the enzymes. They were tested for the ability to produce amylases and cellulases under different pH and nutritional conditions that included: carbon sources, nitrogen sources and metal ions, at an optimum temperature of 28°C in a modified Melin-Norkrans (MMN) liquid medium. Cellulase specific activity of 3.99, 2.18 and 4.31 (U/mg protein) for isolates EdRU083, EdRU002 and ChemRU330, respectively, was produced at an optimal pH of 5.0. For amylase, ChemRU330 had the highest specific activity of 1.11 U/mg protein while EdRU083 and EdRU02 had a specific activity of 0.80 and 0.92 U/mg protein, respectively, at the same pH with corresponding biomass yield of 113, 125 and 97 mg/50 ml, respectively. Increased enzyme activities and improved mycelial biomass production were obtained in the presence of supplements such as potassium, sodium, glucose, maltose, cellobiose, tryptone and peptone, while NaFe-EDTA and cobalt inhibited enzyme activity. ChemRU330 was selected to determine the consistency and amount of amylase, cellulase and xylanase formed after several in vitro subculturing events. AMG and endo-1,4-P-xylanase were found to have the most consistent production throughout the study period. The AMG was stable at 45oC (pH 5.0), retaining approximately 65% activity over a period of 24 h. The molecular mass of AMG and endo-1,4-P-xylanase were estimated to be 101 kDa and 72 kDa, respectively. The Km and kcat were 0.38 mg/ml and 70 s-1, respectively, using soluble starch (AMG). For endo-1,4-P-xylanase, the Km and Vmax were 0.93 mg/ml and 8.54 U/ml, respectively, using beechwood xylan (endo-1,4-P-xylanase) as substrate. Additionally, crude extracts of five root endophytes with unique morphological characteristics were screened for antibacterial properties and was followed by determination of minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). L. incrustata (ChemRU330) and Chaetomium sp. extracts exhibited varying degrees of inhibition against two Gram-positive and Gram-negative bacteria. The crude extract of L. incrustata was the most effective which was found to inhibit Staphylococcus aureus (MIC: 1 mg/ml), Bacillus subtilis (MIC: 2 mg/ml) and Proteus vulgaris (MIC: 16 mg/ml). The L. incrustata displayed potential for antibacterial production and could be considered as an additional source of new antimicrobial agents in drug and food preservation. Also, the three isolates used for enzyme production were identified to genus and species levels, i.e., Leohumicola incrustata (ChemRU330), Leohumicola sp. (EdRU083) and Oidiodendron sp. (EdRU002) using both ITS and Cox1 DNA regions. The molecular analysis results indicated that these ERM mycorrhizal fungi were similar to those successfully described by some researchers in South Africa and Australia. Therefore, this study opens new opportunities for exploring ERM fungal biomolecules for the bio-economy. The promising physicochemical properties, starch and xylan hydrolysis end- products, and being non-pathogenic make AMG and endo-1,4-P-xylanase potential candidates for future applications as additives in the food industry for the production of glucose, glucose syrups, high-fructose corn syrups, and as well as the production of bioethanol. Finally, the findings of this study revealed that it is possible to produce hydrolytic enzymes from ERM fungi in vitro using chemically defined media. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2018
- Full Text:
- Date Issued: 2018
- Authors: Adeoyo, Olusegun Richard
- Date: 2018
- Subjects: Mycorrhizal fungi , Hydrolases , Ericaceae South Africa , Ericaceae Molecular aspects
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/64327 , vital:28533
- Description: South Africa is one of the most productive areas for ericaceous plants with about 850 identified species in the Cape Floral Region. The Albany Centre of Endemism where all fungi used in this study were isolated from, falls within this region. Ericaceous plants interact with some fungi via an association called the ericoid mycorrhizal (ERM) association. All fungi used in this study were isolated from roots of six ericaceous plants; Erica cerinthoides, Erica demissa, Erica chamissonis, Erica glumiflora, Erica caffra and Erica nemorosa. Fungal enzymes are known to play a significant role in the food, brewing, detergent, pharmaceutical and biofuel industries. The enzyme industry is among the major sectors of the world, and additional novel sources are being explored from time to time. This study focussed on amylases (amyloglucosidase, AMG), cellulases (endoglucanase) and xylanases (endo-1,4-P-xylanase) production from ERM fungal isolates. Out of the fifty-one (51), fungal isolates screened, ChemRU330 (Leohumicola sp.), EdRU083 and EdRU002 were among the fungi that had the highest activities of all the enzymes. They were tested for the ability to produce amylases and cellulases under different pH and nutritional conditions that included: carbon sources, nitrogen sources and metal ions, at an optimum temperature of 28°C in a modified Melin-Norkrans (MMN) liquid medium. Cellulase specific activity of 3.99, 2.18 and 4.31 (U/mg protein) for isolates EdRU083, EdRU002 and ChemRU330, respectively, was produced at an optimal pH of 5.0. For amylase, ChemRU330 had the highest specific activity of 1.11 U/mg protein while EdRU083 and EdRU02 had a specific activity of 0.80 and 0.92 U/mg protein, respectively, at the same pH with corresponding biomass yield of 113, 125 and 97 mg/50 ml, respectively. Increased enzyme activities and improved mycelial biomass production were obtained in the presence of supplements such as potassium, sodium, glucose, maltose, cellobiose, tryptone and peptone, while NaFe-EDTA and cobalt inhibited enzyme activity. ChemRU330 was selected to determine the consistency and amount of amylase, cellulase and xylanase formed after several in vitro subculturing events. AMG and endo-1,4-P-xylanase were found to have the most consistent production throughout the study period. The AMG was stable at 45oC (pH 5.0), retaining approximately 65% activity over a period of 24 h. The molecular mass of AMG and endo-1,4-P-xylanase were estimated to be 101 kDa and 72 kDa, respectively. The Km and kcat were 0.38 mg/ml and 70 s-1, respectively, using soluble starch (AMG). For endo-1,4-P-xylanase, the Km and Vmax were 0.93 mg/ml and 8.54 U/ml, respectively, using beechwood xylan (endo-1,4-P-xylanase) as substrate. Additionally, crude extracts of five root endophytes with unique morphological characteristics were screened for antibacterial properties and was followed by determination of minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). L. incrustata (ChemRU330) and Chaetomium sp. extracts exhibited varying degrees of inhibition against two Gram-positive and Gram-negative bacteria. The crude extract of L. incrustata was the most effective which was found to inhibit Staphylococcus aureus (MIC: 1 mg/ml), Bacillus subtilis (MIC: 2 mg/ml) and Proteus vulgaris (MIC: 16 mg/ml). The L. incrustata displayed potential for antibacterial production and could be considered as an additional source of new antimicrobial agents in drug and food preservation. Also, the three isolates used for enzyme production were identified to genus and species levels, i.e., Leohumicola incrustata (ChemRU330), Leohumicola sp. (EdRU083) and Oidiodendron sp. (EdRU002) using both ITS and Cox1 DNA regions. The molecular analysis results indicated that these ERM mycorrhizal fungi were similar to those successfully described by some researchers in South Africa and Australia. Therefore, this study opens new opportunities for exploring ERM fungal biomolecules for the bio-economy. The promising physicochemical properties, starch and xylan hydrolysis end- products, and being non-pathogenic make AMG and endo-1,4-P-xylanase potential candidates for future applications as additives in the food industry for the production of glucose, glucose syrups, high-fructose corn syrups, and as well as the production of bioethanol. Finally, the findings of this study revealed that it is possible to produce hydrolytic enzymes from ERM fungi in vitro using chemically defined media. , Thesis (PhD) -- Faculty of Science, Biochemistry and Microbiology, 2018
- Full Text:
- Date Issued: 2018
Design of immunosensor for the detection of C-reactive protein using oriented antibody immobilization
- Authors: Adesina, Abiola Olanike
- Date: 2020
- Subjects: Immunochemistry , Biosensors , C-reactive protein , Immunoassay , Cardiovascular system Diseases
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/163080 , vital:41010 , https://dx.doi.org/10.21504/10962/163080
- Description: Early diagnosis of cardiovascular diseases (CVDs) has been a major challenge since CVDs are clinically silent. The current methods available for the diagnosis are not sensitive enough at the onset of the disease. Also, the use of sophisticated equipments and experts in the result interpretation has created a lot of barriers to the early diagnosis of CVDs. Biomarkers detection using electrochemical immunoassay offers great advantages in terms of sensitivity, miniaturization and low cost. This can be integrated into portable devices which can be made available in the remote areas for easy assessment of health care services. The fabrication of piezoelectric and electrochemical immunosensors for the detection of C-reactive protein (a cardiac biomarker) are presented in this thesis. The electrochemical immunosensor investigates the effect of linkers chain length on the analytical performance of the immunosensor. The fabricated immunosensors were based on two simple and sensitive label-free impedimetric assay. Oriented immobilization of anti-CRP monoclonal antibody (mAb) unto gold surface was achieved using carbohydrate specific boronic ester reaction for enhanced capture and specific detection of CRP protein. Quartz crystal microbalance with dissipation (QCM-D) was employed to establish the immunocomplex formation between the mAb and CRP antigen. This was achieved by forming a self-assembled monolayer (SAM) of 4-mercaptophenylboronic acid (MPBA) onto the quartz crystal surface. The limit of detection (LoD) for the direct and sandwich immunoassay was 5.45 and 3.65 ng mL-1, respectively. The Au-MPBA-mAb/glucose immunosensor with the shortest chain length of boronic acid was fabricated. The use of SAM of 4-mercaptophenylboronic acid (MPBA) afforded a thio phenylboronic acid functionalized gold surface (Au-MPBA SAM). The anti-CRP-mAb capture antibody was immobilized in an oriented manner onto gold thiophenylboronic acid to yield an Au-MPBA-mAb surface. The non-specific boronic surface was blocked using glucose to yield an Au-MPBA-mAb/glucose. The modified gold surface could detect CRP antigen. The limit of detection (LoD) was found to be 9.82 and 6.23 ng mL-1 for the direct and sandwich immunoassay; respectively. The Au-MBA-APBA-mAb/glucose immunosensor was designed by forming a SAM of 4-mercaptobenzoic acid (MBA) onto gold electrode surface. The terminal -COOH group of the MBA SAM reacted with an amino (NH2) group the 4-aminophenylboronic acid (APBA) using EDC/NHS coupling. This was followed by the immobilization of the capture antibody and the blocking of non-specific binding sites using glucose. Improved analytical parameters were obtained with LoD for the direct and sandwich immunoassays found to be 2.90 and 1.20 ng mL-1; respectively. A more stable immunosensor utilizing electrochemical grafting was investigated for the fabrication of Au-PEA-SA-APBA-mAb/glucose. The enhanced stability of the immunosensor was through the electrochemical reduction of 4-aminoethyl benzene diazonium (AEBD) salt. The surface was further derivatized with succinic anhydride to have a carboxylic derivatized surface. Carbodiimide chemistry was used to form a covalent linkage between the APBA amine group and the surface -COOH terminal group to yield an Au-PEA-SA-APBA surface. The immobilization of mAb and glucose resulted in Au-PEA-SA-APBA-mAb/glucose immunosensor. For the detection and signal enhancement, the magnetic nanoparticles conjugated with anti-CRP polyclonal antibody (pAb) was prepared. The sandwich immunoassay was used to detect CRP by the first capture at Au-PEA-SA-APBA-mAb/glucose. This was followed by signal amplification using magnetic nanoparticles coated with a silica shell and conjugated to pAb (MNP-SiO-APTES-PBA-pAb/glucose). The limit of detection was found to be 560 pg mL-1 and much lower than sandwich immunosensor fabricated using SAMS. The signal enhancement, lower detection limits and high sensitivity were obtained due to the nanoparticles for the sandwich immunoassay. The linear range for all the fabricated immunosensor ranges from 10 – 100 ng mL-1. The sensitivity obtained for Au-MPBA-mAb/glucose, Au-MBA-APBA-mAb/glucose, and Au-PEA-SA-APBA-mAb/glucose were 0.691, 0.885, and 11.08 kΩ.ng-1.ml.cm-2 for the sandwich immunoassay. The piezoelectric immunosensor was regenerated using 0.1 M HCl without affecting the immobilized capture antibody. The real sample analysis was carried out in 10 % serum in a recovery study for all the fabricated immunosensor. The percentage of recovery was very close to 100 %. , Thesis (PhD)--Rhodes University, Science Faculty, Department of Chemistry, 2020.
- Full Text:
- Date Issued: 2020
- Authors: Adesina, Abiola Olanike
- Date: 2020
- Subjects: Immunochemistry , Biosensors , C-reactive protein , Immunoassay , Cardiovascular system Diseases
- Language: English
- Type: thesis , text , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/163080 , vital:41010 , https://dx.doi.org/10.21504/10962/163080
- Description: Early diagnosis of cardiovascular diseases (CVDs) has been a major challenge since CVDs are clinically silent. The current methods available for the diagnosis are not sensitive enough at the onset of the disease. Also, the use of sophisticated equipments and experts in the result interpretation has created a lot of barriers to the early diagnosis of CVDs. Biomarkers detection using electrochemical immunoassay offers great advantages in terms of sensitivity, miniaturization and low cost. This can be integrated into portable devices which can be made available in the remote areas for easy assessment of health care services. The fabrication of piezoelectric and electrochemical immunosensors for the detection of C-reactive protein (a cardiac biomarker) are presented in this thesis. The electrochemical immunosensor investigates the effect of linkers chain length on the analytical performance of the immunosensor. The fabricated immunosensors were based on two simple and sensitive label-free impedimetric assay. Oriented immobilization of anti-CRP monoclonal antibody (mAb) unto gold surface was achieved using carbohydrate specific boronic ester reaction for enhanced capture and specific detection of CRP protein. Quartz crystal microbalance with dissipation (QCM-D) was employed to establish the immunocomplex formation between the mAb and CRP antigen. This was achieved by forming a self-assembled monolayer (SAM) of 4-mercaptophenylboronic acid (MPBA) onto the quartz crystal surface. The limit of detection (LoD) for the direct and sandwich immunoassay was 5.45 and 3.65 ng mL-1, respectively. The Au-MPBA-mAb/glucose immunosensor with the shortest chain length of boronic acid was fabricated. The use of SAM of 4-mercaptophenylboronic acid (MPBA) afforded a thio phenylboronic acid functionalized gold surface (Au-MPBA SAM). The anti-CRP-mAb capture antibody was immobilized in an oriented manner onto gold thiophenylboronic acid to yield an Au-MPBA-mAb surface. The non-specific boronic surface was blocked using glucose to yield an Au-MPBA-mAb/glucose. The modified gold surface could detect CRP antigen. The limit of detection (LoD) was found to be 9.82 and 6.23 ng mL-1 for the direct and sandwich immunoassay; respectively. The Au-MBA-APBA-mAb/glucose immunosensor was designed by forming a SAM of 4-mercaptobenzoic acid (MBA) onto gold electrode surface. The terminal -COOH group of the MBA SAM reacted with an amino (NH2) group the 4-aminophenylboronic acid (APBA) using EDC/NHS coupling. This was followed by the immobilization of the capture antibody and the blocking of non-specific binding sites using glucose. Improved analytical parameters were obtained with LoD for the direct and sandwich immunoassays found to be 2.90 and 1.20 ng mL-1; respectively. A more stable immunosensor utilizing electrochemical grafting was investigated for the fabrication of Au-PEA-SA-APBA-mAb/glucose. The enhanced stability of the immunosensor was through the electrochemical reduction of 4-aminoethyl benzene diazonium (AEBD) salt. The surface was further derivatized with succinic anhydride to have a carboxylic derivatized surface. Carbodiimide chemistry was used to form a covalent linkage between the APBA amine group and the surface -COOH terminal group to yield an Au-PEA-SA-APBA surface. The immobilization of mAb and glucose resulted in Au-PEA-SA-APBA-mAb/glucose immunosensor. For the detection and signal enhancement, the magnetic nanoparticles conjugated with anti-CRP polyclonal antibody (pAb) was prepared. The sandwich immunoassay was used to detect CRP by the first capture at Au-PEA-SA-APBA-mAb/glucose. This was followed by signal amplification using magnetic nanoparticles coated with a silica shell and conjugated to pAb (MNP-SiO-APTES-PBA-pAb/glucose). The limit of detection was found to be 560 pg mL-1 and much lower than sandwich immunosensor fabricated using SAMS. The signal enhancement, lower detection limits and high sensitivity were obtained due to the nanoparticles for the sandwich immunoassay. The linear range for all the fabricated immunosensor ranges from 10 – 100 ng mL-1. The sensitivity obtained for Au-MPBA-mAb/glucose, Au-MBA-APBA-mAb/glucose, and Au-PEA-SA-APBA-mAb/glucose were 0.691, 0.885, and 11.08 kΩ.ng-1.ml.cm-2 for the sandwich immunoassay. The piezoelectric immunosensor was regenerated using 0.1 M HCl without affecting the immobilized capture antibody. The real sample analysis was carried out in 10 % serum in a recovery study for all the fabricated immunosensor. The percentage of recovery was very close to 100 %. , Thesis (PhD)--Rhodes University, Science Faculty, Department of Chemistry, 2020.
- Full Text:
- Date Issued: 2020
Evaluation of groundwater potential using geological and geophysical methods in the University of Fort Hare Alice Campus, Eastern Cape Province of South Africa
- Adesola, Gbenga Olamide https://orcid.org/0000-0002-4151-5305
- Authors: Adesola, Gbenga Olamide https://orcid.org/0000-0002-4151-5305
- Date: 2022-04
- Subjects: Groundwater , Geology, Structural -- South Africa , Geographical Information Systems
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/22490 , vital:52344
- Description: Geological and geophysical methods were used to evaluate the groundwater potential in University of Fort Hare (Alice campus), Eastern Cape Province of South Africa. Methodologies adopted for obtaining these results included a comprehensive literature review, thin section analysis, scanning electron microscopy, Geographical Information Systems (GIS), remote sensing and geophysical investigations (magnetic survey and vertical electrical sounding). The geology of the study area belongs to the Balfour Formation, which forms part of the Beaufort Group in the Karoo Supergroup. The rocks within the study area are composed majorly of sandstone and mudstone. Lineaments were automatically extracted using the PCI Geomatica 2018 software. Fifteen samples were collected at various locations within the study area and were analyzed using the petrographic microscope while others were analyzed with the Scanning Electron Microscopic (SEM) combined with an Energy dispersive x-ray spectrometry. The results show that the rocks are fractured, porous and contained minerals such as quartz, feldspar, calcite, mica and clay minerals. The occurrence of these fractures helps to improve the groundwater storage capacity in the study area. Out of the twenty seven (27) rock samples collected in the field, ten (10) rock samples were selected for densities (dry, wet and grain densities) and porosity measurements in the laboratory. The rocks density values range from 2.5763 – 2.6978 g/cm3. The average porosities of the rocks range from 0.85 – 2.56 percent. The density of the sandstone ranges from 2.5908 – 2.6820 g/cm3 whilst the porosity range from 0.85 – 2.02 percent. The density of the mudstone ranges from 2.5763 – 2.6978 g/cm3 whilst the porosity ranges from 1.84 – 2.56 percent. About 8458 magnetic measurements were taken at about 20 m spacing along linear and non-linear paths and road. A variety of magnetic maps were generated. Several magnetic highs were observed and the linear highs were interpreted to be due to dolerite dykes whilst the broader high zones were inferred to be due to dolerite sills. These Karoo dolerites intruded the sediments at various depths and must have fractured the sediments causing them to be more porous and permeable. The depth slices of magnetic data reveal that near surface magnetic bodies occur within the depth of approximately 19 m from the surface while deep seated ones occur as deep as 31 m and maybe deeper. The knowledge of the dolerite intrusions enabled the location of drilling targets for groundwater. Electrical resistivity data were collected at 28 sites using the Schlumberger array and a maximum cable length (250 m) from the centre point which achieved a maximum depth penetration of about 70 m to 162 m. The results from 1D modelling using WINRESIST software showed that the vertical electric sounding curves are composed of HA and HK curve-types, which show four geoelectric layers. The resistivity of the first layer which is the topmost layer has values ranging from 20 - 5752 Ωm and the thickness is between 0.4 – 1.8 m. The second layer which consists of clay, mudstone and sandstone has resistivity values varying from 3 - 51 Ωm and thickness varying from 0.8 – 17.5 m. The third layer which is interpreted to be the aquiferous layer of the study area is made up majorly of sandstone with resistivity that varies from 136 – 352 Ωm and thickness range from 9.9 – 143.9 m. The fourth layer of resistivity varying from 44 to 60428 Ωm is made up of mudstone and sandstone, which are in some places intruded by dolerites. Groundwater potential is favourably high in some of the areas investigated. Furthermore, the results of the research indicated that secondary porosity is the main porosity for the reservoir rocks in the study area. , Thesis (MSc) -- Faculty of Science and Agriculture, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Adesola, Gbenga Olamide https://orcid.org/0000-0002-4151-5305
- Date: 2022-04
- Subjects: Groundwater , Geology, Structural -- South Africa , Geographical Information Systems
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/22490 , vital:52344
- Description: Geological and geophysical methods were used to evaluate the groundwater potential in University of Fort Hare (Alice campus), Eastern Cape Province of South Africa. Methodologies adopted for obtaining these results included a comprehensive literature review, thin section analysis, scanning electron microscopy, Geographical Information Systems (GIS), remote sensing and geophysical investigations (magnetic survey and vertical electrical sounding). The geology of the study area belongs to the Balfour Formation, which forms part of the Beaufort Group in the Karoo Supergroup. The rocks within the study area are composed majorly of sandstone and mudstone. Lineaments were automatically extracted using the PCI Geomatica 2018 software. Fifteen samples were collected at various locations within the study area and were analyzed using the petrographic microscope while others were analyzed with the Scanning Electron Microscopic (SEM) combined with an Energy dispersive x-ray spectrometry. The results show that the rocks are fractured, porous and contained minerals such as quartz, feldspar, calcite, mica and clay minerals. The occurrence of these fractures helps to improve the groundwater storage capacity in the study area. Out of the twenty seven (27) rock samples collected in the field, ten (10) rock samples were selected for densities (dry, wet and grain densities) and porosity measurements in the laboratory. The rocks density values range from 2.5763 – 2.6978 g/cm3. The average porosities of the rocks range from 0.85 – 2.56 percent. The density of the sandstone ranges from 2.5908 – 2.6820 g/cm3 whilst the porosity range from 0.85 – 2.02 percent. The density of the mudstone ranges from 2.5763 – 2.6978 g/cm3 whilst the porosity ranges from 1.84 – 2.56 percent. About 8458 magnetic measurements were taken at about 20 m spacing along linear and non-linear paths and road. A variety of magnetic maps were generated. Several magnetic highs were observed and the linear highs were interpreted to be due to dolerite dykes whilst the broader high zones were inferred to be due to dolerite sills. These Karoo dolerites intruded the sediments at various depths and must have fractured the sediments causing them to be more porous and permeable. The depth slices of magnetic data reveal that near surface magnetic bodies occur within the depth of approximately 19 m from the surface while deep seated ones occur as deep as 31 m and maybe deeper. The knowledge of the dolerite intrusions enabled the location of drilling targets for groundwater. Electrical resistivity data were collected at 28 sites using the Schlumberger array and a maximum cable length (250 m) from the centre point which achieved a maximum depth penetration of about 70 m to 162 m. The results from 1D modelling using WINRESIST software showed that the vertical electric sounding curves are composed of HA and HK curve-types, which show four geoelectric layers. The resistivity of the first layer which is the topmost layer has values ranging from 20 - 5752 Ωm and the thickness is between 0.4 – 1.8 m. The second layer which consists of clay, mudstone and sandstone has resistivity values varying from 3 - 51 Ωm and thickness varying from 0.8 – 17.5 m. The third layer which is interpreted to be the aquiferous layer of the study area is made up majorly of sandstone with resistivity that varies from 136 – 352 Ωm and thickness range from 9.9 – 143.9 m. The fourth layer of resistivity varying from 44 to 60428 Ωm is made up of mudstone and sandstone, which are in some places intruded by dolerites. Groundwater potential is favourably high in some of the areas investigated. Furthermore, the results of the research indicated that secondary porosity is the main porosity for the reservoir rocks in the study area. , Thesis (MSc) -- Faculty of Science and Agriculture, 2022
- Full Text:
- Date Issued: 2022-04
Surveillance study on pathogenic Acinetobacter species in freshwater environment of the Amathole and Chris Hani District Municipalities, Eastern Cape, South Africa
- Authors: Adewoyin, Mary Ayobami
- Date: 2019-09
- Subjects: Acinetobacter infections , Acinetobacter , Nosocomial infections
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19836 , vital:43257
- Description: This study evaluates the occurrence of medically relevant Acinetobacter species in three rivers, namely; Keiskamma, Tyhume and Great Fish in the Eastern Cape Province, South Africa in one year sampling regime (April 2017 - March 2018). The physicochemical parameters (pH, temperature (TEM), electrical conductivity (EC), total dissolved solids (TDS), salinity (SAL), total suspended solids (TSS), turbidity (TBS), dissolved oxygen (DO) and biological oxygen demand (BOD)) of the water bodies were measured. The presumptive Acinetobacter species recovered from the freshwater resources were recorded and further confirmed using molecular techniques. Similarly, confirmed isolates were subjected to speciation using species-specific primer sets for A. baumannii and A. nosocomialis. Also, virulence genes namely; afa/draBC, epsA, fimH, OmpA, PAI, sfa/focDE, and traT in the two Acinetobacter species were also determined using molecular method. In addition, the antibiogram characteristics of A. baumannii and A. nosocomialis isolated from the water samples were determined using standard methods. The antibiotic susceptibility test was performed using a panel of 12 antibiotics belonging to the aminoglycosides (amikacin, AK and gentamicin, GM), β-lactam/β-lactamase-inhibitor combinations (piperacillin-tazobactam, PTZ), cephems (ceftazidime, CAZ, cefotaxime, CTX, and cefepime, CPM), carbapenems (imipenem, IMI and meropenem, MEM), fluoroquinolones (ciprofloxacin, CIP), folate pathway inhibitors (Trimethoprim/sulfamethoxazole, TS), lipopeptides (Polymyxin B, PB) and tetracyclines (tetracycline, TET). Similarly, antibiotic resistance genes (ARGs) present in the Acinetobacter isolates were investigated including aminoglycoside resistance genes (aacC2, aphA1 and aphA2), β-lactamases resistance genes (blaTEM, blaSHV, blaOXA-1-like, blaCTX-M(GROUP 1), blaCTX-M(GROUP 2), blaCTX-M(GROUP 9), blaVEB, blaGES, blaPER, blaCTX-M-8/-25, blaOXA-48-like, blaVIM, blaIMP and blaKPC), fluoroquinolones resistance genes (qnrA, qnrB, qnrC, qnrD and qnrS), sulfonamide resistance genes (sul1 and sul2), and tetracycline resistance genes (tetA, tetB, tetC, tetM, tetL and tetO). The pH, EC, TDS, SAL, TEMP, TSS, TBS, DO, and BOD for Tyhume River ranged as follows: 7.2-7.7, 125-141 μS/cm, 62-71mg/L, 0.06- 0.07 PSU, 11.3-20.2oC, 30.0-89.6 mg/L, 35.0-96.0 NTU, 8.2-9.8 mg/L, 2.0-4.2 mg/L, while for Great Fish River, the parameters were 8.0-8.2, 274-369 μS/cm, 137-184mg/L, 0.13-0.18PSU, 12.7-22.3oC, 44.3-99.4 mg/L, 48.0-214.0 NTU, 7.8-9.9 mg/L, 3.1- 4.9 mg/L, and at Keiskamma River they were 7.5-7.9, 153.2-285.0 μS/cm, 86-143 mg/L, 0.07-0.14 PSU, 11.0-21.4oC, 27.0- 55.6 mg/L, 31-61 NTU, 8.3-9.8 mg/L, 3.0-6.0 mg/L. A total of 1107 presumptive Acinetobacter spp. were recovered from the rivers sampled of which 428, 370 and 309 isolates were recovered from Tyhume, Great Fish and Keiskamma rivers respectively. However, only 844 was confirmed positive for the genus Acinetobacter and are recovered in the proportions 285 (77 percent), 219 (70.9 percent) and 340 (79 percent) from Great Fish, Keiskemma and Tyhume rivers respectively. Our finding revealed that 410 (48.58 percent) and 23 (2.7 percent) of the isolates were confirmed to be A. baumannii and A. nosocomalis respectively. Also, 308 (75.12 percent percent) A. baumannii and 3 (13.04 percent) A. nosocomialis isolates exhibited one or more virulence genes out of the seven tested, whereas 102 (24.88 percent) and 20 (86.95 percent) of the A. baumannii and A. nosocomialis isolates did not harbour any virulence gene. Additionally, OmpA was the most prevalent (p<0.05) virulence gene found in A. baumannii with 69 (45.10 percent), 52 (50.98 percent) and 77 (49.68 percent) isolates from Great Fish, Keiskamma and Tyhume rivers respectively. The rates of susceptibilities of A. baumannii and A. nosocomialis to the antibiotics followed the order; Piperacillin-tazobactam (72.8 percent ; 73.9 percent), Ceftazidime (70.5 percent ; 91.3 percent), Cefotaxime (16.8 percent ; 17.4 percent), Cefepime (88.5 percent ; 95.7 percent), Imipenem (95.9 percent ; 100 percent ), Meropenem (92.7 percent ; 91.3 percent), Amikacin (97.6 percent ; 91.3 percent), Gentamicin (89.8 percent ; 87 percent), Polymyxin B (84.4 percent ; 91.3 percent), Tetracycline (74.7 percent ; 78.3 percent), Ciprofloxacin (75.9 percent ; 78.3 percent) and Trimethoprim/sulfamethoxazole (74.0 percent ; 73.9 percent) respectively. Both A. baumannii and A. nosocomialis were highly susceptible to all the antimicrobials tested except cefotaxime where 64 percent and 78 percent intermediate responses were observed in the species. At least 10 isolates of A. baumannii were resistant against each of the antibiotics used. The modal multiple antibiotics resistance phenotypes (MARPs) for Acinetobacter spp. was MARP 3 (29.87 percent) and the least was MARP 10 and 11 (2.6 percent each). The antimicrobial resistance index (ARI) was higher at two sampling sites KE2 (0.33) and TY1 (0.22). Similarly, MARI showed that sampling sites KE2 was a hotspot for multidrug-resistant Acinetobacter spp. Of the five classes of ARGs studied, there was a widespread of β-lactamases (blaTEM) in the two Acinetobacter species, followed by sul2, which were detected in 67 (63.2 percent) and 44 (49.4 percent) isolates respectively, across the rivers studied. We conclude that aquatic resources of the study community are important reservoirs of pathogenic Acinetobacter species and antibiotic resistance determinants. The occurrence of clinically-important Acinetobacter species suggests possible contamination of these selected rivers which are consumed by humans and livestock, as well as being used for irrigation system, and this constitutes a risk to public health. It also shows that A. baumannii and A. nosocomialis can thrive in the aquatic environment. This study suggests that direct utilization of water from these sources for domestic and other purposes without any form of pre-treatment should be avoided. It is, therefore, necessary for regulatory authorities to monitor the release of domestic and industrial wastewater into these water bodies in order to prevent outbreaks of epidemics. , Thesis (PhD) (Microbiology) -- University of Fort Hare, 2019
- Full Text:
- Date Issued: 2019-09
- Authors: Adewoyin, Mary Ayobami
- Date: 2019-09
- Subjects: Acinetobacter infections , Acinetobacter , Nosocomial infections
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19836 , vital:43257
- Description: This study evaluates the occurrence of medically relevant Acinetobacter species in three rivers, namely; Keiskamma, Tyhume and Great Fish in the Eastern Cape Province, South Africa in one year sampling regime (April 2017 - March 2018). The physicochemical parameters (pH, temperature (TEM), electrical conductivity (EC), total dissolved solids (TDS), salinity (SAL), total suspended solids (TSS), turbidity (TBS), dissolved oxygen (DO) and biological oxygen demand (BOD)) of the water bodies were measured. The presumptive Acinetobacter species recovered from the freshwater resources were recorded and further confirmed using molecular techniques. Similarly, confirmed isolates were subjected to speciation using species-specific primer sets for A. baumannii and A. nosocomialis. Also, virulence genes namely; afa/draBC, epsA, fimH, OmpA, PAI, sfa/focDE, and traT in the two Acinetobacter species were also determined using molecular method. In addition, the antibiogram characteristics of A. baumannii and A. nosocomialis isolated from the water samples were determined using standard methods. The antibiotic susceptibility test was performed using a panel of 12 antibiotics belonging to the aminoglycosides (amikacin, AK and gentamicin, GM), β-lactam/β-lactamase-inhibitor combinations (piperacillin-tazobactam, PTZ), cephems (ceftazidime, CAZ, cefotaxime, CTX, and cefepime, CPM), carbapenems (imipenem, IMI and meropenem, MEM), fluoroquinolones (ciprofloxacin, CIP), folate pathway inhibitors (Trimethoprim/sulfamethoxazole, TS), lipopeptides (Polymyxin B, PB) and tetracyclines (tetracycline, TET). Similarly, antibiotic resistance genes (ARGs) present in the Acinetobacter isolates were investigated including aminoglycoside resistance genes (aacC2, aphA1 and aphA2), β-lactamases resistance genes (blaTEM, blaSHV, blaOXA-1-like, blaCTX-M(GROUP 1), blaCTX-M(GROUP 2), blaCTX-M(GROUP 9), blaVEB, blaGES, blaPER, blaCTX-M-8/-25, blaOXA-48-like, blaVIM, blaIMP and blaKPC), fluoroquinolones resistance genes (qnrA, qnrB, qnrC, qnrD and qnrS), sulfonamide resistance genes (sul1 and sul2), and tetracycline resistance genes (tetA, tetB, tetC, tetM, tetL and tetO). The pH, EC, TDS, SAL, TEMP, TSS, TBS, DO, and BOD for Tyhume River ranged as follows: 7.2-7.7, 125-141 μS/cm, 62-71mg/L, 0.06- 0.07 PSU, 11.3-20.2oC, 30.0-89.6 mg/L, 35.0-96.0 NTU, 8.2-9.8 mg/L, 2.0-4.2 mg/L, while for Great Fish River, the parameters were 8.0-8.2, 274-369 μS/cm, 137-184mg/L, 0.13-0.18PSU, 12.7-22.3oC, 44.3-99.4 mg/L, 48.0-214.0 NTU, 7.8-9.9 mg/L, 3.1- 4.9 mg/L, and at Keiskamma River they were 7.5-7.9, 153.2-285.0 μS/cm, 86-143 mg/L, 0.07-0.14 PSU, 11.0-21.4oC, 27.0- 55.6 mg/L, 31-61 NTU, 8.3-9.8 mg/L, 3.0-6.0 mg/L. A total of 1107 presumptive Acinetobacter spp. were recovered from the rivers sampled of which 428, 370 and 309 isolates were recovered from Tyhume, Great Fish and Keiskamma rivers respectively. However, only 844 was confirmed positive for the genus Acinetobacter and are recovered in the proportions 285 (77 percent), 219 (70.9 percent) and 340 (79 percent) from Great Fish, Keiskemma and Tyhume rivers respectively. Our finding revealed that 410 (48.58 percent) and 23 (2.7 percent) of the isolates were confirmed to be A. baumannii and A. nosocomalis respectively. Also, 308 (75.12 percent percent) A. baumannii and 3 (13.04 percent) A. nosocomialis isolates exhibited one or more virulence genes out of the seven tested, whereas 102 (24.88 percent) and 20 (86.95 percent) of the A. baumannii and A. nosocomialis isolates did not harbour any virulence gene. Additionally, OmpA was the most prevalent (p<0.05) virulence gene found in A. baumannii with 69 (45.10 percent), 52 (50.98 percent) and 77 (49.68 percent) isolates from Great Fish, Keiskamma and Tyhume rivers respectively. The rates of susceptibilities of A. baumannii and A. nosocomialis to the antibiotics followed the order; Piperacillin-tazobactam (72.8 percent ; 73.9 percent), Ceftazidime (70.5 percent ; 91.3 percent), Cefotaxime (16.8 percent ; 17.4 percent), Cefepime (88.5 percent ; 95.7 percent), Imipenem (95.9 percent ; 100 percent ), Meropenem (92.7 percent ; 91.3 percent), Amikacin (97.6 percent ; 91.3 percent), Gentamicin (89.8 percent ; 87 percent), Polymyxin B (84.4 percent ; 91.3 percent), Tetracycline (74.7 percent ; 78.3 percent), Ciprofloxacin (75.9 percent ; 78.3 percent) and Trimethoprim/sulfamethoxazole (74.0 percent ; 73.9 percent) respectively. Both A. baumannii and A. nosocomialis were highly susceptible to all the antimicrobials tested except cefotaxime where 64 percent and 78 percent intermediate responses were observed in the species. At least 10 isolates of A. baumannii were resistant against each of the antibiotics used. The modal multiple antibiotics resistance phenotypes (MARPs) for Acinetobacter spp. was MARP 3 (29.87 percent) and the least was MARP 10 and 11 (2.6 percent each). The antimicrobial resistance index (ARI) was higher at two sampling sites KE2 (0.33) and TY1 (0.22). Similarly, MARI showed that sampling sites KE2 was a hotspot for multidrug-resistant Acinetobacter spp. Of the five classes of ARGs studied, there was a widespread of β-lactamases (blaTEM) in the two Acinetobacter species, followed by sul2, which were detected in 67 (63.2 percent) and 44 (49.4 percent) isolates respectively, across the rivers studied. We conclude that aquatic resources of the study community are important reservoirs of pathogenic Acinetobacter species and antibiotic resistance determinants. The occurrence of clinically-important Acinetobacter species suggests possible contamination of these selected rivers which are consumed by humans and livestock, as well as being used for irrigation system, and this constitutes a risk to public health. It also shows that A. baumannii and A. nosocomialis can thrive in the aquatic environment. This study suggests that direct utilization of water from these sources for domestic and other purposes without any form of pre-treatment should be avoided. It is, therefore, necessary for regulatory authorities to monitor the release of domestic and industrial wastewater into these water bodies in order to prevent outbreaks of epidemics. , Thesis (PhD) (Microbiology) -- University of Fort Hare, 2019
- Full Text:
- Date Issued: 2019-09
A highly selective and sensitive pyridylazo-2-naphthol-poly (acrylic acid) functionalized electrospun nanofiber fluorescence “turn-off” chemosensory system for Ni 2+
- Adewuyi, Sheriff, Ondigo, Dezzline A, Zugle, Ruphino, Tshentu, Zenixole R, Nyokong, Tebello, Torto, Nelson
- Authors: Adewuyi, Sheriff , Ondigo, Dezzline A , Zugle, Ruphino , Tshentu, Zenixole R , Nyokong, Tebello , Torto, Nelson
- Date: 2012
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/246012 , vital:51428 , xlink:href="https://doi.org/10.1039/C2AY25182E"
- Description: A fluorescent nanofiber probe for the determination of Ni2+ was developed via the electrospinning of a covalently functionalized pyridylazo-2-naphthol-poly(acrylic acid) polymer. Fluorescent nanofibers with diameters in the range 230–800 nm were produced with uniformly dispersed fluorophores. The excitation and emission fluorescence were at wavelengths 479 and 557 nm respectively, thereby exhibiting a good Stokes' shift. This Ni2+ probe that employs fluorescence quenching in a solid receptor–fluorophore system exhibited a good correlation between the fluorescence intensity and nickel concentration up to 1.0 μg mL−1 based on the Stern–Volmer mechanism. The probe achieved a detection limit (3δ/S) of 0.07 ng mL−1 and a precision, calculated as a relative standard deviation (RSD) of more than 4% (n = 8). The concentration of Ni2+ in a certified reference material (SEP-3) was found to be 0.8986 μg mL−1, which is significantly comparable with the certified value of 0.8980 μg mL−1. The accuracy of the determinations, expressed as a relative error between the certified and the observed values of certified reference groundwater was ≤0.1%. The versatility of the nanofiber probe was demonstrated by affording simple, rapid and selective detection of Ni2+ in the presence of other competing metal ions by direct analysis, without employing any further sample handling steps.
- Full Text:
- Date Issued: 2012
- Authors: Adewuyi, Sheriff , Ondigo, Dezzline A , Zugle, Ruphino , Tshentu, Zenixole R , Nyokong, Tebello , Torto, Nelson
- Date: 2012
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/246012 , vital:51428 , xlink:href="https://doi.org/10.1039/C2AY25182E"
- Description: A fluorescent nanofiber probe for the determination of Ni2+ was developed via the electrospinning of a covalently functionalized pyridylazo-2-naphthol-poly(acrylic acid) polymer. Fluorescent nanofibers with diameters in the range 230–800 nm were produced with uniformly dispersed fluorophores. The excitation and emission fluorescence were at wavelengths 479 and 557 nm respectively, thereby exhibiting a good Stokes' shift. This Ni2+ probe that employs fluorescence quenching in a solid receptor–fluorophore system exhibited a good correlation between the fluorescence intensity and nickel concentration up to 1.0 μg mL−1 based on the Stern–Volmer mechanism. The probe achieved a detection limit (3δ/S) of 0.07 ng mL−1 and a precision, calculated as a relative standard deviation (RSD) of more than 4% (n = 8). The concentration of Ni2+ in a certified reference material (SEP-3) was found to be 0.8986 μg mL−1, which is significantly comparable with the certified value of 0.8980 μg mL−1. The accuracy of the determinations, expressed as a relative error between the certified and the observed values of certified reference groundwater was ≤0.1%. The versatility of the nanofiber probe was demonstrated by affording simple, rapid and selective detection of Ni2+ in the presence of other competing metal ions by direct analysis, without employing any further sample handling steps.
- Full Text:
- Date Issued: 2012
Synthesis and anti-parasitic activity of N-benzylated phosphoramidate Mg2+-chelating ligands
- Adeyemi, Christiana M, Hoppe, Heinrich C, Isaacs, Michelle, Mnkandhla, Dumisani, Lobb, Kevin A, Klein, Rosalyn, Kaye, Perry T
- Authors: Adeyemi, Christiana M , Hoppe, Heinrich C , Isaacs, Michelle , Mnkandhla, Dumisani , Lobb, Kevin A , Klein, Rosalyn , Kaye, Perry T
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/451171 , vital:75025 , xlink:href="https://doi.org/10.1016/j.bioorg.2020.104280"
- Description: A series of N-benzylated phosphoramidate esters, containing a 3,4-dihydroxyphenyl Mg2+-chelating group, has been synthesised in five steps as analogues of fosmidomycin, a Plasmodium falciparum 1-deoxy-1-D-xylulose-5- phosphate reductoisomerase (PfDXR) inhibitor. The 3,4-dihydroxyphenyl group effectively replaces the Mg2+- chelating hydroxamic acid group in fosmidomycin. The compounds showed very encouraging anti-parasitic activity with IC50 values of 5.6–16.4 µM against Plasmodium falciparum parasites and IC50 values of 5.2 – 10.2 µM against Trypanosoma brucei brucei (T.b.brucei). Data obtained from in silico docking of the ligands in the PfDXR receptor cavity (3AU9)5 support their potential as PfDXR inhibitors.
- Full Text:
- Date Issued: 2020
- Authors: Adeyemi, Christiana M , Hoppe, Heinrich C , Isaacs, Michelle , Mnkandhla, Dumisani , Lobb, Kevin A , Klein, Rosalyn , Kaye, Perry T
- Date: 2020
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/451171 , vital:75025 , xlink:href="https://doi.org/10.1016/j.bioorg.2020.104280"
- Description: A series of N-benzylated phosphoramidate esters, containing a 3,4-dihydroxyphenyl Mg2+-chelating group, has been synthesised in five steps as analogues of fosmidomycin, a Plasmodium falciparum 1-deoxy-1-D-xylulose-5- phosphate reductoisomerase (PfDXR) inhibitor. The 3,4-dihydroxyphenyl group effectively replaces the Mg2+- chelating hydroxamic acid group in fosmidomycin. The compounds showed very encouraging anti-parasitic activity with IC50 values of 5.6–16.4 µM against Plasmodium falciparum parasites and IC50 values of 5.2 – 10.2 µM against Trypanosoma brucei brucei (T.b.brucei). Data obtained from in silico docking of the ligands in the PfDXR receptor cavity (3AU9)5 support their potential as PfDXR inhibitors.
- Full Text:
- Date Issued: 2020
Synthesis of N-Substituted phosphoramidic acid esters as “reverse” fosmidomycin analogues
- Adeyemi, Christiana M, Hoppe, Heinrich C, Isaacs, Michelle, Klein, Rosalyn, Lobb, Kevin A, Kaye, Perry T
- Authors: Adeyemi, Christiana M , Hoppe, Heinrich C , Isaacs, Michelle , Klein, Rosalyn , Lobb, Kevin A , Kaye, Perry T
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/447196 , vital:74591 , xlink:href="https://doi.org/10.1016/j.tet.2019.02.003"
- Description: An efficient synthetic pathway to a series of novel “reverse” fosmidomycin analogues has been developed, commencing from substituted benzylamines. In these analogues, the fosmidomycin hydroxamate moiety is reversed and the tetrahedral methylene carbon adjacent to the phosphonate moiety is replaced by a nitrogen atom bearing different benzyl groups. The resulting phosphonate esters were designed as potential antimalarial “pro-drugs”.
- Full Text:
- Date Issued: 2019
- Authors: Adeyemi, Christiana M , Hoppe, Heinrich C , Isaacs, Michelle , Klein, Rosalyn , Lobb, Kevin A , Kaye, Perry T
- Date: 2019
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/447196 , vital:74591 , xlink:href="https://doi.org/10.1016/j.tet.2019.02.003"
- Description: An efficient synthetic pathway to a series of novel “reverse” fosmidomycin analogues has been developed, commencing from substituted benzylamines. In these analogues, the fosmidomycin hydroxamate moiety is reversed and the tetrahedral methylene carbon adjacent to the phosphonate moiety is replaced by a nitrogen atom bearing different benzyl groups. The resulting phosphonate esters were designed as potential antimalarial “pro-drugs”.
- Full Text:
- Date Issued: 2019
Synthesis and anti-parasitic activity of C-benzylated (N-arylcarbamoyl) alkylphosphonate esters
- Adeyemi, Christiana M, Isaacs, Michelle, Mnkandhla, Dumisani, Klein, Rosalyn, Hoppe, Heinrich C, Krause, Rui W M, Lobb, Kevin A, Kaye, Perry T
- Authors: Adeyemi, Christiana M , Isaacs, Michelle , Mnkandhla, Dumisani , Klein, Rosalyn , Hoppe, Heinrich C , Krause, Rui W M , Lobb, Kevin A , Kaye, Perry T
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/477661 , vital:78109 , xlink:href="https://doi.org/10.1016/j.tet.2017.01.045"
- Description: Unexpected substituent-dependent regioselectivty challenges in the synthesis of C-benzylated (N-arylcarbamoyl) phosphonate esters have been resolved. The C-benzylated N-furfurylcarbamoyl derivative showed low micromolar PfLDH inhibition, while one of the C-benzylated N-arylcarbamoyl analogues was active against Nagana Trypanosoma brucei parasites which are responsible for African trypanosomiasis in cattle.
- Full Text:
- Date Issued: 2017
- Authors: Adeyemi, Christiana M , Isaacs, Michelle , Mnkandhla, Dumisani , Klein, Rosalyn , Hoppe, Heinrich C , Krause, Rui W M , Lobb, Kevin A , Kaye, Perry T
- Date: 2017
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/477661 , vital:78109 , xlink:href="https://doi.org/10.1016/j.tet.2017.01.045"
- Description: Unexpected substituent-dependent regioselectivty challenges in the synthesis of C-benzylated (N-arylcarbamoyl) phosphonate esters have been resolved. The C-benzylated N-furfurylcarbamoyl derivative showed low micromolar PfLDH inhibition, while one of the C-benzylated N-arylcarbamoyl analogues was active against Nagana Trypanosoma brucei parasites which are responsible for African trypanosomiasis in cattle.
- Full Text:
- Date Issued: 2017
Synthesis and biolgical screening of potential plasmodium falciparum DXR inhibitors
- Authors: Adeyemi, Christiana Modupe
- Date: 2017-04
- Subjects: Plasmodium falciparum , Enzyme inhibitors , Malaria , Antimalarials , Drug development , Malaria -- Chemotherapy , Isopentenoids -- Synthesis , Fosmidomycin , 1-Deoxy-D-xylulose 5-phosphate
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/61790 , vital:28060
- Description: The non-mevalonate isoprenoid pathway, also known as the 1-deoxy-D-xylulose-5- phosphate DXP pathway, is absent in humans, but present in the anopheles mosquito responsible for the transmission of malaria. DXP reductoisomerase - a key enzyme in the DXP pathway in Plasmodium falciparum (PfDXR) has been identified as a target for the design of novel anti-malarial drugs. Fosmidomycin and its acetyl analogue (FR900098) are known to be inhibitors of PfDXR and, in this study, synthetic variations of the fosmidomycin scaffold have led to four series of novel analogues. Particular attention has been centred on the introduction of various substituted benzyl groups in each of these series in order to occupy a recently discovered vacant pocket in the PfDXR active-site and thus enhance ligand-enzyme binding. In the process 160 ligands and precursors have been prepared, no less than 119 of them novel. Fistly, a series of C-benzylated phosphonate esters and phosphonic acids were synthesised, in which the fosmidomycin hydroxamate Mg2+- coordinating moiety was replaced by an amide funtionality and the number of methylene groups in the “hydrophobic patch” between the phosphonate and the hydroxamate moiety was decreased from two to one. Several approaches were explored for this series, the most successful involving reaction of 3- substituted anilines with a-bromo propanoic acid in the presence of the coupling agent 1,1'- carbonyldiimidazole (CDI), followed by Michaelis-Arbuzov phosphonation using triethyl phosphite. Reaction of the resulting chiral phosphonate esters with bromotrimethylsilane gave the corresponding phosphonic acids in good yields. In order to obviate chirality issues, a second series of potential “reverse” fosmidomycin analogues was synthesised by replacing the methylene group adjacent to the the phosphonate moiety with a nitrogen atom. Deprotonation, alkylation and phosphorylation of various amines gave diethyl #-benzylphosphoramidate ester intermediate. Aza-Michael addition of these intermediates, followed by hydrolysis gave the corresponding carboxylic acids which could be reacted with different hydroxylamine hydrochloride derivatives to afford the novel hydroxamic acid derivatives in good yields. Thirdly, a series of a novel #-benzylated phosphoramidate derivatives were prepared as aza- FR900098 analogues. Alkylation of different amines using bromoacetalde-hyde diethylacetal gave a series of N-benzyl-2,2-diethoxyethylamine compounds, which were then elaborated via a futher six steps to afford novel #-benzylated phosphoramidate derivatives. Finally, in order to ensure syn-orientation of the donor atoms in the Mg - coordinating group and, at the same time, introduce conformational constraints in the ligand, the hydrophobic patch and the hydroxamate moiety were replaced by cyclic systems. Several approaches towards the synthesis of such conformationally constrained phosphoramidate analogues from maleic anhydride led to the unexpected isolation of an unprecedented acyclic furfuryl compound, and 1H NMR and DFT-level theoretical studies have been initiated to explore the reaction sequence. A series of #-benzylated phosphoramidate derivatives containing dihydroxy aromatic rings (as the conformationally constrained groups) to replace the hydroxamate moiety, were successfully obtained in six steps from the starting material, 3,4-dihydroxylbenzaldehyde. While in vitro assays have been conducted on all of the synthesised compounds, and some of the ligands show promising anti-malarial inhibitory activity - most especially the conformationally constrained cyclic #-benzylated phosphoramidate series. Interestingly, a number of these compounds has also shown activity against T.brucei - the causative agent of sleeping sickness. In silico docking studies of selected compounds has revealed the capacity of some of the ligands to bind effectively in the PfDXR active-site with the newly introduced benzyl group occupying the adjacent vacant pocket. The physico-chemical properties of these ligands were also explored in order to predict the oral-bioavailability. Most of the ligands obeyed the Lipinski rule of 5, while QSAR methods have been used in an attempt to correlate structural variations and calculated molecular properties with the bioassay data. , Thesis (PhD) -- Faculty of Science, Chemistry, 2017
- Full Text:
- Date Issued: 2017-04
- Authors: Adeyemi, Christiana Modupe
- Date: 2017-04
- Subjects: Plasmodium falciparum , Enzyme inhibitors , Malaria , Antimalarials , Drug development , Malaria -- Chemotherapy , Isopentenoids -- Synthesis , Fosmidomycin , 1-Deoxy-D-xylulose 5-phosphate
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10962/61790 , vital:28060
- Description: The non-mevalonate isoprenoid pathway, also known as the 1-deoxy-D-xylulose-5- phosphate DXP pathway, is absent in humans, but present in the anopheles mosquito responsible for the transmission of malaria. DXP reductoisomerase - a key enzyme in the DXP pathway in Plasmodium falciparum (PfDXR) has been identified as a target for the design of novel anti-malarial drugs. Fosmidomycin and its acetyl analogue (FR900098) are known to be inhibitors of PfDXR and, in this study, synthetic variations of the fosmidomycin scaffold have led to four series of novel analogues. Particular attention has been centred on the introduction of various substituted benzyl groups in each of these series in order to occupy a recently discovered vacant pocket in the PfDXR active-site and thus enhance ligand-enzyme binding. In the process 160 ligands and precursors have been prepared, no less than 119 of them novel. Fistly, a series of C-benzylated phosphonate esters and phosphonic acids were synthesised, in which the fosmidomycin hydroxamate Mg2+- coordinating moiety was replaced by an amide funtionality and the number of methylene groups in the “hydrophobic patch” between the phosphonate and the hydroxamate moiety was decreased from two to one. Several approaches were explored for this series, the most successful involving reaction of 3- substituted anilines with a-bromo propanoic acid in the presence of the coupling agent 1,1'- carbonyldiimidazole (CDI), followed by Michaelis-Arbuzov phosphonation using triethyl phosphite. Reaction of the resulting chiral phosphonate esters with bromotrimethylsilane gave the corresponding phosphonic acids in good yields. In order to obviate chirality issues, a second series of potential “reverse” fosmidomycin analogues was synthesised by replacing the methylene group adjacent to the the phosphonate moiety with a nitrogen atom. Deprotonation, alkylation and phosphorylation of various amines gave diethyl #-benzylphosphoramidate ester intermediate. Aza-Michael addition of these intermediates, followed by hydrolysis gave the corresponding carboxylic acids which could be reacted with different hydroxylamine hydrochloride derivatives to afford the novel hydroxamic acid derivatives in good yields. Thirdly, a series of a novel #-benzylated phosphoramidate derivatives were prepared as aza- FR900098 analogues. Alkylation of different amines using bromoacetalde-hyde diethylacetal gave a series of N-benzyl-2,2-diethoxyethylamine compounds, which were then elaborated via a futher six steps to afford novel #-benzylated phosphoramidate derivatives. Finally, in order to ensure syn-orientation of the donor atoms in the Mg - coordinating group and, at the same time, introduce conformational constraints in the ligand, the hydrophobic patch and the hydroxamate moiety were replaced by cyclic systems. Several approaches towards the synthesis of such conformationally constrained phosphoramidate analogues from maleic anhydride led to the unexpected isolation of an unprecedented acyclic furfuryl compound, and 1H NMR and DFT-level theoretical studies have been initiated to explore the reaction sequence. A series of #-benzylated phosphoramidate derivatives containing dihydroxy aromatic rings (as the conformationally constrained groups) to replace the hydroxamate moiety, were successfully obtained in six steps from the starting material, 3,4-dihydroxylbenzaldehyde. While in vitro assays have been conducted on all of the synthesised compounds, and some of the ligands show promising anti-malarial inhibitory activity - most especially the conformationally constrained cyclic #-benzylated phosphoramidate series. Interestingly, a number of these compounds has also shown activity against T.brucei - the causative agent of sleeping sickness. In silico docking studies of selected compounds has revealed the capacity of some of the ligands to bind effectively in the PfDXR active-site with the newly introduced benzyl group occupying the adjacent vacant pocket. The physico-chemical properties of these ligands were also explored in order to predict the oral-bioavailability. Most of the ligands obeyed the Lipinski rule of 5, while QSAR methods have been used in an attempt to correlate structural variations and calculated molecular properties with the bioassay data. , Thesis (PhD) -- Faculty of Science, Chemistry, 2017
- Full Text:
- Date Issued: 2017-04
Understanding foraging practices in Lagos metropolis to redesign urban greenspaces in support of human-nature interactions
- Adeyemi, Opeyemi, Shackleton, Charlie M
- Authors: Adeyemi, Opeyemi , Shackleton, Charlie M
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401353 , vital:69728 , xlink:href="https://doi.org/10.1016/j.ufug.2022.127805"
- Description: Enhancing knowledge of urban foraging across different urban landscapes is an urgent matter given that about two-thirds of the world’s population is projected to live in urban areas by 2050, whilst 50 % of Africa’s population is expected to live in cities by 2030. This study was conducted in Lagos metropolis which is the economic hub of Africa’s most populous country. Data was collected using an in-person, semi-structured questionnaire from 347 persons who were 18 years or older to identify foragers and non-foragers, their sociodemographic profiles, and their foraging practices. Results revealed that about two out of three persons sampled forage to some degree. The collection happened more in domestic gardens (34 %) and streets (27 %) than in other foraging sites (such as unused lands, institutional grounds and lakes and riparian fringes). A total of 35 species were reportedly foraged within the metropolis, mostly for food (71 %) and medicine (26 %). Mango (Mangifera indica), pawpaw (Carica papaya), tropical almond (Terminalia catappa), fish (various species), bitter leaf (Vernonia amygdalina) and spinach (Spinacia oleracea) were the most gathered species. The distance travelled to foraging wild species ranged from 5 m to 25 km. The primary motivation for foraging was the acquisition of fresh and natural materials. However, some felt that foraging was a stressful activity. The unavailability of foraging sites and species was the major constraint to foraging in this megacity. Hence, efforts to increase the edible components of public green spaces and to provide free access could potentially allow more people to forage and make current foraging more secure. We suggest that making provisions for foraging in urban planning goals could contribute to the sustainable development of cities in Africa and elsewhere.
- Full Text:
- Date Issued: 2023
- Authors: Adeyemi, Opeyemi , Shackleton, Charlie M
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/401353 , vital:69728 , xlink:href="https://doi.org/10.1016/j.ufug.2022.127805"
- Description: Enhancing knowledge of urban foraging across different urban landscapes is an urgent matter given that about two-thirds of the world’s population is projected to live in urban areas by 2050, whilst 50 % of Africa’s population is expected to live in cities by 2030. This study was conducted in Lagos metropolis which is the economic hub of Africa’s most populous country. Data was collected using an in-person, semi-structured questionnaire from 347 persons who were 18 years or older to identify foragers and non-foragers, their sociodemographic profiles, and their foraging practices. Results revealed that about two out of three persons sampled forage to some degree. The collection happened more in domestic gardens (34 %) and streets (27 %) than in other foraging sites (such as unused lands, institutional grounds and lakes and riparian fringes). A total of 35 species were reportedly foraged within the metropolis, mostly for food (71 %) and medicine (26 %). Mango (Mangifera indica), pawpaw (Carica papaya), tropical almond (Terminalia catappa), fish (various species), bitter leaf (Vernonia amygdalina) and spinach (Spinacia oleracea) were the most gathered species. The distance travelled to foraging wild species ranged from 5 m to 25 km. The primary motivation for foraging was the acquisition of fresh and natural materials. However, some felt that foraging was a stressful activity. The unavailability of foraging sites and species was the major constraint to foraging in this megacity. Hence, efforts to increase the edible components of public green spaces and to provide free access could potentially allow more people to forage and make current foraging more secure. We suggest that making provisions for foraging in urban planning goals could contribute to the sustainable development of cities in Africa and elsewhere.
- Full Text:
- Date Issued: 2023
Prevalence and molecular analysis of multidrug-resistant Acinetobacter baumannii in the extra-hospital environment in Mthatha, South Africa
- Adjei, Anane Yaw, Apalata, Teke, Vasaikar, Sandeep, Okuthe, Grace Emily, Songca, Sandile
- Authors: Adjei, Anane Yaw , Apalata, Teke , Vasaikar, Sandeep , Okuthe, Grace Emily , Songca, Sandile
- Date: 2019
- Subjects: Acinetobacter baumannii , Carbapenemase-encoding genes , Multidrug-resistance , ISAba1 , intI1
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/11260/2409 , vital:41457 , https://doi.org/10.1016/j.bjid.2019.09.004
- Description: The presence of Acinetobacter baumannii outside hospitals remains unclear. This study aimed to determine the prevalence of multidrug-resistance (MDR) A. baumannii in the extra-hospital environment in Mthatha, South Africa and to investigate the frequency of carbapenemase-encoding genes. Material and Methods: From August 2016 to July 2017 a total of 598 abattoir samples and 689 aquatic samples were collected and analyzed presumptively by cultural methods for the presence of A. baumannii using CHROMagarTM Acinetobacter medium. Species identification was performed by autoSCAN-4 (Dade Behring Inc., IL) and confirmed by the detection of their intrinsic blaOXA-51 gene. Confirmed MDR A. baumannii isolates were screened for the presence of carbapenemase-encoding genes, ISAba1 insertion sequence and integrase intI1. Results: In total, 248 (19.3%) Acinetobacter species were isolated. Acinetobacter. baumannii was detected in 183 (73.8%) of which 85 (46.4%) and 98 (53.6%) were recovered from abattoir and aquatic respectively. MDR A. baumannii was detected in 56.5% (48/85) abattoir isolates and 53.1% (52/98) aquatic isolates. Isolates showed high resistance to antimicrobials most frequently used to treat Acinetobacter infections such as piperacillin/tazobactam; abattoir (98% of isolates resistant), aquatic (94% of isolates resistant), ceftazidime (84%, 83%), ciprofloxacin (71%, 70%), amikacin (41%, 42%), imipenem (75%, 73%), and meropenem (74%, 71%). All the isolates were susceptible to tigecycline and colistin. All the isolates carried blaOXA-51-like. The blaOXA-23 was detected in 32 (66.7%) abattoir isolates and 11 (21.2%) aquatic isolates. The blaOXA-58-like was positive in 7 (14.6%) and 4 (7.7%) abattoir and aquatic isolates, respectively. Both groups of isolates lacked blaOXA-24-like, blaIMP-type, blaVIM-type, blaNDM-1, blaSIM, blaAmpC, ISAba1 and inI1. Isolates showed high level of Multiple Antibiotic Resistance Index (MARI) ranging from 0.20-0.52. Conclusion: Extra-hospital sources such as abattoir and aquatic environments may be a vehicle of spread of MDR A. baumannii strains in the community and hospital settings.
- Full Text:
- Date Issued: 2019
- Authors: Adjei, Anane Yaw , Apalata, Teke , Vasaikar, Sandeep , Okuthe, Grace Emily , Songca, Sandile
- Date: 2019
- Subjects: Acinetobacter baumannii , Carbapenemase-encoding genes , Multidrug-resistance , ISAba1 , intI1
- Language: English
- Type: article , text
- Identifier: http://hdl.handle.net/11260/2409 , vital:41457 , https://doi.org/10.1016/j.bjid.2019.09.004
- Description: The presence of Acinetobacter baumannii outside hospitals remains unclear. This study aimed to determine the prevalence of multidrug-resistance (MDR) A. baumannii in the extra-hospital environment in Mthatha, South Africa and to investigate the frequency of carbapenemase-encoding genes. Material and Methods: From August 2016 to July 2017 a total of 598 abattoir samples and 689 aquatic samples were collected and analyzed presumptively by cultural methods for the presence of A. baumannii using CHROMagarTM Acinetobacter medium. Species identification was performed by autoSCAN-4 (Dade Behring Inc., IL) and confirmed by the detection of their intrinsic blaOXA-51 gene. Confirmed MDR A. baumannii isolates were screened for the presence of carbapenemase-encoding genes, ISAba1 insertion sequence and integrase intI1. Results: In total, 248 (19.3%) Acinetobacter species were isolated. Acinetobacter. baumannii was detected in 183 (73.8%) of which 85 (46.4%) and 98 (53.6%) were recovered from abattoir and aquatic respectively. MDR A. baumannii was detected in 56.5% (48/85) abattoir isolates and 53.1% (52/98) aquatic isolates. Isolates showed high resistance to antimicrobials most frequently used to treat Acinetobacter infections such as piperacillin/tazobactam; abattoir (98% of isolates resistant), aquatic (94% of isolates resistant), ceftazidime (84%, 83%), ciprofloxacin (71%, 70%), amikacin (41%, 42%), imipenem (75%, 73%), and meropenem (74%, 71%). All the isolates were susceptible to tigecycline and colistin. All the isolates carried blaOXA-51-like. The blaOXA-23 was detected in 32 (66.7%) abattoir isolates and 11 (21.2%) aquatic isolates. The blaOXA-58-like was positive in 7 (14.6%) and 4 (7.7%) abattoir and aquatic isolates, respectively. Both groups of isolates lacked blaOXA-24-like, blaIMP-type, blaVIM-type, blaNDM-1, blaSIM, blaAmpC, ISAba1 and inI1. Isolates showed high level of Multiple Antibiotic Resistance Index (MARI) ranging from 0.20-0.52. Conclusion: Extra-hospital sources such as abattoir and aquatic environments may be a vehicle of spread of MDR A. baumannii strains in the community and hospital settings.
- Full Text:
- Date Issued: 2019
A scoping review on problematic Internet use and Substance Use Disorder among men
- Authors: Adolph, Miché Tania
- Date: 2024-10-11
- Subjects: Internet addiction , Substance abuse , Men Mental health , Scoping review protocol , Compulsive behavior Sex differences
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/465788 , vital:76653
- Description: Problematic Internet Use (PIU) and Substance Use Disorder (SUD) interact in complex ways that influence the current mental health landscape. Concurrently, the advent of the digital era has presented new difficulties, one of which is the emergence of problematic internet use as a significant issue that negatively impacts mental health. The increasing popularity of internet use has led to an increasing number of reports highlighting the potential negative consequences of overuse, such as substance use. Thus, the study aimed to synthesise literature on problematic internet use and substance use disorder, including the way in which they affect men, given that prior research has predominantly focused on women. The methods employed follow the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews (PRISMA-ScR) which is largely based on a PRISMA statement and checklist, the JBI methodological guidance, and other approaches for undertaking scoping reviews. A total of 16 studies were eligible for final review, and the themes identified from the reviewed studies were obtained using Braun and Clarke’s thematic analysis. An analysis of the articles showed a large focus on gender differences in addiction patterns, vulnerability to problematic internet use across age groups, associations between substance use and behavioural addictions, problematic internet use and mental health disorders, the psychological consequences of problematic internet use and substance use disorders, and the various risk factors associated with the development of problematic internet use and substance use disorder. A clear understanding and conceptualisation of this behavioural addiction is vital, including the development and utilisation of appropriate and validated diagnostic and screening tools to measure its presence and, in turn, address it as an emerging mental health disorder. Focus should be given to the assessment of problematic internet use by distinguishing the two different forms, namely the generalised and specific forms of problematic internet use. Additionally, given that there were very few to no qualitative studies conducted on the topic of problematic internet use, much less addressing the possible association with substance use disorder, an assessment of the individual’s experience, especially that of men, is lacking. Future research could therefore aim to incorporate more qualitative studies to address the above. Further research is also needed to clarify the nature of the relationship between problematic internet use and substance use disorder for the purpose of establishing possible causality, including the neurobiological substrates involved. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-10-11
- Authors: Adolph, Miché Tania
- Date: 2024-10-11
- Subjects: Internet addiction , Substance abuse , Men Mental health , Scoping review protocol , Compulsive behavior Sex differences
- Language: English
- Type: Academic theses , Master's theses , text
- Identifier: http://hdl.handle.net/10962/465788 , vital:76653
- Description: Problematic Internet Use (PIU) and Substance Use Disorder (SUD) interact in complex ways that influence the current mental health landscape. Concurrently, the advent of the digital era has presented new difficulties, one of which is the emergence of problematic internet use as a significant issue that negatively impacts mental health. The increasing popularity of internet use has led to an increasing number of reports highlighting the potential negative consequences of overuse, such as substance use. Thus, the study aimed to synthesise literature on problematic internet use and substance use disorder, including the way in which they affect men, given that prior research has predominantly focused on women. The methods employed follow the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews (PRISMA-ScR) which is largely based on a PRISMA statement and checklist, the JBI methodological guidance, and other approaches for undertaking scoping reviews. A total of 16 studies were eligible for final review, and the themes identified from the reviewed studies were obtained using Braun and Clarke’s thematic analysis. An analysis of the articles showed a large focus on gender differences in addiction patterns, vulnerability to problematic internet use across age groups, associations between substance use and behavioural addictions, problematic internet use and mental health disorders, the psychological consequences of problematic internet use and substance use disorders, and the various risk factors associated with the development of problematic internet use and substance use disorder. A clear understanding and conceptualisation of this behavioural addiction is vital, including the development and utilisation of appropriate and validated diagnostic and screening tools to measure its presence and, in turn, address it as an emerging mental health disorder. Focus should be given to the assessment of problematic internet use by distinguishing the two different forms, namely the generalised and specific forms of problematic internet use. Additionally, given that there were very few to no qualitative studies conducted on the topic of problematic internet use, much less addressing the possible association with substance use disorder, an assessment of the individual’s experience, especially that of men, is lacking. Future research could therefore aim to incorporate more qualitative studies to address the above. Further research is also needed to clarify the nature of the relationship between problematic internet use and substance use disorder for the purpose of establishing possible causality, including the neurobiological substrates involved. , Thesis (MA) -- Faculty of Humanities, Psychology, 2024
- Full Text:
- Date Issued: 2024-10-11
Effects of the use of manipulative materials on grade nine learners’ performance in fractions in public high schools in Chris Hani West Education District, South Africa
- Authors: Adom, George
- Date: 2020-01
- Subjects: Mathematics -- Study and teaching -- Activity programs , Acalculia in children
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19371 , vital:43058
- Description: The purpose of this study was to investigate the effects of the use of manipulative concrete materials on grade 9 learners’ performance in fractions in public high schools in Chris Hani west education district, in the Eastern Cape Province of the Republic of South Africa. Two hundred and fifty (250) grade nine (9) learners, whose ages ranged between 13-16 years, and ten (10) educators teaching grade nine mathematics, were selected from 40 public high schools with the use of stratified, systematic random sampling, convenience and purposive sampling methods. One hundred and twenty-five (125) learners were put into the experimental group, and another one hundred and twenty-five (125) learners were put into a control group through systematic random sampling method. Pre-test, Post-test, and Control group quasi-experimental design were used as research designs to collect data. Two research instruments were developed. These included: A Fractions Achievement Test (FAT), and Students Questionnaire on Manipulative Concrete Materials (SQMCM). The experimental group were taught with the Manipulative Concrete Materials (Cuisenaire rods, Fraction bar/Fraction title, Paper folding and Computer assisted manipulative), whilst the control group was taught through the lecture method. Four (4) null hypotheses were generated and tested at 0.05 level of significance. The data collected were analysed using Analysis of Covariance (ANCOVA) to find the Mean, Standard Deviation and t-test. The mean and standard deviation were used to compare the pre-test and post-test results between the Experimental group and the Control group. The analysed results of the means, standard deviations and t-tests were used to reject the null hypotheses. The analysed results were illustrated as followed: Cuisenaire rods pre-test (mean = 8.372, SD=1.770), post-test (mean = 12,428, SD=4.732), t=13,024 p< 0.05. Hypothesis (H01) was rejected : Fraction tiles/fraction bars pre-test (mean = 8.372, SD=1.770), post-test (mean = 11,42, SD=3.67), t=12,10 p< 0.05. Hypothesis (H02) was rejected : Paper folding pre-test (mean = 8.372, SD=1.770), post-test (mean = 11,792, SD=4.256), t=12,024 p< 0.05. Hypothesis (H03) was rejected : Computer assisted manipulative pre-test (mean = 8.372, SD=1.770), post-test (mean = 12,212, SD=4.569), t=12,801 p< 0.05. Hypothesis (H04) was also rejected. The comparison of the mean scores and iv standard deviation between the Experimental groups and Control groups indicated that there was no significant difference in the Pre-test in all cases. On the other hand, the mean scores and standard deviations between the Experimental group and Control group in the Post-test showed a vast difference in all cases. There were improvement in the mean scores, and slightly difference in the standard deviations in the Experimental groups, whilst there were drops in the mean scores and standard deviations of the Control groups in all cases. From the studies, there was an indication that manipulative concrete materials have significant effects on grade nine learner’s performance in fractions. It was therefore suggested that manipulative concrete materials should be incorporated into the instructions of fractions in mathematics. , Thesis (PhD) -- Faculty of Education, 2020
- Full Text:
- Date Issued: 2020-01
- Authors: Adom, George
- Date: 2020-01
- Subjects: Mathematics -- Study and teaching -- Activity programs , Acalculia in children
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10353/19371 , vital:43058
- Description: The purpose of this study was to investigate the effects of the use of manipulative concrete materials on grade 9 learners’ performance in fractions in public high schools in Chris Hani west education district, in the Eastern Cape Province of the Republic of South Africa. Two hundred and fifty (250) grade nine (9) learners, whose ages ranged between 13-16 years, and ten (10) educators teaching grade nine mathematics, were selected from 40 public high schools with the use of stratified, systematic random sampling, convenience and purposive sampling methods. One hundred and twenty-five (125) learners were put into the experimental group, and another one hundred and twenty-five (125) learners were put into a control group through systematic random sampling method. Pre-test, Post-test, and Control group quasi-experimental design were used as research designs to collect data. Two research instruments were developed. These included: A Fractions Achievement Test (FAT), and Students Questionnaire on Manipulative Concrete Materials (SQMCM). The experimental group were taught with the Manipulative Concrete Materials (Cuisenaire rods, Fraction bar/Fraction title, Paper folding and Computer assisted manipulative), whilst the control group was taught through the lecture method. Four (4) null hypotheses were generated and tested at 0.05 level of significance. The data collected were analysed using Analysis of Covariance (ANCOVA) to find the Mean, Standard Deviation and t-test. The mean and standard deviation were used to compare the pre-test and post-test results between the Experimental group and the Control group. The analysed results of the means, standard deviations and t-tests were used to reject the null hypotheses. The analysed results were illustrated as followed: Cuisenaire rods pre-test (mean = 8.372, SD=1.770), post-test (mean = 12,428, SD=4.732), t=13,024 p< 0.05. Hypothesis (H01) was rejected : Fraction tiles/fraction bars pre-test (mean = 8.372, SD=1.770), post-test (mean = 11,42, SD=3.67), t=12,10 p< 0.05. Hypothesis (H02) was rejected : Paper folding pre-test (mean = 8.372, SD=1.770), post-test (mean = 11,792, SD=4.256), t=12,024 p< 0.05. Hypothesis (H03) was rejected : Computer assisted manipulative pre-test (mean = 8.372, SD=1.770), post-test (mean = 12,212, SD=4.569), t=12,801 p< 0.05. Hypothesis (H04) was also rejected. The comparison of the mean scores and iv standard deviation between the Experimental groups and Control groups indicated that there was no significant difference in the Pre-test in all cases. On the other hand, the mean scores and standard deviations between the Experimental group and Control group in the Post-test showed a vast difference in all cases. There were improvement in the mean scores, and slightly difference in the standard deviations in the Experimental groups, whilst there were drops in the mean scores and standard deviations of the Control groups in all cases. From the studies, there was an indication that manipulative concrete materials have significant effects on grade nine learner’s performance in fractions. It was therefore suggested that manipulative concrete materials should be incorporated into the instructions of fractions in mathematics. , Thesis (PhD) -- Faculty of Education, 2020
- Full Text:
- Date Issued: 2020-01
The Effect of training and development on employee performance in the Buffalo City Municipality in the Eastern Cape of South Africa
- Authors: Adom, Richard Kwame
- Date: 2019-09
- Subjects: Employees -- Training of , Performance -- Management , Employees -- Rating of
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/20153 , vital:45377
- Description: Training and development are regarded as significant tools for any organisation to achieve the target goals and objectives. These goals and objectives are heavily and highly dependent on its workforce. In the literature, it is well documented that many organisations invest in employees’ training and development to enhance their performance and the growth of the organisation. Many organisations, however, including the Buffalo City Municipality, regard training and staff development as needless expenditure, and always do little, or make no effort to improve employees’ technical know-how. Such actions incapacitate staff to adapt to the ever-changing working environment and rapid technological innovation. This study employed purposive sampling technique to draw a sample of 70 employees from a total of 150, through structured interviews and a self-administered questionnaire, to examine the effect of training and development on employees’ performance in the Buffalo City Municipality, situated in the Eastern Cape of South Africa. The findings of the study generally revealed that training and development does not only increase employees’ performance, but assists in developing the overall personality of employees by making them more productive through building their senses of teamwork, boosting the attitude of staff which is the most critical component in attaining profit, and developing a cordial relationship and connectivity between management and the workforce. The study, therefore, recommended that the municipality, as a matter of urgency, earmarks a certain percentage of its resources for employees training and development, based on identified skills gaps to sharpen employees’ skills, competencies, capabilities and technical know-how, to capacitate them to cope with the ever-changing working environment and innovations, and to enhance their motivation, satisfaction and performance. , Thesis (MPA) -- Faculty of Management and Commerce, 2019
- Full Text:
- Date Issued: 2019-09
- Authors: Adom, Richard Kwame
- Date: 2019-09
- Subjects: Employees -- Training of , Performance -- Management , Employees -- Rating of
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10353/20153 , vital:45377
- Description: Training and development are regarded as significant tools for any organisation to achieve the target goals and objectives. These goals and objectives are heavily and highly dependent on its workforce. In the literature, it is well documented that many organisations invest in employees’ training and development to enhance their performance and the growth of the organisation. Many organisations, however, including the Buffalo City Municipality, regard training and staff development as needless expenditure, and always do little, or make no effort to improve employees’ technical know-how. Such actions incapacitate staff to adapt to the ever-changing working environment and rapid technological innovation. This study employed purposive sampling technique to draw a sample of 70 employees from a total of 150, through structured interviews and a self-administered questionnaire, to examine the effect of training and development on employees’ performance in the Buffalo City Municipality, situated in the Eastern Cape of South Africa. The findings of the study generally revealed that training and development does not only increase employees’ performance, but assists in developing the overall personality of employees by making them more productive through building their senses of teamwork, boosting the attitude of staff which is the most critical component in attaining profit, and developing a cordial relationship and connectivity between management and the workforce. The study, therefore, recommended that the municipality, as a matter of urgency, earmarks a certain percentage of its resources for employees training and development, based on identified skills gaps to sharpen employees’ skills, competencies, capabilities and technical know-how, to capacitate them to cope with the ever-changing working environment and innovations, and to enhance their motivation, satisfaction and performance. , Thesis (MPA) -- Faculty of Management and Commerce, 2019
- Full Text:
- Date Issued: 2019-09